BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521686.2.1
(2104 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW310684.1|CW310684 104_800_11469844_116_35752_016 Sorgh... 965 0.0
gb|CL177026.1|CL177026 104_383_10893544_148_31772_376 Sorgh... 961 0.0
gb|CW310685.1|CW310685 104_800_11469844_148_35756_016 Sorgh... 916 0.0
gb|CW353556.1|CW353556 fsbb001f016f19f0 Sorghum methylation... 880 0.0
gb|CL173375.1|CL173375 104_376_10890832_116_31795_352 Sorgh... 821 0.0
gb|BG355604.2|BG355604 EM1_19_H07.b1_A002 Embryo 1 (EM1) So... 743 0.0
gb|CW354286.1|CW354286 fsbb001f017g23f0 Sorghum methylation... 478 e-132
gb|BG356068.2|BG356068 EM1_19_H07.g1_A002 Embryo 1 (EM1) So... 369 e-100
gb|BE126227.1|BE126227 DG1_68_E06.b1_A002 Dark Grown 1 (DG1... 325 1e-086
gb|BE360988.1|BE360988 DG1_68_E06.g1_A002 Dark Grown 1 (DG1... 317 2e-084
gb|CL177025.1|CL177025 104_383_10893544_116_31773_376 Sorgh... 232 1e-058
gb|CW061290.1|CW061290 104_305_10520323_114_30152 Sorghum m... 228 2e-057
gb|CW360331.1|CW360331 fsbb001f028f24k0 Sorghum methylation... 220 4e-055
gb|CL173376.1|CL173376 104_376_10890832_148_31794_352 Sorgh... 202 1e-049
gb|CW294992.1|CW294992 104_776_11460695_116_35616_094 Sorgh... 202 1e-049
gb|CW212054.1|CW212054 104_643_11190824_148_37020_030 Sorgh... 198 1e-048
gb|CW353557.1|CW353557 fsbb001f016f19k0 Sorghum methylation... 192 9e-047
gb|CW212053.1|CW212053 104_643_11190824_116_37021_030 Sorgh... 172 9e-041
gb|CW354287.1|CW354287 fsbb001f017g23k0 Sorghum methylation... 113 7e-023
gb|CW098443.1|CW098443 104_465_11003009_116_34372_079 Sorgh... 107 4e-021
gb|CW061291.1|CW061291 104_305_10520323_115_30153 Sorghum m... 100 1e-018
gb|CW126872.1|CW126872 104_507_11113128_148_34729_084 Sorgh... 92 2e-016
gb|CF429688.1|CF429688 PH1_23_C06.g1_A002 Phosphorous-defic... 78 4e-012
gb|CF430161.1|CF430161 PH1_26_D12.g1_A002 Phosphorous-defic... 78 4e-012
gb|CW459041.1|CW459041 fsbb001f205j14f0 Sorghum methylation... 74 6e-011
gb|CW469723.1|CW469723 fsbb001f222j05f0 Sorghum methylation... 74 6e-011
gb|CW469725.1|CW469725 fsbb001f222j06f0 Sorghum methylation... 74 6e-011
gb|CW314421.1|CW314421 104_805_11471821_116_35877_061 Sorgh... 70 9e-010
gb|CL152904.1|CL152904 104_336_10780327_114_31365_343 Sorgh... 66 1e-008
gb|CL157508.1|CL157508 104_345_10783630_114_31477_190 Sorgh... 66 1e-008
gb|CW028142.1|CW028142 104_255_10498916_116_30393 Sorghum m... 66 1e-008
gb|CW121588.1|CW121588 104_499_11109987_148_34657_006 Sorgh... 66 1e-008
gb|CW278490.1|CW278490 104_752_11406575_148_35682_082 Sorgh... 66 1e-008
gb|CW304081.1|CW304081 104_788_11465588_148_35696_066 Sorgh... 66 1e-008
gb|CW479297.1|CW479297 fsbb001f237l02f0 Sorghum methylation... 66 1e-008
gb|CD204012.1|CD204012 HS1_3_B02.b1_A012 Heat-shocked seedl... 66 1e-008
gb|CD208098.1|CD208098 HS1_31_F10.b1_A012 Heat-shocked seed... 66 1e-008
gb|CD209555.1|CD209555 HS1_43_E02.b1_A012 Heat-shocked seed... 66 1e-008
gb|CD213028.1|CD213028 HS1_28_D05.b1_A012 Heat-shocked seed... 66 1e-008
gb|CW304080.1|CW304080 104_788_11465588_116_35692_066 Sorgh... 64 6e-008
gb|CW465569.1|CW465569 fsbb001f216g11f0 Sorghum methylation... 64 6e-008
gb|BE360873.1|BE360873 DG1_67_A09.g1_A002 Dark Grown 1 (DG1... 64 6e-008
gb|CL168081.1|CL168081 104_365_10810549_116_31805_229 Sorgh... 62 2e-007
gb|CW058730.1|CW058730 104_301_10518902_114_30158 Sorghum m... 62 2e-007
gb|CW072292.1|CW072292 104_325_10592185_116_30541 Sorghum m... 62 2e-007
gb|CW210728.1|CW210728 104_641_11189943_116_37005_060 Sorgh... 62 2e-007
gb|CW493939.1|CW493939 fsbb001f284p06f0 Sorghum methylation... 62 2e-007
gb|CW372798.1|CW372798 fsbb001f048n20k0 Sorghum methylation... 58 3e-006
gb|CD231774.1|CD231774 SS1_23_D03.g1_A012 Salt-stressed see... 56 1e-005
gb|BZ331488.1|BZ331488 hw08h04.b1 WGS-SbicolorF (JM107 adap... 54 5e-005
gb|BZ347161.1|BZ347161 hw09c03.b1 WGS-SbicolorF (JM107 adap... 54 5e-005
gb|CD213129.1|CD213129 HS1_28_D05.g1_A012 Heat-shocked seed... 54 5e-005
gb|CD205411.1|CD205411 HS1_14_C03.b1_A012 Heat-shocked seed... 52 2e-004
gb|CD231691.1|CD231691 SS1_23_D03.b1_A012 Salt-stressed see... 52 2e-004
gb|BZ336357.1|BZ336357 hz33e08.g1 WGS-SbicolorF (JM107 adap... 50 8e-004
gb|CW052993.1|CW052993 104_293_10515714_114_30185 Sorghum m... 50 8e-004
gb|CW053417.1|CW053417 104_293_10515954_114_30185 Sorghum m... 50 8e-004
gb|CW070931.1|CW070931 104_323_10591317_114_30473 Sorghum m... 50 8e-004
gb|CW070932.1|CW070932 104_323_10591317_116_30438 Sorghum m... 50 8e-004
gb|CW070933.1|CW070933 104_323_10591317_116_30477 Sorghum m... 50 8e-004
gb|CW464108.1|CW464108 fsbb001f213c24f0 Sorghum methylation... 50 8e-004
gb|CD222278.1|CD222278 CCC1_21_H02.b1_A007 Callus culture/c... 50 8e-004
gb|CX612930.1|CX612930 GABR1_5_F10.b1_A002 GA- or brassinol... 50 8e-004
gb|AC152913.1| Sorghum bicolor clone SB106M24, *** SEQUENCI... 50 8e-004
gb|CW236184.1|CW236184 104_692_11215479_116_37501_064 Sorgh... 48 0.003
gb|BG050259.1|BG050259 FM1_68_F08.b1_A003 Floral-Induced Me... 48 0.003
gb|BG052169.1|BG052169 RHIZ2_7_A07.b1_A003 Rhizome2 (RHIZ2)... 48 0.003
gb|BG053073.1|BG053073 RHIZ2_16_C09.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG053793.1|BG053793 RHIZ2_9_H01.b1_A003 Rhizome2 (RHIZ2)... 48 0.003
gb|BG054149.1|BG054149 OV2_1_H04.b1_A002 Ovary 2 (OV2) Sorg... 48 0.003
gb|BG054203.1|BG054203 OV2_2_F12.b1_A002 Ovary 2 (OV2) Sorg... 48 0.003
gb|BG102191.1|BG102191 RHIZ2_21_H10.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG102894.1|BG102894 RHIZ2_34_F11.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG103897.1|BG103897 RHIZ2_38_A04.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG159138.1|BG159138 RHIZ2_28_D10.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG241725.1|BG241725 RHIZ2_50_E03.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG465517.1|BG465517 RHIZ2_45_E08.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG488181.1|BG488181 RHIZ2_60_E07.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG559218.1|BG559218 RHIZ2_52_B07.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG559484.1|BG559484 RHIZ2_55_D05.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG560049.1|BG560049 RHIZ2_68_G08.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG560261.1|BG560261 RHIZ2_72_A12.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|BG560510.1|BG560510 RHIZ2_75_C11.b1_A003 Rhizome2 (RHIZ2... 48 0.003
gb|CD222892.1|CD222892 CCC1_24_F08.g1_A007 Callus culture/c... 48 0.003
gb|CD223559.1|CD223559 CCC1_28_F06.g1_A007 Callus culture/c... 48 0.003
gb|CD224369.1|CD224369 CCC1_33_F03.g1_A007 Callus culture/c... 48 0.003
gb|CD227755.1|CD227755 CCC1_53_F08.g1_A007 Callus culture/c... 48 0.003
gb|CD231651.1|CD231651 SS1_22_B09.g1_A012 Salt-stressed see... 48 0.003
gb|CD232954.1|CD232954 SS1_10_G12.g1_A012 Salt-stressed see... 48 0.003
gb|CD233075.1|CD233075 SS1_11_D01.g1_A012 Salt-stressed see... 48 0.003
gb|CD233384.1|CD233384 SS1_13_E06.g1_A012 Salt-stressed see... 48 0.003
gb|CD236062.1|CD236062 SS1_25_B02.g1_A012 Salt-stressed see... 48 0.003
gb|CD422886.1|CD422886 SA1_38_C11.g1_A002 Salicylic acid-tr... 48 0.003
gb|CN126472.1|CN126472 RHOH1_17_H02.b1_A002 Acid- and alkal... 48 0.003
gb|CN130801.1|CN130801 RHOH1_43_H05.g1_A002 Acid- and alkal... 48 0.003
gb|CN132366.1|CN132366 OX1_5_E12.g1_A002 Oxidatively-stress... 48 0.003
gb|CN138252.1|CN138252 OX1_62_D10.g1_A002 Oxidatively-stres... 48 0.003
gb|CN139678.1|CN139678 OX1_23_B01.g1_A002 Oxidatively-stres... 48 0.003
gb|CN142094.1|CN142094 WOUND1_3_G05.g1_A002 Wounded leaves ... 48 0.003
gb|CN142272.1|CN142272 WOUND1_4_H12.g1_A002 Wounded leaves ... 48 0.003
gb|CN142551.1|CN142551 WOUND1_10_E08.g1_A002 Wounded leaves... 48 0.003
gb|CN142717.1|CN142717 WOUND1_11_F04.g1_A002 Wounded leaves... 48 0.003
gb|CN144485.1|CN144485 WOUND1_22_D09.g1_A002 Wounded leaves... 48 0.003
gb|CN146579.1|CN146579 WOUND1_42_D08.b1_A002 Wounded leaves... 48 0.003
gb|CN147583.1|CN147583 WOUND1_50_E01.g1_A002 Wounded leaves... 48 0.003
gb|CN148326.1|CN148326 WOUND1_55_D07.g1_A002 Wounded leaves... 48 0.003
gb|CN148939.1|CN148939 WOUND1_59_F07.g1_A002 Wounded leaves... 48 0.003
gb|CN149498.1|CN149498 WOUND1_63_D05.b1_A002 Wounded leaves... 48 0.003
gb|DN551772.1|DN551772 pSPR-RT-A-H1_B10_C319 pSPR Sorghum p... 48 0.003
gb|AF029858.1|AF029858 Sorghum bicolor cytochrome P450 CYP7... 48 0.003
gb|CW312952.1|CW312952 104_803_11471032_148_35791_064 Sorgh... 46 0.013
gb|CD462359.1|CD462359 ETH1_37_C04.b1_A002 Ethylene-treated... 46 0.013
gb|CN149698.1|CN149698 WOUND1_64_H02.b1_A002 Wounded leaves... 46 0.013
gb|CW267936.1|CW267936 104_738_11401009_148_35297_007 Sorgh... 44 0.052
gb|CW309882.1|CW309882 104_798_11469425_148_36240_065 Sorgh... 44 0.052
gb|CW413041.1|CW413041 fsbb001f108p22f0 Sorghum methylation... 44 0.052
gb|CD424025.1|CD424025 SA1_3_C01.b1_A002 Salicylic acid-tre... 44 0.052
gb|CL154685.1|CL154685 104_340_10781586_114_31469_066 Sorgh... 42 0.21
gb|CW041649.1|CW041649 104_275_10506669_114_30284 Sorghum m... 42 0.21
gb|CW041650.1|CW041650 104_275_10506669_115_30285 Sorghum m... 42 0.21
gb|CW059885.1|CW059885 104_303_10519564_5_30087 Sorghum met... 42 0.21
gb|CW161466.1|CW161466 104_568_11150430_116_36436_025 Sorgh... 42 0.21
gb|CW161467.1|CW161467 104_568_11150430_148_36435_025 Sorgh... 42 0.21
gb|CW237738.1|CW237738 104_694_11216340_116_37489_044 Sorgh... 42 0.21
gb|CW256586.1|CW256586 104_721_11226871_116_35138_020 Sorgh... 42 0.21
gb|CW263276.1|CW263276 104_731_11230595_116_35213_042 Sorgh... 42 0.21
gb|CW303594.1|CW303594 104_788_11465324_116_35694_078 Sorgh... 42 0.21
gb|CW360087.1|CW360087 fsbb001f028a07k0 Sorghum methylation... 42 0.21
gb|CW425828.1|CW425828 fsbb001f136o21k0 Sorghum methylation... 42 0.21
gb|CW456102.1|CW456102 fsbb001f201e22f0 Sorghum methylation... 42 0.21
gb|CW485366.1|CW485366 fsbb001f248b06f0 Sorghum methylation... 42 0.21
gb|CW485367.1|CW485367 fsbb001f248b06k0 Sorghum methylation... 42 0.21
gb|CW486879.1|CW486879 fsbb001f252g15f0 Sorghum methylation... 42 0.21
gb|BE357213.1|BE357213 DG1_147_D08.g1_A002 Dark Grown 1 (DG... 42 0.21
gb|BE357224.1|BE357224 DG1_147_C08.g1_A002 Dark Grown 1 (DG... 42 0.21
gb|BE357225.1|BE357225 DG1_147_C07.g1_A002 Dark Grown 1 (DG... 42 0.21
gb|BE363941.1|BE363941 PI1_10_B07.g1_A002 Pathogen induced ... 42 0.21
gb|CF430593.1|CF430593 NIT1_3_A05.b1_A002 Nitrogen-deficien... 42 0.21
gb|CX610538.1|CX610538 ANR1_19_G09.b1_A002 Anaerobic roots ... 42 0.21
gb|CX611043.1|CX611043 ANR1_22_G05.b1_A002 Anaerobic roots ... 42 0.21
gb|CX611163.1|CX611163 ANR1_23_B06.b1_A002 Anaerobic roots ... 42 0.21
gb|CX611820.1|CX611820 ANR1_26_H10.g1_A002 Anaerobic roots ... 42 0.21
>gb|CW310684.1|CW310684 104_800_11469844_116_35752_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469844, DNA
sequence
Length = 677
Score = 965 bits (487), Expect = 0.0
Identities = 631/674 (93%), Gaps = 10/674 (1%)
Strand = Plus / Minus
Query: 1158 cgatgacgccacggacgaa-ggtctggacgcgcggcacgagcgcggcgcaccggcgggtg 1216
||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||
Sbjct: 677 cgatgacgccacg-acgaaaggtctggacgcgcgggacgagcgcggcgcagcggcgggtg 619
Query: 1217 acgttgcttgggtcgtacaggtgggcgagccaggggaggtggtcggaccagttgaaggcg 1276
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acgttgctggggtcgtacaggtgggcgagccaggggaggtggtcggaccagttgaaggcg 559
Query: 1277 ccgaggagctcgaacccctcgcgcaccatgctcttgagatgctcggcctccgcggcgccg 1336
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 558 ccgaggagctcgaacccctcgcgcaccatgctcttgagctgctcggcctccgcggcgccg 499
Query: 1337 gcg------cctgatgtgacgtcgtaccgcgtgccgaagacgctgcccatgatgttgttg 1390
||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 498 gcggtggcgccggatgtgacgtcgtatcgcgtgccgaagacgctgcccatgatgttgttg 439
Query: 1391 agagcggcggcctggaggtgcgggcggagggcgacggcgccagaggccgactgttcggcg 1450
|||||||||||||||||||||||||||||| |||||| ||| ||||| ||||| ||||||
Sbjct: 438 agagcggcggcctggaggtgcgggcggaggacgacggtgcccgaggcggactgctcggcg 379
Query: 1451 gcgatggagcggagcatggcctccgcgtcaccttggcgtcccggctcgtgcgaggcgacc 1510
|||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 378 gcgacggagcggagcatggcctccgcgtcgccctggcgtcccggctcgtgcgcggcgacg 319
Query: 1511 cggcgcggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccg 1570
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cggcgcggggagaagaggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccg 259
Query: 1571 ttgggcgcgaacccgatggcacgcgcgaacatgagctcccgggccgaccgcttcacaggg 1630
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 258 ttgggcgcgaacccgatggcgcgcgcgaacatgagctcccgcgccgaccgcttcacgggg 199
Query: 1631 cggtcggcgaatgacgggtgcgcgagcacctcacgtgccgtggccgggcaggacgacacg 1690
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 198 cggtcggcgaaggacgggtgcgcgagcacctcacgcgccgtggccgggcacgacgacacg 139
Query: 1691 accgcgggcgtgtcaccgacggagaacgccatgagctccttggcccgggg-cctgcggcg 1749
||||| |||||||| ||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 138 accgccggcgtgtccccgacggagaacgccatgagctccttggcccggggccccgccgcg 79
Query: 1750 cgggccatctcggcgagggcgcggtgcggcag-ccccgggacagcgcgaagatgctgccg 1808
||||||||| ||||||||| ||||||||||| || ||||| ||||||||||||||||||
Sbjct: 78 cgggccatcgcggcgagggtacggtgcggcagaccgcgggagagcgcgaagatgctgccg 19
Query: 1809 aacacgggcagacc 1822
|||||||| |||||
Sbjct: 18 aacacggggagacc 5
>gb|CL177026.1|CL177026 104_383_10893544_148_31772_376 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893544, DNA
sequence
Length = 656
Score = 961 bits (485), Expect = 0.0
Identities = 594/629 (94%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 406 ggatcaggcggtgcgggggatggctgcggcgacgagcggcgtcttcat-ctccagggaga 464
|||||| |||||||| |||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 655 ggatcatgcggtgcgcgggatggccgcggcggcgagcggcgtcttcattctccagggaga 596
Query: 465 gcttgaggacctcgtcgaggcaaacggccgccgcgccgtcaggcagggcccactggaagg 524
|||||||||||||||||||||| |||| || |||||| |||||||| ||||||| |||||
Sbjct: 595 gcttgaggacctcgtcgaggcagacgggcggcgcgccatcaggcagcgcccactcgaagg 536
Query: 525 cgtgcacgaggcgggcaacccagaggcccacggtggtgaggcccaggttcttgccggggc 584
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 535 cgtgcacgaggcgggcgacccagaggcccacggtggtgagccccaggttcttgccggggc 476
Query: 585 agacgcgacgcccggcgccgaacggggccaggcggaggtcgacgccgcggacgtccacgt 644
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 475 agacgcggcgcccggcgccgaacggtgccaggcggaggtcgacgccgcggacgtccacgt 416
Query: 645 cggcgccgccctcggagggcaggaaccgctccggcgcgaacgcgtccgggtcggcccaca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cggcgccgccctcggagggcaggaaccgctccggcgcgaacgcgtccgggtcggcccaca 356
Query: 705 cggcggcatcgtgggttatggcccacatattcaccatcgccgtggtgccagccgggacca 764
|| |||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 355 cgccggcgtcgtgggtgatggcccacatgttcaccatcgccgtggtgccggccgggacca 296
Query: 765 ccatgccgttgcagagtggcacgtcggcggtggcgaggcgagcccagctcagcagcgggc 824
||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 295 ccatgccgttggagaggggcacgtcggcggtggcgaggcgcgcccagctcagcagcgggc 236
Query: 825 caggcgggtgggcgcgcagcgtctccttcacaaccgcctgcaggtacggcatgcgcgcca 884
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 235 caggcgggtgcgctcgcagcgtctccttcacgaccgcctgcaggtacggcatgcgcgcca 176
Query: 885 cgtcggcgtcggtggggcaacctccggcaccgacagccgcgtcgacctcggcgcgcaccc 944
|||||||||||||||||| ||| ||||| |||||||| ||||| |||||||| |||| ||
Sbjct: 175 cgtcggcgtcggtggggcgaccgccggcgccgacagctgcgtccacctcggcccgcagcc 116
Query: 945 tcgcctgcaccgccgggtggcgcaccagctccgccatgcaccactcggtcagaagcgccg 1004
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 115 tcgcctgcaccgccgggtggcgcaccagctccgccatgcaccactccgtcagaagcgccg 56
Query: 1005 tcgtgtccgtaccgcggaagaccatctcc 1033
||||||||||||||||||||| |||||||
Sbjct: 55 tcgtgtccgtaccgcggaagatcatctcc 27
>gb|CW310685.1|CW310685 104_800_11469844_148_35756_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469844, DNA
sequence
Length = 626
Score = 916 bits (462), Expect = 0.0
Identities = 568/604 (94%), Gaps = 12/604 (1%)
Strand = Plus / Plus
Query: 1032 cccagaggatggcgaccatgtcgtcgtcgccgagcttctcgtcaccctcgagggagagga 1091
|||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct: 23 cccagaggatggcgaccatgtcgtcgtcgcggagcttctcgtcgccgtcgagggagagga 82
Query: 1092 gcacgtcgacgaagtcagcattgtcgttgagg------gcggcggagttttggcggcggc 1145
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 83 gcacgtagacgaagtcagcattgtcgttgaggtcgagggcggcggagttttggcggcggc 142
Query: 1146 gccggtgctcgtcgatgacgccacggacgaaggtctggacgcgcggcacgagcgcggcgc 1205
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 143 gccggtgctcgtcgatgacgccacggacgaaggtctggacgcgcgggacgagcgcggcgc 202
Query: 1206 accggcgggtgacgttgcttgggtcgtacaggtgggcgagccaggggaggtggtcggacc 1265
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agcggcgggtgacgttgctggggtcgtacaggtgggcgagccaggggaggtggtcggacc 262
Query: 1266 agttgaaggcgccgaggagctcgaacccctcgcgcaccatgctcttgagatgctcggcct 1325
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 agttgaaggcgccgaggagctcgaacccctcgcgcaccatgctcttgagctgctcggcct 322
Query: 1326 ccgcggcgccggcg------cctgatgtgacgtcgtaccgcgtgccgaagacgctgccca 1379
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 323 ccgcggcgccggcggtggcgccggatgtgacgtcgtatcgcgtgccgaagacgctgccca 382
Query: 1380 tgatgttgttgagagcggcggcctggaggtgcgggcggagggcgacggcgccagaggccg 1439
||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |
Sbjct: 383 tgatgttgttgagagcggcggcctggaggtgcgggcggaggacgacggtgcccgaggcgg 442
Query: 1440 actgttcggcggcgatggagcggagcatggcctccgcgtcaccttggcgtcccggctcgt 1499
|||| |||||||||| |||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 443 actgctcggcggcgacggagcggagcatggcctccgcgtcgccctggcgtcccggctcgt 502
Query: 1500 gcgaggcgacccggcgcggggagaataggtgcgtggacgcgacgcggcggaggcggcgcc 1559
||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 503 gcgcggcgacgcggcgcggggagaagaggtgcgtggacgcgacgcggcggatgcggcgcc 562
Query: 1560 agtactcgccgttgggcgcgaacccgatggcacgcgcgaacatgagctcccgggccgacc 1619
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 563 agtactcgccgttgggcgcgaacccgatggcgcgcgcgaacatgagctcccgcgccgacc 622
Query: 1620 gctt 1623
||||
Sbjct: 623 gctt 626
>gb|CW353556.1|CW353556 fsbb001f016f19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016f19, DNA
sequence
Length = 592
Score = 880 bits (444), Expect = 0.0
Identities = 543/576 (94%)
Strand = Plus / Minus
Query: 396 gcggcaggacggatcaggcggtgcgggggatggctgcggcgacgagcggcgtcttcatct 455
||||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 576 gcggcaggatggatcatgcggtgcgcgggatggccgcggcggcgagcggcgtcttcatct 517
Query: 456 ccagggagagcttgaggacctcgtcgaggcaaacggccgccgcgccgtcaggcagggccc 515
||||||||||||||||||||||||||||||| |||| || |||||| |||||||| ||||
Sbjct: 516 ccagggagagcttgaggacctcgtcgaggcagacgggcggcgcgccatcaggcagcgccc 457
Query: 516 actggaaggcgtgcacgaggcgggcaacccagaggcccacggtggtgaggcccaggttct 575
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 456 actcgaaggcgtgcacgaggcgggcgacccagaggcccacggtggtgagccccaggttct 397
Query: 576 tgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtcgacgccgcgga 635
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 396 tgccggggcagacgcggcgcccggcgccgaacggtgccaggcggaggtcgacgccgcgga 337
Query: 636 cgtccacgtcggcgccgccctcggagggcaggaaccgctccggcgcgaacgcgtccgggt 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cgtccacgtcggcgccgccctcggagggcaggaaccgctccggcgcgaacgcgtccgggt 277
Query: 696 cggcccacacggcggcatcgtgggttatggcccacatattcaccatcgccgtggtgccag 755
||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 276 cggcccacacgccggcgtcgtgggtgatggcccacatgttcaccatcgccgtggtgccgg 217
Query: 756 ccgggaccaccatgccgttgcagagtggcacgtcggcggtggcgaggcgagcccagctca 815
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct: 216 ccgggaccaccatgccgttggagaggggcacgtcggcggtggcgaggcgcgcccagctca 157
Query: 816 gcagcgggccaggcgggtgggcgcgcagcgtctccttcacaaccgcctgcaggtacggca 875
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 156 gcagcgggccaggcgggtgcgctcgcagcgtctccttcacgaccgcctgcaggtacggca 97
Query: 876 tgcgcgccacgtcggcgtcggtggggcaacctccggcaccgacagccgcgtcgacctcgg 935
||||||||||||||||||||||||||| ||| ||||| |||||||| ||||| |||||||
Sbjct: 96 tgcgcgccacgtcggcgtcggtggggcgaccgccggcgccgacagctgcgtccacctcgg 37
Query: 936 cgcgcaccctcgcctgcaccgccgggtggcgcacca 971
| |||| |||||||||||||||||||||||||||||
Sbjct: 36 cccgcagcctcgcctgcaccgccgggtggcgcacca 1
>gb|CL173375.1|CL173375 104_376_10890832_116_31795_352 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890832, DNA
sequence
Length = 596
Score = 821 bits (414), Expect = 0.0
Identities = 507/538 (94%)
Strand = Plus / Minus
Query: 496 cgcgccgtcaggcagggcccactggaaggcgtgcacgaggcgggcaacccagaggcccac 555
|||||| |||||||| ||||||| | ||||||||||||||||| | ||||||||||||||
Sbjct: 596 cgcgccatcaggcagcgcccactcgcaggcgtgcacgaggcggtcgacccagaggcccac 537
Query: 556 ggtggtgaggcccaggttcttgccggggcagacgcgacgcccggcgccgaacggggccag 615
||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct: 536 ggtggtgagccccaggttctcgccggggcagacgcggcgcccggcgccgaacggtgccag 477
Query: 616 gcggaggtcgacgccgcggacgtccacgtcggcgccgccctcggagggcaggaaccgctc 675
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gcggaggtagacgccgcggacgtccacgtcggcgccgccctcggagggcaggaaccgctc 417
Query: 676 cggcgcgaacgcgtccgggtcggcccacacggcggcatcgtgggttatggcccacatatt 735
||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||
Sbjct: 416 cggcgcgaacgcgtccgggtcggcccacacgccggcgtcgtgggtgatggcccacatgtt 357
Query: 736 caccatcgccgtggtgccagccgggaccaccatgccgttgcagagtggcacgtcggcggt 795
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 356 caccatcgccgtggtgccggccgggaccaccatgccgttggagaggggcacgtcggcggt 297
Query: 796 ggcgaggcgagcccagctcagcagcgggccaggcgggtgggcgcgcagcgtctccttcac 855
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 296 ggcgaggcgcgcccagctcagcagcgggccaggcgggtgcgctcgcagcgtctccttcac 237
Query: 856 aaccgcctgcaggtacggcatgcgcgccacgtcggcgtcggtggggcaacctccggcacc 915
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct: 236 gaccgcctgcaggtacggcatgcgcgccacgtcggcgtcggtggggcgaccgccggcgcc 177
Query: 916 gacagccgcgtcgacctcggcgcgcaccctcgcctgcaccgccgggtggcgcaccagctc 975
|||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 176 gacagctgcgtccacctcggcccgcagcctcgcctgcaccgccgggtggcgcaccagctc 117
Query: 976 cgccatgcaccactcggtcagaagcgccgtcgtgtccgtaccgcggaagaccatctcc 1033
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 116 cgccatgcaccactccgtcagaagcgccgtcgtgtccgtaccgcggaagatcatctcc 59
>gb|BG355604.2|BG355604 EM1_19_H07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 533
Score = 743 bits (375), Expect = 0.0
Identities = 485/519 (93%), Gaps = 2/519 (0%)
Strand = Plus / Minus
Query: 1336 ggcgcctgatgtgacgtcgtaccgcgtgccgaagacgctgcccatgatgttgttgagagc 1395
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggcgccggatgtgacgtcgtatcgcgtgccgaagacgctgcccatgatgttgttgagagc 460
Query: 1396 ggcggcctggaggtgcgggcggagggcgacggcgccagaggccgactgttcggcggcgat 1455
||||||||||||||||||||||||| |||||| ||| ||||| ||||| ||||||||||
Sbjct: 459 ggcggcctggaggtgcgggcggaggacgacggtgcccgaggcggactgctcggcggcgac 400
Query: 1456 ggagcggagcatggcctccgcgtcaccttggcgtcccggctcgtgcgaggcgacccggcg 1515
|||||||||||||||||||||||| || ||||||||||||||||||| |||||| |||||
Sbjct: 399 ggagcggagcatggcctccgcgtcgccctggcgtcccggctcgtgcgcggcgacgcggcg 340
Query: 1516 cggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgttggg 1575
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cggggagaagaggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgttggg 280
Query: 1576 cgcgaacccgatggcacgcgcgaacatgagctcccgggccgaccgcttcacagggcggtc 1635
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 279 cgcgaacccgatggcgcgcgcgaacatgagctcccgcgccgaccgcttcacggggcggtc 220
Query: 1636 ggcgaatgacgggtgcgcgagcacctcacgtgccgtggccgggcaggacgacacgaccgc 1695
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 219 ggcgaaggacgggtgcgcgagcacctcacgcgccgtggccgggcacgacgacacgaccgc 160
Query: 1696 gggcgtgtcaccgacggagaacgccatgagctccttggcccgggg-cctgcggcgcgggc 1754
|||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 159 cggcgtgtccccgacggagaacgccatgagctccttggcccggggccccgccgcgcgggc 100
Query: 1755 catctcggcgagggcgcggtgcggcag-ccccgggacagcgcgaagatgctgccgaacac 1813
|||| ||||||||| ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 99 catcgcggcgagggtacggtgcggcagaccgcgggagagcgcgaagatgctgccgaacac 40
Query: 1814 gggcagaccacggggtcccacgataggagtgacgccgag 1852
||| ||||| ||||| ||||||||||||||| |||||||
Sbjct: 39 ggggagaccccggggacccacgataggagtggcgccgag 1
>gb|CW354286.1|CW354286 fsbb001f017g23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f017g23, DNA
sequence
Length = 392
Score = 478 bits (241), Expect = e-132
Identities = 288/304 (94%), Gaps = 6/304 (1%)
Strand = Plus / Plus
Query: 1032 cccagaggatggcgaccatgtcgtcgtcgccgagcttctcgtcaccctcgagggagagga 1091
|||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct: 89 cccagaggatggcgaccatgtcgtcgtcgcggagcttctcgtcgccgtcgagggagagga 148
Query: 1092 gcacgtcgacgaagtcagcattgtcgttgagg------gcggcggagttttggcggcggc 1145
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 149 gcacgtagacgaagtcagcattgtcgttgaggtcgagggcggcggagttttggcggcggc 208
Query: 1146 gccggtgctcgtcgatgacgccacggacgaaggtctggacgcgcggcacgagcgcggcgc 1205
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 209 gccggtgctcgtcgatgacgccacggacgaaggtctggacgcgcgggacgagcgcggcgc 268
Query: 1206 accggcgggtgacgttgcttgggtcgtacaggtgggcgagccaggggaggtggtcggacc 1265
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 269 agcggcgggtgacgttgctggggtcgtacaggtgggcgagccaggggaggcggtcggacc 328
Query: 1266 agttgaaggcgccgaggagctcgaacccctcgcgcaccatgctcttgagatgctcggcct 1325
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 329 agttgaaggcgccgaggagctccaacccctcgcgcaccatgctcttgagctgctcggcct 388
Query: 1326 ccgc 1329
||||
Sbjct: 389 ccgc 392
>gb|BG356068.2|BG356068 EM1_19_H07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 369 bits (186), Expect = e-100
Identities = 231/246 (93%)
Strand = Plus / Minus
Query: 396 gcggcaggacggatcaggcggtgcgggggatggctgcggcgacgagcggcgtcttcatct 455
||||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 246 gcggcaggatggatcatgcggtgcgcgggatggccgcggcggcgagcggcgtcttcatct 187
Query: 456 ccagggagagcttgaggacctcgtcgaggcaaacggccgccgcgccgtcaggcagggccc 515
||||||||||||||||||||||||||||||| |||| || |||||| |||||||| ||||
Sbjct: 186 ccagggagagcttgaggacctcgtcgaggcagacgggcggcgcgccatcaggcagcgccc 127
Query: 516 actggaaggcgtgcacgaggcgggcaacccagaggcccacggtggtgaggcccaggttct 575
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 126 actcgaaggcgtgcacgaggcgggcgacccagaggcccacggtggtgagccccaggttct 67
Query: 576 tgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtcgacgccgcgga 635
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 66 tgccggggcagacgcggcgcccggcgccgaacggtgccaggcggaggtcgacgccgcgga 7
Query: 636 cgtcca 641
||||||
Sbjct: 6 cgtcca 1
Score = 141 bits (71), Expect = 3e-031
Identities = 191/227 (84%), Gaps = 13/227 (5%)
Strand = Plus / Minus
Query: 102 tgactggtcgacaaacactgatctatatgtagtttctgcgctgatactga--tgggtggt 159
|||||| |||||| |||||||||||||| ||| | ||||||||||| ||| | | |||
Sbjct: 563 tgactgatcgacagacactgatctatatataggtgctgcgctgataatgacatagtaggt 504
Query: 160 ggcgatcaagacgcaaacatgtctaggggttaactcctaacacgcagctttccaaaattg 219
|| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 ggtgatcgagacgcagacatgtctaggggttaactcctaacacgcacctttccaaaattg 444
Query: 220 gagccccggtgatggtgagactaag----acacactcactaccttgcaagaaaccaaacc 275
|||||||| |||| || ||||| |||| ||||||| ||||||||||| |||||
Sbjct: 443 gagccccgttgat---gactctaagggagacactgtcactactttgcaagaaacgaaacc 387
Query: 276 ctaggctaaggtggaggcac--gaacgaaccgacgatcgagaagaag 320
|||||| ||| | |||||| |||||||||||||||||| ||||||
Sbjct: 386 ctaggcaaag--gcaggcacgagaacgaaccgacgatcgacaagaag 342
>gb|BE126227.1|BE126227 DG1_68_E06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 223
Score = 325 bits (164), Expect = 1e-086
Identities = 208/223 (93%), Gaps = 6/223 (2%)
Strand = Plus / Minus
Query: 1180 ctggacgcgcggcacgagcgcggcgcaccggcgggtgacgttgcttgggtcgtacaggtg 1239
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 223 ctggacgcgcgggacgagcgcggcgcagcggcgggtgacgttgctggggtcgtacaggtg 164
Query: 1240 ggcgagccaggggaggtggtcggaccagttgaaggcgccgaggagctcgaacccctcgcg 1299
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 163 ggcgacccaggggaggtggtcggaccagttgaaggcgcagaggagctcgaacccctcgcg 104
Query: 1300 caccatgctcttgagatgctcggcctccgcggcgcc------ggcgcctgatgtgacgtc 1353
||||||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct: 103 caccatgctcttgagctgctcggcctccgcggcgccggcggtggcgccggatgtgacgtc 44
Query: 1354 gtaccgcgtgccgaagacgctgcccatgatgttgttgagagcg 1396
||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 43 gtatcgcgtgccgaagacgctgcccatgacgttgttgagagcg 1
>gb|BE360988.1|BE360988 DG1_68_E06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 624
Score = 317 bits (160), Expect = 2e-084
Identities = 205/220 (93%)
Strand = Plus / Minus
Query: 396 gcggcaggacggatcaggcggtgcgggggatggctgcggcgacgagcggcgtcttcatct 455
||||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 220 gcggcaggatggatcatgcggtgcgcgggatggccgcggcggcgagcggcgtcttcatct 161
Query: 456 ccagggagagcttgaggacctcgtcgaggcaaacggccgccgcgccgtcaggcagggccc 515
||||||||||||||||||||||||||||||| |||| || |||||| |||||||| ||||
Sbjct: 160 ccagggagagcttgaggacctcgtcgaggcagacgggcggcgcgccatcaggcagcgccc 101
Query: 516 actggaaggcgtgcacgaggcgggcaacccagaggcccacggtggtgaggcccaggttct 575
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 100 actcgaaggcgtgcacgaggcgggcgacccagaggcccacggtggtgagccccaggttct 41
Query: 576 tgccggggcagacgcgacgcccggcgccgaacggggccag 615
|||||||||||||||| ||||||||||||||||| |||||
Sbjct: 40 tgccggggcagacgcggcgcccggcgccgaacggtgccag 1
Score = 200 bits (101), Expect = 4e-049
Identities = 260/308 (84%), Gaps = 20/308 (6%)
Strand = Plus / Minus
Query: 23 atagcacggttcttgataatcacattacaatacatatatatgtatataatacatcagact 82
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 613 atagcacggttcttgataatcacattacaatacat-----tatatataatacagcagact 559
Query: 83 tgagagcaca--cgacttccatgactggtcgacaaacactgatctatatgtagtttctgc 140
|||| ||| ||||||||||||||| |||||| |||||||||||||| ||| | ||||
Sbjct: 558 tgagcacacgatcgacttccatgactgatcgacagacactgatctatatataggtgctgc 499
Query: 141 gctgatactga--tgggtggtggcgatcaagacgcaaacatgtctaggggttaactccta 198
||||||| ||| | | ||||| |||| ||||||| |||||||||||||||||||||||
Sbjct: 498 gctgataatgacatagtaggtggtgatcgagacgcagacatgtctaggggttaactccta 439
Query: 199 acacgcagctttccaaaattggagccccggtgatggtgagactaag----acacactcac 254
||||||| ||||||||||||||||||||| |||| || ||||| |||| ||||
Sbjct: 438 acacgcacctttccaaaattggagccccgttgat---gactctaagggagacactgtcac 382
Query: 255 taccttgcaagaaaccaaaccctaggctaaggtggaggcac--gaacgaaccgacgatcg 312
||| ||||||||||| ||||||||||| ||| | |||||| |||||||||||||||||
Sbjct: 381 tactttgcaagaaacgaaaccctaggcaaag--gcaggcacgagaacgaaccgacgatcg 324
Query: 313 agaagaag 320
| ||||||
Sbjct: 323 acaagaag 316
>gb|CL177025.1|CL177025 104_383_10893544_116_31773_376 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893544, DNA
sequence
Length = 756
Score = 232 bits (117), Expect = 1e-058
Identities = 156/169 (92%)
Strand = Plus / Plus
Query: 396 gcggcaggacggatcaggcggtgcgggggatggctgcggcgacgagcggcgtcttcatct 455
||||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 585 gcggcaggatggatcatgcggtgcgcgggatggccgcggcggcgagcggcgtcttcatct 644
Query: 456 ccagggagagcttgaggacctcgtcgaggcaaacggccgccgcgccgtcaggcagggccc 515
||||||||||||||||||||||||||||||| |||| || |||||| |||||||| ||||
Sbjct: 645 ccagggagagcttgaggacctcgtcgaggcagacgggcggcgcgccatcaggcagcgccc 704
Query: 516 actggaaggcgtgcacgaggcgggcaacccagaggcccacggtggtgag 564
||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 705 actcgaaggcgtgcacgaagcgggcgacccagaggcccacggtggtgag 753
Score = 200 bits (101), Expect = 4e-049
Identities = 260/308 (84%), Gaps = 20/308 (6%)
Strand = Plus / Plus
Query: 23 atagcacggttcttgataatcacattacaatacatatatatgtatataatacatcagact 82
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 192 atagcacggttcttgataatcacattacaatacat-----tatatataatacagcagact 246
Query: 83 tgagagcaca--cgacttccatgactggtcgacaaacactgatctatatgtagtttctgc 140
|||| ||| ||||||||||||||| |||||| |||||||||||||| ||| | ||||
Sbjct: 247 tgagcacacgatcgacttccatgactgatcgacagacactgatctatatataggtgctgc 306
Query: 141 gctgatactga--tgggtggtggcgatcaagacgcaaacatgtctaggggttaactccta 198
||||||| ||| | | ||||| |||| ||||||| |||||||||||||||||||||||
Sbjct: 307 gctgataatgacatagtaggtggtgatcgagacgcagacatgtctaggggttaactccta 366
Query: 199 acacgcagctttccaaaattggagccccggtgatggtgagactaag----acacactcac 254
||||||| ||||||||||||||||||||| |||| || ||||| |||| ||||
Sbjct: 367 acacgcacctttccaaaattggagccccgttgat---gactctaagggagacactgtcac 423
Query: 255 taccttgcaagaaaccaaaccctaggctaaggtggaggcac--gaacgaaccgacgatcg 312
||| ||||||||||| ||||||||||| ||| | |||||| |||||||||||||||||
Sbjct: 424 tactttgcaagaaacgaaaccctaggcaaag--gcaggcacgagaacgaaccgacgatcg 481
Query: 313 agaagaag 320
| ||||||
Sbjct: 482 acaagaag 489
>gb|CW061290.1|CW061290 104_305_10520323_114_30152 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520323, DNA
sequence
Length = 623
Score = 228 bits (115), Expect = 2e-057
Identities = 151/163 (92%)
Strand = Plus / Minus
Query: 396 gcggcaggacggatcaggcggtgcgggggatggctgcggcgacgagcggcgtcttcatct 455
||||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 163 gcggcaggatggatcatgcggtgcgcgggatggccgcggcggcgagcggcgtcttcatct 104
Query: 456 ccagggagagcttgaggacctcgtcgaggcaaacggccgccgcgccgtcaggcagggccc 515
||||||||||||||||||||||||||||||| |||| || |||||| |||||||| ||||
Sbjct: 103 ccagggagagcttgaggacctcgtcgaggcagacgggcggcgcgccatcaggcagcgccc 44
Query: 516 actggaaggcgtgcacgaggcgggcaacccagaggcccacggt 558
||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 43 actcgaaggcgtgcacgaggcgggcgacccagaggcccacggt 1
Score = 200 bits (101), Expect = 4e-049
Identities = 260/308 (84%), Gaps = 20/308 (6%)
Strand = Plus / Minus
Query: 23 atagcacggttcttgataatcacattacaatacatatatatgtatataatacatcagact 82
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 556 atagcacggttcttgataatcacattacaatacat-----tatatataatacagcagact 502
Query: 83 tgagagcaca--cgacttccatgactggtcgacaaacactgatctatatgtagtttctgc 140
|||| ||| ||||||||||||||| |||||| |||||||||||||| ||| | ||||
Sbjct: 501 tgagcacacgatcgacttccatgactgatcgacagacactgatctatatataggtgctgc 442
Query: 141 gctgatactga--tgggtggtggcgatcaagacgcaaacatgtctaggggttaactccta 198
||||||| ||| | | ||||| |||| ||||||| |||||||||||||||||||||||
Sbjct: 441 gctgataatgacatagtaggtggtgatcgagacgcagacatgtctaggggttaactccta 382
Query: 199 acacgcagctttccaaaattggagccccggtgatggtgagactaag----acacactcac 254
||||||| ||||||||||||||||||||| |||| || ||||| |||| ||||
Sbjct: 381 acacgcacctttccaaaattggagccccgttgat---gactctaagggagacactgtcac 325
Query: 255 taccttgcaagaaaccaaaccctaggctaaggtggaggcac--gaacgaaccgacgatcg 312
||| ||||||||||| ||||||||||| ||| | |||||| |||||||||||||||||
Sbjct: 324 tactttgcaagaaacgaaaccctaggcaaag--gcaggcacgagaacgaaccgacgatcg 267
Query: 313 agaagaag 320
| ||||||
Sbjct: 266 acaagaag 259
>gb|CW360331.1|CW360331 fsbb001f028f24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028f24, DNA
sequence
Length = 591
Score = 220 bits (111), Expect = 4e-055
Identities = 220/255 (86%), Gaps = 6/255 (2%)
Strand = Plus / Minus
Query: 1137 ggcggcggcgccggtgctcgtcgatgacgccacggacgaaggtctggacgcgcggcacga 1196
|||||||| | | ||||||||||||||| |||| |||| ||||||||| ||| |||||||
Sbjct: 555 ggcggcggtggcagtgctcgtcgatgacaccacagacggaggtctggatgcgtggcacga 496
Query: 1197 gcgcggcgcaccggcgggtgacgttgcttgggtcgtacaggtgggcgagccaggggaggt 1256
| | ||||| | |||| ||| |||||| ||||||||||||||||||||||||| |
Sbjct: 495 gaacagcgcagcagcggatgatgttgctagggtcgtacaggtgggcgagccagg-----t 441
Query: 1257 ggtcggaccagttgaaggcgccgaggagctcgaacccctcgcgcaccatgctcttgagat 1316
|||| ||||| |||||||||||||| |||||||||||||| ||||||| ||||||||| |
Sbjct: 440 ggtccgaccaattgaaggcgccgag-agctcgaacccctcacgcaccacgctcttgagct 382
Query: 1317 gctcggcctccgcggcgccggcgcctgatgtgacgtcgtaccgcgtgccgaagacgctgc 1376
|||||||||| ||||||||| |||| |||||||||||||| | |||||| ||||||||||
Sbjct: 381 gctcggcctcggcggcgccgacgccggatgtgacgtcgtatcacgtgccaaagacgctgc 322
Query: 1377 ccatgatgttgttga 1391
||||| | |||||||
Sbjct: 321 ccatggtattgttga 307
>gb|CL173376.1|CL173376 104_376_10890832_148_31794_352 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890832, DNA
sequence
Length = 737
Score = 202 bits (102), Expect = 1e-049
Identities = 138/150 (92%)
Strand = Plus / Plus
Query: 396 gcggcaggacggatcaggcggtgcgggggatggctgcggcgacgagcggcgtcttcatct 455
||||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 588 gcggcaggatggatcatgcggtgcgcgggatggccgcggcggcgagcggcgtcttcatct 647
Query: 456 ccagggagagcttgaggacctcgtcgaggcaaacggccgccgcgccgtcaggcagggccc 515
||||||||||||||||||||||||||||||| |||| || |||||| |||||||| ||||
Sbjct: 648 ccagggagagcttgaggacctcgtcgaggcagacgggcggcgcgccatcaggcagcgccc 707
Query: 516 actggaaggcgtgcacgaggcgggcaaccc 545
||| ||||||||||||||||||||| ||||
Sbjct: 708 actcgaaggcgtgcacgaggcgggcgaccc 737
Score = 200 bits (101), Expect = 4e-049
Identities = 260/308 (84%), Gaps = 20/308 (6%)
Strand = Plus / Plus
Query: 23 atagcacggttcttgataatcacattacaatacatatatatgtatataatacatcagact 82
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 195 atagcacggttcttgataatcacattacaatacat-----tatatataatacagcagact 249
Query: 83 tgagagcaca--cgacttccatgactggtcgacaaacactgatctatatgtagtttctgc 140
|||| ||| ||||||||||||||| |||||| |||||||||||||| ||| | ||||
Sbjct: 250 tgagcacacgatcgacttccatgactgatcgacagacactgatctatatataggtgctgc 309
Query: 141 gctgatactga--tgggtggtggcgatcaagacgcaaacatgtctaggggttaactccta 198
||||||| ||| | | ||||| |||| ||||||| |||||||||||||||||||||||
Sbjct: 310 gctgataatgacatagtaggtggtgatcgagacgcagacatgtctaggggttaactccta 369
Query: 199 acacgcagctttccaaaattggagccccggtgatggtgagactaag----acacactcac 254
||||||| ||||||||||||||||||||| |||| || ||||| |||| ||||
Sbjct: 370 acacgcacctttccaaaattggagccccgttgat---gactctaagggagacactgtcac 426
Query: 255 taccttgcaagaaaccaaaccctaggctaaggtggaggcac--gaacgaaccgacgatcg 312
||| ||||||||||| ||||||||||| ||| | |||||| |||||||||||||||||
Sbjct: 427 tactttgcaagaaacgaaaccctaggcaaag--gcaggcacgagaacgaaccgacgatcg 484
Query: 313 agaagaag 320
| ||||||
Sbjct: 485 acaagaag 492
>gb|CW294992.1|CW294992 104_776_11460695_116_35616_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460695, DNA
sequence
Length = 362
Score = 202 bits (102), Expect = 1e-049
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 1158 cgatgacgccacggacgaaggtctggacgcgcggcacgagcgcggcgcaccggcgggtga 1217
||||||| |||| |||| ||||||||| ||| |||||||| | ||||| | |||| |||
Sbjct: 362 cgatgacaccacagacggaggtctggatgcgtggcacgagaacagcgcagcagcggatga 303
Query: 1218 cgttgcttgggtcgtacaggtgggcgagccaggggaggtggtcggaccagttgaaggcgc 1277
|||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 302 tgttgctagggtcgtacaggtgggcgagccagg-----tggtccgaccaattgaaggcgc 248
Query: 1278 cgaggagctcgaacccctcgcgcaccatgctcttgagatgctcggcctccgcggcgccgg 1337
|||| |||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||
Sbjct: 247 cgag-agctcgaacccctcacgcaccacgctcttgagctgctcggcctcggcggcgccga 189
Query: 1338 cgcctgatgtgacgtcgtaccgcgtgccgaagacgctgcccatgatgttgttga 1391
|||| |||||||||||||| | |||||| ||||||||||||||| | |||||||
Sbjct: 188 cgccggatgtgacgtcgtatcacgtgccaaagacgctgcccatggtattgttga 135
>gb|CW212054.1|CW212054 104_643_11190824_148_37020_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190824, DNA
sequence
Length = 511
Score = 198 bits (100), Expect = 1e-048
Identities = 189/219 (86%), Gaps = 6/219 (2%)
Strand = Plus / Plus
Query: 1032 cccagaggatggcgaccatgtcgtcgtcgccgagcttctcgtcaccctcgagggagagga 1091
|||||||||||| ||| ||| ||||||| |||||||||||| || |||||||||||||
Sbjct: 293 cccagaggatggtgactatgctttcgtcgcggagcttctcgtccccgtcgagggagagga 352
Query: 1092 gcacgtcgacgaagtcagcattgtcgttgagg------gcggcggagttttggcggcggc 1145
|||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct: 353 gcacgtaaacgaagtcagcattgtctttgaggtcgagggcggccgagttttggcggcggc 412
Query: 1146 gccggtgctcgtcgatgacgccacggacgaaggtctggacgcgcggcacgagcgcggcgc 1205
||| ||||||||| |||||||||| ||| || ||||| |||||||| |||||||||||||
Sbjct: 413 gccagtgctcgtctatgacgccacagactaatgtctgtacgcgcgggacgagcgcggcgc 472
Query: 1206 accggcgggtgacgttgcttgggtcgtacaggtgggcga 1244
||||||||| ||||||||| ||||| |||| ||| ||||
Sbjct: 473 accggcgggagacgttgctggggtcatacatgtgtgcga 511
Score = 161 bits (81), Expect = 3e-037
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 945 tcgcctgcaccgccgggtggcgcaccagctccgccatgcaccactcggtcagaagcgccg 1004
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tcgcctgcaccgccgggtggcgcaccagctccgccatgcaccactccgtcagaagcgccg 60
Query: 1005 tcgtgtccgtaccgcggaagaccatctcc 1033
||||||||||||||||||||| |||||||
Sbjct: 61 tcgtgtccgtaccgcggaagatcatctcc 89
>gb|CW353557.1|CW353557 fsbb001f016f19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016f19, DNA
sequence
Length = 619
Score = 192 bits (97), Expect = 9e-047
Identities = 187/215 (86%), Gaps = 9/215 (4%)
Strand = Plus / Plus
Query: 23 atagcacggttcttgataatcacattacaatacatatatatgtatataatacatcagact 82
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 365 atagcacggttcttgataatcacattacaatacat-----tatatataatacagcagact 419
Query: 83 tgagagcaca--cgacttccatgactggtcgacaaacactgatctatatgtagtttctgc 140
|||| ||| ||||||||||||||| |||||| |||||||||||||| ||| | ||||
Sbjct: 420 tgagcacacgatcgacttccatgactgatcgacagacactgatctatatataggtgctgc 479
Query: 141 gctgatactga--tgggtggtggcgatcaagacgcaaacatgtctaggggttaactccta 198
||||||| ||| | | ||||| |||| ||||||| |||||||||||||||||||||||
Sbjct: 480 gctgataatgacatagtaggtggtgatcgagacgcagacatgtctaggggttaactccta 539
Query: 199 acacgcagctttccaaaattggagccccggtgatg 233
||||||| ||||||||||||||||||||| |||||
Sbjct: 540 acacgcacctttccaaaattggagccccgttgatg 574
>gb|CW212053.1|CW212053 104_643_11190824_116_37021_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190824, DNA
sequence
Length = 640
Score = 172 bits (87), Expect = 9e-041
Identities = 138/155 (89%)
Strand = Plus / Minus
Query: 1905 gcagagccaccgagacggtggccagaaagatcaggccagccaggagggccgggtgggcgc 1964
|||||||| ||| |||||||| ||| |||| |||||| | ||||||| ||||||||||||
Sbjct: 640 gcagagccgccgtgacggtggtcaggaagagcaggccggtcaggaggtccgggtgggcgc 581
Query: 1965 acagggtgtcggagccgagcagcgccgggagcgcgtacacccaccacgtgccgtccgtgc 2024
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 580 acagggtgtccgagccgagcagcgtcgggagcgcgtacacccaccacgtgctgtccgtgc 521
Query: 2025 atgagcaagccgcggaggccatcgccatggacgag 2059
| || || | ||||||||||||||||||| ||||
Sbjct: 520 acgacgaaactgcggaggccatcgccatgggcgag 486
>gb|CW354287.1|CW354287 fsbb001f017g23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f017g23, DNA
sequence
Length = 322
Score = 113 bits (57), Expect = 7e-023
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 1946 aggagggccgggtgggcgcacagggtgtcggagccgagcagcgccgggagcgcgtacacc 2005
|||||||| |||||||||||||||||||| || |||||||||| ||||||| |||||||
Sbjct: 322 aggagggctgggtgggcgcacagggtgtccgatccgagcagcgtggggagcgggtacacc 263
Query: 2006 caccacgtgccgtccgtgcatgagcaagccgcggaggccatcgccatgg 2054
| |||||||| |||||||| || |||| |||||||||||||||||||
Sbjct: 262 cgccacgtgctgtccgtgcccgacgaagctgcggaggccatcgccatgg 214
>gb|CW098443.1|CW098443 104_465_11003009_116_34372_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003009, DNA
sequence
Length = 647
Score = 107 bits (54), Expect = 4e-021
Identities = 108/125 (86%), Gaps = 7/125 (5%)
Strand = Plus / Minus
Query: 23 atagcacggttcttgataatcacattacaatacatatatatgtatataatacatcagact 82
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 120 atagcacggttcttgataatcacattacaatacat-----tatatataatacagcagact 66
Query: 83 tgagagcac--acgacttccatgactggtcgacaaacactgatctatatgtagtttctgc 140
|||| ||| ||||||||||||||| |||||| |||||||||||||| ||| | ||||
Sbjct: 65 tgagcacacgatcgacttccatgactgatcgacagacactgatctatatataggtgctgc 6
Query: 141 gctga 145
|||||
Sbjct: 5 gctga 1
>gb|CW061291.1|CW061291 104_305_10520323_115_30153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520323, DNA
sequence
Length = 444
Score = 99.6 bits (50), Expect = 1e-018
Identities = 95/109 (87%), Gaps = 7/109 (6%)
Strand = Plus / Plus
Query: 23 atagcacggttcttgataatcacattacaatacatatatatgtatataatacatcagact 82
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 339 atagcacggttcttgataatcacattacaatacat-----tatatataatacagcagact 393
Query: 83 tgagagcac--acgacttccatgactggtcgacaaacactgatctatat 129
|||| ||| ||||||||||||||| |||||| ||||||||||||||
Sbjct: 394 tgagcacacgatcgacttccatgactgatcgacagacactgatctatat 442
>gb|CW126872.1|CW126872 104_507_11113128_148_34729_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113128, DNA
sequence
Length = 604
Score = 91.7 bits (46), Expect = 2e-016
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 556 ggtggtgaggcccaggttcttgccggggcagacgcgacgcccggcgccgaacggggccag 615
||||| |||| |||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 342 ggtggcgagggccagcatcttgccggggcagacgcggcgtccggcgccgaacggggccag 283
Query: 616 gcggaggtcg 625
||||||||||
Sbjct: 282 gcggaggtcg 273
Score = 46.1 bits (23), Expect = 0.013
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 722 atggcccacatattcaccatcgccgtggtgccagccgggacca 764
|||| |||||| |||||||| ||||||||||| || |||||||
Sbjct: 188 atggaccacatgttcaccatggccgtggtgccggcggggacca 146
>gb|CF429688.1|CF429688 PH1_23_C06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_23_C06_A002 5', mRNA sequence
Length = 400
Score = 77.8 bits (39), Expect = 4e-012
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 1516 cggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgttggg 1575
||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| |||
Sbjct: 216 cggggagaagaggtgcgtggacgccacgcggcggagcgcgcgccagtaggcgccgtaggg 157
Query: 1576 cgcgaacccgatggc 1590
|||||| ||||||||
Sbjct: 156 cgcgaagccgatggc 142
>gb|CF430161.1|CF430161 PH1_26_D12.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_26_D12_A002 5', mRNA sequence
Length = 733
Score = 77.8 bits (39), Expect = 4e-012
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 1516 cggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgttggg 1575
||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| |||
Sbjct: 645 cggggagaagaggtgcgtggacgccacgcggcggagcgcgcgccagtaggcgccgtaggg 586
Query: 1576 cgcgaacccgatggc 1590
|||||| ||||||||
Sbjct: 585 cgcgaagccgatggc 571
>gb|CW459041.1|CW459041 fsbb001f205j14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205j14, DNA
sequence
Length = 582
Score = 73.8 bits (37), Expect = 6e-011
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1924 ggccagaaagatcaggccagccaggagggccgggtgggcgcacagggtgtcggagccgag 1983
|||||| |||| |||||||||| ||||||| |||||||||||||||| || || |||
Sbjct: 242 ggccaggaagaataggccagccaagagggccaggtgggcgcacagggtatc--cgctgag 299
Query: 1984 cagcgccgggagcgcgtacaccca 2007
||||||||||||| ||||||||||
Sbjct: 300 cagcgccgggagcacgtacaccca 323
>gb|CW469723.1|CW469723 fsbb001f222j05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f222j05, DNA
sequence
Length = 600
Score = 73.8 bits (37), Expect = 6e-011
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1924 ggccagaaagatcaggccagccaggagggccgggtgggcgcacagggtgtcggagccgag 1983
|||||| |||| |||||||||| ||||||| |||||||||||||||| || || |||
Sbjct: 244 ggccaggaagaataggccagccaagagggccaggtgggcgcacagggtatc--cgctgag 301
Query: 1984 cagcgccgggagcgcgtacaccca 2007
||||||||||||| ||||||||||
Sbjct: 302 cagcgccgggagcacgtacaccca 325
>gb|CW469725.1|CW469725 fsbb001f222j06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f222j06, DNA
sequence
Length = 654
Score = 73.8 bits (37), Expect = 6e-011
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1924 ggccagaaagatcaggccagccaggagggccgggtgggcgcacagggtgtcggagccgag 1983
|||||| |||| |||||||||| ||||||| |||||||||||||||| || || |||
Sbjct: 259 ggccaggaagaataggccagccaagagggccaggtgggcgcacagggtatc--cgctgag 316
Query: 1984 cagcgccgggagcgcgtacaccca 2007
||||||||||||| ||||||||||
Sbjct: 317 cagcgccgggagcacgtacaccca 340
>gb|CW314421.1|CW314421 104_805_11471821_116_35877_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471821, DNA
sequence
Length = 512
Score = 69.9 bits (35), Expect = 9e-010
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1516 cggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgttggg 1575
||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| ||
Sbjct: 203 cggggagaagaggtgcgtggacgccacgcggcggagcgcgcgccagtaggcgccgtaagg 262
Query: 1576 cgcgaacccgatggc 1590
|||||| ||||||||
Sbjct: 263 cgcgaagccgatggc 277
>gb|CL152904.1|CL152904 104_336_10780327_114_31365_343 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780327, DNA
sequence
Length = 542
Score = 65.9 bits (33), Expect = 1e-008
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 796 ggcgaggcgagcccagctcagcagcgggccaggcgggtgggcgcgcagcgtctccttcac 855
||||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 233 ggcgaggcgcgcccacgacagcagcgggcccggcgggtgcacgcggagcgtctccttcac 174
Query: 856 aaccgcctgcaggtacggcatgcgcgccacgtcggcgtcgg 896
|| ||||||||| |||| || | ||||||||||||||
Sbjct: 173 gacgcgctgcaggtagggcagccgggacacgtcggcgtcgg 133
Score = 63.9 bits (32), Expect = 6e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtc 624
||||||||||||| ||||| ||||||||||||||||| || || ||||||||
Sbjct: 441 tcttgccggggcacacgcgccgcccggcgccgaacggcgcgagccggaggtc 390
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 722 atggcccacatattcaccatcgccgtggtgccagccgggac 762
||||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 304 atggcccacatgttgaccatggccgtggtgcccgccgggac 264
>gb|CL157508.1|CL157508 104_345_10783630_114_31477_190 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783630, DNA
sequence
Length = 673
Score = 65.9 bits (33), Expect = 1e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 796 ggcgaggcgagcccagctcagcagcgggccaggcgggtgggcgcgcagcgtctccttcac 855
||||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 318 ggcgaggcgcgcccacgacagcagcgggcccggcgggtgcacgcggagcgtctccttcac 377
Query: 856 aaccgcctgcaggtacggcatgcgcgccacgtcggcgtcgg 896
|| ||||||||| |||| || | ||||||||||||||
Sbjct: 378 gacgcgctgcaggtagggcagccgggacacgtcggcgtcgg 418
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtc 624
|||||||||| || ||||| ||||||||||||||||| || || ||||||||
Sbjct: 110 tcttgccgggccacacgcgccgcccggcgccgaacggcgcgagccggaggtc 161
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 722 atggcccacatattcaccatcgccgtggtgccagccgggac 762
||||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 247 atggcccacatgttgaccatggccgtggtgcccgccgggac 287
>gb|CW028142.1|CW028142 104_255_10498916_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498916, DNA
sequence
Length = 872
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtcgacgccgc 632
||||| ||||||| ||||| || ||||| ||||| |||||||||||||||||| |||||
Sbjct: 459 tcttgtcggggcatacgcggcggccggcaccgaagggggccaggcggaggtcgccgccga 518
Query: 633 ggacg 637
|||||
Sbjct: 519 ggacg 523
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 725 gcccacatattcaccatcgccgtggtgccagccgggacca 764
|||||||| |||||||| ||||||||||| || |||||||
Sbjct: 605 gcccacatgttcaccatggccgtggtgccggcggggacca 644
>gb|CW121588.1|CW121588 104_499_11109987_148_34657_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109987, DNA
sequence
Length = 393
Score = 65.9 bits (33), Expect = 1e-008
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 796 ggcgaggcgagcccagctcagcagcgggccaggcgggtgggcgcgcagcgtctccttcac 855
||||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 368 ggcgaggcgcgcccacgacagcagcgggcccggcgggtgcacgcggagcgtctccttcac 309
Query: 856 aaccgcctgcaggtacggcatgcgcgccacgtcggcgtcgg 896
|| ||||||||| |||| || | ||||||||||||||
Sbjct: 308 gacgcgctgcaggtagggcagccgggacacgtcggcgtcgg 268
>gb|CW278490.1|CW278490 104_752_11406575_148_35682_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406575, DNA
sequence
Length = 569
Score = 65.9 bits (33), Expect = 1e-008
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 796 ggcgaggcgagcccagctcagcagcgggccaggcgggtgggcgcgcagcgtctccttcac 855
||||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 299 ggcgaggcgcgcccacgacagcagcgggcccggcgggtgcacgcggagcgtctccttcac 240
Query: 856 aaccgcctgcaggtacggcatgcgcgccacgtcggcgtcgg 896
|| ||||||||| |||| || | ||||||||||||||
Sbjct: 239 gacgcgctgcaggtagggcagccgggacacgtcggcgtcgg 199
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtc 624
||||||||||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 507 tcttgccggggcacacgcgccgcccggcgccgaatggcgcgagccggaggtc 456
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 722 atggcccacatattcaccatcgccgtggtgccagccgggac 762
||||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 370 atggcccacatgttgaccatggccgtggtgcccgccgggac 330
>gb|CW304081.1|CW304081 104_788_11465588_148_35696_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465588, DNA
sequence
Length = 657
Score = 65.9 bits (33), Expect = 1e-008
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 796 ggcgaggcgagcccagctcagcagcgggccaggcgggtgggcgcgcagcgtctccttcac 855
||||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 337 ggcgaggcgcgcccacgacagcagcgggcccggcgggtgcacgcggagcgtctccttcac 278
Query: 856 aaccgcctgcaggtacggcatgcgcgccacgtcggcgtcgg 896
|| ||||||||| |||| || | ||||||||||||||
Sbjct: 277 gacgcgctgcaggtagggcagccgggacacgtcggcgtcgg 237
Score = 63.9 bits (32), Expect = 6e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtc 624
||||||||||||| ||||| ||||||||||||||||| || || ||||||||
Sbjct: 545 tcttgccggggcacacgcgccgcccggcgccgaacggcgcgagccggaggtc 494
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 722 atggcccacatattcaccatcgccgtggtgccagccgggac 762
||||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 408 atggcccacatgttgaccatggccgtggtgcccgccgggac 368
>gb|CW479297.1|CW479297 fsbb001f237l02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237l02, DNA
sequence
Length = 604
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtcgacgccgc 632
||||| ||||||| ||||| || ||||| ||||| |||||||||||||||||| |||||
Sbjct: 499 tcttgtcggggcatacgcggcggccggcaccgaagggggccaggcggaggtcgccgccga 558
Query: 633 ggacg 637
|||||
Sbjct: 559 ggacg 563
>gb|CD204012.1|CD204012 HS1_3_B02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_B02_A012 3', mRNA sequence
Length = 572
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 700 ccacacggcggcatcgtgggttatggcccacatattcaccatcgccgtggtgccagccgg 759
||||||| ||| |||||||||||||||||||| |||||||| || |||||||| || ||
Sbjct: 131 ccacacgctggcgtcgtgggttatggcccacatgttcaccatggcggtggtgcccgcggg 72
Query: 760 gacca 764
|||||
Sbjct: 71 gacca 67
>gb|CD208098.1|CD208098 HS1_31_F10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_31_F10_A012 3', mRNA sequence
Length = 609
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 700 ccacacggcggcatcgtgggttatggcccacatattcaccatcgccgtggtgccagccgg 759
||||||| ||| |||||||||||||||||||| |||||||| || |||||||| || ||
Sbjct: 170 ccacacgctggcgtcgtgggttatggcccacatgttcaccatggcggtggtgcccgcggg 111
Query: 760 gacca 764
|||||
Sbjct: 110 gacca 106
>gb|CD209555.1|CD209555 HS1_43_E02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_43_E02_A012 3', mRNA sequence
Length = 507
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 700 ccacacggcggcatcgtgggttatggcccacatattcaccatcgccgtggtgccagccgg 759
||||||| ||| |||||||||||||||||||| |||||||| || |||||||| || ||
Sbjct: 74 ccacacgctggcgtcgtgggttatggcccacatgttcaccatggcggtggtgcccgcggg 15
Query: 760 gacca 764
|||||
Sbjct: 14 gacca 10
>gb|CD213028.1|CD213028 HS1_28_D05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_28_D05_A012 3', mRNA sequence
Length = 701
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 700 ccacacggcggcatcgtgggttatggcccacatattcaccatcgccgtggtgccagccgg 759
||||||| ||| |||||||||||||||||||| |||||||| || |||||||| || ||
Sbjct: 258 ccacacgctggcgtcgtgggttatggcccacatgttcaccatggcggtggtgcccgcggg 199
Query: 760 gacca 764
|||||
Sbjct: 198 gacca 194
>gb|CW304080.1|CW304080 104_788_11465588_116_35692_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465588, DNA
sequence
Length = 640
Score = 63.9 bits (32), Expect = 6e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtc 624
||||||||||||| ||||| ||||||||||||||||| || || ||||||||
Sbjct: 498 tcttgccggggcacacgcgccgcccggcgccgaacggcgcgagccggaggtc 549
>gb|CW465569.1|CW465569 fsbb001f216g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216g11, DNA
sequence
Length = 543
Score = 63.9 bits (32), Expect = 6e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtc 624
||||||||||||| ||||| ||||||||||||||||| || || ||||||||
Sbjct: 301 tcttgccggggcacacgcgccgcccggcgccgaacggcgcgagccggaggtc 250
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 796 ggcgaggcgagcccagctcagcagcgggccaggcgggtgggcgcgcagcgtctccttcac 855
||||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 93 ggcgaggcgcgcccacgacagcagcgggcccggcgggtgcacgcggagcgtctccttcac 34
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 722 atggcccacatattcaccatcgccgtggtgccagccgggac 762
||||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 164 atggcccacatgttgaccatggccgtggtgcccgccgggac 124
>gb|BE360873.1|BE360873 DG1_67_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 638
Score = 63.9 bits (32), Expect = 6e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 573 tcttgccggggcagacgcgacgcccggcgccgaacggggccaggcggaggtc 624
||||||||||||| ||||| ||||||||||||||||| || || ||||||||
Sbjct: 250 tcttgccggggcacacgcgccgcccggcgccgaacggcgcgagccggaggtc 199
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 722 atggcccacatattcaccatcgccgtggtgccagccgggac 762
||||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 113 atggcccacatgttgaccatggccgtggtgcccgccgggac 73
>gb|CL168081.1|CL168081 104_365_10810549_116_31805_229 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810549, DNA
sequence
Length = 731
Score = 61.9 bits (31), Expect = 2e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 1512 ggcgcggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgt 1571
||||||| ||||| ||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct: 503 ggcgcggcgagaagaggtgcgcggacgcgacgcggcggagcgcgcgccagtaggcgccgt 562
Query: 1572 tgggcgcgaacccgatggc 1590
|| ||||| ||||||||
Sbjct: 563 gcggggcgaagccgatggc 581
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1239 gggcgagccaggggaggtggtcggaccagttga 1271
|||||||||| ||||||||||||||||||||||
Sbjct: 230 gggcgagccacgggaggtggtcggaccagttga 262
>gb|CW058730.1|CW058730 104_301_10518902_114_30158 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518902, DNA
sequence
Length = 467
Score = 61.9 bits (31), Expect = 2e-007
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1241 gcgagccaggggaggtggtcggaccagttga 1271
|||||||||||||||||||||||||||||||
Sbjct: 299 gcgagccaggggaggtggtcggaccagttga 329
>gb|CW072292.1|CW072292 104_325_10592185_116_30541 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592185, DNA
sequence
Length = 334
Score = 61.9 bits (31), Expect = 2e-007
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1241 gcgagccaggggaggtggtcggaccagttga 1271
|||||||||||||||||||||||||||||||
Sbjct: 170 gcgagccaggggaggtggtcggaccagttga 200
>gb|CW210728.1|CW210728 104_641_11189943_116_37005_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189943, DNA
sequence
Length = 547
Score = 61.9 bits (31), Expect = 2e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 1512 ggcgcggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgt 1571
||||||| ||||| ||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct: 154 ggcgcggcgagaagaggtgcgcggacgcgacgcggcggagcgcgcgccagtaggcgccgt 213
Query: 1572 tgggcgcgaacccgatggc 1590
|| ||||| ||||||||
Sbjct: 214 gcggggcgaagccgatggc 232
>gb|CW493939.1|CW493939 fsbb001f284p06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284p06, DNA
sequence
Length = 424
Score = 61.9 bits (31), Expect = 2e-007
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1241 gcgagccaggggaggtggtcggaccagttga 1271
|||||||||||||||||||||||||||||||
Sbjct: 238 gcgagccaggggaggtggtcggaccagttga 268
>gb|CW372798.1|CW372798 fsbb001f048n20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f048n20, DNA
sequence
Length = 296
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 700 ccacacggcggcatcgtgggttatggcccacatattcaccatcgccgtggtgccagccgg 759
||||||| ||| |||||||||||||||||||| |||||||| | |||||||| || ||
Sbjct: 31 ccacacgctggcgtcgtgggttatggcccacatgttcaccatggtggtggtgcccgcggg 90
Query: 760 gacca 764
|||||
Sbjct: 91 gacca 95
>gb|CD231774.1|CD231774 SS1_23_D03.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_23_D03_A012 5', mRNA sequence
Length = 717
Score = 56.0 bits (28), Expect = 1e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 1512 ggcgcggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgt 1571
||||||| ||||| ||||||| |||||||||||| ||||| ||||||||| ||||||
Sbjct: 676 ggcgcggcgagaagaggtgcgcggacgcgacgcgncggagcgcgcgccagtaggcgccgt 617
Query: 1572 tgggcgcgaacccgatggc 1590
|| ||||| ||||||||
Sbjct: 616 gcggggcgaagccgatggc 598
>gb|BZ331488.1|BZ331488 hw08h04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw08h04 5', DNA sequence
Length = 496
Score = 54.0 bits (27), Expect = 5e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 847 ctccttcacaaccgcctgcaggtacggcatgcgcgccacgtcg 889
||||||||| || |||||||||||||||| || ||||||||||
Sbjct: 201 ctccttcacgacggcctgcaggtacggcaggctcgccacgtcg 243
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 800,018
Number of Sequences: 832831
Number of extensions: 800018
Number of successful extensions: 249639
Number of sequences better than 0.5: 142
Number of HSP's better than 0.5 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 249069
Number of HSP's gapped (non-prelim): 540
length of query: 2104
length of database: 491,359,669
effective HSP length: 20
effective length of query: 2084
effective length of database: 474,703,049
effective search space: 989281154116
effective search space used: 989281154116
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)