BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521569.2.1
(887 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Me... 688 0.0
gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Me... 543 e-153
gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2... 468 e-130
gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorgh... 250 2e-064
gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Me... 222 4e-056
gb|BZ349363.1|BZ349363 hq90g06.g1 WGS-SbicolorF (JM107 adap... 220 2e-055
gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Me... 107 2e-021
gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Me... 107 2e-021
gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated ... 100 4e-019
gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stres... 100 4e-019
gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Me... 86 6e-015
gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1... 62 9e-008
gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 ... 62 9e-008
gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots ... 62 9e-008
gb|CL185192.1|CL185192 104_399_10899358_114_32393_095 Sorgh... 46 0.006
gb|CL152854.1|CL152854 104_336_10780290_114_31365_306 Sorgh... 40 0.34
gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedl... 40 0.34
gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stresse... 40 0.34
>gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 567
Score = 688 bits (347), Expect = 0.0
Identities = 419/443 (94%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 ggttctcacacgaaggaccagttcacgaacatgaaggcgaggcagtgcggggtgtcgtcg 384
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 383 tcgctcaggaccttccacgccaccgcctgctcgtaggacaccggccgccccatactcgat 324
Query: 319 acacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtg 378
||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 323 acacacacgccgccgggaaggtacgcgaagccctgctgcataatcttaggatactcggtg 264
Query: 379 cagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagca 438
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 263 cagagcgccttcctgccatcatcatcaaggatcttctcaagggagatgtcctggagagcg 204
Query: 439 atcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagca 498
|||| |||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||
Sbjct: 203 atcaacgtcgtctccagcatgtcgaggccggattggttggcgaaggtgaacacaggagca 144
Query: 499 gccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagca 558
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 143 gccttcagggaacagcacatgatcgagtccgagtgttgccacagtgctttcaaggaagca 84
Query: 559 tccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctg 618
|| |||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct: 83 tcagtgcattgggtgtctgtgcgaaggagctcggctcctgtgtgaaacctgtagctcctg 24
Query: 619 ccgatccaccttgccagcgtgtg 641
|||||||||||||| ||||||||
Sbjct: 23 ccgatccaccttgcaagcgtgtg 1
>gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 543 bits (274), Expect = e-153
Identities = 316/330 (95%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 330 ggttctcacacgaaggaccagttcacgaacatgaaggcgaggcagtgcggggtgtcgtcg 271
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 270 tcgctcaggaccttccacgccaccgcctgctcgtaggacaccggccgccccatactcgat 211
Query: 319 acacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtg 378
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 210 acacacacgccgccggggaggtacgcgaagccctgctgcataatcttaggatactcggtg 151
Query: 379 cagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagca 438
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 150 cagagcgccttcctgccatcatcatcaaggatcttctcaagggagatgtcctggagagcg 91
Query: 439 atcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagca 498
|||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 90 atcaacgtcgtctccagcatgtcgaggccggcttggttggcgaaggtgaacacaggagca 31
Query: 499 gccttcagggaacagcacatgatcgagtcc 528
||||||||||||||||||||||||||||||
Sbjct: 30 gccttcagggaacagcacatgatcgagtcc 1
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 43 tacaaagctgtttgttccacggg 65
|||||||||||||||||||||||
Sbjct: 483 tacaaagctgtttgttccacggg 461
>gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 369
Score = 468 bits (236), Expect = e-130
Identities = 275/288 (95%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 288 ggttctcacacgaaggaccagttcacgaacatgaaggcgaggcagtgcggggtgtcgtcg 229
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 228 tcgctcaggaccttccacgccaccgcctgctcgtaggacaccggccgccccatactcgat 169
Query: 319 acacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtg 378
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 168 acacacacgccgccggggaggtacgcgaagccctgctgcataatcttaggatactcggtg 109
Query: 379 cagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagca 438
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 108 cagagcgccttcctgccatcatcatcaaggatcttctcaagggagatgtcctggagagcg 49
Query: 439 atcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtg 486
|||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 48 atcaacgtcgtctccagcatgtcgaggccggcttggttggcgaaggtg 1
>gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899358, DNA
sequence
Length = 355
Score = 250 bits (126), Expect = 2e-064
Identities = 147/154 (95%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 222 ggttctcacacgaaggaccagttcacgaacatgaaggcgaggcagtgcggggtgtcgtcg 163
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 162 tcgctcaggaccttccacgccaccgcctgctcgtaggacaccggccgacccatactcgat 103
Query: 319 acacacacgccaccggggaggtacgcgaagccct 352
||||||||||| ||||||||||| ||||||||||
Sbjct: 102 acacacacgccgccggggaggtatgcgaagccct 69
>gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 367
Score = 222 bits (112), Expect = 4e-056
Identities = 133/140 (95%)
Strand = Plus / Minus
Query: 214 gaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgctcaggaccttc 273
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaccatttcacgaacatgaatgcgaggcagtgcggggtgtcgtcgtcgctcaggaccttc 308
Query: 274 cacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacgccaccg 333
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 307 cacgccaccgcctgctcgtaggacaccggccgccccatactcgatacacacacgccgccg 248
Query: 334 gggaggtacgcgaagccctg 353
||||||||||||||||||||
Sbjct: 247 gggaggtacgcgaagccctg 228
Score = 194 bits (98), Expect = 1e-047
Identities = 122/130 (93%)
Strand = Plus / Minus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| |||||||||||| | ||||||||||||||||||||||||||||| || |||||||
Sbjct: 133 cctgctgcataatcttaagatactcggtgcagagcgccttcctgccatcatcatcaagga 74
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||
Sbjct: 73 tcttctcaagggagatgtcctggagagcgatcaacgtcgtctccagcatgtcgaggccgg 14
Query: 470 cttggttggc 479
||||||||||
Sbjct: 13 cttggttggc 4
>gb|BZ349363.1|BZ349363 hq90g06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hq90g06 5', DNA sequence
Length = 488
Score = 220 bits (111), Expect = 2e-055
Identities = 141/151 (93%)
Strand = Plus / Minus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 360 cctgctgcataatcttagggtactcggtgcagagcgccttcctgccatcatcatcaagga 301
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
||||||||||||||||||| |||||||| || | |||||||||||||||||| |||||||
Sbjct: 300 tcttctcaagggagatgtcgtggagagcgatgaacgtcgtctccagcatgtcgaggccgg 241
Query: 470 cttggttggcaaaggtgaacacgggagcagc 500
|||||||||| ||||||||||| ||||||||
Sbjct: 240 cttggttggcgaaggtgaacacaggagcagc 210
Score = 145 bits (73), Expect = 8e-033
Identities = 91/97 (93%)
Strand = Plus / Minus
Query: 500 ccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcat 559
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 123 ccttcagggaacagcacatgatcgagtcagagtgttgccacagtgctttcaaggaagcat 64
Query: 560 ccgtgcattgggtgtccgtgcggaggagttcggctcc 596
| |||||||||||||| ||||| ||||| ||||||||
Sbjct: 63 cagtgcattgggtgtctgtgcgaaggagctcggctcc 27
Score = 56.0 bits (28), Expect = 6e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 313 ctcgacacacacacgccaccggggaggtacgcgaagccct 352
||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 485 ctcgatacacacacgccgccggggaggtatgcgaagccct 446
>gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 423
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
|||||||||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct: 138 accttccacgccaccgcctgctcgtacgacgcctgccgccccatgctcgatctgcacacg 79
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatctt 365
|| |||||||||||||| | |||||| ||||| |||||
Sbjct: 78 ccgccggggaggtacgccaggccctgctgcatgatctt 41
>gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 490
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
|||||||||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct: 309 accttccacgccaccgcctgctcgtacgacgcctgccgccccatgctcgatctgcacacg 250
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatctt 365
|| |||||||||||||| | |||||| ||||| |||||
Sbjct: 249 ccgccggggaggtacgccaggccctgctgcatgatctt 212
>gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_A10_A002 3', mRNA sequence
Length = 560
Score = 99.6 bits (50), Expect = 4e-019
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct: 237 accttccacgccaccgcctgctcgtacgatgcctgccgccccatgctcgatctgcacacg 178
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatctt 365
|| |||||||||||||| | |||||| ||||| |||||
Sbjct: 177 ccgccggggaggtacgccaggccctgctgcatgatctt 140
>gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_B02_A002 3', mRNA sequence
Length = 694
Score = 99.6 bits (50), Expect = 4e-019
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct: 406 accttccacgccaccgcctgctcgtacgatgcctgccgccccatgctcgatctgcacacg 347
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatctt 365
|| |||||||||||||| | |||||| ||||| |||||
Sbjct: 346 ccgccggggaggtacgccaggccctgctgcatgatctt 309
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 606 cctgtagctcctgccgatccac 627
||||||||||||||||||||||
Sbjct: 68 cctgtagctcctgccgatccac 47
>gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 474
Score = 85.7 bits (43), Expect = 6e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 279 caccgcctgctcgtacgacaccggccgccccatgctcgacacacacacgccaccggggag 338
||||||||||||||||||| || |||||||||||||||| |||||||| ||||||||
Sbjct: 474 caccgcctgctcgtacgacgcctgccgccccatgctcgatctgcacacgccgccggggag 415
Query: 339 gtacgcgaagccctgttgcataatctt 365
|||||| | |||||| ||||| |||||
Sbjct: 414 gtacgccaggccctgctgcatgatctt 388
Score = 56.0 bits (28), Expect = 6e-006
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 606 cctgtagctcctgccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttg 665
|||||||||||||||||||||| | || || | ||||||||||||| ||||| | ||
Sbjct: 147 cctgtagctcctgccgatccacgtagctagagcaagtgcctcaggagagcctggtggatg 88
Query: 666 cttcatttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcac 725
||||| ||| | || |||| ||| |||||||| ||||||||||| |||||||||||
Sbjct: 87 cttcagttcgatatgcgggccaaggcgagaaggagcaattgccatggccaccctctgcac 28
>gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 61.9 bits (31), Expect = 9e-008
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgcccca 310
||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 418 accttccacgccagcgccttctcgtacgacaccggccggccca 376
Score = 56.0 bits (28), Expect = 6e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 412 ttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggcc 467
||||| |||| |||||||||||| || | ||| || ||||||||||||||||||||
Sbjct: 274 ttctccagggtgatgtcctggagcgccaccagggttgtctccagcatgtccaggcc 219
>gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 666
Score = 61.9 bits (31), Expect = 9e-008
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgcccca 310
||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 319 accttccacgccagcgccttctcgtacgacaccggccggccca 277
Score = 56.0 bits (28), Expect = 6e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 412 ttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggcc 467
||||| |||| |||||||||||| || | ||| || ||||||||||||||||||||
Sbjct: 175 ttctccagggtgatgtcctggagcgccaccagggttgtctccagcatgtccaggcc 120
>gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A02_A002 3', mRNA sequence
Length = 833
Score = 61.9 bits (31), Expect = 9e-008
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgcccca 310
||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 622 accttccacgccagcgccttctcgtacgacaccggccggccca 580
Score = 56.0 bits (28), Expect = 6e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 412 ttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggcc 467
||||| |||| |||||||||||| || | ||| || ||||||||||||||||||||
Sbjct: 478 ttctccagggtgatgtcctggagcgccaccagggttgtctccagcatgtccaggcc 423
>gb|CL185192.1|CL185192 104_399_10899358_114_32393_095 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899358, DNA
sequence
Length = 530
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 tacaaagctgtttgttccacggg 65
|||||||||||||||||||||||
Sbjct: 485 tacaaagctgtttgttccacggg 507
>gb|CL152854.1|CL152854 104_336_10780290_114_31365_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780290, DNA
sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 247 tcacacgaaggaccagttgacgaa 224
>gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 3', mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 444 tcacacgaaggaccagttgacgaa 421
>gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_77_A06_A011 5', mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 346 tcacacgaaggaccagttgacgaa 323
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199,946
Number of Sequences: 832831
Number of extensions: 199946
Number of successful extensions: 54210
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54158
Number of HSP's gapped (non-prelim): 47
length of query: 887
length of database: 491,359,669
effective HSP length: 20
effective length of query: 867
effective length of database: 474,703,049
effective search space: 411567543483
effective search space used: 411567543483
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)