BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485944.3.1
(991 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD204264.1|CD204264 HS1_4_G09.g1_A012 Heat-shocked seedl... 882 0.0
gb|BG048834.1|BG048834 OV1_23_F04.b1_A002 Ovary 1 (OV1) Sor... 486 e-135
gb|CW196438.1|CW196438 104_620_11181167_116_36813_090 Sorgh... 381 e-104
gb|CW251456.1|CW251456 104_714_11223939_116_35066_014 Sorgh... 325 4e-087
gb|CD206268.1|CD206268 HS1_21_G09.g1_A012 Heat-shocked seed... 297 1e-078
gb|CW489965.1|CW489965 fsbb001f275c23k0 Sorghum methylation... 289 2e-076
gb|CW196439.1|CW196439 104_620_11181167_148_36814_090 Sorgh... 172 4e-041
gb|CW304662.1|CW304662 104_789_11465901_116_35703_085 Sorgh... 145 9e-033
gb|CL164374.1|CL164374 104_358_10807864_116_31815_232 Sorgh... 143 4e-032
gb|CW251457.1|CW251457 104_714_11223939_148_35070_014 Sorgh... 143 4e-032
gb|CW348225.1|CW348225 fsbb001f008h21f0 Sorghum methylation... 143 4e-032
gb|CW282527.1|CW282527 104_758_11408758_116_35466_085 Sorgh... 137 2e-030
gb|CD206169.1|CD206169 HS1_21_G09.b1_A012 Heat-shocked seed... 135 9e-030
gb|CW129003.1|CW129003 104_510_11114323_148_34752_066 Sorgh... 54 3e-005
gb|CW332163.1|CW332163 104_829_11481280_148_36029_052 Sorgh... 54 3e-005
gb|CW223843.1|CW223843 104_659_11203133_148_37190_017 Sorgh... 48 0.002
gb|CW242748.1|CW242748 104_702_11219510_148_37565_055 Sorgh... 48 0.002
gb|CW134130.1|CW134130 104_518_11117143_116_34820_028 Sorgh... 40 0.38
>gb|CD204264.1|CD204264 HS1_4_G09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_G09_A012 5', mRNA sequence
Length = 663
Score = 882 bits (445), Expect = 0.0
Identities = 565/605 (93%)
Strand = Plus / Plus
Query: 273 acagcctgcttgccgcgcttgcattgaggggagttcggggagcggccggtgcggaaggaa 332
|||||||||||||| ||||||||| |||| ||||||||||| || |||||||||||||||
Sbjct: 59 acagcctgcttgccacgcttgcatcgaggagagttcggggaccgcccggtgcggaaggaa 118
Query: 333 tcgacacagagttcagttcacatggctgctgaatcagagaacggcaactgcaaagcttgg 392
||||| ||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||
Sbjct: 119 tcgacgcagggttcagttcaaatggctgctgaatcagagcacggcaactgcaatgcttgg 178
Query: 393 gcagcgagagatccttctggagttctctcaccacacagttttaaccgcagagcagtgcaa 452
|||||||||||||| |||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 179 gcagcgagagatccctctggagttctctcaccatacagctttaaccgcagaccagtgcaa 238
Query: 453 agcggcgatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttgg 512
||| |||||||| || |||||||| ||||||| |||||||||||||| ||||||| |||
Sbjct: 239 agcagcgatgttgcgttgaagatcttatactgaggagtctgttatgctgacgttgtctgg 298
Query: 513 acgcggaataagctcaatgattcaaaatatcctttggttcctgggcatgagatagctgga 572
|| ||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 299 acacggaatatgcaccatgattcaaaatatcctgtggttcctgggcatgagatagctgga 358
Query: 573 gttgtaactcaggttggtgcagatgtcaaaggctttaaagtgggtgaccatgtaggtgtt 632
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gtcgtaactcaggttggtgcagatgtcaaaggctttaaagtgggtgaccatgtaggtgtt 418
Query: 633 ggaacatatgtgaactcttgccgtgattgtgagaactgcaatatctctctagacaaccat 692
||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 419 ggaacttatgtgaactcatgccgagattgtgagaactgcaatagctctctagagaaccac 478
Query: 693 tgcccaaaagcagtttatactttcaatggcattgatacagatggaactgtcacaaagggg 752
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgtccaaaaggagtttatactttcaatggcattgatacagatggaactgtcacaaagggg 538
Query: 753 ggttactccactcacattgtagtccatgaaaggtattgcttcaaaatacccgatggctac 812
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 539 ggttactccactcacattgtagtccatgaaaggtattgcttccaaatacctgatggctat 598
Query: 813 cctttggcgaaggcagcacctcttctgtgtgctggaataaccgtgtatactccaatgatg 872
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 599 cctttggcgaaggcagcacctcttctgtgtgctggaataactgtgtatactccaatgatg 658
Query: 873 cgaca 877
|||||
Sbjct: 659 cgaca 663
>gb|BG048834.1|BG048834 OV1_23_F04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 327
Score = 486 bits (245), Expect = e-135
Identities = 305/325 (93%)
Strand = Plus / Plus
Query: 457 gcgatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgc 516
|||||||| || |||||||| |||||||||||||||||||||| ||||||| ||||| |
Sbjct: 3 gcgatgttgcgttgaagatcttatactgtggagtctgttatgctgacgttgtctggacac 62
Query: 517 ggaataagctcaatgattcaaaatatcctttggttcctgggcatgagatagctggagttg 576
|||||| || | ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 63 ggaatatgcaccatgattcaaaatatcctgtggttcctgggcatgagatagctggagtcg 122
Query: 577 taactcaggttggtgcagatgtcaaaggctttaaagtgggtgaccatgtaggtgttggaa 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 taactcaggttggtgcagatgtcaaaggctttaaagtgggtgaccatgtaggtgttggaa 182
Query: 637 catatgtgaactcttgccgtgattgtgagaactgcaatatctctctagacaaccattgcc 696
| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||| || |
Sbjct: 183 cttatgtgaactcatgccgagattgtgagaactgcaatagctctctagagaaccactgtc 242
Query: 697 caaaagcagtttatactttcaatggcattgatacagatggaactgtcacaaaggggggtt 756
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 caaaaggagtttatactttcaatggcattgatacagatggaactgtcacaaaggggggtt 302
Query: 757 actccactcacattgtagtccatga 781
|||||||||||||||||||||||||
Sbjct: 303 actccactcacattgtagtccatga 327
>gb|CW196438.1|CW196438 104_620_11181167_116_36813_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181167, DNA
sequence
Length = 677
Score = 381 bits (192), Expect = e-104
Identities = 222/232 (95%)
Strand = Plus / Minus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 282 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaagcctttaaagtgg 223
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 222 gtgaccatgtaggtgttggaacatatgtgaactcatgccgagattgtgagaactgcaata 163
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||||| |||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 162 gctctctagagaaccactgcccagaaagagtttttactttcaatggcattgatacagatg 103
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggta 787
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggta 51
Score = 178 bits (90), Expect = 6e-043
Identities = 111/118 (94%)
Strand = Plus / Minus
Query: 440 cagagcagtgcaaagcggcgatgtttcgctgaagatcatatactgtggagtctgttatgc 499
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 480 cagagcagtgcaaagcagcgatgttgcgctgaagatcatatactgtggagtctgttatgc 421
Query: 500 agacgttgcttggacgcggaataagctcaatgattcaaaatatcctttggttcctggg 557
||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 420 tgacgttggttggacacggaacatgctcaatgattcaaaatatcctttggttcctggg 363
>gb|CW251456.1|CW251456 104_714_11223939_116_35066_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223939, DNA
sequence
Length = 749
Score = 325 bits (164), Expect = 4e-087
Identities = 212/228 (92%)
Strand = Plus / Minus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 300 ggcatgagattgctggagttgtaactcaggttggtgcagatgtcaaaggatttaaagtgg 241
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 240 gtgaccatgctggtgttggaacatatgtgaactcatgccgagattgtgagaactgtaata 181
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 180 gctctctagagaaccactgcccaaaaggtgtttatactttcaatggcattgatacacatg 121
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaa 783
|||||||||||| || |||||||||||| |||||||||||||||||||
Sbjct: 120 gaactgtcacaatggagggttactccacgcacattgtagtccatgaaa 73
Score = 119 bits (60), Expect = 5e-025
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 470 gaagatcatatactgtggagtctgttatgcagacgttgcttggacgcggaataagctcaa 529
|||| ||||||||||| ||||||||||||| ||||||| ||||| ||||||| ||||||
Sbjct: 481 gaaggtcatatactgtagagtctgttatgctgacgttggctggacacggaatatgctcaa 422
Query: 530 tgattcaaaatatcctttggttcctggg 557
||||||||||||||||||||||||||||
Sbjct: 421 tgattcaaaatatcctttggttcctggg 394
>gb|CD206268.1|CD206268 HS1_21_G09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_G09_A012 5', mRNA sequence
Length = 600
Score = 297 bits (150), Expect = 1e-078
Identities = 218/241 (90%)
Strand = Plus / Plus
Query: 342 agttcagttcacatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgaga 401
|||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 360 agttcagttcgaatggccgctgaatcagagaacggcaactgcaatgcatgggcagcgaga 419
Query: 402 gatccttctggagttctctcaccacacagttttaaccgcagagcagtgcaaagcggcgat 461
|||||||| ||||||||||||||| ||| |||||||||||||||||||| ||| |||||
Sbjct: 420 gatccttccggagttctctcaccatacacgtttaaccgcagagcagtgcanagcagcgat 479
Query: 462 gtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcggaat 521
||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct: 480 gttgcgctgaagatcatatactgtggagtctgttatgctgacgttaaatggacacggaat 539
Query: 522 aagctcaatgattcaaaatatcctttggttcctgggcatgagatagctggagttgtaact 581
| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 540 atgcagcatgattcaaaatatcctctggttccagggcatgagatagctggagttgtaact 599
Query: 582 c 582
|
Sbjct: 600 c 600
Score = 89.7 bits (45), Expect = 5e-016
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 273 acagcctgcttgccgcgcttgcattgaggggagttcggggagcggccggtgcggaaggaa 332
|||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||| ||||
Sbjct: 215 acagcctgcttgccacgcttgcatcgaggagagttcggggaccggccggtgcggacggaa 274
Query: 333 tcgac 337
|||||
Sbjct: 275 tcgac 279
>gb|CW489965.1|CW489965 fsbb001f275c23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275c23, DNA
sequence
Length = 682
Score = 289 bits (146), Expect = 2e-076
Identities = 188/202 (93%)
Strand = Plus / Plus
Query: 787 attgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgtgctg 846
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct: 99 attgcttcaaaatacccgatggctaccctttggcaaaggcagcacctcttctatgcgctg 158
Query: 847 gaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtcacttg 906
||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 159 gaataactgggtatactccaatgatgcaacacaacatgaaccaacctggaaagtcacttg 218
Query: 907 gggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcatttggtc 966
|||||||||| || ||||| || ||||||||||| ||||||||||||||||| |||||||
Sbjct: 219 gggtcattggactcggtggcctaggtcacatggcggtgaaatttggtaaagcgtttggtc 278
Query: 967 ttaaggtcacagttttcagtac 988
|||||| ||||||||| |||||
Sbjct: 279 ttaagggcacagttttgagtac 300
>gb|CW196439.1|CW196439 104_620_11181167_148_36814_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181167, DNA
sequence
Length = 730
Score = 172 bits (87), Expect = 4e-041
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 440 cagagcagtgcaaagcggcgatgtttcgctgaagatcatatactgtggagtctgttatgc 499
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 527 cagagcagtgcaaagcagcgatgttgcgctgaagatcatatactgtggagtctgttatgc 586
Query: 500 agacgttgcttggacgcggaataagctcaatgattcaaaatatcctttggttcctggg 557
||||||| |||||| ||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 587 tgacgttggttggacacggaacatgctcaatgattcnaaatatcctttggttcctggg 644
>gb|CW304662.1|CW304662 104_789_11465901_116_35703_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465901, DNA
sequence
Length = 665
Score = 145 bits (73), Expect = 9e-033
Identities = 157/185 (84%)
Strand = Plus / Plus
Query: 804 gatggctaccctttggcgaaggcagcacctcttctgtgtgctggaataaccgtgtatact 863
||||||||||||||||| ||||| | ||||| | ||||||||||| || || ||||||
Sbjct: 142 gatggctaccctttggctaaggctgggcctctgttatgtgctggaatcactgtatatact 201
Query: 864 ccaatgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggt 923
|| ||||| || |||||||||||||||||||| || |||||||| || ||||| || |||
Sbjct: 202 cccatgattcggcacaacatgaaccaacctggcaaatcacttggcgtgattggactgggt 261
Query: 924 ggtctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagttttc 983
|| |||| |||||||| ||||||||||| ||||||||||| | |||||||| ||||||
Sbjct: 262 ggattggggcacatggcagtgaaatttggaaaagcatttgggttgaaggtcaccgttttc 321
Query: 984 agtac 988
|||||
Sbjct: 322 agtac 326
>gb|CL164374.1|CL164374 104_358_10807864_116_31815_232 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807864, DNA
sequence
Length = 784
Score = 143 bits (72), Expect = 4e-032
Identities = 93/100 (93%)
Strand = Plus / Minus
Query: 343 gttcagttcacatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagag 402
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 361 gttcagttcacatggctgctgaatcagagaacggcagctgcaatgcttgggcagcgagag 302
Query: 403 atccttctggagttctctcaccacacagttttaaccgcag 442
||||||| ||| ||||||||||| ||| |||||||||||
Sbjct: 301 atccttcgggaattctctcaccatacaagtttaaccgcag 262
>gb|CW251457.1|CW251457 104_714_11223939_148_35070_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223939, DNA
sequence
Length = 674
Score = 143 bits (72), Expect = 4e-032
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 304 ggcatgagattgctggagttgtaactcaggttggtgcagatgtcaaaggatttaaagtgg 245
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaa 667
||| ||||| |||||||||||||||||||| || || | |||||||||||
Sbjct: 244 gtgtccatggtggtgttggaacatatgtgaattcatgaagagattgtgagaa 193
Score = 119 bits (60), Expect = 5e-025
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 470 gaagatcatatactgtggagtctgttatgcagacgttgcttggacgcggaataagctcaa 529
|||| ||||||||||| ||||||||||||| ||||||| ||||| ||||||| ||||||
Sbjct: 485 gaaggtcatatactgtagagtctgttatgctgacgttggctggacacggaatatgctcaa 426
Query: 530 tgattcaaaatatcctttggttcctggg 557
||||||||||||||||||||||||||||
Sbjct: 425 tgattcaaaatatcctttggttcctggg 398
>gb|CW348225.1|CW348225 fsbb001f008h21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f008h21, DNA
sequence
Length = 379
Score = 143 bits (72), Expect = 4e-032
Identities = 93/100 (93%)
Strand = Plus / Minus
Query: 343 gttcagttcacatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagag 402
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 110 gttcagttcacatggctgctgaatcagagaacggcagctgcaatgcttgggcagcgagag 51
Query: 403 atccttctggagttctctcaccacacagttttaaccgcag 442
||||||| ||| ||||||||||| ||| |||||||||||
Sbjct: 50 atccttcgggaattctctcaccatacaagtttaaccgcag 11
>gb|CW282527.1|CW282527 104_758_11408758_116_35466_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408758, DNA
sequence
Length = 334
Score = 137 bits (69), Expect = 2e-030
Identities = 156/185 (84%)
Strand = Plus / Plus
Query: 804 gatggctaccctttggcgaaggcagcacctcttctgtgtgctggaataaccgtgtatact 863
||||||||||||||||| ||||| | ||||| | ||||||||||| || || ||||||
Sbjct: 87 gatggctaccctttggctaaggctgggcctctgttatgtgctggaatcactgtatatact 146
Query: 864 ccaatgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggt 923
|| ||||| || |||||||||||||||||||| || |||||||| || ||||| || |||
Sbjct: 147 cccatgattcggcacaacatgaaccaacctggcaaatcacttggcgtgattggactgggt 206
Query: 924 ggtctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagttttc 983
|| |||| |||||||| |||||||||| ||||||||||| | |||||||| ||||||
Sbjct: 207 ggattggggcacatggcaatgaaatttggaaaagcatttgggttgaaggtcaccgttttc 266
Query: 984 agtac 988
|||||
Sbjct: 267 agtac 271
>gb|CD206169.1|CD206169 HS1_21_G09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_G09_A012 3', mRNA sequence
Length = 644
Score = 135 bits (68), Expect = 9e-030
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 897 aagtcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaa 956
|||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct: 1 aagtcacttggggtcattggactcggtggtctaggtcacatggcagtgaaatttggtaaa 60
Query: 957 gcatttggtcttaaggtcacagttttcagtac 988
||||||||||| |||||||||||||| |||||
Sbjct: 61 gcatttggtctgaaggtcacagttttgagtac 92
>gb|CW129003.1|CW129003 104_510_11114323_148_34752_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114323, DNA
sequence
Length = 579
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
||||||| |||| ||||||| ||||||||||||||||||
Sbjct: 75 aataagcacaataattcaaattatcctttggttcctggg 113
>gb|CW332163.1|CW332163 104_829_11481280_148_36029_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481280, DNA
sequence
Length = 643
Score = 54.0 bits (27), Expect = 3e-005
Identities = 97/119 (81%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 440 cagagcagtgcaaagcggcgatgtttcgctgaagatcata-tactgtggagtctgttatg 498
|||||||||||||||| | |||||||| |||||||| || | |||| |||||||||
Sbjct: 25 cagagcagtgcaaagcagagatgtttcattgaagatcgtacaattgtgaagtctgttaca 84
Query: 499 cagacgttgcttggacgcggaataagctcaatgattcaaaatatcctttggttcctggg 557
| ||| || || ||| | ||||||| |||| ||||||| ||||||||||||||||||
Sbjct: 85 ctgacattatttcgacacaaaataagcacaataattcaaattatcctttggttcctggg 143
>gb|CW223843.1|CW223843 104_659_11203133_148_37190_017 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11203133, DNA sequence
Length = 686
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 49 gaactcatggctcgcgagaggccc 72
||||||||||||||||||||||||
Sbjct: 64 gaactcatggctcgcgagaggccc 41
>gb|CW242748.1|CW242748 104_702_11219510_148_37565_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219510, DNA
sequence
Length = 681
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 49 gaactcatggctcgcgagaggccc 72
||||||||||||||||||||||||
Sbjct: 102 gaactcatggctcgcgagaggccc 79
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 85 tagccagatctgcgacgtcacggctgtcgcca 116
||||||| ||||||||||||| ||||||||||
Sbjct: 60 tagccaggtctgcgacgtcactgctgtcgcca 29
>gb|CW134130.1|CW134130 104_518_11117143_116_34820_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117143, DNA
sequence
Length = 279
Score = 40.1 bits (20), Expect = 0.38
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 840 tgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctgg 895
||||||||||| || || ||||||| ||||| | |||||||||||||||||||
Sbjct: 219 tgtgctggaatcactgtatatactcgcatgattcaggacaacatgaaccaacctgg 274
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 203,174
Number of Sequences: 832831
Number of extensions: 203174
Number of successful extensions: 55632
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55592
Number of HSP's gapped (non-prelim): 40
length of query: 991
length of database: 491,359,669
effective HSP length: 20
effective length of query: 971
effective length of database: 474,703,049
effective search space: 460936660579
effective search space used: 460936660579
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)