BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521825.2.1
(2812 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF169833.2| Sorghum bicolor seed starch branching enzyme... 3768 0.0
gb|CD228917.1|CD228917 CCC1_10_C07.g1_A007 Callus culture/c... 1158 0.0
gb|BG817414.1|BG817414 EM1_75_F07.b1_A002 Embryo 1 (EM1) So... 1001 0.0
gb|BG649752.1|BG649752 RHIZ2_83_B11.b1_A003 Rhizome2 (RHIZ2... 967 0.0
gb|BI140766.1|BI140766 IP1_38_E05.b1_A002 Immature pannicle... 944 0.0
gb|CF487568.1|CF487568 POL1_44_C12.g1_A002 Pollen Sorghum b... 749 0.0
gb|CD423005.1|CD423005 SA1_29_F01.g1_A002 Salicylic acid-tr... 672 0.0
gb|CF483032.1|CF483032 POL1_10_G02.g1_A002 Pollen Sorghum b... 662 0.0
gb|BF585794.1|BF585794 FM1_24_F05.b1_A003 Floral-Induced Me... 404 e-110
gb|BF587079.1|BF587079 FM1_32_A02.b1_A003 Floral-Induced Me... 404 e-110
gb|CD228814.1|CD228814 CCC1_10_C07.b1_A007 Callus culture/c... 343 5e-092
gb|BZ341924.1|BZ341924 ic79e06.b1 WGS-SbicolorF (JM107 adap... 337 3e-090
gb|CF487488.1|CF487488 POL1_44_C12.b1_A002 Pollen Sorghum b... 276 1e-071
gb|BE358422.1|BE358422 DG1_29_G03.g1_A002 Dark Grown 1 (DG1... 256 1e-065
gb|BZ341925.1|BZ341925 ic79e06.g1 WGS-SbicolorF (JM107 adap... 220 5e-055
gb|BG605918.1|BG605918 RHIZ2_83_B11.g1_A003 Rhizome2 (RHIZ2... 214 3e-053
gb|BG465379.1|BG465379 EM1_75_F07.g1_A002 Embryo 1 (EM1) So... 176 7e-042
gb|BI099155.1|BI099155 IP1_38_E05.g1_A002 Immature pannicle... 176 7e-042
gb|CD422963.1|CD422963 SA1_29_F01.b1_A002 Salicylic acid-tr... 176 7e-042
gb|BF585705.1|BF585705 FM1_24_F05.g1_A003 Floral-Induced Me... 168 2e-039
gb|BF586993.1|BF586993 FM1_32_A02.g1_A003 Floral-Induced Me... 163 1e-037
gb|CF482953.1|CF482953 POL1_10_G02.b1_A002 Pollen Sorghum b... 161 4e-037
gb|CW258436.1|CW258436 104_724_11227874_148_35167_009 Sorgh... 155 3e-035
gb|CW261745.1|CW261745 104_729_11229680_148_35206_032 Sorgh... 155 3e-035
gb|CW320802.1|CW320802 104_813_11475206_116_35901_049 Sorgh... 155 3e-035
gb|CW320803.1|CW320803 104_813_11475206_148_35897_049 Sorgh... 155 3e-035
gb|CW403343.1|CW403343 fsbb001f095a07k0 Sorghum methylation... 155 3e-035
gb|CL174190.1|CL174190 104_378_10891419_148_31770_171 Sorgh... 101 3e-019
gb|CW406488.1|CW406488 fsbb001f099i10f0 Sorghum methylation... 101 3e-019
gb|CW350851.1|CW350851 fsbb001f012f21k0 Sorghum methylation... 78 5e-012
gb|CL177929.1|CL177929 104_385_10894194_116_31914_258 Sorgh... 72 3e-010
gb|CW334914.1|CW334914 104_833_11482754_116_36073_005 Sorgh... 72 3e-010
gb|CW350850.1|CW350850 fsbb001f012f21f0 Sorghum methylation... 72 3e-010
gb|AY304540.1| Sorghum bicolor starch branching enzyme IIb ... 56 2e-005
gb|BZ330167.1|BZ330167 hv90e03.b1 WGS-SbicolorF (JM107 adap... 50 0.001
gb|CL174189.1|CL174189 104_378_10891419_116_31771_171 Sorgh... 50 0.001
gb|CW133344.1|CW133344 104_517_11116710_116_34809_029 Sorgh... 44 0.070
gb|CW235281.1|CW235281 104_690_11214899_116_37409_040 Sorgh... 42 0.28
>gb|AF169833.2| Sorghum bicolor seed starch branching enzyme mRNA, complete cds
Length = 2805
Score = 3768 bits (1901), Expect = 0.0
Identities = 2201/2301 (95%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggcggagaaaggactttgaacgagt 560
|||| |||||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 2312 cttcatctacacgataataagccacacaagtgcggggtggggaaaggactttgaatgagt 2253
Query: 561 tcggccggttgttgaagttcgtttcgggcacccctggcaccccttcaggcgacgtgaagt 620
| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 2252 ttggccggttgttgaagtttgtttcaggcacccctggtatcccttcaggcgacgtgaagt 2193
Query: 621 gatccacgtcgtggccaactcttccatgtccaccgaagaccagagcatcagagtccaggg 680
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
Sbjct: 2192 gatccacgtcgtggccaactcttccatgtccaccaaagacgaaagcatcagagtccagtg 2133
Query: 681 ctactctgtatttcccaggcaaatcgcatcccactttgtagccctcgtaagttttcttgg 740
||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||
Sbjct: 2132 ctactctgtatttcccaggcaaatcacatccaactttgtaaccgtcataagttttcttgg 2073
Query: 741 gatggaaattgaaaacaaaaactaaatctccacgttcaaagacaataaccttttcctcat 800
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 2072 gatgaaaattgaaaacaaaaaccaaatctccacgttcaaagacaataacctttttctcat 2013
Query: 801 cgttcatgtcgctgacgatctgctttgacgacgaaaggaaggaaaatctctcatcgagcg 860
| ||||||||||| || |||||||| || ||| |||||||||||||||||||||||||||
Sbjct: 2012 cattcatgtcgcttacaatctgcttggatgacaaaaggaaggaaaatctctcatcgagcg 1953
Query: 861 cattcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtgtccacaa 920
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 cattcattgcttgatcaaacgcattcatgtacttgtaccgcaagtgatcagtgtccacaa 1893
Query: 921 ggctccactgtcgtctgcatttatcatagctccagttgttcccttctcttggaaagtcaa 980
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 ggctccactgacgtctgcatttatcatagctccagttgttcccttctcttggaaagtcaa 1833
Query: 981 tccattctgggtgaccaaactcatttcccataaaattcaagtagccatcacctccaaggg 1040
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1832 tccattctgggtgaccaaactcattccccataaaattcaagtagccatcacctccaaggg 1773
Query: 1041 ccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgtaggtgaag 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 ccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgtaggtgaag 1713
Query: 1101 caggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaatgcaatag 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1712 caggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaatgctatag 1653
Query: 1161 ttttgtcgccaacaatagactgatcatggctctcagcatatgcgatgcatttttcagtat 1220
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 ttttgtcgccaacgatagactgatcatggctctcagcatatgcgatgcatttttcagtat 1593
Query: 1221 atctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagtcatctttat 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 atctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagtcatctttat 1533
Query: 1281 tcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagtcaaacccaa 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 tcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagtcaaacccaa 1473
Query: 1341 ccccaccttcatcaactggccggcaaaggaccggcatgcctgaaacatcttcagcaacaa 1400
| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1472 ctccaccttcatcaactgaccggcaaaggactggcatgcctgaaacatcttcagcaacaa 1413
Query: 1401 cagttgcttctggcaagagtttgtgcattaaatggtttgcaagcatcatgtaaacaactg 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 cagttgcttctggcaagagtttgtgcattaaatggtttgcaagcatcatgtaaacaactg 1353
Query: 1461 catccacagctgtgtccaaactgaaatattcctggtagtttccagtaaaccccacattga 1520
|||||||| ||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct: 1352 catccacatctgtgtccaaactgaaatactcctggtaattaccagtaaaccccacattga 1293
Query: 1521 taccatggtgatgatacagcattgatgtaactccatcaaatcggaagccatcaaacatga 1580
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1292 taccatggtgatgatacagcattgatgtaactccatcaaaccggaagccatcaaacatga 1233
Query: 1581 attcatccaaccaatatctcaggttagaaagaagaaaccttaatacctcccagttagcat 1640
||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1232 attcatctagccaatatctcaggttagaaagaagaaacctcaatacctcccagttagcat 1173
Query: 1641 agttgaacagccgactatcccaaagtttatgataacctctatctcccgcatgaaaatagg 1700
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1172 agttgaacagccgactgtcccaaagtttatgataacctctatctcccatatgaaaatagg 1113
Query: 1701 actcttgggtgctttgtccaacatcatagccatttaaaccatctgtgacattattacttg 1760
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1112 actcttgggtgctttgtccaacatcataaccatttaaaccatctgtgacattattacttg 1053
Query: 1761 catggctatggacaacatccatcagaactcgcaaacccaaactgtgtgccttatcaacaa 1820
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 catggctgtgaacaacatccatcagaactcgcaaacccaaactgtgtgccttatcaacaa 993
Query: 1821 gatatttgaggtcctctggtgtgcctgatctgctgctaaccgcaaagaaatttgtcacat 1880
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 gatattttaggtcctctggtgtgcctgatctgctgctaaccgcaaagaaatttgtcacat 933
Query: 1881 ggtacccgaaagaagcatagtacgaatgctccataactgccatcaactgaactgtgttgt 1940
||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 932 ggtacccaaaagaagcatagtaagaatgttccataactgccatcaactgaacggtgttgt 873
Query: 1941 agttatttgctcgtatgcgtggcaacacattgtctgcaaattccctatatgtgcttactg 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 agttatttgctcgtatgcgtggcaacacattgtctgcaaattccctatatgtgcttactg 813
Query: 2001 ctggcttttcaccactcatacctacatgggcttcatagatacgtggagcagcaggctttg 2060
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 812 ctggcttttcaccactcatacccacatgggcttcatagatacgtggagcagcaggctttg 753
Query: 2061 aaggccgaggatgcttaaatgtgtacctttcagaagcaggaggatcccaatgaacaccat 2120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaggccgaggatgcttaaaagtgtacctttcagaagcaggaggatcccaatgaacaccat 693
Query: 2121 catagggagctccaaatttagaggcatcaacagtcgcataacgaatcaatgctggaatac 2180
||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||
Sbjct: 692 catagggagctccaaatttagaggcatcagcagtcgcataacgaatccatgcaggaatac 633
Query: 2181 gatcaacccatactccaccatgtagaaagcgaaatttaaccttggaattgtgagggatgg 2240
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 632 gatcaacccatactccaccatgtagaaagcgaaatttaaccttggaattatgagggatag 573
Query: 2241 caggtttccctttgacatggtcaattttgatcgaccaaacaccaaatttatccttctcca 2300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 caggtttccctttgacatggtcaattttgatcgaccaaacaccaaatttatccttctcca 513
Query: 2301 tcttatggtttgcaccattccagtcattgaagtcaccaataagctctgcctcctgcgcag 2360
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 512 tcttgtggtttgcaccattccactcattgaagtcaccaataagctctgcctcctgtgcag 453
Query: 2361 caggtgcccattcacgatatacagttccatcctcatttgtattaatcccaaatttcaaat 2420
||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 452 caggtgcccattcgcgatatacagttccatcctcacttgtattgatcccaaatttcaaat 393
Query: 2421 agcctttagaaaaagattcaagacttccctcattttcttcaattgatcctttctgctcta 2480
||||||||||||| ||||||||||||||||||||| ||||| || |||||||| || |
Sbjct: 392 agcctttagaaaattcttcaagacttccctcattttcctcaatggagcctttctggtcca 333
Query: 2481 ggaatcttttcatccggtacctgaaatggtccttgaatatctccagcttggggtccaggt 2540
||||| ||||||||||||| |||||||||||||||||| || ||| ||||||||||||||
Sbjct: 332 ggaattttttcatccggtagctgaaatggtccttgaatttcaccaacttggggtccaggt 273
Query: 2541 cgtatatggggagatggtcgacatcgcctttggcagttgccatagttttatcttcttgca 2600
|||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct: 272 cgtatatgggaagatggtcgacgttgcctttggcggttgccatagttttatcttcttgca 213
Query: 2601 cagtagctgcagtggcgaatttgctcttgaccttccgcacccctgaccggcgagccttgc 2660
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 212 caatagctgcagtggcgaatttgctcttgaccttccggggccctgaccggcgagcctcgc 153
Query: 2661 actggacagacaacacactcaggcgcacattgccgccacccgcgatccccggcggtgccg 2720
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 152 actggacagacagcacactcaggcgcacattgctgccacccgcgatccctggcggcgccg 93
Query: 2721 cccgatcagcatgcgagcgagagcgccgcggcggcggaagcggagtcggcgaggaagagg 2780
||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 92 cccgatcagcaggcgaacgagagcgccgcggcggcgggagcggagtcggcgaggaagacg 33
Query: 2781 gcgacacgaggcacagcattg 2801
|||||||||||||||||||||
Sbjct: 32 gcgacacgaggcacagcattg 12
Score = 176 bits (89), Expect = 7e-042
Identities = 145/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 2619 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcaggact 2563
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 2562 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 2503
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 2502 tttttattggatgactggcgtgcaaacttccatcccttcttgc 2460
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 2449 cttgccaccagatgttgcctccttgtcttcttt 2417
>gb|CD228917.1|CD228917 CCC1_10_C07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_C07_A007 5', mRNA sequence
Length = 651
Score = 1158 bits (584), Expect = 0.0
Identities = 636/652 (97%), Gaps = 1/652 (0%)
Strand = Plus / Minus
Query: 796 ctcatcgttcatgtcgctgacgatctgctttgacgacgaaaggaaggaaaatctctcatc 855
|||||| ||||||||||| || |||||||| || ||| ||||||||||||||||||||||
Sbjct: 651 ctcatcattcatgtcgcttacaatctgcttggatgacaaaaggaaggaaaatctctcatc 592
Query: 856 gagcgcattcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtgtc 915
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gagcgcattcattgcttgatcaaacgcattcatgtacttgtaccgcaagtgatcagtgtc 532
Query: 916 cacaaggctccactgtcgtctgcatttatcatagctccagttgttcccttctcttggaaa 975
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cacaaggctccactgacgtctgcatttatcatagctccagttgttcccttctcttggaaa 472
Query: 976 gtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagccatcacctcc 1035
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 471 gtcaatccattctgggtgaccaaactcattccccataaaattcaagtagccatcacctcc 412
Query: 1036 aagggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgtagg 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aagggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgtagg 352
Query: 1096 tgaagcaggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaatgc 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgaagcaggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaatgc 292
Query: 1156 aatagttttgtcgccaacaatagactgatcatggctctcagcatatgcgatgcatttttc 1215
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatagttttgtcgccaacgatagactgatcatggctctcagcatatgcgatgcatttttc 232
Query: 1216 agtatatctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagtcatc 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 agtatatctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagtcatc 172
Query: 1276 tttattcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagtcaaa 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tttattcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagtcaaa 112
Query: 1336 cccaaccccaccttcatcaactggccggcaaaggaccggcatgcctgaaacatcttcagc 1395
|||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 111 cccaactccaccttcatcaactgaccggcaaaggactggcatgcctgaaacatcttcagc 52
Query: 1396 aacaacagttgcttctggcaagagtttgtgcattaaatggtttgcaagcatc 1447
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 51 aacaacagttgcttctggcaagagtttgtgcattaaatgg-ttgcaagcatc 1
>gb|BG817414.1|BG817414 EM1_75_F07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 581
Score = 1001 bits (505), Expect = 0.0
Identities = 556/573 (97%)
Strand = Plus / Minus
Query: 1142 atcaggagaaatgcaatagttttgtcgccaacaatagactgatcatggctctcagcatat 1201
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 581 atcaggagaaatgctatagttttgtcgccaacgatagactgatcatggctctcagcatat 522
Query: 1202 gcgatgcatttttcagtatatctcctgttagtcaaagtatgcgctatttcacccatcgac 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gcgatgcatttttcagtatatctcctgttagtcaaagtatgcgctatttcacccatcgac 462
Query: 1262 cactcagagtcatctttattcttcaggtagtcaatccatctatcagggatagccattgcc 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cactcagagtcatctttattcttcaggtagtcaatccatctatcagggatagccattgcc 402
Query: 1322 aggcgatagtcaaacccaaccccaccttcatcaactggccggcaaaggaccggcatgcct 1381
|||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct: 401 aggcgatagtcaaacccaactccaccttcatcaactgaccggcaaaggactggcatgcct 342
Query: 1382 gaaacatcttcagcaacaacagttgcttctggcaagagtttgtgcattaaatggtttgca 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaaacatcttcagcaacaacagttgcttctggcaagagtttgtgcattaaatggtttgca 282
Query: 1442 agcatcatgtaaacaactgcatccacagctgtgtccaaactgaaatattcctggtagttt 1501
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct: 281 agcatcatgtaaacaactgcatccacatctgtgtccaaactgaaatactcctggtaatta 222
Query: 1502 ccagtaaaccccacattgataccatggtgatgatacagcattgatgtaactccatcaaat 1561
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 221 ccagtaaaccccacattgataccatggtgatgatacagcattgatgtaattccatcaaac 162
Query: 1562 cggaagccatcaaacatgaattcatccaaccaatatctcaggttagaaagaagaaacctt 1621
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 161 cggaagccatcaaacatgaattcatctagccaatatctcaggttagaaagaagaaacctc 102
Query: 1622 aatacctcccagttagcatagttgaacagccgactatcccaaagtttatgataacctcta 1681
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 101 aatacctcccagttagcatagttgaacagccgactgtcccaaagtttatgataacctcta 42
Query: 1682 tctcccgcatgaaaataggactcttgggtgctt 1714
|||||| |||||||||||||||||||||||||
Sbjct: 41 tctcccatatgaaaataggactcttgggtgctt 9
>gb|BG649752.1|BG649752 RHIZ2_83_B11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 624
Score = 967 bits (488), Expect = 0.0
Identities = 590/624 (94%)
Strand = Plus / Minus
Query: 2044 tggagcagcaggctttgaaggccgaggatgcttaaatgtgtacctttcagaagcaggagg 2103
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 624 tggagcagcaggctttgaaggccgaggatgcttaaaagtgtacctttcagaagcaggagg 565
Query: 2104 atcccaatgaacaccatcatagggagctccaaatttagaggcatcaacagtcgcataacg 2163
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 atcccaatgaacaccatcatagggagctccaaatttagaggcatcagcagtcgcataacg 505
Query: 2164 aatcaatgctggaatacgatcaacccatactccaccatgtagaaagcgaaatttaacctt 2223
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatccatgcaggaatacgatcaacccatactccaccatgtagaaagcgaaatttaacctt 445
Query: 2224 ggaattgtgagggatggcaggtttccctttgacatggtcaattttgatcgaccaaacacc 2283
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaattatgagggatagcaggtttccctttgacatggtcaattttgatcgaccaaacacc 385
Query: 2284 aaatttatccttctccatcttatggtttgcaccattccagtcattgaagtcaccaataag 2343
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 aaatttatccttctccatcttgtggtttgcaccattccactcattgaagtcaccaataag 325
Query: 2344 ctctgcctcctgcgcagcaggtgcccattcacgatatacagttccatcctcatttgtatt 2403
|||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 324 ctctgcctcctgtgcagcaggtgcccattcgcgatatacagttccatcctcacttgtatt 265
Query: 2404 aatcccaaatttcaaatagcctttagaaaaagattcaagacttccctcattttcttcaat 2463
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 264 gatcccaaatttcaaatagcctttagaaaattcttcaagacttccctcattttcctcaat 205
Query: 2464 tgatcctttctgctctaggaatcttttcatccggtacctgaaatggtccttgaatatctc 2523
|| |||||||| || |||||| ||||||||||||| |||||||||||||||||| || |
Sbjct: 204 ggagcctttctggtccaggaattttttcatccggtagctgaaatggtccttgaatttcac 145
Query: 2524 cagcttggggtccaggtcgtatatggggagatggtcgacatcgcctttggcagttgccat 2583
|| |||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||
Sbjct: 144 caacttggggtccaggtcgtatatgggaagatggtcgacgttgcctttggcggttgccat 85
Query: 2584 agttttatcttcttgcacagtagctgcagtggcgaatttgctcttgaccttccgcacccc 2643
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 84 agttttatcttcttgcacaatagctgcagtggcgaatttgctcttgaccttccggggccc 25
Query: 2644 tgaccggcgagccttgcactggac 2667
|||||||||||||| |||||||||
Sbjct: 24 tgaccggcgagcctcgcactggac 1
>gb|BI140766.1|BI140766 IP1_38_E05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 944 bits (476), Expect = 0.0
Identities = 528/544 (97%), Gaps = 1/544 (0%)
Strand = Plus / Minus
Query: 1853 ctgctaaccgcaaagaaa-tttgtcacatggtacccgaaagaagcatagtacgaatgctc 1911
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 553 ctgctaaccgcaaagaaaatttgtcacatggtacccaaaagaagcatagtaagaatgttc 494
Query: 1912 cataactgccatcaactgaactgtgttgtagttatttgctcgtatgcgtggcaacacatt 1971
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cataactgccatcaactgaacggtgttgtagttatttgctcgtatgcgtggcaacacatt 434
Query: 1972 gtctgcaaattccctatatgtgcttactgctggcttttcaccactcatacctacatgggc 2031
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 433 gtctgcaaattccctatatgtgcttactgctggcttttcaccactcatacccacatgggc 374
Query: 2032 ttcatagatacgtggagcagcaggctttgaaggccgaggatgcttaaatgtgtacctttc 2091
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 373 ttcatagatacgtggagcagcaggctttgaaggccgaggatgcttaaaagtgtacctttc 314
Query: 2092 agaagcaggaggatcccaatgaacaccatcatagggagctccaaatttagaggcatcaac 2151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 313 agaagcaggaggatcccaatgaacaccatcatagggagctccaaatttagaggcatcagc 254
Query: 2152 agtcgcataacgaatcaatgctggaatacgatcaacccatactccaccatgtagaaagcg 2211
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agtcgcataacgaatccatgcaggaatacgatcaacccatactccaccatgtagaaagcg 194
Query: 2212 aaatttaaccttggaattgtgagggatggcaggtttccctttgacatggtcaattttgat 2271
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 193 aaatttaaccttggaattatgagggatagcaggtttccctttgacatggtcaattttgat 134
Query: 2272 cgaccaaacaccaaatttatccttctccatcttatggtttgcaccattccagtcattgaa 2331
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 133 cgaccaaacaccaaatttatccttctccatcttgtggtttgcaccattccactcattgaa 74
Query: 2332 gtcaccaataagctctgcctcctgcgcagcaggtgcccattcacgatatacagttccatc 2391
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 73 gtcaccaataagctctgcctcctgtgcagcaggtgcccattcgcgatatacagttccatc 14
Query: 2392 ctca 2395
||||
Sbjct: 13 ctca 10
>gb|CF487568.1|CF487568 POL1_44_C12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_44_C12_A002 5', mRNA sequence
Length = 731
Score = 749 bits (378), Expect = 0.0
Identities = 489/526 (92%)
Strand = Plus / Minus
Query: 2276 caaacaccaaatttatccttctccatcttatggtttgcaccattccagtcattgaagtca 2335
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 731 caaacaccaaatttatccttctccatcttgtggtttgcaccattccactcattgaagtca 672
Query: 2336 ccaataagctctgcctcctgcgcagcaggtgcccattcacgatatacagttccatcctca 2395
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 671 ccaataagctctgcctcctgtgcagcaggtgcccattcgcgatatacagttccatcctca 612
Query: 2396 tttgtattaatcccaaatttcaaatagcctttagaaaaagattcaagacttccctcattt 2455
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 611 cttgtattgatcccaaatttcaaatagcctttagaaaattcttcaagacttccctcattt 552
Query: 2456 tcttcaattgatcctttctgctctaggaatcttttcatccggtacctgaaatggtccttg 2515
|| ||||| || |||||||| || |||||| ||||||||||||| |||||||||||||||
Sbjct: 551 tcctcaatggagcctttctggtccaggaattttttcatccggtagctgaaatggtccttg 492
Query: 2516 aatatctccagcttggggtccaggtcgtatatggggagatggtcgacatcgcctttggca 2575
||| || ||| |||||||||||||||||||||||| ||||||||| | | |||||||||
Sbjct: 491 aatttcaccaacttggggtccaggtcgtatatgggaagatggtcggcgttgcctttggcg 432
Query: 2576 gttgccatagttttatcttcttgcacagtagctgcagtggcgaatttgctcttgaccttc 2635
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 431 gttgccatagttttatcttcttgcacaatagctgcagtggcgaatttgctcttgaccttc 372
Query: 2636 cgcacccctgaccggcgagccttgcactggacagacaacacactcaggcgcacattgccg 2695
|| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct: 371 cggggccctgaccggcgagcctcgcactggacagacagcacactcaggcgcacattgctg 312
Query: 2696 ccacccgcgatccccggcggtgccgcccgatcagcatgcgagcgagagcgccgcggcggc 2755
|||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct: 311 ccacccgcgatccctggcggcgccgcccgatcagcaggcgaacgagagcgccgcggcggc 252
Query: 2756 ggaagcggagtcggcgaggaagagggcgacacgaggcacagcattg 2801
|| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 251 gggagcggagtcggcgaggaagacggcgacacgaggcacagcattg 206
>gb|CD423005.1|CD423005 SA1_29_F01.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_29_F01_A002 5', mRNA sequence
Length = 682
Score = 672 bits (339), Expect = 0.0
Identities = 455/494 (92%)
Strand = Plus / Minus
Query: 2308 gtttgcaccattccagtcattgaagtcaccaataagctctgcctcctgcgcagcaggtgc 2367
||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 671 gtttgcaccattccactcatgaagntcaccaataagctctgcctcctgtgcagcaggtgc 612
Query: 2368 ccattcacgatatacagttccatcctcatttgtattaatcccaaatttcaaatagccttt 2427
|||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 611 ccattcgcgatatacagttccatcctcacttgtattgatcccaaatttcaaatagccttt 552
Query: 2428 agaaaaagattcaagacttccctcattttcttcaattgatcctttctgctctaggaatct 2487
|||||| ||||||||||||||||||||| ||||| || |||||||| || |||||| |
Sbjct: 551 agaaaattcttcaagacttccctcattttcctcaatggagcctttctggtccaggaattt 492
Query: 2488 tttcatccggtacctgaaatggtccttgaatatctccagcttggggtccaggtcgtatat 2547
|||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 491 tttcatccggtagctgaaatggtccttgaatttcaccaacttggggtccaggtcgtatat 432
Query: 2548 ggggagatggtcgacatcgcctttggcagttgccatagttttatcttcttgcacagtagc 2607
||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 431 gggaagatggtcgacgttgcctttggcggttgccatagttttatcttcttgcacaatagc 372
Query: 2608 tgcagtggcgaatttgctcttgaccttccgcacccctgaccggcgagccttgcactggac 2667
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 371 tgcagtggcgaatttgctcttgaccttccggggccctgaccggcgagcctcgcactggac 312
Query: 2668 agacaacacactcaggcgcacattgccgccacccgcgatccccggcggtgccgcccgatc 2727
||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 311 agacagcacactcaggcgcacattgctgccacccgcgatccctggcggcgccgcccgatc 252
Query: 2728 agcatgcgagcgagagcgccgcggcggcggaagcggagtcggcgaggaagagggcgacac 2787
|||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 251 agcaggcgaacgagagcgccgcggcggcgggagcggagtcggcgaggaagacggcgacac 192
Query: 2788 gaggcacagcattg 2801
||||||||||||||
Sbjct: 191 gaggcacagcattg 178
>gb|CF483032.1|CF483032 POL1_10_G02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_10_G02_A002 5', mRNA sequence
Length = 675
Score = 662 bits (334), Expect = 0.0
Identities = 436/470 (92%)
Strand = Plus / Minus
Query: 2332 gtcaccaataagctctgcctcctgcgcagcaggtgcccattcacgatatacagttccatc 2391
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 675 gtcaccaataagctctgcctcctgtgcagcaggtgcccattcgcgatatacagttccatc 616
Query: 2392 ctcatttgtattaatcccaaatttcaaatagcctttagaaaaagattcaagacttccctc 2451
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 ctcacttgtattgatcccaaatttcaaatagcctttagaaaattcttcaagacttccctc 556
Query: 2452 attttcttcaattgatcctttctgctctaggaatcttttcatccggtacctgaaatggtc 2511
|||||| ||||| || |||||||| || |||||| ||||||||||||| |||||||||||
Sbjct: 555 attttcctcaatggagcctttctggtccaggaattttttcatccggtagctgaaatggtc 496
Query: 2512 cttgaatatctccagcttggggtccaggtcgtatatggggagatggtcgacatcgccttt 2571
||||||| || ||| |||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 495 cttgaatttcaccaacttggggtccaggtcgtatatgggaagatggtcgacgttgccttt 436
Query: 2572 ggcagttgccatagttttatcttcttgcacagtagctgcagtggcgaatttgctcttgac 2631
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 435 ggcggttgccatagttttatcttcttgcacaatagctgcagtggcgaatttgctcttgac 376
Query: 2632 cttccgcacccctgaccggcgagccttgcactggacagacaacacactcaggcgcacatt 2691
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 375 cttccggggccctgaccggcgagcctcgcactggacagacagcacactcaggcgcacatt 316
Query: 2692 gccgccacccgcgatccccggcggtgccgcccgatcagcatgcgagcgagagcgccgcgg 2751
|| ||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 315 gctgccacccgcgatccctggcggcgccgcccgatcagcaggcgaacgagagcgccgcgg 256
Query: 2752 cggcggaagcggagtcggcgaggaagagggcgacacgaggcacagcattg 2801
|||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 255 cggcgggagcggagtcggcgaggaagacggcgacacgaggcacagcattg 206
>gb|BF585794.1|BF585794 FM1_24_F05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 449
Score = 404 bits (204), Expect = e-110
Identities = 252/268 (94%)
Strand = Plus / Minus
Query: 2534 tccaggtcgtatatggggagatggtcgacatcgcctttggcagttgccatagttttatct 2593
||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||
Sbjct: 446 tccaggtcgtatatgggaagatggtcgacgttgcctttggcggttgccatagttttatct 387
Query: 2594 tcttgcacagtagctgcagtggcgaatttgctcttgaccttccgcacccctgaccggcga 2653
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 386 tcttgcacaatagctgcagtggcgaatttgctcttgaccttccggggccctgaccggcga 327
Query: 2654 gccttgcactggacagacaacacactcaggcgcacattgccgccacccgcgatccccggc 2713
|||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||
Sbjct: 326 gcctcgcactggacagacagcacactcaggcgcacattgctgccacccgcgatccctggc 267
Query: 2714 ggtgccgcccgatcagcatgcgagcgagagcgccgcggcggcggaagcggagtcggcgag 2773
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 266 ggcgccgcccgatcagcaggcgagcgagagcgccgcggcggcgggagcggagtcggcgag 207
Query: 2774 gaagagggcgacacgaggcacagcattg 2801
||||| ||||||||||||||||||||||
Sbjct: 206 gaagacggcgacacgaggcacagcattg 179
>gb|BF587079.1|BF587079 FM1_32_A02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 386
Score = 404 bits (204), Expect = e-110
Identities = 252/268 (94%)
Strand = Plus / Minus
Query: 2534 tccaggtcgtatatggggagatggtcgacatcgcctttggcagttgccatagttttatct 2593
||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||
Sbjct: 384 tccaggtcgtatatgggaagatggtcgacgttgcctttggcggttgccatagttttatct 325
Query: 2594 tcttgcacagtagctgcagtggcgaatttgctcttgaccttccgcacccctgaccggcga 2653
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 tcttgcacaatagctgcagtggcgaatttgctcttgaccttccggggccctgaccggcga 265
Query: 2654 gccttgcactggacagacaacacactcaggcgcacattgccgccacccgcgatccccggc 2713
|||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||
Sbjct: 264 gcctcgcactggacagacagcacactcaggcgcacattgctgccacccgcgatccctggc 205
Query: 2714 ggtgccgcccgatcagcatgcgagcgagagcgccgcggcggcggaagcggagtcggcgag 2773
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggcgccgcccgatcagcaggcgagcgagagcgccgcggcggcgggagcggagtcggcgag 145
Query: 2774 gaagagggcgacacgaggcacagcattg 2801
||||| ||||||||||||||||||||||
Sbjct: 144 gaagacggcgacacgaggcacagcattg 117
>gb|CD228814.1|CD228814 CCC1_10_C07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_C07_A007 3', mRNA sequence
Length = 643
Score = 343 bits (173), Expect = 5e-092
Identities = 233/253 (92%)
Strand = Plus / Minus
Query: 509 acacggtaataagccacacaggtgcggggcggagaaaggactttgaacgagttcggccgg 568
||||| |||||||||||||| |||||||| || |||||||||||||| ||||| ||||||
Sbjct: 253 acacgataataagccacacaagtgcggggtggggaaaggactttgaatgagtttggccgg 194
Query: 569 ttgttgaagttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacg 628
||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 193 ttgttgaagtttgtttcaggcacccctggtatcccttcaggcgacgtgaagtgatccacg 134
Query: 629 tcgtggccaactcttccatgtccaccgaagaccagagcatcagagtccagggctactctg 688
|||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||
Sbjct: 133 tcgtggccaactcttccatgtccaccaaagacgaaagcatcagagtccagtgctactctg 74
Query: 689 tatttcccaggcaaatcgcatcccactttgtagccctcgtaagttttcttgggatggaaa 748
||||||||||||||||| ||||| |||||||| || || ||||||||||||||||| |||
Sbjct: 73 tatttcccaggcaaatcacatccaactttgtaaccgtcataagttttcttgggatgaaaa 14
Query: 749 ttgaaaacaaaaa 761
|||||||||||||
Sbjct: 13 ttgaaaacaaaaa 1
Score = 176 bits (89), Expect = 7e-042
Identities = 145/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 568 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcaggact 512
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 511 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 452
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 451 tttttattggatgactggcgtgcaaacttccatcccttcttgc 409
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 398 cttgccaccagatgttgcctccttgtcttcttt 366
>gb|BZ341924.1|BZ341924 ic79e06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic79e06 5', DNA sequence
Length = 557
Score = 337 bits (170), Expect = 3e-090
Identities = 188/194 (96%)
Strand = Plus / Plus
Query: 2160 aacgaatcaatgctggaatacgatcaacccatactccaccatgtagaaagcgaaatttaa 2219
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aacgaatccatgcaggaatacgatcaacccatactccaccatgtagaaagcgaaatttaa 61
Query: 2220 ccttggaattgtgagggatggcaggtttccctttgacatggtcaattttgatcgaccaaa 2279
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ccttggaattatgagggatagcaggtttccctttgacatggtcaattttgatcgaccaaa 121
Query: 2280 caccaaatttatccttctccatcttatggtttgcaccattccagtcattgaagtcaccaa 2339
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 122 caccaaatttatccttctccatcttgtggtttgcaccattccactcattgaagtcaccaa 181
Query: 2340 taagctctgcctcc 2353
||||||||||||||
Sbjct: 182 taagctctgcctcc 195
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2357 gcagcaggtgcccattcacgatatacagttcca 2389
||||||||||||||||| |||||||||||||||
Sbjct: 525 gcagcaggtgcccattcgcgatatacagttcca 557
>gb|CF487488.1|CF487488 POL1_44_C12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_44_C12_A002 3', mRNA sequence
Length = 714
Score = 276 bits (139), Expect = 1e-071
Identities = 200/219 (91%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggc-ggagaaaggactttgaacgag 559
|||| |||||||| |||||||||||||| |||||||| || |||||||||||||| |||
Sbjct: 219 cttcatctacacgataataagccacacaagtgcgggggtggggaaaggactttgaatgag 160
Query: 560 ttcggccggttgttgaagttcgtttcgggcacccctggcaccccttcaggcgacgtgaag 619
|| ||||||||||||||||| ||||| ||||||||||| | ||| |||||||||||||||
Sbjct: 159 tttggccggttgttgaagtttgtttcaggcacccctggtatcccctcaggcgacgtgaag 100
Query: 620 tgatccacgtcgtggccaactcttccatgtccaccgaagaccagagcatcagagtccagg 679
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 99 tgatccacgtcgtggccaactcttccatgtccaccaaagacgaaagcatcagagtccagt 40
Query: 680 gctactctgtatttcccaggcaaatcgcatcccactttg 718
|||||||||||||||||||||||||| ||||| ||||||
Sbjct: 39 gctactctgtatttcccaggcaaatcacatccaactttg 1
Score = 168 bits (85), Expect = 2e-039
Identities = 144/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||
Sbjct: 526 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcagggct 470
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 469 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 410
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 409 tttttattggatgactggcgtgcaaacttccatcccttcttgc 367
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 356 cttgccaccagatgttgcctccttgtcttcttt 324
>gb|BE358422.1|BE358422 DG1_29_G03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 651
Score = 256 bits (129), Expect = 1e-065
Identities = 174/189 (92%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggcggagaaaggactttgaacgagt 560
|||| |||||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 189 cttcatctacacgataataagccacacaagtgcggggtggggaaaggactttgaatgagt 130
Query: 561 tcggccggttgttgaagttcgtttcgggcacccctggcaccccttcaggcgacgtgaagt 620
| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 129 ttggccggttgttgaagtttgtttcaggcacccctggtatcccttcaggcgacgtgaagt 70
Query: 621 gatccacgtcgtggccaactcttccatgtccaccgaagaccagagcatcagagtccaggg 680
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
Sbjct: 69 gatccacgtcgtggccaactcttccatgtccaccaaagacgaaagcatcagagtccagtg 10
Query: 681 ctactctgt 689
|||||||||
Sbjct: 9 ctactctgt 1
Score = 176 bits (89), Expect = 7e-042
Identities = 145/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 496 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcaggact 440
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 439 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 380
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 379 tttttattggatgactggcgtgcaaacttccatcccttcttgc 337
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 326 cttgccaccagatgttgcctccttgtcttcttt 294
>gb|BZ341925.1|BZ341925 ic79e06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic79e06 5', DNA sequence
Length = 695
Score = 220 bits (111), Expect = 5e-055
Identities = 120/123 (97%)
Strand = Plus / Minus
Query: 2231 tgagggatggcaggtttccctttgacatggtcaattttgatcgaccaaacaccaaattta 2290
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgagggatagcaggtttccctttgacatggtcaattttgatcgaccaaacaccaaattta 636
Query: 2291 tccttctccatcttatggtttgcaccattccagtcattgaagtcaccaataagctctgcc 2350
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 635 tccttctccatcttgtggtttgcaccattccactcattgaagtcaccaataagctctgcc 576
Query: 2351 tcc 2353
|||
Sbjct: 575 tcc 573
Score = 113 bits (57), Expect = 9e-023
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 2357 gcagcaggtgcccattcacgatatacagttccatcctcatttgtattaatcccaaatttc 2416
||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 243 gcagcaggtgcccattcgcgatatacagttccatcctcacttgtattgatcccaaatttc 184
Query: 2417 aaatagcct 2425
|||||||||
Sbjct: 183 aaatagcct 175
Score = 97.6 bits (49), Expect = 5e-018
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 2423 cctttagaaaaagattcaagacttccctcattttcttcaattgatcctttctgctctagg 2482
||||||||||| ||||||||||||||||||||| ||||| || |||||||| || |||
Sbjct: 89 cctttagaaaattcttcaagacttccctcattttcctcaatggagcctttctggtccagg 30
Query: 2483 aatcttttcatccggtacctgaaatggtc 2511
||| ||||||||||||| |||||||||||
Sbjct: 29 aattttttcatccggtagctgaaatggtc 1
>gb|BG605918.1|BG605918 RHIZ2_83_B11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 671
Score = 214 bits (108), Expect = 3e-053
Identities = 141/152 (92%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggcggagaaaggactttgaacgagt 560
|||| |||||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 152 cttcatctacacgataataagccacacaagtgcggggtggggaaaggactttgaatgagt 93
Query: 561 tcggccggttgttgaagttcgtttcgggcacccctggcaccccttcaggcgacgtgaagt 620
| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 92 ttggccggttgttgaagtttgtttcaggcacccctggtatcccttcaggcgacgtgaagt 33
Query: 621 gatccacgtcgtggccaactcttccatgtcca 652
||||||||||||||||||||||||||||||||
Sbjct: 32 gatccacgtcgtggccaactcttccatgtcca 1
Score = 176 bits (89), Expect = 7e-042
Identities = 145/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 459 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcaggact 403
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 402 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 343
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 342 tttttattggatgactggcgtgcaaacttccatcccttcttgc 300
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 289 cttgccaccagatgttgcctccttgtcttcttt 257
>gb|BG465379.1|BG465379 EM1_75_F07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 558
Score = 176 bits (89), Expect = 7e-042
Identities = 145/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 362 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcaggact 306
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 305 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 246
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 245 tttttattggatgactggcgtgcaaacttccatcccttcttgc 203
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggcggagaaaggactttgaa 555
|||| |||||||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct: 55 cttcatctacacgataataagccacacaagtgcggggtggggaaaggactttgaa 1
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 192 cttgccaccagatgttgcctccttgtcttcttt 160
>gb|BI099155.1|BI099155 IP1_38_E05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 547
Score = 176 bits (89), Expect = 7e-042
Identities = 145/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 366 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcaggact 310
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 309 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 250
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 249 tttttattggatgactggcgtgcaaacttccatcccttcttgc 207
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggcggagaaaggactttgaa 555
|||| |||||||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct: 59 cttcatctacacgataataagccacacaagtgcggggtggggaaaggactttgaa 5
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 196 cttgccaccagatgttgcctccttgtcttcttt 164
>gb|CD422963.1|CD422963 SA1_29_F01.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_29_F01_A002 3', mRNA sequence
Length = 588
Score = 176 bits (89), Expect = 7e-042
Identities = 145/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 355 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcaggact 299
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 298 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 239
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 238 tttttattggatgactggcgtgcaaacttccatcccttcttgc 196
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 185 cttgccaccagatgttgcctccttgtcttcttt 153
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcgggg 537
|||| |||||||| |||||||||||||| ||||||||
Sbjct: 48 cttcatctacacgataataagccacacaagtgcgggg 12
>gb|BF585705.1|BF585705 FM1_24_F05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 507
Score = 168 bits (85), Expect = 2e-039
Identities = 144/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 384 agctacaggaaaggactgttacaagggcaccagcggc---tagtccagtagagcaggact 328
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 327 attaagagggcgctggcagccagtccagtcctgatcaaggacttctggcttcatttggtg 268
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 267 tttttattggatgactggcgtgcaaacttccatcccttcttgc 225
Score = 97.6 bits (49), Expect = 5e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggcggagaaaggactttgaacgagt 560
|||| |||||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 77 cttcatctacacgataataagccacacaagtgcggggtggggaaaggactttgaatgagt 18
Query: 561 tcggccggttgttgaag 577
| |||||||||||||||
Sbjct: 17 ttggccggttgttgaag 1
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 214 cttgccaccagatgttgcctccttgtcttcttt 182
>gb|BF586993.1|BF586993 FM1_32_A02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 541
Score = 163 bits (82), Expect = 1e-037
Identities = 143/163 (87%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 379 agctacaggaaaggactgttacaagggcaccagcggc---tagtccagtagagcaggact 323
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| ||||||||||||||| || | |||||||| |||||||||||||||
Sbjct: 322 attaagagggcgctggcagccagtccagtnctgatcaaggacttctggcttcatttggtg 263
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| || || ||||| ||| || ||||||||||||||||||||||
Sbjct: 262 tttttattggatgactggcgtgcaaacttccatcccttcttgc 220
Score = 87.7 bits (44), Expect = 5e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggcggagaaaggactttgaacgagt 560
|||| |||||||| |||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 72 cttcatctacacgataataagccacacaagtgcggggtggggaaaggactttgaatgagt 13
Query: 561 tcggccggttgt 572
| ||||||||||
Sbjct: 12 ttggccggttgt 1
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| ||||||||||||||||||||
Sbjct: 209 cttgccaccagatgttgcctccttgtcttcttt 177
>gb|CF482953.1|CF482953 POL1_10_G02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_10_G02_A002 3', mRNA sequence
Length = 592
Score = 161 bits (81), Expect = 4e-037
Identities = 143/163 (87%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 218 agctacaggaaaggaccgttccaagggcgccagcggcggctagtccagtagagcaggact 277
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 364 agctacaggaaaggaccgttacaagggcaccagcggc---tagtccagtagagcaggact 308
Query: 278 actaacagggcgccggcagccagtccagtcctcaccaaggactcctggcttcatttggta 337
| ||| ||||||| |||||||||| ||||||| | |||||||| |||||||||||||||
Sbjct: 307 attaagagggcgctggcagccagtgcagtcctgatcaaggacttctggcttcatttggtg 248
Query: 338 tcttgatcggatggctgccgcgcaaacttccatcccttcttgc 380
| | || ||||| ||| || ||||||||||||||||||||||
Sbjct: 247 ttgttattggatgactggcgtgcaaacttccatcccttcttgc 205
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 501 cttcgtctacacggtaataagccacacaggtgcggggcggagaaaggactttgaa 555
|||| |||||||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct: 57 cttcatctacacgataataagccacacaagtgcggggtggggaaaggactttgaa 3
Score = 42.1 bits (21), Expect = 0.28
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 376 cttgccaccagccgttgcctccttgtcttcttt 408
||||||||||| |||||||||| |||||||||
Sbjct: 194 cttgccaccagatgttgcctcctcgtcttcttt 162
>gb|CW258436.1|CW258436 104_724_11227874_148_35167_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227874, DNA
sequence
Length = 651
Score = 155 bits (78), Expect = 3e-035
Identities = 96/102 (94%)
Strand = Plus / Plus
Query: 2700 ccgcgatccccggcggtgccgcccgatcagcatgcgagcgagagcgccgcggcggcggaa 2759
|||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 256 ccgcgatccctggcggcgccgcccgatcagcaggcgaacgagagcgccgcggcggcggga 315
Query: 2760 gcggagtcggcgaggaagagggcgacacgaggcacagcattg 2801
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 316 gcggagtcggcgaggaagacggcgacacgaggcacagcattg 357
Score = 97.6 bits (49), Expect = 5e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 2641 ccctgaccggcgagccttgcactggacagacaacacactcaggcgcacattgccgccacc 2700
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 117 ccctgaccggcgagcctcgcactggacagacagcacactcaggcgcacattgctgccacc 176
Query: 2701 c 2701
|
Sbjct: 177 c 177
>gb|CW261745.1|CW261745 104_729_11229680_148_35206_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229680, DNA
sequence
Length = 710
Score = 155 bits (78), Expect = 3e-035
Identities = 96/102 (94%)
Strand = Plus / Plus
Query: 2700 ccgcgatccccggcggtgccgcccgatcagcatgcgagcgagagcgccgcggcggcggaa 2759
|||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 340 ccgcgatccctggcggcgccgcccgatcagcaggcgaacgagagcgccgcggcggcggga 399
Query: 2760 gcggagtcggcgaggaagagggcgacacgaggcacagcattg 2801
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 400 gcggagtcggcgaggaagacggcgacacgaggcacagcattg 441
Score = 97.6 bits (49), Expect = 5e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 2641 ccctgaccggcgagccttgcactggacagacaacacactcaggcgcacattgccgccacc 2700
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 201 ccctgaccggcgagcctcgcactggacagacagcacactcaggcgcacattgctgccacc 260
Query: 2701 c 2701
|
Sbjct: 261 c 261
>gb|CW320802.1|CW320802 104_813_11475206_116_35901_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475206, DNA
sequence
Length = 653
Score = 155 bits (78), Expect = 3e-035
Identities = 96/102 (94%)
Strand = Plus / Minus
Query: 2700 ccgcgatccccggcggtgccgcccgatcagcatgcgagcgagagcgccgcggcggcggaa 2759
|||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 553 ccgcgatccctggcggcgccgcccgatcagcaggcgaacgagagcgccgcggcggcggga 494
Query: 2760 gcggagtcggcgaggaagagggcgacacgaggcacagcattg 2801
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 493 gcggagtcggcgaggaagacggcgacacgaggcacagcattg 452
>gb|CW320803.1|CW320803 104_813_11475206_148_35897_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475206, DNA
sequence
Length = 652
Score = 155 bits (78), Expect = 3e-035
Identities = 96/102 (94%)
Strand = Plus / Plus
Query: 2700 ccgcgatccccggcggtgccgcccgatcagcatgcgagcgagagcgccgcggcggcggaa 2759
|||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 158 ccgcgatccctggcggcgccgcccgatcagcaggcgaacgagagcgccgcggcggcggga 217
Query: 2760 gcggagtcggcgaggaagagggcgacacgaggcacagcattg 2801
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 218 gcggagtcggcgaggaagacggcgacacgaggcacagcattg 259
Score = 97.6 bits (49), Expect = 5e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 2641 ccctgaccggcgagccttgcactggacagacaacacactcaggcgcacattgccgccacc 2700
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 19 ccctgaccggcgagcctcgcactggacagacagcacactcaggcgcacattgctgccacc 78
Query: 2701 c 2701
|
Sbjct: 79 c 79
>gb|CW403343.1|CW403343 fsbb001f095a07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095a07, DNA
sequence
Length = 581
Score = 155 bits (78), Expect = 3e-035
Identities = 96/102 (94%)
Strand = Plus / Plus
Query: 2700 ccgcgatccccggcggtgccgcccgatcagcatgcgagcgagagcgccgcggcggcggaa 2759
|||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 359 ccgcgatccctggcggcgccgcccgatcagcaggcgaacgagagcgccgcggcggcggga 418
Query: 2760 gcggagtcggcgaggaagagggcgacacgaggcacagcattg 2801
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 419 gcggagtcggcgaggaagacggcgacacgaggcacagcattg 460
Score = 97.6 bits (49), Expect = 5e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 2641 ccctgaccggcgagccttgcactggacagacaacacactcaggcgcacattgccgccacc 2700
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 220 ccctgaccggcgagcctcgcactggacagacagcacactcaggcgcacattgctgccacc 279
Query: 2701 c 2701
|
Sbjct: 280 c 280
>gb|CL174190.1|CL174190 104_378_10891419_148_31770_171 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891419, DNA
sequence
Length = 621
Score = 101 bits (51), Expect = 3e-019
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 2534 tccaggtcgtatatggggagatggtcgacatcgcctttggcagttgccatagttttatct 2593
|||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 332 tccaggtcatatatgggaagatggtcgatatcgcctttggcatttgccatagttttatct 273
Query: 2594 tcttgcacagtagctgcag 2612
| |||||| |||| |||||
Sbjct: 272 tgttgcacggtagatgcag 254
Score = 50.1 bits (25), Expect = 0.001
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 2353 ctgcgcagcaggtgcccattcacgatatacagttccatcctcatt 2397
|||| ||||||||||||||||| |||||| || ||||||||||||
Sbjct: 620 ctgcacagcaggtgcccattcatgatatatag-tccatcctcatt 577
>gb|CW406488.1|CW406488 fsbb001f099i10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f099i10, DNA
sequence
Length = 412
Score = 101 bits (51), Expect = 3e-019
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 2534 tccaggtcgtatatggggagatggtcgacatcgcctttggcagttgccatagttttatct 2593
|||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 201 tccaggtcatatatgggaagatggtcgatatcgcctttggcatttgccatagttttatct 142
Query: 2594 tcttgcacagtagctgcag 2612
| |||||| |||| |||||
Sbjct: 141 tgttgcacggtagatgcag 123
>gb|CW350851.1|CW350851 fsbb001f012f21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012f21, DNA
sequence
Length = 753
Score = 77.8 bits (39), Expect = 5e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 788 accttttcctcatcgttcatgtcgctgacgatctgctttgacgacgaaaggaaggaaaat 847
|||||||||||||| ||||||| ||| || ||||||||||| |||||||||| |||||||
Sbjct: 513 accttttcctcatcattcatgtagcttacaatctgctttgatgacgaaaggatggaaaat 572
Query: 848 ctc 850
|||
Sbjct: 573 ctc 575
>gb|CL177929.1|CL177929 104_385_10894194_116_31914_258 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894194, DNA
sequence
Length = 696
Score = 71.9 bits (36), Expect = 3e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 2630 accttccgcacccctgaccggcgagccttgcactggacagacaacacactcaggcgcaca 2689
|||||| |||| | |||||||||||||| |||||||||| ||| ||||||||| | ||||
Sbjct: 354 accttctgcactcttgaccggcgagcctcgcactggacaaacagcacactcagccacaca 413
Query: 2690 ttgccgccaccc 2701
||||| ||||||
Sbjct: 414 ttgccaccaccc 425
>gb|CW334914.1|CW334914 104_833_11482754_116_36073_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482754, DNA
sequence
Length = 733
Score = 71.9 bits (36), Expect = 3e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 2630 accttccgcacccctgaccggcgagccttgcactggacagacaacacactcaggcgcaca 2689
|||||| |||| | |||||||||||||| |||||||||| ||| ||||||||| | ||||
Sbjct: 56 accttctgcactcttgaccggcgagcctcgcactggacaaacagcacactcagccacaca 115
Query: 2690 ttgccgccaccc 2701
||||| ||||||
Sbjct: 116 ttgccaccaccc 127
>gb|CW350850.1|CW350850 fsbb001f012f21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012f21, DNA
sequence
Length = 804
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 791 ttttcctcatcgttcatgtcgctgacgatctgctttgacgacgaaaggaaggaaaatctc 850
||||||||||| ||||||| ||| || ||||||||||| |||||||||| ||||||||||
Sbjct: 697 ttttcctcatcattcatgtagcttacaatctgctttgatgacgaaaggatggaaaatctc 638
>gb|AY304540.1| Sorghum bicolor starch branching enzyme IIb (sbeIIb) mRNA, complete
cds; nuclear gene for plastid product
Length = 2664
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||||||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 1992 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 1941
>gb|BZ330167.1|BZ330167 hv90e03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv90e03 5', DNA sequence
Length = 543
Score = 50.1 bits (25), Expect = 0.001
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 2353 ctgcgcagcaggtgcccattcacgatatacagttccatcctcatt 2397
|||| ||||||||||||||||| |||||| || ||||||||||||
Sbjct: 170 ctgcacagcaggtgcccattcatgatatatag-tccatcctcatt 127
>gb|CL174189.1|CL174189 104_378_10891419_116_31771_171 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891419, DNA
sequence
Length = 586
Score = 50.1 bits (25), Expect = 0.001
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 2353 ctgcgcagcaggtgcccattcacgatatacagttccatcctcatt 2397
|||| ||||||||||||||||| |||||| || ||||||||||||
Sbjct: 463 ctgcacagcaggtgcccattcatgatatatag-tccatcctcatt 506
>gb|CW133344.1|CW133344 104_517_11116710_116_34809_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116710, DNA
sequence
Length = 602
Score = 44.1 bits (22), Expect = 0.070
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 2749 cggcggcggaagcggagtcggcgagg 2774
||||||||||||| ||||||||||||
Sbjct: 63 cggcggcggaagctgagtcggcgagg 38
>gb|CW235281.1|CW235281 104_690_11214899_116_37409_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214899, DNA
sequence
Length = 675
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2444 cttccctcattttcttcaatt 2464
|||||||||||||||||||||
Sbjct: 232 cttccctcattttcttcaatt 252
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 745,279
Number of Sequences: 832831
Number of extensions: 745279
Number of successful extensions: 208593
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 208462
Number of HSP's gapped (non-prelim): 114
length of query: 2812
length of database: 491,359,669
effective HSP length: 21
effective length of query: 2791
effective length of database: 473,870,218
effective search space: 1322571778438
effective search space used: 1322571778438
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)