BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521462.2.2
(1311 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN139065.1|CN139065 OX1_15_F09.g1_A002 Oxidatively-stres... 1015 0.0
gb|BG159222.1|BG159222 RHIZ2_27_H08.b1_A003 Rhizome2 (RHIZ2... 856 0.0
gb|CF480847.1|CF480847 POL1_68_G02.b1_A002 Pollen Sorghum b... 747 0.0
gb|BG159117.1|BG159117 RHIZ2_28_B02.b1_A003 Rhizome2 (RHIZ2... 676 0.0
gb|CF480911.1|CF480911 POL1_68_G02.g1_A002 Pollen Sorghum b... 549 e-154
gb|CN138974.1|CN138974 OX1_15_F09.b1_A002 Oxidatively-stres... 541 e-152
gb|BG052663.1|BG052663 RHIZ2_27_H08.g1_A003 Rhizome2 (RHIZ2... 379 e-103
gb|BG052677.1|BG052677 RHIZ2_28_B02.g1_A003 Rhizome2 (RHIZ2... 297 1e-078
gb|BZ339082.1|BZ339082 ic29f12.g1 WGS-SbicolorF (JM107 adap... 276 5e-072
gb|CL185139.1|CL185139 104_399_10899321_116_32394_047 Sorgh... 276 5e-072
gb|CW209191.1|CW209191 104_639_11189100_116_36988_046 Sorgh... 276 5e-072
gb|CW209192.1|CW209192 104_639_11189100_148_36987_046 Sorgh... 276 5e-072
gb|CN125521.1|CN125521 RHOH1_11_C10.g1_A002 Acid- and alkal... 198 9e-049
gb|CL187978.1|CL187978 104_404_10901272_114_32445_064 Sorgh... 141 2e-031
gb|CL187979.1|CL187979 104_404_10901272_116_32449_064 Sorgh... 139 7e-031
gb|BG051126.1|BG051126 FM1_56_F02.b1_A003 Floral-Induced Me... 139 7e-031
gb|AW286827.2|AW286827 LG1_222_A02.b1_A002 Light Grown 1 (L... 127 3e-027
gb|AW671986.1|AW671986 LG1_353_B10.b1_A002 Light Grown 1 (L... 127 3e-027
gb|CF760790.1|CF760790 DSAF1_66_F10.b1_A011 Drought-stresse... 127 3e-027
gb|BG104074.1|BG104074 RHIZ2_40_B12.b1_A003 Rhizome2 (RHIZ2... 119 7e-025
gb|CN126390.1|CN126390 RHOH1_16_G12.g1_A002 Acid- and alkal... 109 7e-022
gb|CN151685.1|CN151685 WOUND1_77_A02.b1_A002 Wounded leaves... 105 1e-020
gb|CD213655.1|CD213655 HS1_52_H08.b1_A012 Heat-shocked seed... 101 2e-019
gb|BG051449.1|BG051449 FM1_56_F02.g1_A003 Floral-Induced Me... 86 1e-014
gb|AW283663.1|AW283663 LG1_222_A03.g1_A002 Light Grown 1 (L... 78 2e-012
gb|AW747488.1|AW747488 WS1_68_D08.g1_A002 Water-stressed 1 ... 78 2e-012
gb|BE593318.1|BE593318 WS1_100_C08.g1_A002 Water-stressed 1... 78 2e-012
gb|CF758320.1|CF758320 DSAF1_30_C09.g1_A011 Drought-stresse... 78 2e-012
gb|CN126300.1|CN126300 RHOH1_16_G12.b1_A002 Acid- and alkal... 78 2e-012
gb|CW133689.1|CW133689 104_517_11116897_116_34808_005 Sorgh... 76 9e-012
gb|BE356603.1|BE356603 DG1_126_A12.g1_A002 Dark Grown 1 (DG... 62 1e-007
gb|BG103736.1|BG103736 RHIZ2_40_B12.g1_A003 Rhizome2 (RHIZ2... 62 1e-007
>gb|CN139065.1|CN139065 OX1_15_F09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_F09_A002 5', mRNA sequence
Length = 766
Score = 1015 bits (512), Expect = 0.0
Identities = 702/764 (91%), Gaps = 16/764 (2%)
Strand = Plus / Plus
Query: 5 gcgtactgctcccttcttcctcgttgctccgcccccttttgtcgtcgcgtcctcctctcg 64
||||||| ||||||||||||||| || |||||||||| ||||||||||| |||| | |
Sbjct: 9 gcgtactcctcccttcttcctcgccgccccgccccctt--gtcgtcgcgtcgtcctgttg 66
Query: 65 aggcctcggcagtcggcacgaggacgcgcgatcccgtcaccgctcacctccttctccaaa 124
||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||
Sbjct: 67 aggcctcggca-------cgagggcacgcgatcccgtcaccgctcgcctccttctccaaa 119
Query: 125 cactgactccgcttcccgtccccatcccgctg------cgcaagatcgggagggg-acga 177
|||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 120 cactagctccgcttcccgttcccatcccgctgtaacgccgcaagatcgggagggggacga 179
Query: 178 agagaggtcgaccgggaggagatgcaccgagaccgaggcgtctctgcggcagcgataccc 237
||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| | |||
Sbjct: 180 ggagaggtcggccgggaggagatgcaccgagaccgaggcgtctcggcggcggcggtcccc 239
Query: 238 ggtgaccggaagcggatcggcgagcctatggacagatcgtctccatctacgtcgtggggg 297
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct: 240 ggtgaccggaagcggatcggcgagccgatggacagatcgtctccgtccacgtcatggggg 299
Query: 298 ttctccggagggcgcgagaaggagcggatcggcgtgggcaagcagccggagatgcctcgc 357
|| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 300 ttttccggaggccgcgagaaggagcggatcggcgggggcaagcagccggagatgtctcgc 359
Query: 358 tccggcggcggatccaccgccatgtccaagagcaagctctctgacgcagaatcagaaact 417
||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct: 360 tccggcggcggatccaccgccatctccaagagcatgctctttgacgcagaatcagaaacc 419
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 479
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
|||||||| |||| ||| ||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 480 ttctgtagtttaaggggtaatgagtttttctgtgaggttgatgacgagtacatacaagat 539
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 540 gatttcaacctgtgtgggctaagcaaccaagttccatattacgactatgcgcttgatctg 599
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttatt 657
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 600 atattagatgttgaatcttcccatggtgatatgttcacagaagagcaaaatgaactcatt 659
Query: 658 gaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaa 719
Query: 718 gggctgtccgcaatgctggataagtacaggaacgttgagttcgg 761
||| |||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 720 gggttgtcggcaatgctggataagtacaagaacgttgatttcgg 763
>gb|BG159222.1|BG159222 RHIZ2_27_H08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 544
Score = 856 bits (432), Expect = 0.0
Identities = 510/536 (95%)
Strand = Plus / Plus
Query: 311 gcgagaaggagcggatcggcgtgggcaagcagccggagatgcctcgctccggcggcggat 370
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 9 gcgagaaggagcggatcggcgggggcaagcagccggagatgtctcgctccggcggcggat 68
Query: 371 ccaccgccatgtccaagagcaagctctctgacgcagaatcagaaactgacagcgaagaat 430
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct: 69 ccaccgccatgtccaagagcatgctctttgacgcagaatcagaaaccgacagcgaagaat 128
Query: 431 cagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagcttaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 129 cagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagtttaa 188
Query: 491 agggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctct 550
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct: 189 ggggtaatgagtttttctgtgaggttgatgacgagtacatacaagatgatttcaacctgt 248
Query: 551 gtgggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttg 610
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 249 gtgggctaagcaaccaagttccatattactactatgcgcttgatctgatattagatgttg 308
Query: 611 aatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctg 670
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 309 aatcttcccatggtgatatgttcacagaagagcaaaatgaactcattgaatcagctgctg 368
Query: 671 agatgctctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaa 730
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 369 agatgctctatggattgattcatgttcggtatattattacaagtaaagggttgtctgcaa 428
Query: 731 tgctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggcc 790
||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 429 tgctggataagtacaagaacgttgatttcggtagatgccctcgagtgaattgcagcggcc 488
Query: 791 aaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct: 489 aaccatgtcttcctgttgggcaatcagatgttcctcgttcgagtatggtgaagatt 544
>gb|CF480847.1|CF480847 POL1_68_G02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_G02_A002 3', mRNA sequence
Length = 742
Score = 747 bits (377), Expect = 0.0
Identities = 481/512 (93%), Gaps = 9/512 (1%)
Strand = Plus / Plus
Query: 558 aagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatcttc 617
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 1 aagcaaccaagttccatattacgactatgcgcttgatctgatattagatgttgaatcttc 60
Query: 618 ccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgct 677
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 ccatggtgatat-ttcacagaagagcaaaatgaactcattgaatcagctgctgagatgct 119
Query: 678 ctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatgctgga 737
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 120 ctatggattgattcatgttcggtatattattacaagtaaagggttgtcggcaatgctgga 179
Query: 738 taagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaaccatg 797
|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 180 taagtacaagaacgttgatttcggtagatgccctcgagtgaattgcagcggccaaccatg 239
Query: 798 ccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccctag 857
|||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct: 240 tcttcttgttgggcaatcagatgttcctcgttcgagtatggtgaagatttactgccctag 299
Query: 858 atgtgaagacatctacact-ccaagatccaaatatctaagca------acatcgacggga 910
||||||||||||||||||| |||||||||||| || |||||| ||||||||||||
Sbjct: 300 atgtgaagacatctacactnccaagatccaaacatttaagcaacatcgacatcgacggga 359
Query: 911 cttactttgggacaacattccc-ccacttgttcctgatgacatacccgcatttgaagccc 969
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 360 cttactttgggacaacattcccaccacttgttcctgatgacatacccgcatgtgaagccc 419
Query: 970 cagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatccgtaagccatga 1029
||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 420 cagaagccgttgcagcaatacgttcccagggtatttgggttcaaaattcataagccatga 479
Query: 1030 caaatttgaaggttgaatgtataaaaggttca 1061
||||||||||||||||| || |||||||||||
Sbjct: 480 caaatttgaaggttgaacgtgtaaaaggttca 511
Score = 133 bits (67), Expect = 5e-029
Identities = 114/130 (87%), Gaps = 11/130 (8%)
Strand = Plus / Plus
Query: 1089 gcagtgttcacacgacacgtcatcggaatacacctgacccgcggctgacctccctagtct 1148
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 566 gcagtgttcacacgacacgtcatcggaatacacctgacccccggctgacctccctagtct 625
Query: 1149 ggtttcttgctctggcctgaaattctga-ttgatgcttgtggtttgtttagcctagtgaa 1207
|||| |||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct: 626 ggtt----------gcctgatattctgatttgatgcttgtggtttgtttagcctagtcaa 675
Query: 1208 tcaatccata 1217
| | ||||||
Sbjct: 676 ttattccata 685
>gb|BG159117.1|BG159117 RHIZ2_28_B02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 417
Score = 676 bits (341), Expect = 0.0
Identities = 392/409 (95%)
Strand = Plus / Plus
Query: 311 gcgagaaggagcggatcggcgtgggcaagcagccggagatgcctcgctccggcggcggat 370
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 9 gcgagaaggagcggatcggcgggggcaagcagccggagatgtctcgctccggcggcggat 68
Query: 371 ccaccgccatgtccaagagcaagctctctgacgcagaatcagaaactgacagcgaagaat 430
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct: 69 ccaccgccatgtccaagagcatgctctttgacgcagaatcagaaaccgacagcgaagaat 128
Query: 431 cagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagcttaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 129 cagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagtttaa 188
Query: 491 agggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctct 550
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct: 189 ggggtaatgagtttttctgtgaggttgatgacgagtacatacaagatgatttcaacctgt 248
Query: 551 gtgggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttg 610
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 249 gtgggctaagcaaccaagttccatattactactatgcgcttgatctgatattagatgttg 308
Query: 611 aatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctg 670
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 309 aatcttcccatggtgatatgttcacagaagagcaaaatgaactcattgaatcagctgctg 368
Query: 671 agatgctctatggattgattcatgttcggtatattattacaagtaaagg 719
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agatgctctatggattgattcatgttcggtatattattacaagtaaagg 417
>gb|CF480911.1|CF480911 POL1_68_G02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_G02_A002 5', mRNA sequence
Length = 542
Score = 549 bits (277), Expect = e-154
Identities = 448/503 (89%), Gaps = 19/503 (3%)
Strand = Plus / Plus
Query: 5 gcgtactgctcccttcttcctcgttgctccgcccccttttgtcgtcgcgtcctcctctcg 64
||||||| ||||||||||||||| || |||||||||| ||||||||||| |||| | |
Sbjct: 52 gcgtactcctcccttcttcctcgccgccccgccccctt--gtcgtcgcgtcgtcctgttg 109
Query: 65 aggcctcggcagtcggcacgaggacgcgcgatcccgtcaccgctcacctccttctccaaa 124
||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||
Sbjct: 110 aggcctcggca-------cgagggcacgcgatcccgtcaccgctcgcctccttctccaaa 162
Query: 125 cactgactccgcttcccgtccccatcccgctg------cgcaagatcgggagggg-acga 177
|||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 163 cactagctccgcttcccgttcccatcccgctgtaacgccgcaagatcgggagggggacga 222
Query: 178 agagaggtcgaccgggaggagatgcaccgagaccgaggcgtctctgcggcagcgataccc 237
||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| | |||
Sbjct: 223 ggagaggtcggccgggaggagatgcaccgagaccgaggcgtctcggcggcggcggtcccc 282
Query: 238 ggtgaccggaagcggatcggcgagcctatggacagatcgtctccatctacgtcgtggggg 297
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct: 283 ggtgaccggaagcggatcggcgagccgatggacagatcgtctccgtccacgtcatggggg 342
Query: 298 ttctccggagggcgcgagaaggagcggatcggcgtgggcaagcagccggagatgcctcgc 357
|| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 343 ttttccggaggccgcgagaaggagcggatcggcgggggcaagcagccggagatgtctcgc 402
Query: 358 tccggcggcggatccaccgccatgtccaagagcaagctctctgacgcagaatcagaaact 417
|||||||| |||||||||||||| |||||||||| ||||| |||| |||||||||||
Sbjct: 403 tccggcggaggatccaccgccatctccaagagcatgctctttgac---gaatcagaaacc 459
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gacagcgaagaatcacatgtgagtggttctgatggggaagatacttcgtggatttcatgg 519
Query: 478 ttctgtagcttaaagggcaatga 500
|||||||| |||| ||| |||||
Sbjct: 520 ttctgtagtttaaggggtaatga 542
>gb|CN138974.1|CN138974 OX1_15_F09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_F09_A002 3', mRNA sequence
Length = 730
Score = 541 bits (273), Expect = e-152
Identities = 338/360 (93%), Gaps = 6/360 (1%)
Strand = Plus / Plus
Query: 708 tacaagtaaagggctgtccgcaatgctggataagtacaggaacgttgagttcggcagatg 767
||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||| |||||
Sbjct: 1 tacaagtaaagggttgtcggcaatgctggataagtacaagaacgttgatttcggtagatg 60
Query: 768 ccctcgagtgaattgcagcggccaaccatgccttcctgttgggcaatcggatgttcctcg 827
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 61 ccctcgagtgaattgcagcggccaaccatgtcttcctgttgggcaatcagatgttcctcg 120
Query: 828 ttcaagtacggtgaagatttactgccctagatgtgaagacatctacactccaagatccaa 887
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcgagtatggtgaagatttactgccctagatgtgaagacatctacactccaagatccaa 180
Query: 888 atatctaagca------acatcgacgggacttactttgggacaacattcccccacttgtt 941
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acatctaagcaacatcgacatcgacgggacttactttgggacaacattcccccacttgtt 240
Query: 942 cctgatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggt 1001
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 241 cctgatgacatacccgcatgtgaagccccagaagccgttgcagcaatacgttcccagggt 300
Query: 1002 atttgggttcaaaatccgtaagccatgacaaatttgaaggttgaatgtataaaaggttca 1061
||||||||||||||| | ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 301 atttgggttcaaaattcataagccatgacaaatttgaaggttgaacgtgtaaaaggttca 360
Score = 117 bits (59), Expect = 3e-024
Identities = 112/130 (86%), Gaps = 11/130 (8%)
Strand = Plus / Plus
Query: 1089 gcagtgttcacacgacacgtcatcggaatacacctgacccgcggctgacctccctagtct 1148
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 415 gcagtgttcccacgacacgtcatcggaatacccctgacccccggctgacctccctagtct 474
Query: 1149 ggtttcttgctctggcctgaaattctga-ttgatgcttgtggtttgtttagcctagtgaa 1207
|||| |||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct: 475 ggtt----------gcctgatattctgatttgatgcttgtggtttgtttagcctagtcaa 524
Query: 1208 tcaatccata 1217
| | ||||||
Sbjct: 525 ttattccata 534
>gb|BG052663.1|BG052663 RHIZ2_27_H08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 507
Score = 379 bits (191), Expect = e-103
Identities = 247/266 (92%), Gaps = 6/266 (2%)
Strand = Plus / Plus
Query: 802 cctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccctagatgt 861
|||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 1 cctgttgggcaatcagatgttcctcgttcgagtatggtgaagatttactgccctagatgt 60
Query: 862 gaagacatctacactccaagatccaaatatctaagcaacatc------gacgggacttac 915
||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 61 gaagacatctacactccaagatccaaacatttaagcaacatcgacatcgacgggacttac 120
Query: 916 tttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccagaag 975
|||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 121 tttgggacaacattcccccatttgttcttgatgacatacccgcatgtgaagccccagaag 180
Query: 976 ccgctgcagcaatacgttcccagggtatttgggttcaaaatccgtaagccatgacaaatt 1035
||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 181 ccgttgcagcaatacgttcccagggtatttgggttcaaaattcataagccatgacaaatt 240
Query: 1036 tgaaggttgaatgtataaaaggttca 1061
||||||||||| || |||||||||||
Sbjct: 241 tgaaggttgaacgtgtaaaaggttca 266
Score = 117 bits (59), Expect = 3e-024
Identities = 112/130 (86%), Gaps = 11/130 (8%)
Strand = Plus / Plus
Query: 1089 gcagtgttcacacgacacgtcatcggaatacacctgacccgcggctgacctccctagtct 1148
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 321 gcagtgttcacacgacacgtcatcggaatacacttgacccccggctgacctccctagtct 380
Query: 1149 ggtttcttgctctggcctgaaattctga-ttgatgcttgtggtttgtttagcctagtgaa 1207
|||| |||||| ||||||| |||||||||||||||||||||||| ||| ||
Sbjct: 381 ggtt----------gcctgatattctgatttgatgcttgtggtttgtttagccaagtcaa 430
Query: 1208 tcaatccata 1217
| | ||||||
Sbjct: 431 ttattccata 440
>gb|BG052677.1|BG052677 RHIZ2_28_B02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 437
Score = 297 bits (150), Expect = 1e-078
Identities = 191/205 (93%), Gaps = 6/205 (2%)
Strand = Plus / Plus
Query: 863 aagacatctacactccaagatccaaatatctaagcaacatcg------acgggacttact 916
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 1 aagacatctacactccaagatccaaacatctaagcaacatcgacatcgacgggacttact 60
Query: 917 ttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccagaagc 976
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 ttgggacaacattcccccatttgttcctgatgacatacccgcatgtgaagccccagaagc 120
Query: 977 cgctgcagcaatacgttcccagggtatttgggttcaaaatccgtaagccatgacaaattt 1036
|| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 121 cgttgcagcaatacgttcccagggtatttgggttcaaaattcataagccatgacaaattt 180
Query: 1037 gaaggttgaatgtataaaaggttca 1061
|||||||||| || |||||||||||
Sbjct: 181 gaaggttgaacgtgtaaaaggttca 205
Score = 125 bits (63), Expect = 1e-026
Identities = 113/130 (86%), Gaps = 11/130 (8%)
Strand = Plus / Plus
Query: 1089 gcagtgttcacacgacacgtcatcggaatacacctgacccgcggctgacctccctagtct 1148
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 gcagtgttcacacgacacgtcatcggaatacacctgacccccggctgacctccctagtct 319
Query: 1149 ggtttcttgctctggcctgaaattctga-ttgatgcttgtggtttgtttagcctagtgaa 1207
|||| |||||| ||||||| |||||||||||||||||||||||| ||| ||
Sbjct: 320 ggtt----------gcctgatattctgatttgatgcttgtggtttgtttagccaagtcaa 369
Query: 1208 tcaatccata 1217
| | ||||||
Sbjct: 370 ttattccata 379
>gb|BZ339082.1|BZ339082 ic29f12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic29f12 5', DNA sequence
Length = 677
Score = 276 bits (139), Expect = 5e-072
Identities = 157/163 (96%)
Strand = Plus / Minus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgc 286
Query: 959 atttgaagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatcc 1018
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 285 atgtgaagccccagaagccgttgcagcaatacgttcccagggtatttgggttcaaaattc 226
Query: 1019 gtaagccatgacaaatttgaaggttgaatgtataaaaggttca 1061
||||||||||||||||||||||||||| || |||||||||||
Sbjct: 225 ataagccatgacaaatttgaaggttgaacgtgtaaaaggttca 183
Score = 133 bits (67), Expect = 5e-029
Identities = 114/130 (87%), Gaps = 11/130 (8%)
Strand = Plus / Minus
Query: 1089 gcagtgttcacacgacacgtcatcggaatacacctgacccgcggctgacctccctagtct 1148
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 128 gcagtgttcacacgacacgtcatcggaatacacctgacccccggctgacctccctagtct 69
Query: 1149 ggtttcttgctctggcctgaaattctga-ttgatgcttgtggtttgtttagcctagtgaa 1207
|||| |||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct: 68 ggtt----------gcctgatattctgatttgatgcttgtggtttgtttagcctagtcaa 19
Query: 1208 tcaatccata 1217
| | ||||||
Sbjct: 18 ttattccata 9
>gb|CL185139.1|CL185139 104_399_10899321_116_32394_047 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899321, DNA
sequence
Length = 674
Score = 276 bits (139), Expect = 5e-072
Identities = 157/163 (96%)
Strand = Plus / Plus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgc 99
Query: 959 atttgaagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatcc 1018
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 100 atgtgaagccccagaagccgttgcagcaatacgttcccagggtatttgggttcaaaattc 159
Query: 1019 gtaagccatgacaaatttgaaggttgaatgtataaaaggttca 1061
||||||||||||||||||||||||||| || |||||||||||
Sbjct: 160 ataagccatgacaaatttgaaggttgaacgtgtaaaaggttca 202
Score = 133 bits (67), Expect = 5e-029
Identities = 114/130 (87%), Gaps = 11/130 (8%)
Strand = Plus / Plus
Query: 1089 gcagtgttcacacgacacgtcatcggaatacacctgacccgcggctgacctccctagtct 1148
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 257 gcagtgttcacacgacacgtcatcggaatacacctgacccccggctgacctccctagtct 316
Query: 1149 ggtttcttgctctggcctgaaattctga-ttgatgcttgtggtttgtttagcctagtgaa 1207
|||| |||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct: 317 ggtt----------gcctgatattctgatttgatgcttgtggtttgtttagcctagtcaa 366
Query: 1208 tcaatccata 1217
| | ||||||
Sbjct: 367 ttattccata 376
>gb|CW209191.1|CW209191 104_639_11189100_116_36988_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189100, DNA
sequence
Length = 716
Score = 276 bits (139), Expect = 5e-072
Identities = 157/163 (96%)
Strand = Plus / Minus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgc 398
Query: 959 atttgaagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatcc 1018
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 397 atgtgaagccccagaagccgttgcagcaatacgttcccagggtatttgggttcaaaattc 338
Query: 1019 gtaagccatgacaaatttgaaggttgaatgtataaaaggttca 1061
||||||||||||||||||||||||||| || |||||||||||
Sbjct: 337 ataagccatgacaaatttgaaggttgaacgtgtaaaaggttca 295
Score = 133 bits (67), Expect = 5e-029
Identities = 114/130 (87%), Gaps = 11/130 (8%)
Strand = Plus / Minus
Query: 1089 gcagtgttcacacgacacgtcatcggaatacacctgacccgcggctgacctccctagtct 1148
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 240 gcagtgttcacacgacacgtcatcggaatacacctgacccccggctgacctccctagtct 181
Query: 1149 ggtttcttgctctggcctgaaattctga-ttgatgcttgtggtttgtttagcctagtgaa 1207
|||| |||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct: 180 ggtt----------gcctgatattctgatttgatgcttgtggtttgtttagcctagtcaa 131
Query: 1208 tcaatccata 1217
| | ||||||
Sbjct: 130 ttattccata 121
>gb|CW209192.1|CW209192 104_639_11189100_148_36987_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189100, DNA
sequence
Length = 698
Score = 276 bits (139), Expect = 5e-072
Identities = 157/163 (96%)
Strand = Plus / Plus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgc 359
Query: 959 atttgaagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatcc 1018
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 360 atgtgaagccccagaagccgttgcagcaatacgttcccagggtatttgggttcaaaattc 419
Query: 1019 gtaagccatgacaaatttgaaggttgaatgtataaaaggttca 1061
||||||||||||||||||||||||||| || |||||||||||
Sbjct: 420 ataagccatgacaaatttgaaggttgaacgtgtaaaaggttca 462
Score = 133 bits (67), Expect = 5e-029
Identities = 114/130 (87%), Gaps = 11/130 (8%)
Strand = Plus / Plus
Query: 1089 gcagtgttcacacgacacgtcatcggaatacacctgacccgcggctgacctccctagtct 1148
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 517 gcagtgttcacacgacacgtcatcggaatacacctgacccccggctgacctccctagtct 576
Query: 1149 ggtttcttgctctggcctgaaattctga-ttgatgcttgtggtttgtttagcctagtgaa 1207
|||| |||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct: 577 ggtt----------gcctgatattctgatttgatgcttgtggtttgtttagcctagtcaa 626
Query: 1208 tcaatccata 1217
| | ||||||
Sbjct: 627 ttattccata 636
>gb|CN125521.1|CN125521 RHOH1_11_C10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_C10_A002 5', mRNA sequence
Length = 317
Score = 198 bits (100), Expect = 9e-049
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 373 accgccatgtccaagagcaagctctctgacgcagaatcagaaactgacagcgaagaatca 432
|||||||| |||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct: 187 accgccatctccaagagcatgctctttgacgcagaatcagaaaccgacagcgaagaatca 246
Query: 433 gatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagcttaaag 492
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 247 gatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagtttaagg 306
Query: 493 ggcaatga 500
|| |||||
Sbjct: 307 ggtaatga 314
Score = 127 bits (64), Expect = 3e-027
Identities = 109/123 (88%), Gaps = 7/123 (5%)
Strand = Plus / Plus
Query: 77 tcggcacgaggacgcgcgatcccgtcaccgctcacctccttctccaaacactgactccgc 136
||||||||||| | ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 3 tcggcacgagggcacgcgatcccgtcaccgctcgcctccttctccaaacactagctccgc 62
Query: 137 ttcccgtccccatcccgctg------cgcaagatcggga-ggggacgaagagaggtcgac 189
||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct: 63 ttcccgttcccatcccgctgtaacgccgcaagatcgggagggggacgaggagaggtcgac 122
Query: 190 cgg 192
|||
Sbjct: 123 cgg 125
Score = 93.7 bits (47), Expect = 4e-017
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 241 gaccggaagcggatcggcgagcctatggacagatcgtctccatctacgtcgtgggggttc 300
||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||
Sbjct: 120 gaccggaagcggatcggcgagccgatggacagatcgtctccgtccacgtcatgggggttt 179
Query: 301 tccggag 307
|||||||
Sbjct: 180 tccggag 186
>gb|CL187978.1|CL187978 104_404_10901272_114_32445_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901272, DNA
sequence
Length = 758
Score = 141 bits (71), Expect = 2e-031
Identities = 179/215 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||||||||| || ||||| ||||||||||| ||||| || || || ||||||
Sbjct: 170 gaaactgacagcgaagattctgatgtcagtggttctgagggggaggacacatcctggatt 229
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||| || ||||||||||| || |||||| | ||||| |||||||||
Sbjct: 230 tcatggttctgtacattgcgaggcaatgaattcttttgtgagatcgatgaagactacata 289
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||| ||||| ||||| || || || || || ||||||||||| |||||||||
Sbjct: 290 caggatgattttaacctgtgtggtctgagtaatcaggtcccatattatgattatgcactt 349
Query: 592 gatctgatattagatgttgaatcttcccatggtga 626
||||| || ||||| |||| ||||| |||||||
Sbjct: 350 gatctcatcttagacattgagtcttctaatggtga 384
>gb|CL187979.1|CL187979 104_404_10901272_116_32449_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901272, DNA
sequence
Length = 705
Score = 139 bits (70), Expect = 7e-031
Identities = 178/214 (83%)
Strand = Plus / Minus
Query: 413 aaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggattt 472
|||||||||||||||| || ||||| ||||||||||| ||||| || || || |||||||
Sbjct: 705 aaactgacagcgaagattctgatgtcagtggttctgagggggaggacacatcctggattt 646
Query: 473 catggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatac 532
|||||||||||| || ||||||||||| || |||||| | ||||| ||||||||||
Sbjct: 645 catggttctgtacattgcgaggcaatgaattcttttgtgagatcgatgaagactacatac 586
Query: 533 aagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttg 592
| |||||||| ||||| ||||| || || || || || ||||||||||| ||||||||||
Sbjct: 585 aggatgattttaacctgtgtggtctgagtaatcaggtcccatattatgattatgcacttg 526
Query: 593 atctgatattagatgttgaatcttcccatggtga 626
|||| || ||||| |||| ||||| |||||||
Sbjct: 525 atctcatcttagacattgagtcttctaatggtga 492
>gb|BG051126.1|BG051126 FM1_56_F02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 482
Score = 139 bits (70), Expect = 7e-031
Identities = 163/194 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||||||||| || ||||| ||||||||||| ||||| || || || ||||||
Sbjct: 205 gaaactgacagcgaagattctgatgtcagtggttctgagggggaggacacatcctggatt 264
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||| || ||||||||||| || |||||| | ||||| |||||||||
Sbjct: 265 tcatggttctgtacattgcgaggcaatgaattcttttgtgagatcgatgaagactacata 324
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||| ||||| ||||| || || || || || ||||||||||| |||||||||
Sbjct: 325 caggatgattttaacctgtgtggtctgagtaatcacgtcccatattatgattatgcactt 384
Query: 592 gatctgatattaga 605
||||| || |||||
Sbjct: 385 gatctcatcttaga 398
>gb|AW286827.2|AW286827 LG1_222_A02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 127 bits (64), Expect = 3e-027
Identities = 256/320 (80%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| || || ||||| || ||||| || || ||||||||||||| |||
Sbjct: 164 gaagcatcagatgttagcggctctgacggagaagacacctcatggatttcatggtactgc 223
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
| | | | ||| ||||| || |||||||| || || ||||| || || ||||| || |||
Sbjct: 224 aaccttagggggaatgagttcttctgtgaagtcgacgatgattatattcaagacgacttc 283
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
||||| ||||| || |||| ||||||||| |||||||| ||||| || ||||| || |||
Sbjct: 284 aacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcatttta 343
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
||| | || || || |||||||||||||| || || || || ||||| ||| | ||||||
Sbjct: 344 gatatcgagtcatctcatggtgatatgttcaccgaggaacagaatgagcttgtagaatca 403
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
||||| |||||||| ||||| |||| |||| || || ||| |||| |||||||| |||
Sbjct: 404 gctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaaaggactg 463
Query: 724 tccgcaatgctggataagta 743
| ||||||||||| |||||
Sbjct: 464 gctgcaatgctggagaagta 483
>gb|AW671986.1|AW671986 LG1_353_B10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 127 bits (64), Expect = 3e-027
Identities = 256/320 (80%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| || || ||||| || ||||| || || ||||||||||||| |||
Sbjct: 195 gaagcatcagatgttagcggctctgacggagaagacacctcatggatttcatggtactgc 254
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
| | | | ||| ||||| || |||||||| || || ||||| || || ||||| || |||
Sbjct: 255 aaccttagggggaatgagttcttctgtgaagtcgacgatgattatattcaagacgacttc 314
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
||||| ||||| || |||| ||||||||| |||||||| ||||| || ||||| || |||
Sbjct: 315 aacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcatttta 374
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
||| | || || || |||||||||||||| || || || || ||||| ||| | ||||||
Sbjct: 375 gatatcgagtcatctcatggtgatatgttcaccgaggaacagaatgagcttgtagaatca 434
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
||||| |||||||| ||||| |||| |||| || || ||| |||| |||||||| |||
Sbjct: 435 gctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaaaggactg 494
Query: 724 tccgcaatgctggataagta 743
| ||||||||||| |||||
Sbjct: 495 gctgcaatgctggagaagta 514
>gb|CF760790.1|CF760790 DSAF1_66_F10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_F10_A011 5', mRNA sequence
Length = 502
Score = 127 bits (64), Expect = 3e-027
Identities = 256/320 (80%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| || || ||||| || ||||| || || ||||||||||||| |||
Sbjct: 96 gaagcatcagatgttagcggctctgacggagaagacacctcatggatttcatggtactgc 155
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
| | | | ||| ||||| || |||||||| || || ||||| || || ||||| || |||
Sbjct: 156 aaccttagggggaatgagttcttctgtgaagtcgacgatgattatattcaagacgacttc 215
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
||||| ||||| || |||| ||||||||| |||||||| ||||| || ||||| || |||
Sbjct: 216 aacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcatttta 275
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
||| | || || || |||||||||||||| || || || || ||||| ||| | ||||||
Sbjct: 276 gatatcgagtcatctcatggtgatatgttcaccgaggaacagaatgagcttgtagaatca 335
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
||||| |||||||| ||||| |||| |||| || || ||| |||| |||||||| |||
Sbjct: 336 gctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaaaggactg 395
Query: 724 tccgcaatgctggataagta 743
| ||||||||||| |||||
Sbjct: 396 gctgcaatgctggagaagta 415
>gb|BG104074.1|BG104074 RHIZ2_40_B12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 435
Score = 119 bits (60), Expect = 7e-025
Identities = 255/320 (79%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| || || ||||| || ||||| || || ||||||||||||| |||
Sbjct: 68 gaagcatcagatgttagcggctctgacggagaagacacctcatggatttcatggtactgc 127
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
| | | | ||| || || || |||||||| || || ||||| || || ||||| || |||
Sbjct: 128 aaccttagggggaacgagttcttctgtgaagtcgacgatgattatattcaagacgacttc 187
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
||||| ||||| || |||| ||||||||| |||||||| ||||| || ||||| || |||
Sbjct: 188 aacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcatttta 247
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
||| | || || || |||||||||||||| || || || || ||||| ||| | ||||||
Sbjct: 248 gatatcgagtcatctcatggtgatatgttcaccgaggaacagaatgagcttgtagaatca 307
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
||||| |||||||| ||||| |||| |||| || || ||| |||| |||||||| |||
Sbjct: 308 gctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaaaggactg 367
Query: 724 tccgcaatgctggataagta 743
| ||||||||||| |||||
Sbjct: 368 gctgcaatgctggagaagta 387
>gb|CN126390.1|CN126390 RHOH1_16_G12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G12_A002 5', mRNA sequence
Length = 608
Score = 109 bits (55), Expect = 7e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||||||||| || ||||| ||||||||||| ||||| || || || ||||||
Sbjct: 447 gaaactgacagcgaagattctgatgtcagtggttctgagggggaggacacgtcctggatt 506
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||| || ||||||||||| || |||||| | ||||| |||||||||
Sbjct: 507 tcatggttctgtacattgcgaggcaatgaattcttttgtgagatcgatgaagactacata 566
Query: 532 caagatgatttcaacctctgtgg 554
|| |||||||| ||||| |||||
Sbjct: 567 caggatgattttaacctgtgtgg 589
>gb|CN151685.1|CN151685 WOUND1_77_A02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_77_A02_A002 3', mRNA sequence
Length = 728
Score = 105 bits (53), Expect = 1e-020
Identities = 236/297 (79%)
Strand = Plus / Plus
Query: 658 gaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaa 717
||||||||||| |||||||| ||||| |||| |||| || || ||| |||| ||||||
Sbjct: 3 gaatcagctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaaa 62
Query: 718 gggctgtccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgagtg 777
|| ||| | ||||||||||| ||||| | |||| ||| || || | ||||| || ||
Sbjct: 63 ggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccacgtgtt 122
Query: 778 aattgcagcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacg 837
| ||| |||| ||||||||||| || ||||| ||||| ||| | | ||| || |||||
Sbjct: 123 tactgctgcggtcaaccatgcctgccagttggacaatcagatatccatcgatctagtacc 182
Query: 838 gtgaagatttactgccctagatgtgaagacatctacactccaagatccaaatatctaagc 897
|||||||| |||||||| | ||||||||||||||| ||| | ||||| || | | ||
Sbjct: 183 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 242
Query: 898 aacatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatac 954
||||||||||| | |||||||||||||| ||||| || |||||||||||||||||
Sbjct: 243 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 299
>gb|CD213655.1|CD213655 HS1_52_H08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_H08_A012 3', mRNA sequence
Length = 695
Score = 101 bits (51), Expect = 2e-019
Identities = 237/298 (79%), Gaps = 1/298 (0%)
Strand = Plus / Plus
Query: 658 gaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaa 717
||||||||||| |||||||| ||||| |||| |||| || || ||| |||| ||||||
Sbjct: 22 gaatcagctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaaa 81
Query: 718 gggctgtccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgagtg 777
|| ||| | ||||||||||| ||||| | |||| ||| || || | ||||| || ||
Sbjct: 82 ggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccacgtgtt 141
Query: 778 aattgcagcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacg 837
| ||| |||| ||||||||||| || ||||| ||||| ||| | | ||| || |||||
Sbjct: 142 tactgctgcggtcaaccatgcctgccagttggacaatcagatatccatcgatctagtacc 201
Query: 838 gtgaagatttactgccctagatgtgaagacatctac-actccaagatccaaatatctaag 896
|||||||| |||||||| | ||||||||||||||| || | | | ||||| || | | |
Sbjct: 202 gtgaagatatactgccccaagtgtgaagacatctactacccnacggtccaagtaccaagg 261
Query: 897 caacatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatac 954
|||||||||||| | |||||||||||||| ||||| || |||||||||||||||||
Sbjct: 262 caacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 319
>gb|BG051449.1|BG051449 FM1_56_F02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 85.7 bits (43), Expect = 1e-014
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 876 tccaagatccaaatatctaagcaacatcgacgggacttactttgggacaacattccccca 935
|||||||||||| || | | ||||||| || || | ||||||||||| |||||||||||
Sbjct: 146 tccaagatccaagtaccaaggcaacattgatggatcatactttgggacgacattccccca 205
Query: 936 cttgttcctgatgacatacccgcatttgaagccccagaagccgctgcagcaatac 990
| ||||||||||| || ||||| |||||||| ||||||||| |||||||||||
Sbjct: 206 tcttttcctgatgacttatccgcacttgaagccgcagaagccgttgcagcaatac 260
>gb|AW283663.1|AW283663 LG1_222_A03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctacactccaagatccaaatat 891
||||| |||||||| |||||||| | ||||||||||||||| ||| | ||||| ||
Sbjct: 23 agtaccgtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtac 82
Query: 892 ctaagcaacatcgacgggacttactttgggacaacattcccccacttgttcctgatgaca 951
| | ||||||||||||| | |||||||||||||| ||||| || ||||||||||||||
Sbjct: 83 caaggcaacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgaca 142
Query: 952 tac 954
|||
Sbjct: 143 tac 145
>gb|AW747488.1|AW747488 WS1_68_D08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 77.8 bits (39), Expect = 2e-012
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 876 tccaagatccaaatatctaagcaacatcgacgggacttactttgggacaacattccccca 935
|||||||||||| || | | ||||||| || || | ||||||||||| |||||||||||
Sbjct: 161 tccaagatccaagtaccaaggcaacattgatggatcatactttgggacgacattccccca 220
Query: 936 cttgttcctgatgacatacccgcatttgaagccccagaagccgctgcagcaatac 990
| ||||||||||| || || || |||||||| ||||||||| |||||||||||
Sbjct: 221 tcttttcctgatgacttatccacacttgaagccgcagaagccgttgcagcaatac 275
>gb|BE593318.1|BE593318 WS1_100_C08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 580
Score = 77.8 bits (39), Expect = 2e-012
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 876 tccaagatccaaatatctaagcaacatcgacgggacttactttgggacaacattccccca 935
|||||||||||| || | | ||||||| || || | ||||||||||| |||||||||||
Sbjct: 245 tccaagatccaagtaccaaggcaacattgatggatcatactttgggacgacattccccca 304
Query: 936 cttgttcctgatgacatacccgcatttgaagccccagaagccgctgcagcaatac 990
| ||||||||||| || || || |||||||| ||||||||| |||||||||||
Sbjct: 305 tcttttcctgatgacttatccacacttgaagccgcagaagccgttgcagcaatac 359
>gb|CF758320.1|CF758320 DSAF1_30_C09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_C09_A011 3', mRNA sequence
Length = 555
Score = 77.8 bits (39), Expect = 2e-012
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 876 tccaagatccaaatatctaagcaacatcgacgggacttactttgggacaacattccccca 935
|||||||||||| || | | ||||||| || || | ||||||||||| |||||||||||
Sbjct: 172 tccaagatccaagtaccaaggcaacattgatggatcatactttgggacgacattccccca 231
Query: 936 cttgttcctgatgacatacccgcatttgaagccccagaagccgctgcagcaatac 990
| ||||||||||| || || || |||||||| ||||||||| |||||||||||
Sbjct: 232 tcttttcctgatgacttatccacacttgaagccgcagaagccgttgcagcaatac 286
>gb|CN126300.1|CN126300 RHOH1_16_G12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G12_A002 3', mRNA sequence
Length = 725
Score = 77.8 bits (39), Expect = 2e-012
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 876 tccaagatccaaatatctaagcaacatcgacgggacttactttgggacaacattccccca 935
|||||||||||| || | | ||||||| || || | ||||||||||| |||||||||||
Sbjct: 341 tccaagatccaagtaccaaggcaacattgatggatcatactttgggacgacattccccca 400
Query: 936 cttgttcctgatgacatacccgcatttgaagccccagaagccgctgcagcaatac 990
| ||||||||||| || || || |||||||| ||||||||| |||||||||||
Sbjct: 401 tcttttcctgatgacttatccacacttgaagccgcagaagccgttgcagcaatac 455
Score = 73.8 bits (37), Expect = 4e-011
Identities = 127/157 (80%)
Strand = Plus / Plus
Query: 536 atgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatc 595
||||||| ||||| ||||| || || || || || ||||||||||| |||||||||||||
Sbjct: 1 atgattttaacctgtgtggtctgagtaatcaggtcccatattatgattatgcacttgatc 60
Query: 596 tgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaactta 655
| || ||||| |||| ||||| |||||||| |||| || || |||||||| ||| | |
Sbjct: 61 tcatcttagacattgagtcttctaatggtgatgtgttcactgaggagcaaaacgaattaa 120
Query: 656 ttgaatcagctgctgagatgctctatggattgattca 692
| || || |||| |||||||| |||||||| |||||
Sbjct: 121 tcgagtcgtctgcagagatgctgtatggattaattca 157
>gb|CW133689.1|CW133689 104_517_11116897_116_34808_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116897, DNA
sequence
Length = 677
Score = 75.8 bits (38), Expect = 9e-012
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 913 tactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccag 972
||||||||||| ||||||||||| | ||||||||||| || || || |||||||| |||
Sbjct: 350 tactttgggacgacattcccccatcttttcctgatgacttatccacacttgaagccgcag 409
Query: 973 aagccgctgcagcaatac 990
|||||| |||||||||||
Sbjct: 410 aagccgttgcagcaatac 427
>gb|BE356603.1|BE356603 DG1_126_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 61.9 bits (31), Expect = 1e-007
Identities = 100/123 (81%)
Strand = Plus / Plus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctacactccaagatccaaatat 891
||||| |||||||| | |||||| | ||||||||||||||| ||| | ||||| ||
Sbjct: 24 agtaccgtgaagatatcctgccccaagtgtgaagacatctactacccacggtccaagtac 83
Query: 892 ctaagcaacatcgacgggacttactttgggacaacattcccccacttgttcctgatgaca 951
| | || |||||||||| | |||||||||||||| ||||| || ||||||||||||||
Sbjct: 84 caaggctacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgaca 143
Query: 952 tac 954
|||
Sbjct: 144 tac 146
>gb|BG103736.1|BG103736 RHIZ2_40_B12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 628
Score = 61.9 bits (31), Expect = 1e-007
Identities = 137/170 (80%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 785 gcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaaga 844
|||| ||||||||||| || ||||| ||||| ||| | | ||| || ||||| |||||||
Sbjct: 22 gcggtcaaccatgcctgccagttggacaatcagatatccatcgatctagtaccgtgaaga 81
Query: 845 tttactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcg 904
| |||||||| | ||||||||||||||| ||| | ||||| || | ||| ||||||
Sbjct: 82 tatactgccccaagtgtgaagacatctactacccacggtccaagta-ccaag--acatcg 138
Query: 905 acgggacttactttgggacaacattcccccacttgttcctgatgacatac 954
|||| | |||||||||||||| ||||| || |||| ||||||||||||
Sbjct: 139 acggcgcatactttgggacaacgttccctcatctgtttctgatgacatac 188
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 315,413
Number of Sequences: 832831
Number of extensions: 315413
Number of successful extensions: 86428
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86327
Number of HSP's gapped (non-prelim): 84
length of query: 1311
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1291
effective length of database: 474,703,049
effective search space: 612841636259
effective search space used: 612841636259
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)