BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493499.2.1
(785 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW028597.1|CW028597 104_255_10499187_116_30393 Sorghum m... 515 e-144
gb|CW420929.1|CW420929 fsbb001f128i03f0 Sorghum methylation... 250 2e-064
gb|CW087763.1|CW087763 104_432_10947820_114_32553_008 Sorgh... 115 6e-024
gb|CW087764.1|CW087764 104_432_10947820_116_32557_008 Sorgh... 115 6e-024
gb|CF485420.1|CF485420 POL1_31_A03.g1_A002 Pollen Sorghum b... 94 2e-017
gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorgh... 68 1e-009
gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorgh... 68 1e-009
gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorgh... 68 1e-009
gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation... 68 1e-009
gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation... 68 1e-009
gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum m... 66 5e-009
gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorgh... 62 8e-008
gb|CW439050.1|CW439050 fsbb001f156p22f0 Sorghum methylation... 58 1e-006
gb|CD228503.1|CD228503 CCC1_8_D11.b1_A007 Callus culture/ce... 58 1e-006
gb|CL154403.1|CL154403 104_339_10781385_114_31371_249 Sorgh... 56 5e-006
gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum m... 56 5e-006
gb|CW111348.1|CW111348 104_484_11104259_148_34527_038 Sorgh... 56 5e-006
gb|CW249523.1|CW249523 104_711_11222896_116_35042_058 Sorgh... 56 5e-006
gb|CW288258.1|CW288258 104_766_11411855_148_35535_086 Sorgh... 56 5e-006
gb|BE358440.1|BE358440 DG1_29_G10.g1_A002 Dark Grown 1 (DG1... 56 5e-006
gb|BG410775.1|BG410775 EM1_25_F05.g1_A002 Embryo 1 (EM1) So... 56 5e-006
gb|CD428859.1|CD428859 ETH1_1_C11.b1_A002 Ethylene-treated ... 56 5e-006
gb|CX607843.1|CX607843 ANR1_31_C11.b1_A002 Anaerobic roots ... 56 5e-006
gb|CX617551.1|CX617551 GABR1_34_H10.b1_A002 GA- or brassino... 56 5e-006
gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum m... 52 8e-005
gb|CW064529.1|CW064529 104_310_10522620_115_30146 Sorghum m... 52 8e-005
gb|CW069511.1|CW069511 104_319_10525937_1_30093 Sorghum met... 52 8e-005
gb|CW234267.1|CW234267 104_687_11213889_148_37382_033 Sorgh... 52 8e-005
gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorgh... 52 8e-005
gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorgh... 52 8e-005
gb|CD221508.1|CD221508 CCC1_55_C03.b1_A007 Callus culture/c... 52 8e-005
gb|BZ366101.1|BZ366101 ic94f06.g1 WGS-SbicolorF (JM107 adap... 50 3e-004
gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum m... 50 3e-004
gb|CW265845.1|CW265845 104_735_11232105_116_35269_041 Sorgh... 50 3e-004
gb|CW270523.1|CW270523 104_742_11402473_116_35332_011 Sorgh... 50 3e-004
gb|CW479719.1|CW479719 fsbb001f238g06k0 Sorghum methylation... 50 3e-004
gb|CW483111.1|CW483111 fsbb001f244j08f0 Sorghum methylation... 50 3e-004
gb|CW491158.1|CW491158 fsbb001f280o13k0 Sorghum methylation... 50 3e-004
gb|CW493408.1|CW493408 fsbb001f284c16f0 Sorghum methylation... 50 3e-004
gb|CF433443.1|CF433443 NIT1_27_C07.b1_A002 Nitrogen-deficie... 50 3e-004
gb|CX614147.1|CX614147 GABR1_12_H01.b1_A002 GA- or brassino... 50 3e-004
gb|CL155906.1|CL155906 104_342_10782487_114_31473_199 Sorgh... 48 0.001
gb|CL155907.1|CL155907 104_342_10782487_116_31474_199 Sorgh... 48 0.001
gb|CW173419.1|CW173419 104_585_11156835_148_36550_014 Sorgh... 48 0.001
gb|CW296771.1|CW296771 104_778_11461693_116_35628_051 Sorgh... 48 0.001
gb|CW296772.1|CW296772 104_778_11461693_148_35632_051 Sorgh... 48 0.001
gb|CW338052.1|CW338052 104_838_11484537_148_36123_043 Sorgh... 48 0.001
gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation... 48 0.001
gb|CW021352.1|CW021352 104_160_10431214_5_30005 Sorghum met... 46 0.005
gb|CW108847.1|CW108847 104_480_11097740_148_34500_070 Sorgh... 46 0.005
gb|CW214968.1|CW214968 104_647_11194293_148_37162_093 Sorgh... 46 0.005
gb|CW262205.1|CW262205 104_729_11229928_116_35210_054 Sorgh... 46 0.005
gb|BM323424.1|BM323424 PIC1_19_B04.b1_A002 Pathogen-infecte... 46 0.005
gb|BM323694.1|BM323694 PIC1_22_C02.b1_A002 Pathogen-infecte... 46 0.005
gb|CD211873.1|CD211873 HS1_67_C01.b1_A012 Heat-shocked seed... 46 0.005
gb|CL194299.1|CL194299 104_418_10941524_116_32288_070 Sorgh... 44 0.019
gb|CW316550.1|CW316550 104_808_11472951_148_35857_064 Sorgh... 44 0.019
gb|CD233295.1|CD233295 SS1_13_C04.b1_A012 Salt-stressed see... 44 0.019
gb|CF427347.1|CF427347 PH1_1_C12.b1_A002 Phosphorous-defici... 44 0.019
gb|CN145147.1|CN145147 WOUND1_27_C09.b2_A002 Wounded leaves... 44 0.019
gb|CN150564.1|CN150564 WOUND1_70_B11.b1_A002 Wounded leaves... 44 0.019
gb|CX619395.1|CX619395 GABR1_45_E08.b1_A002 GA- or brassino... 44 0.019
gb|CW091090.1|CW091090 104_451_10997655_116_32541_025 Sorgh... 42 0.076
gb|CW100088.1|CW100088 104_467_11003911_148_34384_026 Sorgh... 42 0.076
gb|CW130771.1|CW130771 104_513_11115302_116_34783_057 Sorgh... 42 0.076
gb|CW223631.1|CW223631 104_659_11203019_116_37185_038 Sorgh... 42 0.076
gb|CW223632.1|CW223632 104_659_11203019_148_37186_038 Sorgh... 42 0.076
gb|CW241137.1|CW241137 104_700_11218601_148_37542_077 Sorgh... 42 0.076
gb|CW383061.1|CW383061 fsbb001f065g05f0 Sorghum methylation... 42 0.076
gb|CF489797.1|CF489797 POL1_59_E03.g1_A002 Pollen Sorghum b... 42 0.076
gb|CL147748.1|CL147748 104_327_10592607_148_31780_115 Sorgh... 40 0.30
gb|CL149078.1|CL149078 104_329_10593534_148_31784_274 Sorgh... 40 0.30
gb|CW042236.1|CW042236 104_276_10507002_114_30476 Sorghum m... 40 0.30
gb|CW042237.1|CW042237 104_276_10507002_116_30487 Sorghum m... 40 0.30
gb|CW056365.1|CW056365 104_298_10517643_115_30157 Sorghum m... 40 0.30
gb|CW195141.1|CW195141 104_618_11180481_148_37428_037 Sorgh... 40 0.30
gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorgh... 40 0.30
gb|CW272945.1|CW272945 104_745_11403641_148_35360_075 Sorgh... 40 0.30
gb|CW358431.1|CW358431 fsbb001f025j05k0 Sorghum methylation... 40 0.30
gb|CW471327.1|CW471327 fsbb001f225c13k0 Sorghum methylation... 40 0.30
gb|BE359001.1|BE359001 DG1_38_F04.b1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1... 40 0.30
gb|CF487063.1|CF487063 POL1_41_B10.g1_A002 Pollen Sorghum b... 40 0.30
gb|CF488524.1|CF488524 POL1_50_C02.g1_A002 Pollen Sorghum b... 40 0.30
>gb|CW028597.1|CW028597 104_255_10499187_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499187, DNA
sequence
Length = 836
Score = 515 bits (260), Expect = e-144
Identities = 400/446 (89%), Gaps = 3/446 (0%)
Strand = Plus / Plus
Query: 161 aaatgtagtccaccagaccgtcgagagccaaactaattcctcctccttctgcaacgcact 220
||||||| |||||||| || || |||||||||||| | |||||||||| ||||| ||||
Sbjct: 270 aaatgtactccaccaggccatcaagagccaaactagctgctcctccttcagcaacacact 329
Query: 221 gcttcgcctgcgccttaagaagccgagccctctcccttggcccctgtggccccagctcgc 280
|||||||||| || | || | |||||| |||||||| |||||||| |||||||| || |
Sbjct: 330 ccttcgcctgccccatcagtaaccgagctctctccctcggcccctgcggccccagttccc 389
Query: 281 cggccatcagctttctagccgccttcgccatggctgtcctctcaagcggcttcccgacct 340
|| ||| |||| |||| | | |||||||||| |||||||| ||||||||||||||||
Sbjct: 390 cgaccaccagccttctgatcatcctcgccatggccgtcctctccagcggcttcccgacct 449
Query: 341 cgtacccgatgccccactggtgcgtcacatacctcgcgttcactatctgctcggcgaagc 400
|| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 450 cgaacccgacgccccactggtgcgtcacgtacctcgcgttcactatctgctcggcgaaga 509
Query: 401 acggctgcacgagcatgggcaccccttcggatatggcctccaccatggatttccacccgc 460
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct: 510 acggctgcacgagcatgggcaccccttcggctatggcctccaccatggagttccagccgc 569
Query: 461 agtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgcggtgcccacg 520
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 570 agtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgcggcgcccacg 629
Query: 521 ccacgatcttgcccctgtgcctcaccgtctcgcggagctcctccgggac---cggcggca 577
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 630 ccacgatcttgcccctgtgcctcaccgtctcgcggagctcctccggcaccggcggcggca 689
Query: 578 catcctcctcatccgcgtccgcgccg 603
| |||||||| ||||||||| |||||
Sbjct: 690 cctcctcctcctccgcgtccacgccg 715
Score = 155 bits (78), Expect = 7e-036
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 606 gacggagccgcggcggaggacccacaggaacggcacgccgctgccggccagcgcccacgc 665
|||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 739 gacggagccgcggcggagcacccacaggaacggcacgccactggccgccagcgcccacgc 798
Query: 666 cgtctcctcgaacacggcgcggtcgacgcgcgccacgc 703
|||||||||||||||||||||||| |||||||||||||
Sbjct: 799 cgtctcctcgaacacggcgcggtccacgcgcgccacgc 836
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 acatgcagttcattattcagagc 112
|||||||||||||||||||||||
Sbjct: 194 acatgcagttcattattcagagc 216
>gb|CW420929.1|CW420929 fsbb001f128i03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f128i03, DNA
sequence
Length = 515
Score = 250 bits (126), Expect = 2e-064
Identities = 165/178 (92%)
Strand = Plus / Plus
Query: 606 gacggagccgcggcggaggacccacaggaacggcacgccgctgccggccagcgcccacgc 665
|||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 131 gacggagccgcggcggagcacccacaggaacggcacgccactggccgccagcgcccacgc 190
Query: 666 cgtctcctcgaacacggcgcggtcgacgcgcgccacgctgcccatgctgacgtacagaac 725
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 191 cgtctcctcgaacacggcgcggtccacgcgcgccacgctgcccatgctgacgtacagcac 250
Query: 726 ggagcgcggcgggcgcgcgtccagccacgccaagcaggtggggtccggcgcgtcctgg 783
||| |||||||| ||||||||||||||||||| |||| | |||||||||||| ||||
Sbjct: 251 ggaccgcggcggccgcgcgtccagccacgccaggcagctccggtccggcgcgtgctgg 308
Score = 145 bits (73), Expect = 7e-033
Identities = 99/107 (92%), Gaps = 3/107 (2%)
Strand = Plus / Plus
Query: 500 cctccctctgcggtgcccacgccacgatcttgcccctgtgcctcaccgtctcgcggagct 559
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctccctctgcggcgcccacgccacgatcttgcccctgtgcctcaccgtctcgcggagct 60
Query: 560 cctccgggac---cggcggcacatcctcctcatccgcgtccgcgccg 603
||||||| || ||||||||| |||||||| ||||||||| |||||
Sbjct: 61 cctccggcaccggcggcggcacctcctcctcctccgcgtccacgccg 107
>gb|CW087763.1|CW087763 104_432_10947820_114_32553_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947820, DNA
sequence
Length = 735
Score = 115 bits (58), Expect = 6e-024
Identities = 122/141 (86%), Gaps = 3/141 (2%)
Strand = Plus / Minus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcctcgaacacggcg 684
||||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||| ||
Sbjct: 392 acccacaggaacggcacaccgcttccggccagcccccacgccatctcctcgaacacgccg 333
Query: 685 cggtcgacgcgcgccacgctgcccatgctgacgtacagaacggagcgcg--gcgggc-gc 741
|||||||||| |||| ||| || | ||| |||||||| |||||||||| || ||| ||
Sbjct: 332 cggtcgacgcaggccaggctcccgaggctcacgtacaggacggagcgcgccgccggctgc 273
Query: 742 gcgtccagccacgccaagcag 762
||||||||||| |||| ||||
Sbjct: 272 gcgtccagccaagccaggcag 252
Score = 67.9 bits (34), Expect = 1e-009
Identities = 118/146 (80%)
Strand = Plus / Minus
Query: 373 ctcgcgttcactatctgctcggcgaagcacggctgcacgagcatgggcaccccttcggat 432
||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||| || |
Sbjct: 647 ctcgcgttcaccatctggtccgcgaagcatggctgcacaagcatgggcacgcctccgcag 588
Query: 433 atggcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgc 492
| | ||||| || || ||||| || ||||||||||||||| |||| | || | ||||
Sbjct: 587 acgctctccagtatcgagttccatccacagtgcgtccagaacgcaccaatggcggcgtgc 528
Query: 493 gccaggacctccctctgcggtgccca 518
|||| |||||| || ||||| |||||
Sbjct: 527 gccaagacctctctttgcggagccca 502
>gb|CW087764.1|CW087764 104_432_10947820_116_32557_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947820, DNA
sequence
Length = 726
Score = 115 bits (58), Expect = 6e-024
Identities = 122/141 (86%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcctcgaacacggcg 684
||||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||| ||
Sbjct: 439 acccacaggaacggcacaccgcttccggccagcccccacgccatctcctcgaacacgccg 498
Query: 685 cggtcgacgcgcgccacgctgcccatgctgacgtacagaacggagcgcg--gcgggc-gc 741
|||||||||| |||| ||| || | ||| |||||||| |||||||||| || ||| ||
Sbjct: 499 cggtcgacgcaggccaggctcccgaggctcacgtacaggacggagcgcgccgccggctgc 558
Query: 742 gcgtccagccacgccaagcag 762
||||||||||| |||| ||||
Sbjct: 559 gcgtccagccaagccaggcag 579
Score = 67.9 bits (34), Expect = 1e-009
Identities = 118/146 (80%)
Strand = Plus / Plus
Query: 373 ctcgcgttcactatctgctcggcgaagcacggctgcacgagcatgggcaccccttcggat 432
||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||| || |
Sbjct: 184 ctcgcgttcaccatctggtccgcgaagcatggctgcacaagcatgggcacgcctccgcag 243
Query: 433 atggcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgccgggtgc 492
| | ||||| || || ||||| || ||||||||||||||| |||| | || | ||||
Sbjct: 244 acgctctccagtatcgagttccatccacagtgcgtccagaacgcaccaatggcggcgtgc 303
Query: 493 gccaggacctccctctgcggtgccca 518
|||| |||||| || ||||| |||||
Sbjct: 304 gccaagacctctctttgcggagccca 329
>gb|CF485420.1|CF485420 POL1_31_A03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_A03_A002 5', mRNA sequence
Length = 534
Score = 93.7 bits (47), Expect = 2e-017
Identities = 94/109 (86%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 628 cacaggaacggcacgccgctgccggccagcgcccacgccgtctcctcgaaca---cggcg 684
|||||||||||||||||||||| ||||| | |||||||| |||||||||| | || ||
Sbjct: 153 cacaggaacggcacgccgctgcgggccaacccccacgccatctcctcgaagacgccgccg 212
Query: 685 cggtcgacgcgcgccacgctgcccatgctgacgtacagaacggagcgcg 733
|||||||||| ||||||||||||| ||| ||||| || ||||||||||
Sbjct: 213 cggtcgacgcaggccacgctgcccaggctcacgtagagcacggagcgcg 261
>gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 602
Score = 67.9 bits (34), Expect = 1e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 412 agcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtgcgtccag 471
|||||||||||||||||| | ||| ||||| | | || ||||| |||||||||||||||
Sbjct: 262 agcatgggcaccccttcgcagatgccctccgtcgtcgagttccagccgcagtgcgtccag 321
Query: 472 aacccacccaccgccgggtgcgccaggacctccctctgcggtgcccacgccacgatcttg 531
|| || ||||| || |||| ||| |||||| |||||| ||||||||||||| ||||
Sbjct: 322 aagccgcccacggcgcggtggcgcagcacctcctcctgcggcgcccacgccacgaccttg 381
Query: 532 cc 533
||
Sbjct: 382 cc 383
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 463 acccacaggaacggcacgccgctgccggcgatgccccacgccgtctcc 510
>gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 577
Score = 67.9 bits (34), Expect = 1e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 412 agcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtgcgtccag 471
|||||||||||||||||| | ||| ||||| | | || ||||| |||||||||||||||
Sbjct: 475 agcatgggcaccccttcgcagatgccctccgtcgtcgagttccagccgcagtgcgtccag 416
Query: 472 aacccacccaccgccgggtgcgccaggacctccctctgcggtgcccacgccacgatcttg 531
|| || ||||| || |||| ||| |||||| |||||| ||||||||||||| ||||
Sbjct: 415 aagccgcccacggcgcggtggcgcagcacctcctcctgcggcgcccacgccacgaccttg 356
Query: 532 cc 533
||
Sbjct: 355 cc 354
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 274 acccagaggaacggcacgccgctgccggcgatgccccacgccgtctcc 227
>gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 707
Score = 67.9 bits (34), Expect = 1e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 412 agcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtgcgtccag 471
|||||||||||||||||| | ||| ||||| | | || ||||| |||||||||||||||
Sbjct: 416 agcatgggcaccccttcgcagatgccctccgtcgtcgagttccagccgcagtgcgtccag 475
Query: 472 aacccacccaccgccgggtgcgccaggacctccctctgcggtgcccacgccacgatcttg 531
|| || ||||| || |||| ||| |||||| |||||| ||||||||||||| ||||
Sbjct: 476 aagccgcccacggcgcggtggcgcagcacctcctcctgcggcgcccacgccacgaccttg 535
Query: 532 cc 533
||
Sbjct: 536 cc 537
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct: 617 acccagaggaacggcacgccgctgccggcgaatgcccacgccgtctcc 664
>gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006d02, DNA
sequence
Length = 704
Score = 67.9 bits (34), Expect = 1e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 412 agcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtgcgtccag 471
|||||||||||||||||| | ||| ||||| | | || ||||| |||||||||||||||
Sbjct: 436 agcatgggcaccccttcgcagatgccctccgtcgtcgagttccagccgcagtgcgtccag 495
Query: 472 aacccacccaccgccgggtgcgccaggacctccctctgcggtgcccacgccacgatcttg 531
|| || ||||| || |||| ||| |||||| |||||| ||||||||||||| ||||
Sbjct: 496 aagccgcccacggcgcggtggcgcagcacctcctcctgcggcgcccacgccacgaccttg 555
Query: 532 cc 533
||
Sbjct: 556 cc 557
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 637 acccagaggaacggcacgccgctgccggcgatgccccacgccgtctcc 684
>gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235j04, DNA
sequence
Length = 541
Score = 67.9 bits (34), Expect = 1e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 412 agcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtgcgtccag 471
|||||||||||||||||| | ||| ||||| | | || ||||| |||||||||||||||
Sbjct: 471 agcatgggcaccccttcgcagatgccctccgtcgtcgagttccagccgcagtgcgtccag 412
Query: 472 aacccacccaccgccgggtgcgccaggacctccctctgcggtgcccacgccacgatcttg 531
|| || ||||| || |||| ||| |||||| |||||| ||||||||||||| ||||
Sbjct: 411 aagccgcccacggcgcggtggcgcagcacctcctcctgcggcgcccacgccacgaccttg 352
Query: 532 cc 533
||
Sbjct: 351 cc 350
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 270 acccagaggaacggcacgccgctgccggcgatgccccacgccgtctcc 223
>gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506614, DNA
sequence
Length = 710
Score = 65.9 bits (33), Expect = 5e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
||||| |||||||||||||||||| | ||||| || |||||| ||||||||||| ||||
Sbjct: 423 ttccagccgcagtgcgtccagaacgcgcccacggcggggtgctccaggacctcctcctgc 482
Query: 511 ggtgcccac 519
|| ||||||
Sbjct: 483 ggcgcccac 491
>gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472951, DNA
sequence
Length = 665
Score = 61.9 bits (31), Expect = 8e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
||||| |||||||||||||||||||| ||||| || |||| ||| |||||| ||||
Sbjct: 556 ttccagccgcagtgcgtccagaacccgcccacggcgcggtggcgcagcacctcctcctgc 615
Query: 511 ggtgcccacgccacgatcttgcc 533
|| ||||||||||||| ||||||
Sbjct: 616 ggcgcccacgccacgaccttgcc 638
>gb|CW439050.1|CW439050 fsbb001f156p22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156p22, DNA
sequence
Length = 466
Score = 58.0 bits (29), Expect = 1e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||| |||||||||| |||||||| |||| ||||| |||||| ||||
Sbjct: 327 ttccacccgcagtggctccagaacccgcccaccgcgcggtgggccagcacctcctgctgc 386
Query: 511 ggtgcccac 519
|| ||||||
Sbjct: 387 ggcgcccac 395
>gb|CD228503.1|CD228503 CCC1_8_D11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_D11_A007 3', mRNA sequence
Length = 647
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtg 491
|||||||||||||||||| |||||||||||| ||||||||
Sbjct: 73 ttccacccgcagtgcgtcacgaacccacccactgccgggtg 33
>gb|CL154403.1|CL154403 104_339_10781385_114_31371_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781385, DNA
sequence
Length = 735
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 77 acccagaggaacggcacgccgctgccggcgatgccccacgccgtctcc 124
>gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 556
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 273 acccagaggaacggcacgccgctgccggcgatgccccacgccgtctcc 226
>gb|CW111348.1|CW111348 104_484_11104259_148_34527_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104259, DNA
sequence
Length = 568
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 46 acccagaggaacggcacgccgctgccggcgatgccccacgccgtctcc 93
>gb|CW249523.1|CW249523 104_711_11222896_116_35042_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 631
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 462 acccagaggaacggcacgccgctgccggcgatgccccacgccgtctcc 415
Score = 48.1 bits (24), Expect = 0.001
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
||||| ||||||||||||||||| || ||||| || |||| ||| |||||| |||
Sbjct: 624 ttccagccgcagtgcgtccagaagccgcccacggcgcggtggcgcagcacctcctcntgc 565
Query: 511 ggtgcccacgccacgatcttgcc 533
|| ||||||||||||| ||||||
Sbjct: 564 ggcgcccacgccacgaccttgcc 542
>gb|CW288258.1|CW288258 104_766_11411855_148_35535_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411855, DNA
sequence
Length = 502
Score = 56.0 bits (28), Expect = 5e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| |||||| ||||| |||||||| | ||||| | || |||||
Sbjct: 56 ttccacccgcagtgcgtcacgaacccgcccactgccgggtgggtcaggatcaccatctgc 115
Query: 511 ggtgccca 518
|| |||||
Sbjct: 116 ggcgccca 123
>gb|BE358440.1|BE358440 DG1_29_G10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 56.0 bits (28), Expect = 5e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| |||||| ||||| |||||||| | ||||| | || |||||
Sbjct: 157 ttccacccgcagtgcgtcacgaacccgcccactgccgggtgggtcaggatcaccatctgc 98
Query: 511 ggtgccca 518
|| |||||
Sbjct: 97 ggcgccca 90
>gb|BG410775.1|BG410775 EM1_25_F05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 56.0 bits (28), Expect = 5e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| |||||| ||||| |||||||| | ||||| | || |||||
Sbjct: 162 ttccacccgcagtgcgtcacgaacccgcccactgccgggtgggtcaggatcaccatctgc 103
Query: 511 ggtgccca 518
|| |||||
Sbjct: 102 ggcgccca 95
>gb|CD428859.1|CD428859 ETH1_1_C11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_1_C11_A002 3', mRNA sequence
Length = 721
Score = 56.0 bits (28), Expect = 5e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| |||||| ||||| |||||||| | ||||| | || |||||
Sbjct: 149 ttccacccgcagtgcgtcatgaacccgcccactgccgggtgggtcaggatcaccatctgc 90
Query: 511 ggtgccca 518
|| |||||
Sbjct: 89 ggcgccca 82
>gb|CX607843.1|CX607843 ANR1_31_C11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_31_C11_A002 3', mRNA sequence
Length = 775
Score = 56.0 bits (28), Expect = 5e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| |||||| ||||| |||||||| | ||||| | || |||||
Sbjct: 211 ttccacccgcagtgcgtcacgaacccgcccactgccgggtgggtcaggatcaccatctgc 152
Query: 511 ggtgccca 518
|| |||||
Sbjct: 151 ggcgccca 144
>gb|CX617551.1|CX617551 GABR1_34_H10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_34_H10_A002 3', mRNA sequence
Length = 760
Score = 56.0 bits (28), Expect = 5e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| |||||| ||||| |||||||| | ||||| | || |||||
Sbjct: 225 ttccacccgcagtgcgtcacgaacccgcccactgccgggtgggtcaggatcaccatctgc 166
Query: 511 ggtgccca 518
|| |||||
Sbjct: 165 ggcgccca 158
>gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515929, DNA
sequence
Length = 565
Score = 52.0 bits (26), Expect = 8e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 466 gtccagaacccacccaccgccgggtgcgccaggacctccctctgcggtgcccac 519
||||| || ||||| ||||||||||||||||| |||||| |||||| ||||||
Sbjct: 462 gtccaaaatccaccgaccgccgggtgcgccagcacctccagctgcggcgcccac 515
>gb|CW064529.1|CW064529 104_310_10522620_115_30146 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522620, DNA
sequence
Length = 574
Score = 52.0 bits (26), Expect = 8e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 714 gacgtacagaacggagcgcggcgggcgcgcgtccagccacgc 755
|||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 447 gacgtacaccacggagcgtggcgggtgcgcgtccagccacgc 406
>gb|CW069511.1|CW069511 104_319_10525937_1_30093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525937, DNA
sequence
Length = 609
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| ||| || ||||| |||| |||||| |||| |||| |||||
Sbjct: 383 ttccacccgcagtgcgtcacgaagccgcccacggccgcgtgcgcgaggatctccttctgc 442
Query: 511 gg 512
||
Sbjct: 443 gg 444
>gb|CW234267.1|CW234267 104_687_11213889_148_37382_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213889, DNA
sequence
Length = 548
Score = 52.0 bits (26), Expect = 8e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 714 gacgtacagaacggagcgcggcgggcgcgcgtccagccacgc 755
|||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 282 gacgtacaccacggagcgtggcgggtgcgcgtccagccacgc 241
>gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 697
Score = 52.0 bits (26), Expect = 8e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 466 gtccagaacccacccaccgccgggtgcgccaggacctccctctgcggtgcccac 519
||||| || ||||| ||||||||||||||||| |||||| |||||| ||||||
Sbjct: 400 gtccaaaatccaccgaccgccgggtgcgccagcacctccagctgcggcgcccac 453
>gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 704
Score = 52.0 bits (26), Expect = 8e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 466 gtccagaacccacccaccgccgggtgcgccaggacctccctctgcggtgcccac 519
||||| || ||||| ||||||||||||||||| |||||| |||||| ||||||
Sbjct: 589 gtccaaaatccaccgaccgccgggtgcgccagcacctccagctgcggcgcccac 536
>gb|CD221508.1|CD221508 CCC1_55_C03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_55_C03_A007 3', mRNA sequence
Length = 594
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgg 488
|||||||||||||||||| |||||||||||| |||||
Sbjct: 38 ttccacccgcagtgcgtcacgaacccacccactgccgg 1
>gb|BZ366101.1|BZ366101 ic94f06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic94f06 5', DNA sequence
Length = 692
Score = 50.1 bits (25), Expect = 3e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 412 agcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtgcgtccag 471
|||||||||||||| ||| | ||||||| | |||| ||||| |||||||||||| |
Sbjct: 553 agcatgggcacccccgcggccaccgcctccagcgtggagttccagccgcagtgcgtcagg 612
Query: 472 aacccacccaccgccgggtgc 492
|||| |||||||||||||||
Sbjct: 613 aaccaccccaccgccgggtgc 633
>gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522696, DNA
sequence
Length = 605
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||| |||||||||| |||||||| |||| |||| |||||| ||||
Sbjct: 303 ttccacccgcagtggctccagaacccgcccaccgcgcggtggcccagcacctcctgctgc 362
Query: 511 ggtgcccac 519
|| ||||||
Sbjct: 363 ggcgcccac 371
>gb|CW265845.1|CW265845 104_735_11232105_116_35269_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232105, DNA
sequence
Length = 650
Score = 50.1 bits (25), Expect = 3e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 412 agcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtgcgtccag 471
|||||||||||||| ||| | ||||||| | |||| ||||| |||||||||||| |
Sbjct: 456 agcatgggcacccccgcggccaccgcctccagcgtggagttccagccgcagtgcgtcagg 515
Query: 472 aacccacccaccgccgggtgc 492
|||| |||||||||||||||
Sbjct: 516 aaccaccccaccgccgggtgc 536
>gb|CW270523.1|CW270523 104_742_11402473_116_35332_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402473, DNA
sequence
Length = 584
Score = 50.1 bits (25), Expect = 3e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 412 agcatgggcaccccttcggatatggcctccaccatggatttccacccgcagtgcgtccag 471
|||||||||||||| ||| | ||||||| | |||| ||||| |||||||||||| |
Sbjct: 316 agcatgggcacccccgcggccaccgcctccagcgtggagttccagccgcagtgcgtcagg 375
Query: 472 aacccacccaccgccgggtgc 492
|||| |||||||||||||||
Sbjct: 376 aaccaccccaccgccgggtgc 396
>gb|CW479719.1|CW479719 fsbb001f238g06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238g06, DNA
sequence
Length = 565
Score = 50.1 bits (25), Expect = 3e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 433 atggcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgc 485
|||||||||| | |||| |||||||||||||||||| |||| | ||||||||
Sbjct: 155 atggcctccatcgtggagttccacccgcagtgcgtcacgaacgcgcccaccgc 207
>gb|CW483111.1|CW483111 fsbb001f244j08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244j08, DNA
sequence
Length = 597
Score = 50.1 bits (25), Expect = 3e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 433 atggcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgc 485
|||||||||| | |||| |||||||||||||||||| |||| | ||||||||
Sbjct: 183 atggcctccatcgtggagttccacccgcagtgcgtcacgaacgcgcccaccgc 235
>gb|CW491158.1|CW491158 fsbb001f280o13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f280o13, DNA
sequence
Length = 516
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 452 tccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgcg 511
|||| |||||||||||| ||| || |||| || |||| |||||||||||||||||||
Sbjct: 356 tccagccgcagtgcgtcacgaagccggccacggcgtggtgagccaggacctccctctgcg 297
Query: 512 gtgcccacg 520
| |||||||
Sbjct: 296 gcgcccacg 288
>gb|CW493408.1|CW493408 fsbb001f284c16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284c16, DNA
sequence
Length = 631
Score = 50.1 bits (25), Expect = 3e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 433 atggcctccaccatggatttccacccgcagtgcgtccagaacccacccaccgc 485
|||||||||| | |||| |||||||||||||||||| |||| | ||||||||
Sbjct: 487 atggcctccatcgtggagttccacccgcagtgcgtcacgaacgcgcccaccgc 435
>gb|CF433443.1|CF433443 NIT1_27_C07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_27_C07_A002 3', mRNA sequence
Length = 542
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||| |||||||||| |||||||| |||| |||| |||||| ||||
Sbjct: 174 ttccacccgcagtggctccagaacccgcccaccgcgcggtggcccagcacctcctgctgc 115
Query: 511 ggtgcccac 519
|| ||||||
Sbjct: 114 ggcgcccac 106
>gb|CX614147.1|CX614147 GABR1_12_H01.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_12_H01_A002 3', mRNA sequence
Length = 483
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||| |||||||||| |||||||| |||| |||| |||||| ||||
Sbjct: 175 ttccacccgcagtggctccagaacccgcccaccgcgcggtggcccagcacctcctgctgc 116
Query: 511 ggtgcccac 519
|| ||||||
Sbjct: 115 ggcgcccac 107
>gb|CL155906.1|CL155906 104_342_10782487_114_31473_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782487, DNA
sequence
Length = 752
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccac 482
|||||||| | |||||||||||||||||||||
Sbjct: 720 ttccacccaccgtgcgtccagaacccacccac 689
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 625 acccacaggaacggcacgccgctgccggccagcgcccacgccgtctcc 672
||||| ||||||||||||| ||||||||| | ||||||||||||||
Sbjct: 549 acccagaggaacggcacgctgctgccggcgatgccccacgccgtctcc 502
>gb|CL155907.1|CL155907 104_342_10782487_116_31474_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782487, DNA
sequence
Length = 729
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccac 482
|||||||| | |||||||||||||||||||||
Sbjct: 694 ttccacccaccgtgcgtccagaacccacccac 725
>gb|CW173419.1|CW173419 104_585_11156835_148_36550_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156835, DNA
sequence
Length = 683
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 432 tatggcctccaccatggatttccacccgcagtgcgt 467
||||||||||| | |||| |||||||||||||||||
Sbjct: 514 tatggcctccagcgtggagttccacccgcagtgcgt 549
>gb|CW296771.1|CW296771 104_778_11461693_116_35628_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461693, DNA
sequence
Length = 643
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 432 tatggcctccaccatggatttccacccgcagtgcgt 467
||||||||||| | |||| |||||||||||||||||
Sbjct: 615 tatggcctccagcgtggagttccacccgcagtgcgt 580
>gb|CW296772.1|CW296772 104_778_11461693_148_35632_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461693, DNA
sequence
Length = 651
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 432 tatggcctccaccatggatttccacccgcagtgcgt 467
||||||||||| | |||| |||||||||||||||||
Sbjct: 123 tatggcctccagcgtggagttccacccgcagtgcgt 158
>gb|CW338052.1|CW338052 104_838_11484537_148_36123_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484537, DNA
sequence
Length = 673
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 451 ttccacccgcagtgcgtccagaacccacccaccgccgggtgcgccaggacctccctctgc 510
|||||||||||||||||| ||| || ||||| |||| |||||| |||| |||| |||||
Sbjct: 60 ttccacccgcagtgcgtcacgaagccgcccacggccgcgtgcgcgaggatctccttctgc 1
>gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f081l05, DNA
sequence
Length = 604
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 451 ttccacccgcagtgcgtccagaacccacccac 482
||||| |||||||||||||||||||| |||||
Sbjct: 438 ttccagccgcagtgcgtccagaacccgcccac 469
>gb|CW021352.1|CW021352 104_160_10431214_5_30005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431214, DNA
sequence
Length = 445
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 724 acggagcgcggcgggcgcgcgtccagccacgccaagcag 762
|||||||||||||| |||||||||||||| ||| ||||
Sbjct: 257 acggagcgcggcggctgcgcgtccagccaccccacgcag 295
>gb|CW108847.1|CW108847 104_480_11097740_148_34500_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097740, DNA
sequence
Length = 305
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 724 acggagcgcggcgggcgcgcgtccagccacgccaagcag 762
|||||||||||||| |||||||||||||| ||| ||||
Sbjct: 192 acggagcgcggcggctgcgcgtccagccaccccacgcag 230
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 247,563
Number of Sequences: 832831
Number of extensions: 247563
Number of successful extensions: 74633
Number of sequences better than 0.5: 84
Number of HSP's better than 0.5 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74469
Number of HSP's gapped (non-prelim): 154
length of query: 785
length of database: 491,359,669
effective HSP length: 20
effective length of query: 765
effective length of database: 474,703,049
effective search space: 363147832485
effective search space used: 363147832485
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)