BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2486118.2.1
(635 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW285511.1|AW285511 LG1_241_E06.g1_A002 Light Grown 1 (L... 513 e-144
gb|BE363123.1|BE363123 DG1_9_B09.g1_A002 Dark Grown 1 (DG1)... 513 e-144
gb|BG103495.1|BG103495 RHIZ2_37_C06.g1_A003 Rhizome2 (RHIZ2... 402 e-110
gb|CF071040.1|CF071040 FE1_15_B03.b1_A002 Iron-deficient se... 307 7e-082
gb|CW026623.1|CW026623 104_252_10498051_116_30520 Sorghum m... 168 4e-040
gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum m... 163 2e-038
gb|CL190999.1|CL190999 104_409_10906474_116_32497_037 Sorgh... 155 6e-036
gb|CW411521.1|CW411521 fsbb001f106l17k0 Sorghum methylation... 155 6e-036
gb|CW464011.1|CW464011 fsbb001f213a09f0 Sorghum methylation... 155 6e-036
gb|BZ332309.1|BZ332309 hx26h05.b1 WGS-SbicolorF (JM107 adap... 147 1e-033
gb|CW056868.1|CW056868 104_298_10517912_115_30157 Sorghum m... 143 2e-032
gb|AW283377.1|AW283377 LG1_223_D12.g1_A002 Light Grown 1 (L... 50 3e-004
gb|AW565409.1|AW565409 LG1_343_G07.g1_A002 Light Grown 1 (L... 50 3e-004
gb|BG947765.1|BG947765 IP1_8_G12.g1_A002 Immature pannicle ... 50 3e-004
gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle ... 50 3e-004
gb|BI074550.1|BI074550 IP1_16_A11.g1_A002 Immature pannicle... 50 3e-004
gb|CW235147.1|CW235147 104_690_11214827_148_37411_042 Sorgh... 48 0.001
gb|CW025732.1|CW025732 104_227_10488364_114_30506 Sorghum m... 44 0.015
gb|CW411352.1|CW411352 fsbb001f106h21f0 Sorghum methylation... 44 0.015
gb|CF072959.1|CF072959 FE1_27_D01.b1_A002 Iron-deficient se... 42 0.061
gb|CX608205.1|CX608205 ANR1_37_F12.b1_A002 Anaerobic roots ... 42 0.061
>gb|AW285511.1|AW285511 LG1_241_E06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 513 bits (259), Expect = e-144
Identities = 333/358 (93%)
Strand = Plus / Plus
Query: 5 ggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatg 64
||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct: 71 ggcgacgacgtggacgacgagtttgcagacctgtacatcgtcaagtggacatcgctgatg 130
Query: 65 atcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgc 124
||||||||||||||||||||||||||||||||||||||||| || || || |||||||||
Sbjct: 131 atcccgcccatcgtgatcatgatggtgaacctgatcggcattgccgtgggcttcagccgc 190
Query: 125 accatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttc 184
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 191 accatctacagcgagatcccgcagtggagcaagctgctgggtggtgtcttcttcagcttc 250
Query: 185 tgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacg 244
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 251 tgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggagagggcgcacg 310
Query: 245 ccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtg 304
|| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 311 cccaccatcgtcttcgtctgggcaggactcctctccatcaccatctccctgctgtgggtc 370
Query: 305 gccatcaacccgccgtcccagaaccagcagattggtgggtcgttcacattcccgtgaa 362
|||||||||||||| || |||||||||||||||||| || ||||| ||||| ||||
Sbjct: 371 gccatcaacccgccatctgggaaccagcagattggtggatccttcaccttcccctgaa 428
Score = 42.1 bits (21), Expect = 0.061
Identities = 38/43 (88%), Gaps = 3/43 (6%)
Strand = Plus / Plus
Query: 533 atactcttatgatgagctatagtagtagttcttttgttctttt 575
||||| ||||||||||||| |||| ||||||||||||||||
Sbjct: 581 atactgttatgatgagctaaagta---gttcttttgttctttt 620
>gb|BE363123.1|BE363123 DG1_9_B09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 513 bits (259), Expect = e-144
Identities = 333/358 (93%)
Strand = Plus / Plus
Query: 5 ggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatg 64
||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct: 30 ggcgacgacgtggacgacgagtttgcagacctgtacatcgtcaagtggacatcgctgatg 89
Query: 65 atcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgc 124
||||||||||||||||||||||||||||||||||||||||| || || || |||||||||
Sbjct: 90 atcccgcccatcgtgatcatgatggtgaacctgatcggcattgccgtgggcttcagccgc 149
Query: 125 accatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttc 184
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 150 accatctacagcgagatcccgcagtggagcaagctgctgggtggtgtcttcttcagcttc 209
Query: 185 tgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacg 244
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 210 tgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggagagggcgcacg 269
Query: 245 ccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtg 304
|| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 270 cccaccatcgtcttcgtctgggcaggactcctctccatcaccatctccctgctgtgggtc 329
Query: 305 gccatcaacccgccgtcccagaaccagcagattggtgggtcgttcacattcccgtgaa 362
|||||||||||||| || |||||||||||||||||| || ||||| ||||| ||||
Sbjct: 330 gccatcaacccgccatctgggaaccagcagattggtggatccttcaccttcccctgaa 387
>gb|BG103495.1|BG103495 RHIZ2_37_C06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 380
Score = 402 bits (203), Expect = e-110
Identities = 269/291 (92%)
Strand = Plus / Plus
Query: 72 ccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatct 131
|||| ||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct: 1 ccattgtgatcatgatggtgaacctgatcggcattgccgtgggcttcagccgcaccatct 60
Query: 132 acagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgc 191
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 acagcgagatcccgcagtggagcaagctgctgggcggtgtcttcttcagcttctgggtgc 120
Query: 192 tggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacca 251
|||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||
Sbjct: 121 tggcgcacctgtacccattcgccaagggcctgatggggcggagagggcgcacgcccacca 180
Query: 252 tcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatca 311
|||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 181 tcgtcttcgtctgggcaggactcctctccatcaccatctccctgctgtgggtcgccatca 240
Query: 312 acccgccgtcccagaaccagcagattggtgggtcgttcacattcccgtgaa 362
||||||| || |||||||||||||||||| || ||||| ||||| ||||
Sbjct: 241 acccgccatctgggaaccagcagattggtggatccttcaccttcccctgaa 291
>gb|CF071040.1|CF071040 FE1_15_B03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_B03_A002 3', mRNA sequence
Length = 505
Score = 307 bits (155), Expect = 7e-082
Identities = 197/211 (93%)
Strand = Plus / Plus
Query: 132 acagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgc 191
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 acagcgagatcccgcagtggagcaagctgctgggtggtgtcttcttcagcttctgggtgc 60
Query: 192 tggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacca 251
||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||
Sbjct: 61 tggcgcacctgtacccgttcgccaaggccctgatggggcggagagggcgcacgcccacca 120
Query: 252 tcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatca 311
|||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 121 tcgtcttcgtctgggcaggactcctctccatcaccatctccctgctgtgggtcgccatca 180
Query: 312 acccgccgtcccagaaccagcagattggtgg 342
||||||| || ||||||||||||||||||
Sbjct: 181 acccgccatctgggaaccagcagattggtgg 211
Score = 48.1 bits (24), Expect = 0.001
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 533 atactcttatgatgagctatagtagtagttcttttgttcttttgtttttg 582
||||| ||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 384 atactgttatgatgagctaaagtag---ttcttttgttcttttatttttg 430
>gb|CW026623.1|CW026623 104_252_10498051_116_30520 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498051, DNA
sequence
Length = 650
Score = 168 bits (85), Expect = 4e-040
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 62 tacagcgagttcccgcagtggagcaagctgctgggcggcgccttcttcagcttctgggtg 121
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||| ||||| ||||||||||||||||| || |||| || | ||||| |||||||
Sbjct: 122 ctgtgccacctctacccgttcgccaagggactcctgggccgccgcggccgtgtgccgacc 181
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggt 303
||||| ||||||||| |||| ||| ||||||| |||||||||||||| |||||
Sbjct: 182 atcgtgttcgtctggtcggggctcatctccatgaccatctcgctgctctgggt 234
>gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505258, DNA
sequence
Length = 675
Score = 163 bits (82), Expect = 2e-038
Identities = 157/182 (86%)
Strand = Plus / Plus
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 305 gagatcccgcagtacagcaagctgctgggcggcggcttcttcagcttctgggtgctggcg 364
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||| ||||||||||||||||| || ||||| || | || ||||| |||||| |||||
Sbjct: 365 cactactacccgttcgccaaggggctcatgggccgccgcggacgcacaccgaccctcgtc 424
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
| |||||||||||| ||| ||||||||||| |||| ||||| ||| | |||||| ||||
Sbjct: 425 tacgtctgggcggggctcatctccatcaccgtctccctgctctggatcaccatcagcccg 484
Query: 317 cc 318
||
Sbjct: 485 cc 486
Score = 40.1 bits (20), Expect = 0.24
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 26 ttcncggacctgtacatcgtcaagtggacgtcgct 60
||| |||| |||||| |||| ||||||||||||||
Sbjct: 194 ttcgcggagctgtacctcgtgaagtggacgtcgct 228
>gb|CL190999.1|CL190999 104_409_10906474_116_32497_037 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906474, DNA
sequence
Length = 770
Score = 155 bits (78), Expect = 6e-036
Identities = 168/198 (84%)
Strand = Plus / Minus
Query: 122 cgcaccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagc 181
|||||| |||||||||| | ||||| ||| ||||| | | ||||||| ||||||||||
Sbjct: 502 cgcaccgtctacagcgacaacccgcgctggggcaagttcatcggcggcggcttcttcagc 443
Query: 182 ttctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgc 241
|||||||||||||||||||| ||||| |||||||||||||| ||||| || | |||
Sbjct: 442 ttctgggtgctggcgcacctctaccccttcgccaagggcctcatgggccgccgcggcaag 383
Query: 242 acgccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgg 301
||||| |||||||||||||| ||| |||| ||| |||||||||||||||| ||||| |||
Sbjct: 382 acgcccaccatcgtcttcgtttggtcgggactcatctccatcaccatctccctgctctgg 323
Query: 302 gtggccatcaacccgccg 319
|| ||||||| |||||||
Sbjct: 322 gttgccatcagcccgccg 305
>gb|CW411521.1|CW411521 fsbb001f106l17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f106l17, DNA
sequence
Length = 677
Score = 155 bits (78), Expect = 6e-036
Identities = 168/198 (84%)
Strand = Plus / Minus
Query: 122 cgcaccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagc 181
|||||| |||||||||| | ||||| ||| ||||| | | ||||||| ||||||||||
Sbjct: 321 cgcaccgtctacagcgacaacccgcgctggggcaagttcatcggcggcggcttcttcagc 262
Query: 182 ttctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgc 241
|||||||||||||||||||| ||||| |||||||||||||| ||||| || | |||
Sbjct: 261 ttctgggtgctggcgcacctctaccccttcgccaagggcctcatgggccgccgcggcaag 202
Query: 242 acgccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgg 301
||||| |||||||||||||| ||| |||| ||| |||||||||||||||| ||||| |||
Sbjct: 201 acgcccaccatcgtcttcgtttggtcgggactcatctccatcaccatctccctgctctgg 142
Query: 302 gtggccatcaacccgccg 319
|| ||||||| |||||||
Sbjct: 141 gttgccatcagcccgccg 124
>gb|CW464011.1|CW464011 fsbb001f213a09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213a09, DNA
sequence
Length = 634
Score = 155 bits (78), Expect = 6e-036
Identities = 168/198 (84%)
Strand = Plus / Minus
Query: 122 cgcaccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagc 181
|||||| |||||||||| | ||||| ||| ||||| | | ||||||| ||||||||||
Sbjct: 543 cgcaccgtctacagcgacaacccgcgctggggcaagttcatcggcggcggcttcttcagc 484
Query: 182 ttctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgc 241
|||||||||||||||||||| ||||| |||||||||||||| ||||| || | |||
Sbjct: 483 ttctgggtgctggcgcacctctaccccttcgccaagggcctcatgggccgccgcggcaag 424
Query: 242 acgccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgg 301
||||| |||||||||||||| ||| |||| ||| |||||||||||||||| ||||| |||
Sbjct: 423 acgcccaccatcgtcttcgtttggtcgggactcatctccatcaccatctccctgctctgg 364
Query: 302 gtggccatcaacccgccg 319
|| ||||||| |||||||
Sbjct: 363 gttgccatcagcccgccg 346
>gb|BZ332309.1|BZ332309 hx26h05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx26h05 5', DNA sequence
Length = 649
Score = 147 bits (74), Expect = 1e-033
Identities = 150/174 (86%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 628 tacagcgagttcccgcagtggagcaagctgctgggcggcgccttcttcagcttttgggtg 569
Query: 191 ctggcgcacctgtacccg-ttcgccaagggcctgatggggcggaggggccgcacgccgac 249
||| ||||| |||||| ||||||||||| || |||| || | ||||| ||||||
Sbjct: 568 ctgtgccacctctacccgtttcgccaagggactcctgggccgccgcggccgtgtgccgac 509
Query: 250 catcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggt 303
|||||| ||||||||| |||| ||| ||||||| |||||||||||||| |||||
Sbjct: 508 catcgtgttcgtctggtcggggctcatctccatgaccatctcgctgctctgggt 455
>gb|CW056868.1|CW056868 104_298_10517912_115_30157 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517912, DNA
sequence
Length = 446
Score = 143 bits (72), Expect = 2e-032
Identities = 129/148 (87%)
Strand = Plus / Plus
Query: 172 cttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcg 231
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 3 cttcttcagcttctgggtgctggcgcacctctaccccttcgccaagggcctcatgggccg 62
Query: 232 gaggggccgcacgccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
| ||| ||||| |||||||||||||| ||| |||| ||| ||||||||||||||||
Sbjct: 63 ccgcggcaagacgcccaccatcgtcttcgtttggtcgggactcatctccatcaccatctc 122
Query: 292 gctgctgtgggtggccatcaacccgccg 319
||||| ||||| ||||||| |||||||
Sbjct: 123 cctgctctgggttgccatcagcccgccg 150
>gb|AW283377.1|AW283377 LG1_223_D12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 197 cacctgtacccgttcgccaagggcctgatgggg 229
||||||||||||||| ||||||||||||||||
Sbjct: 180 cacctgtacccgttcctcaagggcctgatgggg 212
>gb|AW565409.1|AW565409 LG1_343_G07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 182 ttctgggtgctggcgcacctgtacccgttcgccaagggcct 222
|||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1 ttctgggtgctgttccacctctacccgttcgccaagggcct 41
>gb|BG947765.1|BG947765 IP1_8_G12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 197 cacctgtacccgttcgccaagggcctgatgggg 229
||||||||||||||| ||||||||||||||||
Sbjct: 195 cacctgtacccgttcctcaagggcctgatgggg 227
>gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 197 cacctgtacccgttcgccaagggcctgatgggg 229
||||||||||||||| ||||||||||||||||
Sbjct: 473 cacctgtacccgttcctcaagggcctgatgggg 505
>gb|BI074550.1|BI074550 IP1_16_A11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 197 cacctgtacccgttcgccaagggcctgatgggg 229
||||||||||||||| ||||||||||||||||
Sbjct: 197 cacctgtacccgttcctcaagggcctgatgggg 229
>gb|CW235147.1|CW235147 104_690_11214827_148_37411_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214827, DNA
sequence
Length = 651
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 149 tggagcaagctgctgggcggcgtcttcttcagcttctgggtgct 192
|||||||||||||| || || || || |||||||||||||||||
Sbjct: 55 tggagcaagctgcttgggggagtgtttttcagcttctgggtgct 12
>gb|CW025732.1|CW025732 104_227_10488364_114_30506 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488364, DNA
sequence
Length = 759
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 561 ttcttttgttcttttgtttttg 582
||||||||||||||||||||||
Sbjct: 81 ttcttttgttcttttgtttttg 60
>gb|CW411352.1|CW411352 fsbb001f106h21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f106h21, DNA
sequence
Length = 750
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 561 ttcttttgttcttttgtttttg 582
||||||||||||||||||||||
Sbjct: 575 ttcttttgttcttttgtttttg 554
>gb|CF072959.1|CF072959 FE1_27_D01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_27_D01_A002 3', mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.061
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 197 cacctgtacccgttcgccaagggcctgatgggg 229
||||||||||||||| ||||| ||||||||||
Sbjct: 191 cacctgtacccgttcctcaaggccctgatgggg 223
>gb|CX608205.1|CX608205 ANR1_37_F12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_F12_A002 3', mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.061
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 197 cacctgtacccgttcgccaagggcctgatgggg 229
||||||||||||||| ||||| ||||||||||
Sbjct: 121 cacctgtacccgttcctcaaggccctgatgggg 153
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 213,261
Number of Sequences: 832831
Number of extensions: 213261
Number of successful extensions: 61745
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61697
Number of HSP's gapped (non-prelim): 42
length of query: 635
length of database: 491,359,669
effective HSP length: 19
effective length of query: 616
effective length of database: 475,535,880
effective search space: 292930102080
effective search space used: 292930102080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)