BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN123855.1|CN123855 RHOH1_1_D12.b1_A002 Acid- and alkali... 430 e-118
gb|CN123943.1|CN123943 RHOH1_1_D12.g1_A002 Acid- and alkali... 430 e-118
gb|CN140768.1|CN140768 OX1_46_H12.g1_A002 Oxidatively-stres... 430 e-118
gb|CD430993.1|CD430993 ETH1_6_F10.b1_A002 Ethylene-treated ... 359 4e-097
gb|CN140707.1|CN140707 OX1_46_H12.b1_A002 Oxidatively-stres... 327 2e-087
gb|BG560269.1|BG560269 RHIZ2_72_B09.b1_A003 Rhizome2 (RHIZ2... 218 1e-054
gb|CW177733.1|CW177733 104_591_11159186_116_36610_011 Sorgh... 198 9e-049
gb|CW243252.1|CW243252 104_703_11219878_148_37569_087 Sorgh... 198 9e-049
gb|CW177734.1|CW177734 104_591_11159186_148_36609_011 Sorgh... 190 2e-046
gb|CW131219.1|CW131219 104_514_11115553_148_34788_013 Sorgh... 161 2e-037
gb|CW137416.1|CW137416 104_523_11119279_148_34866_020 Sorgh... 161 2e-037
gb|CW476411.1|CW476411 fsbb001f233e09k0 Sorghum methylation... 161 2e-037
gb|CW478392.1|CW478392 fsbb001f236e04f0 Sorghum methylation... 161 2e-037
gb|CW115976.1|CW115976 104_491_11106855_148_34596_058 Sorgh... 159 8e-037
gb|CW119569.1|CW119569 104_496_11108842_148_34633_037 Sorgh... 159 8e-037
gb|CW319407.1|CW319407 104_812_11474472_116_35887_096 Sorgh... 155 1e-035
gb|CW319408.1|CW319408 104_812_11474472_148_35891_096 Sorgh... 155 1e-035
gb|CW137415.1|CW137415 104_523_11119279_116_34870_020 Sorgh... 145 1e-032
gb|CW069232.1|CW069232 104_319_10525781_5_30099 Sorghum met... 143 5e-032
gb|BG158327.1|BG158327 EM1_12_H04.b1_A002 Embryo 1 (EM1) So... 127 3e-027
gb|CW284746.1|CW284746 104_761_11409958_116_35490_083 Sorgh... 123 4e-026
gb|CW131218.1|CW131218 104_514_11115553_116_34784_013 Sorgh... 119 7e-025
gb|CW111273.1|CW111273 104_484_11104216_116_34532_056 Sorgh... 115 1e-023
gb|BF655994.1|BF655994 FM1_42_F02.b1_A003 Floral-Induced Me... 96 1e-017
gb|CW476410.1|CW476410 fsbb001f233e09f0 Sorghum methylation... 90 6e-016
gb|CW163093.1|CW163093 104_570_11151283_116_36445_070 Sorgh... 88 2e-015
gb|CW429387.1|CW429387 fsbb001f142j21k0 Sorghum methylation... 88 2e-015
gb|CW433996.1|CW433996 fsbb001f149h18k0 Sorghum methylation... 88 2e-015
gb|CW458828.1|CW458828 fsbb001f205e19f0 Sorghum methylation... 88 2e-015
gb|CW481408.1|CW481408 fsbb001f240p09k0 Sorghum methylation... 88 2e-015
gb|BZ334682.1|BZ334682 hx80h06.g1 WGS-SbicolorF (JM107 adap... 74 4e-011
gb|CW056974.1|CW056974 104_298_10517969_115_30157 Sorghum m... 74 4e-011
gb|CW101251.1|CW101251 104_469_11004541_116_34404_063 Sorgh... 74 4e-011
gb|CW163094.1|CW163094 104_570_11151283_148_36446_070 Sorgh... 74 4e-011
gb|CW429386.1|CW429386 fsbb001f142j21f0 Sorghum methylation... 74 4e-011
gb|CD463532.1|CD463532 ETH1_45_D12.b1_A002 Ethylene-treated... 72 1e-010
gb|CW036224.1|CW036224 104_267_10503634_115_30375 Sorghum m... 70 6e-010
gb|CF481278.1|CF481278 POL1_71_B09.b1_A002 Pollen Sorghum b... 70 6e-010
gb|CF486168.1|CF486168 POL1_36_D06.b1_A002 Pollen Sorghum b... 70 6e-010
gb|CL197703.1|CL197703 104_424_10943914_114_32334_033 Sorgh... 64 4e-008
gb|CW082645.1|CW082645 104_424_10943914_114_32383_033 Sorgh... 64 4e-008
gb|CW198874.1|CW198874 104_623_11183207_116_36840_084 Sorgh... 64 4e-008
gb|CF483095.1|CF483095 POL1_11_F04.b1_A002 Pollen Sorghum b... 64 4e-008
gb|CN146978.1|CN146978 WOUND1_46_C04.b1_A002 Wounded leaves... 64 4e-008
gb|CN147029.1|CN147029 WOUND1_46_C04.g1_A002 Wounded leaves... 64 4e-008
gb|BZ629043.1|BZ629043 ih63h03.g1 WGS-SbicolorF (DH5a methy... 62 1e-007
gb|CL196419.1|CL196419 104_422_10943045_114_32345_021 Sorgh... 62 1e-007
gb|CW082012.1|CW082012 104_422_10943045_114_32316_021 Sorgh... 62 1e-007
gb|BG559683.1|BG559683 RHIZ2_72_B09.g1_A003 Rhizome2 (RHIZ2... 58 2e-006
gb|CW427240.1|CW427240 fsbb001f139c03k0 Sorghum methylation... 54 3e-005
gb|CW090160.1|CW090160 104_435_10949122_114_32597_033 Sorgh... 52 1e-004
gb|CW090161.1|CW090161 104_435_10949122_116_32599_033 Sorgh... 52 1e-004
gb|CW198875.1|CW198875 104_623_11183207_148_36841_084 Sorgh... 52 1e-004
gb|CW267399.1|CW267399 104_737_11400713_116_35291_069 Sorgh... 52 1e-004
gb|CW188122.1|CW188122 104_607_11172854_116_36728_051 Sorgh... 50 5e-004
gb|BZ336639.1|BZ336639 hz38b06.b1 WGS-SbicolorF (JM107 adap... 48 0.002
gb|CL189083.1|CL189083 104_406_10902044_114_32470_080 Sorgh... 48 0.002
gb|CW335788.1|CW335788 104_834_11483235_116_36082_002 Sorgh... 48 0.002
gb|CW454980.1|CW454980 fsbb001f199k18f0 Sorghum methylation... 48 0.002
gb|CW455598.1|CW455598 fsbb001f200i20f0 Sorghum methylation... 48 0.002
gb|CL164384.1|CL164384 104_358_10807870_116_31815_238 Sorgh... 46 0.008
gb|CW167770.1|CW167770 104_577_11153779_116_36491_078 Sorgh... 46 0.008
gb|CW251362.1|CW251362 104_714_11223891_116_35066_016 Sorgh... 46 0.008
gb|CW287322.1|CW287322 104_765_11411355_116_35523_010 Sorgh... 46 0.008
gb|CW287323.1|CW287323 104_765_11411355_148_35527_010 Sorgh... 46 0.008
gb|CW429751.1|CW429751 fsbb001f143c15f0 Sorghum methylation... 46 0.008
gb|CW464299.1|CW464299 fsbb001f213h11f0 Sorghum methylation... 46 0.008
gb|CW476981.1|CW476981 fsbb001f234b14f0 Sorghum methylation... 46 0.008
gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster 46 0.008
gb|CW361886.1|CW361886 fsbb001f030l02f0 Sorghum methylation... 44 0.033
gb|CW361887.1|CW361887 fsbb001f030l02k0 Sorghum methylation... 44 0.033
gb|CW430553.1|CW430553 fsbb001f144f04k0 Sorghum methylation... 44 0.033
gb|CD463650.1|CD463650 ETH1_45_D12.g1_A002 Ethylene-treated... 44 0.033
gb|BZ334982.1|BZ334982 hx94g04.b1 WGS-SbicolorF (JM107 adap... 42 0.13
gb|CC059713.1|CC059713 ii26g02.b1 WGS-SbicolorF (DH5a methy... 42 0.13
gb|CW111029.1|CW111029 104_484_11104072_116_34532_062 Sorgh... 42 0.13
gb|CW213582.1|CW213582 104_645_11191629_148_37039_093 Sorgh... 42 0.13
gb|CW341483.1|CW341483 104_843_11486360_148_36159_032 Sorgh... 42 0.13
gb|CW352947.1|CW352947 fsbb001f015h14k0 Sorghum methylation... 42 0.13
gb|CW400083.1|CW400083 fsbb001f090d17k0 Sorghum methylation... 42 0.13
>gb|CN123855.1|CN123855 RHOH1_1_D12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D12_A002 3', mRNA sequence
Length = 695
Score = 430 bits (217), Expect = e-118
Identities = 238/245 (97%)
Strand = Plus / Plus
Query: 432 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 491
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 142 ggatgtggcagtgaacctgatcatcacagactactgcatgcccggcatgacaggatatga 201
Query: 492 cctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtc 551
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 202 cctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccagtggtgatcatgtc 261
Query: 552 ctctgagaacattccttcaaggatcaataggtgcctggaggaaggagctgacgagttctt 611
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 262 ctctgagaacattccttcaaggatcaataggtgcctggaggaaggagctgatgagttttt 321
Query: 612 cctaaaacctgtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcag 671
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctaaaaccagtacggctatcagacatgaacaagctcaagccccacatactgaaaagcag 381
Query: 672 atgca 676
|||||
Sbjct: 382 atgca 386
Score = 202 bits (102), Expect = 6e-050
Identities = 140/152 (92%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 271 ctcccggacaggaagctcatcgagaggctcctcaagacctcttccttccaagtgaccact 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctcccggacaggaagctcatcgagaggctcctcaagacctcttccttccaagtgaccact 61
Query: 331 gtcgactccgggagcaaggcgctgcagttcctgggcctccatgaccaggacagcacggtt 390
|||||||| |||||||||||||||||||||||||| ||||||||| | ||||| | ||
Sbjct: 62 gtcgactcagggagcaaggcgctgcagttcctgggactccatgacgaccacagccctgt- 120
Query: 391 cctcctgtccacacgcaccagctggatgtggc 422
|||||||||||| ||||||||||||||||
Sbjct: 121 --tcctgtccacacagaccagctggatgtggc 150
Score = 111 bits (56), Expect = 2e-022
Identities = 103/118 (87%), Gaps = 3/118 (2%)
Strand = Plus / Plus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaagggtgcaggcaccgaagaaatctt 794
||||||||||| ||||| | |||||||||||||||||| |||| || ||||||||||||
Sbjct: 463 cagcagcagcggtagcagcagcaaccgcaagagaaagggagcagacaacgaagaaatctt 522
Query: 795 gccccagctggcaaacagatcaaggcacagttaactgagaactgactagtacagctaa 852
|||||| |||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 523 gcccca---ggcaaacagatcaaggcatagttagctgcaaactgactagtaccgctaa 577
Score = 109 bits (55), Expect = 7e-022
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 83 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 142 ggatgtggcagtgaacctgatcatcacagactactgcatgcccggcatgacaggatatga 201
Query: 143 cct 145
|||
Sbjct: 202 cct 204
Score = 54.0 bits (27), Expect = 3e-005
Identities = 62/73 (84%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 1 cgctgcagttcctgggcctccatgaccaggacagcacggttcctcctgtccacacgcacc 60
|||||||||||||||| ||||||||| | ||||| | || |||||||||||| |||
Sbjct: 81 cgctgcagttcctgggactccatgacgaccacagccctgt---tcctgtccacacagacc 137
Query: 61 agctggatgtggc 73
|||||||||||||
Sbjct: 138 agctggatgtggc 150
Score = 52.0 bits (26), Expect = 1e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 875 tttggcttactgatttgtaacgtagatgttagccctggatttgcaaaacggaacggaatc 934
|||||| ||||||||| |||| ||||| ||||| || ||||||||||| || ||||||
Sbjct: 627 tttggcctactgatttataacatagatattagcactagatttgcaaaatataatggaatc 686
Query: 935 tgtaaa 940
||||||
Sbjct: 687 tgtaaa 692
>gb|CN123943.1|CN123943 RHOH1_1_D12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D12_A002 5', mRNA sequence
Length = 721
Score = 430 bits (217), Expect = e-118
Identities = 238/245 (97%)
Strand = Plus / Plus
Query: 432 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 491
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 359 ggatgtggcagtgaacctgatcatcacagactactgcatgcccggcatgacaggatatga 418
Query: 492 cctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtc 551
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 419 cctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccagtggtgatcatgtc 478
Query: 552 ctctgagaacattccttcaaggatcaataggtgcctggaggaaggagctgacgagttctt 611
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 479 ctctgagaacattccttcaaggatcaataggtgcctggaggaaggagctgatgagttttt 538
Query: 612 cctaaaacctgtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcag 671
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cctaaaaccagtacggctatcagacatgaacaagctcaagccccacatactgaaaagcag 598
Query: 672 atgca 676
|||||
Sbjct: 599 atgca 603
Score = 297 bits (150), Expect = 1e-078
Identities = 191/204 (93%), Gaps = 3/204 (1%)
Strand = Plus / Plus
Query: 219 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagcctcccgga 278
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 167 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagtctcccgga 226
Query: 279 caggaagctcatcgagaggctcctcaagacctcttccttccaagtgaccactgtcgactc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 caggaagctcatcgagaggctcctcaagacctcttccttccaagtgaccactgtcgactc 286
Query: 339 cgggagcaaggcgctgcagttcctgggcctccatgaccaggacagcacggttcctcctgt 398
|||||||||||||||||||||||||| ||||||||| | ||||| | || ||||||
Sbjct: 287 agggagcaaggcgctgcagttcctgggactccatgacgaccacagccctgt---tcctgt 343
Query: 399 ccacacgcaccagctggatgtggc 422
|||||| ||||||||||||||||
Sbjct: 344 ccacacagaccagctggatgtggc 367
Score = 109 bits (55), Expect = 7e-022
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 83 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 359 ggatgtggcagtgaacctgatcatcacagactactgcatgcccggcatgacaggatatga 418
Query: 143 cct 145
|||
Sbjct: 419 cct 421
Score = 54.0 bits (27), Expect = 3e-005
Identities = 62/73 (84%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 1 cgctgcagttcctgggcctccatgaccaggacagcacggttcctcctgtccacacgcacc 60
|||||||||||||||| ||||||||| | ||||| | || |||||||||||| |||
Sbjct: 298 cgctgcagttcctgggactccatgacgaccacagccctgt---tcctgtccacacagacc 354
Query: 61 agctggatgtggc 73
|||||||||||||
Sbjct: 355 agctggatgtggc 367
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 677 accaggaacagcaccagcaaagtgacag 704
|||||||||||| |||||||||||||||
Sbjct: 616 accaggaacagctccagcaaagtgacag 643
Score = 46.1 bits (23), Expect = 0.008
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaaggg 773
||||||||||| ||||| | ||||||||||||||||||
Sbjct: 680 cagcagcagcggtagcagcagcaaccgcaagagaaaggg 718
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 201 cttgtttcgatcggtcatggcggcgg 226
|||||||||||||| |||||||||||
Sbjct: 134 cttgtttcgatcggccatggcggcgg 159
>gb|CN140768.1|CN140768 OX1_46_H12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_H12_A002 5', mRNA sequence
Length = 708
Score = 430 bits (217), Expect = e-118
Identities = 238/245 (97%)
Strand = Plus / Plus
Query: 432 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 491
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 311 ggatgtggcagtgaacctgatcatcacagactactgcatgcccggcatgacaggatatga 370
Query: 492 cctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtc 551
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 371 cctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccagtggtgatcatgtc 430
Query: 552 ctctgagaacattccttcaaggatcaataggtgcctggaggaaggagctgacgagttctt 611
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 431 ctctgagaacattccttcaaggatcaataggtgcctggaggaaggagctgatgagttttt 490
Query: 612 cctaaaacctgtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcag 671
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cctaaaaccagtacggctatcagacatgaacaagctcaagccccacatactgaaaagcag 550
Query: 672 atgca 676
|||||
Sbjct: 551 atgca 555
Score = 297 bits (150), Expect = 1e-078
Identities = 191/204 (93%), Gaps = 3/204 (1%)
Strand = Plus / Plus
Query: 219 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagcctcccgga 278
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 119 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagtctcccgga 178
Query: 279 caggaagctcatcgagaggctcctcaagacctcttccttccaagtgaccactgtcgactc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 caggaagctcatcgagaggctcctcaagacctcttccttccaagtgaccactgtcgactc 238
Query: 339 cgggagcaaggcgctgcagttcctgggcctccatgaccaggacagcacggttcctcctgt 398
|||||||||||||||||||||||||| ||||||||| | ||||| | || ||||||
Sbjct: 239 agggagcaaggcgctgcagttcctgggactccatgacgaccacagccctgt---tcctgt 295
Query: 399 ccacacgcaccagctggatgtggc 422
|||||| ||||||||||||||||
Sbjct: 296 ccacacagaccagctggatgtggc 319
Score = 109 bits (55), Expect = 7e-022
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 83 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 311 ggatgtggcagtgaacctgatcatcacagactactgcatgcccggcatgacaggatatga 370
Query: 143 cct 145
|||
Sbjct: 371 cct 373
Score = 77.8 bits (39), Expect = 2e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaagggtgcaggcaccgaagaaatctt 794
||||||||||| ||||| | |||||||||||||||||| |||| || ||||||||||||
Sbjct: 632 cagcagcagcggtagcagcagcaaccgcaagagaaagggagcagacaacgaagaaatctt 691
Query: 795 gccccag 801
|||||||
Sbjct: 692 gccccag 698
Score = 54.0 bits (27), Expect = 3e-005
Identities = 62/73 (84%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 1 cgctgcagttcctgggcctccatgaccaggacagcacggttcctcctgtccacacgcacc 60
|||||||||||||||| ||||||||| | ||||| | || |||||||||||| |||
Sbjct: 250 cgctgcagttcctgggactccatgacgaccacagccctgt---tcctgtccacacagacc 306
Query: 61 agctggatgtggc 73
|||||||||||||
Sbjct: 307 agctggatgtggc 319
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 201 cttgtttcgatcggtcatggcggcgg 226
|||||||||||||| |||||||||||
Sbjct: 86 cttgtttcgatcggccatggcggcgg 111
>gb|CD430993.1|CD430993 ETH1_6_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_F10_A002 3', mRNA sequence
Length = 713
Score = 359 bits (181), Expect = 4e-097
Identities = 229/245 (93%)
Strand = Plus / Plus
Query: 432 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 491
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 96 ggatgtggcggtgaacctgatcatcacggactactgcatgcccggcatgacagggtatga 155
Query: 492 cctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtc 551
||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 156 tctgctaaagaagatcaaggaatcgtcgtctcttagagatatcccggtcgtgatcatgtc 215
Query: 552 ctctgagaacattccttcaaggatcaataggtgcctggaggaaggagctgacgagttctt 611
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct: 216 gtctgagaacatcccttcaaggatcaatagatgcctggaggaaggagcggacgagttttt 275
Query: 612 cctaaaacctgtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcag 671
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 276 cctaaaaccagtgcggctatcagacatgagcaagctcaagccccacatactgaaaagcag 335
Query: 672 atgca 676
|||||
Sbjct: 336 atgca 340
Score = 87.7 bits (44), Expect = 2e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 83 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 96 ggatgtggcggtgaacctgatcatcacggactactgcatgcccggcatgacagggtatga 155
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 319 caagtgaccactgtcgactccgggagcaaggcgctgcagttcctggg 365
||||| ||||||||||| ||||||||||| || ||||||||| ||||
Sbjct: 1 caagtaaccactgtcgattccgggagcaaagccctgcagttcttggg 47
Score = 42.1 bits (21), Expect = 0.13
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 874 ctttggcttactgatttgtaacgtagatgttagccctggatttgcaaaa 922
||||||| |||||||||||||| ||||||| ||| |||||||||||
Sbjct: 581 ctttggcctactgatttgtaacacagatgtttgccactgatttgcaaaa 629
>gb|CN140707.1|CN140707 OX1_46_H12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_H12_A002 3', mRNA sequence
Length = 541
Score = 327 bits (165), Expect = 2e-087
Identities = 198/209 (94%)
Strand = Plus / Plus
Query: 468 catgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcag 527
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 catgcccggcatgacaggatatgccctgctcaagaagatcaaggagtcgtcgtctctcag 60
Query: 528 agatatcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtgcct 587
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agatatcccagtggtgatcatgtcctctgagaacattccttcaaggatcaataggtgcct 120
Query: 588 ggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaacaagct 647
||||||||||||||| ||||| ||| ||||||| || |||| |||||||||||||||||
Sbjct: 121 ggaggaaggagctgatgagtttttcttaaaaccagtagggctttcagacatgaacaagct 180
Query: 648 caagccccacatactgaaaagcagatgca 676
||||||||||||| |||||||||||||||
Sbjct: 181 caagccccacatattgaaaagcagatgca 209
Score = 111 bits (56), Expect = 2e-022
Identities = 103/118 (87%), Gaps = 3/118 (2%)
Strand = Plus / Plus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaagggtgcaggcaccgaagaaatctt 794
||||||||||| ||||| | |||||||||||||||||| |||| || ||||||||||||
Sbjct: 286 cagcagcagcggtagcagcagcaaccgcaagagaaagggagcagacatcgaagaaatctt 345
Query: 795 gccccagctggcaaacagatcaaggcacagttaactgagaactgactagtacagctaa 852
|||||| |||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 346 gcccca---ggcaaacagatcaaggcatagttagctgcaaactgactagtaccgctaa 400
Score = 56.0 bits (28), Expect = 9e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 875 tttggcttactgatttgtaacgtagatgttagccctggatttgcaaaacggaacggaatc 934
|||||| ||||||||| |||| ||||| ||||| || ||||||||||| || ||||
Sbjct: 450 tttggcctactgatttataacatagatattagcactagatttgcaaaatataatggaaca 509
Query: 935 tgtaaactgatactgcttgagtcgaatc 962
|||||| ||||||||||||||| ||||
Sbjct: 510 tgtaaaaggatactgcttgagtcaaatc 537
>gb|BG560269.1|BG560269 RHIZ2_72_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 552
Score = 218 bits (110), Expect = 1e-054
Identities = 140/150 (93%)
Strand = Plus / Plus
Query: 216 catggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagcctccc 275
|||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 198 catggcggtggtggccaccgagacgccgttccatgtcctggccgtggacgacagcctccc 257
Query: 276 ggacaggaagctcatcgagaggctcctcaagacctcttccttccaagtgaccactgtcga 335
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 258 tgacaggaagctcatcgagaggctcctcaagacctcttccttccaagtaaccactgtcga 317
Query: 336 ctccgggagcaaggcgctgcagttcctggg 365
||||||||||| || ||||||||| ||||
Sbjct: 318 ttccgggagcaaagccctgcagttcttggg 347
Score = 180 bits (91), Expect = 2e-043
Identities = 138/153 (90%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 432 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 491
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 396 ggatgtggcggtgaacctgatcatcacggactactgcatgcccggcatgacagggtatga 455
Query: 492 cctgctcaagaagatca---aggagtcgtcgtctctcagagatatcccggtggtgatcat 548
||||| |||||||||| |||| || |||||||| |||||||||||||| ||||||||
Sbjct: 456 tctgctaaagaagatcaagcaggaatcatcgtctcttagagatatcccggtcgtgatcat 515
Query: 549 gtcctctgagaacattccttcaaggatcaatag 581
||| ||||||||||| |||||||||||||||||
Sbjct: 516 gtcgtctgagaacatcccttcaaggatcaatag 548
Score = 87.7 bits (44), Expect = 2e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 83 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 396 ggatgtggcggtgaacctgatcatcacggactactgcatgcccggcatgacagggtatga 455
>gb|CW177733.1|CW177733 104_591_11159186_116_36610_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159186, DNA
sequence
Length = 696
Score = 198 bits (100), Expect = 9e-049
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 219 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagcctcccgga 278
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 392 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagtctcccgga 451
Query: 279 caggaagctcatcgagaggctcctcaagacctcttccttccaag 322
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caggaagctcatcgagaggctcctcaagacctcttccttccaag 495
Score = 93.7 bits (47), Expect = 4e-017
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctgcagttcctgggcctccatgac 375
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 603 agtgaccactgtcgactcagggagcaaggcgctgcagttcctgggactccatgac 657
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 cgctgcagttcctgggcctccatgac 26
|||||||||||||||| |||||||||
Sbjct: 632 cgctgcagttcctgggactccatgac 657
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 201 cttgtttcgatcggtcatggcggcgg 226
|||||||||||||| |||||||||||
Sbjct: 359 cttgtttcgatcggccatggcggcgg 384
>gb|CW243252.1|CW243252 104_703_11219878_148_37569_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219878, DNA
sequence
Length = 663
Score = 198 bits (100), Expect = 9e-049
Identities = 103/104 (99%)
Strand = Plus / Minus
Query: 219 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagcctcccgga 278
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 488 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagtctcccgga 429
Query: 279 caggaagctcatcgagaggctcctcaagacctcttccttccaag 322
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caggaagctcatcgagaggctcctcaagacctcttccttccaag 385
Score = 125 bits (63), Expect = 1e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 67 atgtggctgccaatcaggatgtggctgtgaacctgatcatcacagactactgcatgcctg 126
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 79 atgtggatgacaatcaggatgtggcagtgaacctgatcatcacagactactgcatgcccg 20
Query: 127 gcatgacaggatatgacct 145
|||||||||||||||||||
Sbjct: 19 gcatgacaggatatgacct 1
Score = 125 bits (63), Expect = 1e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 416 atgtggctgccaatcaggatgtggctgtgaacctgatcatcacagactactgcatgcctg 475
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 79 atgtggatgacaatcaggatgtggcagtgaacctgatcatcacagactactgcatgcccg 20
Query: 476 gcatgacaggatatgacct 494
|||||||||||||||||||
Sbjct: 19 gcatgacaggatatgacct 1
Score = 93.7 bits (47), Expect = 4e-017
Identities = 53/55 (96%)
Strand = Plus / Minus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctgcagttcctgggcctccatgac 375
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 277 agtgaccactgtcgactcagggagcaaggcgctgcagttcctgggactccatgac 223
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 201 cttgtttcgatcggtcatggcggcgg 226
|||||||||||||| |||||||||||
Sbjct: 521 cttgtttcgatcggccatggcggcgg 496
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 cgctgcagttcctgggcctccatgac 26
|||||||||||||||| |||||||||
Sbjct: 248 cgctgcagttcctgggactccatgac 223
>gb|CW177734.1|CW177734 104_591_11159186_148_36609_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159186, DNA
sequence
Length = 602
Score = 190 bits (96), Expect = 2e-046
Identities = 102/104 (98%)
Strand = Plus / Minus
Query: 219 ggcggcggtggccacagagactccgttccatgtcctggcggtggacgacagcctcccgga 278
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 546 ggcggcggtgaccacagagactccgttccatgtcctggcggtggacgacagtctcccgga 487
Query: 279 caggaagctcatcgagaggctcctcaagacctcttccttccaag 322
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caggaagctcatcgagaggctcctcaagacctcttccttccaag 443
Score = 159 bits (80), Expect = 8e-037
Identities = 92/96 (95%)
Strand = Plus / Minus
Query: 416 atgtggctgccaatcaggatgtggctgtgaacctgatcatcacagactactgcatgcctg 475
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 137 atgtggatgacaatcaggatgtggcagtgaacctgatcatcacagactactgcatgcccg 78
Query: 476 gcatgacaggatatgacctgctcaagaagatcaagg 511
||||||||||||||||||||||||||||||||||||
Sbjct: 77 gcatgacaggatatgacctgctcaagaagatcaagg 42
Score = 125 bits (63), Expect = 1e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 67 atgtggctgccaatcaggatgtggctgtgaacctgatcatcacagactactgcatgcctg 126
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 137 atgtggatgacaatcaggatgtggcagtgaacctgatcatcacagactactgcatgcccg 78
Query: 127 gcatgacaggatatgacct 145
|||||||||||||||||||
Sbjct: 77 gcatgacaggatatgacct 59
Score = 93.7 bits (47), Expect = 4e-017
Identities = 53/55 (96%)
Strand = Plus / Minus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctgcagttcctgggcctccatgac 375
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 335 agtgaccactgtcgactcagggagcaaggcgctgcagttcctgggactccatgac 281
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 201 cttgtttcgatcggtcatggcggcgg 226
|||||||||||||| |||||||||||
Sbjct: 579 cttgtttcgatcggccatggcggcgg 554
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 cgctgcagttcctgggcctccatgac 26
|||||||||||||||| |||||||||
Sbjct: 306 cgctgcagttcctgggactccatgac 281
>gb|CW131219.1|CW131219 104_514_11115553_148_34788_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115553, DNA
sequence
Length = 669
Score = 161 bits (81), Expect = 2e-037
Identities = 93/97 (95%)
Strand = Plus / Minus
Query: 580 aggtgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatg 639
||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 397 aggtgcctggaggaaggagctgatgagtttttcctaaaaccagtacggctatcagacatg 338
Query: 640 aacaagctcaagccccacatactgaaaagcagatgca 676
|||||||||||||||||||||||||||||||||||||
Sbjct: 337 aacaagctcaagccccacatactgaaaagcagatgca 301
Score = 111 bits (56), Expect = 2e-022
Identities = 103/118 (87%), Gaps = 3/118 (2%)
Strand = Plus / Minus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaagggtgcaggcaccgaagaaatctt 794
||||||||||| ||||| | |||||||||||||||||| |||| || ||||||||||||
Sbjct: 224 cagcagcagcggtagcagcagcaaccgcaagagaaagggagcagacaacgaagaaatctt 165
Query: 795 gccccagctggcaaacagatcaaggcacagttaactgagaactgactagtacagctaa 852
|||||| |||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 164 gcccca---ggcaaacagatcaaggcatagttagctgcaaactgactagtaccgctaa 110
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 875 tttggcttactgatttgtaacgtagatgttagccctggatttgcaaaa 922
|||||| ||||||||| |||| ||||| ||||| || |||||||||||
Sbjct: 60 tttggcctactgatttataacatagatattagcactagatttgcaaaa 13
>gb|CW137416.1|CW137416 104_523_11119279_148_34866_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119279, DNA
sequence
Length = 610
Score = 161 bits (81), Expect = 2e-037
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 580 aggtgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatg 639
||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 394 aggtgcctggaggaaggagctgatgagtttttcctaaaaccagtacggctatcagacatg 453
Query: 640 aacaagctcaagccccacatactgaaaagcagatgca 676
|||||||||||||||||||||||||||||||||||||
Sbjct: 454 aacaagctcaagccccacatactgaaaagcagatgca 490
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 677 accaggaacagcaccagcaaagtgacag 704
|||||||||||| |||||||||||||||
Sbjct: 503 accaggaacagctccagcaaagtgacag 530
>gb|CW476411.1|CW476411 fsbb001f233e09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233e09, DNA
sequence
Length = 790
Score = 161 bits (81), Expect = 2e-037
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 580 aggtgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatg 639
||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 149 aggtgcctggaggaaggagctgatgagtttttcctaaaaccagtacggctatcagacatg 208
Query: 640 aacaagctcaagccccacatactgaaaagcagatgca 676
|||||||||||||||||||||||||||||||||||||
Sbjct: 209 aacaagctcaagccccacatactgaaaagcagatgca 245
Score = 111 bits (56), Expect = 2e-022
Identities = 103/118 (87%), Gaps = 3/118 (2%)
Strand = Plus / Plus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaagggtgcaggcaccgaagaaatctt 794
||||||||||| ||||| | |||||||||||||||||| |||| || ||||||||||||
Sbjct: 322 cagcagcagcggtagcagcagcaaccgcaagagaaagggagcagacaacgaagaaatctt 381
Query: 795 gccccagctggcaaacagatcaaggcacagttaactgagaactgactagtacagctaa 852
|||||| |||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 382 gcccca---ggcaaacagatcaaggcatagttagctgcaaactgactagtaccgctaa 436
Score = 73.8 bits (37), Expect = 4e-011
Identities = 103/125 (82%), Gaps = 5/125 (4%)
Strand = Plus / Plus
Query: 875 tttggcttactgatttgtaacgtagatgttagccctggatttgcaaaacggaacggaatc 934
|||||| ||||||||| |||| ||||| ||||| || ||||||||||| || ||||||
Sbjct: 486 tttggcctactgatttataacatagatattagcactagatttgcaaaatataatggaatc 545
Query: 935 tgtaaactgatactgcttgagtcgaatcgatcgaagtgattctgcaccagatctccctat 994
|||||| ||||||||||||||| |||| ||||||||||||| || || ||||| |
Sbjct: 546 tgtaaaaggatactgcttgagtcaaatc-----aagtgattctgcaacaaatttccctgt 600
Query: 995 ttcat 999
|||||
Sbjct: 601 ttcat 605
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1137 ttagcctggatacaagttgtcactacagtagtcagta 1173
|||| |||||||||||| ||||||||| ||||||||
Sbjct: 750 ttaggctggatacaagtactcactacagcagtcagta 786
>gb|CW478392.1|CW478392 fsbb001f236e04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236e04, DNA
sequence
Length = 614
Score = 161 bits (81), Expect = 2e-037
Identities = 93/97 (95%)
Strand = Plus / Minus
Query: 580 aggtgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatg 639
||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 278 aggtgcctggaggaaggagctgatgagtttttcctaaaaccagtacggctatcagacatg 219
Query: 640 aacaagctcaagccccacatactgaaaagcagatgca 676
|||||||||||||||||||||||||||||||||||||
Sbjct: 218 aacaagctcaagccccacatactgaaaagcagatgca 182
Score = 99.6 bits (50), Expect = 6e-019
Identities = 94/108 (87%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaagggtgcaggcaccgaagaaatctt 794
||||||||||| ||||| | |||||||||||||||||| |||| || ||||||||||||
Sbjct: 105 cagcagcagcggtagcagcagcaaccgcaagagaaagggagcagacaacgaagaaatctt 46
Query: 795 gccccagctggcaaacagatcaaggcacagttaactgagaactgacta 842
|||||| |||||||||||||||||| ||||| ||| |||||||||
Sbjct: 45 gcccca---ggcaaacagatcaaggcatagttagctgcaaactgacta 1
>gb|CW115976.1|CW115976 104_491_11106855_148_34596_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106855, DNA
sequence
Length = 571
Score = 159 bits (80), Expect = 8e-037
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 416 atgtggctgccaatcaggatgtggctgtgaacctgatcatcacagactactgcatgcctg 475
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 239 atgtggatgacaatcaggatgtggcagtgaacctgatcatcacagactactgcatgcccg 298
Query: 476 gcatgacaggatatgacctgctcaagaagatcaagg 511
||||||||||||||||||||||||||||||||||||
Sbjct: 299 gcatgacaggatatgacctgctcaagaagatcaagg 334
Score = 127 bits (64), Expect = 3e-027
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 473 aggagtcgtcgtctctcagagatatcccagtggtgatcatgtcctctgagaacattcctt 532
Query: 569 caaggatcaataggtg 584
||||||||||||||
Sbjct: 533 tcaggatcaataggtg 548
Score = 125 bits (63), Expect = 1e-026
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 67 atgtggctgccaatcaggatgtggctgtgaacctgatcatcacagactactgcatgcctg 126
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 239 atgtggatgacaatcaggatgtggcagtgaacctgatcatcacagactactgcatgcccg 298
Query: 127 gcatgacaggatatgacct 145
|||||||||||||||||||
Sbjct: 299 gcatgacaggatatgacct 317
Score = 93.7 bits (47), Expect = 4e-017
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctgcagttcctgggcctccatgac 375
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 41 agtgaccactgtcgactcagggagcaaggcgctgcagttcctgggactccatgac 95
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 cgctgcagttcctgggcctccatgac 26
|||||||||||||||| |||||||||
Sbjct: 70 cgctgcagttcctgggactccatgac 95
>gb|CW119569.1|CW119569 104_496_11108842_148_34633_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108842, DNA
sequence
Length = 498
Score = 159 bits (80), Expect = 8e-037
Identities = 92/96 (95%)
Strand = Plus / Minus
Query: 416 atgtggctgccaatcaggatgtggctgtgaacctgatcatcacagactactgcatgcctg 475
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 183 atgtggatgacaatcaggatgtggcagtgaacctgatcatcacagactactgcatgcccg 124
Query: 476 gcatgacaggatatgacctgctcaagaagatcaagg 511
||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcatgacaggatatgacctgctcaagaagatcaagg 88
Score = 125 bits (63), Expect = 1e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 67 atgtggctgccaatcaggatgtggctgtgaacctgatcatcacagactactgcatgcctg 126
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 183 atgtggatgacaatcaggatgtggcagtgaacctgatcatcacagactactgcatgcccg 124
Query: 127 gcatgacaggatatgacct 145
|||||||||||||||||||
Sbjct: 123 gcatgacaggatatgacct 105
Score = 93.7 bits (47), Expect = 4e-017
Identities = 53/55 (96%)
Strand = Plus / Minus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctgcagttcctgggcctccatgac 375
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 381 agtgaccactgtcgactcagggagcaaggcgctgcagttcctgggactccatgac 327
Score = 44.1 bits (22), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 cgctgcagttcctgggcctccatgac 26
|||||||||||||||| |||||||||
Sbjct: 352 cgctgcagttcctgggactccatgac 327
>gb|CW319407.1|CW319407 104_812_11474472_116_35887_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474472, DNA
sequence
Length = 589
Score = 155 bits (78), Expect = 1e-035
Identities = 90/94 (95%)
Strand = Plus / Minus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |
Sbjct: 390 tgcctggaggaaggagcggacgagtttttcctaaaaccagtgcggctatcagacatgagc 331
Query: 643 aagctcaagccccacatactgaaaagcagatgca 676
||||||||||||||||||||||||||||||||||
Sbjct: 330 aagctcaagccccacatactgaaaagcagatgca 297
Score = 42.1 bits (21), Expect = 0.13
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 874 ctttggcttactgatttgtaacgtagatgttagccctggatttgcaaaa 922
||||||| |||||||||||||| ||||||| ||| |||||||||||
Sbjct: 56 ctttggcctactgatttgtaacacagatgtttgccactgatttgcaaaa 8
>gb|CW319408.1|CW319408 104_812_11474472_148_35891_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474472, DNA
sequence
Length = 671
Score = 155 bits (78), Expect = 1e-035
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |
Sbjct: 390 tgcctggaggaaggagcggacgagtttttcctaaaaccagtgcggctatcagacatgagc 449
Query: 643 aagctcaagccccacatactgaaaagcagatgca 676
||||||||||||||||||||||||||||||||||
Sbjct: 450 aagctcaagccccacatactgaaaagcagatgca 483
>gb|CW137415.1|CW137415 104_523_11119279_116_34870_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119279, DNA
sequence
Length = 616
Score = 145 bits (73), Expect = 1e-032
Identities = 85/89 (95%)
Strand = Plus / Minus
Query: 588 ggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaacaagct 647
||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 616 ggaggaaggagctgatgagtttttcctaaaaccagtacggctatcagacatgaacaagct 557
Query: 648 caagccccacatactgaaaagcagatgca 676
|||||||||||||||||||||||||||||
Sbjct: 556 caagccccacatactgaaaagcagatgca 528
Score = 111 bits (56), Expect = 2e-022
Identities = 103/118 (87%), Gaps = 3/118 (2%)
Strand = Plus / Minus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaagggtgcaggcaccgaagaaatctt 794
||||||||||| ||||| | |||||||||||||||||| |||| || ||||||||||||
Sbjct: 451 cagcagcagcggtagcagcagcaaccgcaagagaaagggagcagacaacgaagaaatctt 392
Query: 795 gccccagctggcaaacagatcaaggcacagttaactgagaactgactagtacagctaa 852
|||||| |||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 391 gcccca---ggcaaacagatcaaggcatagttagctgcaaactgactagtaccgctaa 337
Score = 73.8 bits (37), Expect = 4e-011
Identities = 103/125 (82%), Gaps = 5/125 (4%)
Strand = Plus / Minus
Query: 875 tttggcttactgatttgtaacgtagatgttagccctggatttgcaaaacggaacggaatc 934
|||||| ||||||||| |||| ||||| ||||| || ||||||||||| || ||||||
Sbjct: 287 tttggcctactgatttataacatagatattagcactagatttgcaaaatataatggaatc 228
Query: 935 tgtaaactgatactgcttgagtcgaatcgatcgaagtgattctgcaccagatctccctat 994
|||||| ||||||||||||||| |||| ||||||||||||| || || ||||| |
Sbjct: 227 tgtaaaaggatactgcttgagtcaaatc-----aagtgattctgcaacaaatttccctgt 173
Query: 995 ttcat 999
|||||
Sbjct: 172 ttcat 168
>gb|CW069232.1|CW069232 104_319_10525781_5_30099 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525781, DNA
sequence
Length = 594
Score = 143 bits (72), Expect = 5e-032
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 475 aggagtcgtcgtctctcagagatatcccagtggtgatcatgtcctctgagaacattcctt 416
Query: 569 caaggatcaataggtg 584
||||||||||||||||
Sbjct: 415 caaggatcaataggtg 400
>gb|BG158327.1|BG158327 EM1_12_H04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 443
Score = 127 bits (64), Expect = 3e-027
Identities = 100/112 (89%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 219 gttccatgtcctcgcggtggacgacagcatcgtcgacaggaagctcatcgagatgctcct 278
Query: 303 caagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgctg 354
||||| ||| |||| |||||||||||| || || ||||||||||||||||||
Sbjct: 279 caagaactcgtcctaccaagtgaccacggtggattccgggagcaaggcgctg 330
>gb|CW284746.1|CW284746 104_761_11409958_116_35490_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409958, DNA
sequence
Length = 381
Score = 123 bits (62), Expect = 4e-026
Identities = 80/86 (93%)
Strand = Plus / Minus
Query: 591 ggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaacaagctcaa 650
||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 381 ggaaggagcggacgagtttttcctaaaaccagtgcggctatcagacatgagcaagctcaa 322
Query: 651 gccccacatactgaaaagcagatgca 676
|| ||||||||||| |||||||||||
Sbjct: 321 gcgccacatactgagaagcagatgca 296
Score = 42.1 bits (21), Expect = 0.13
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 874 ctttggcttactgatttgtaacgtagatgttagccctggatttgcaaaa 922
||||||| |||||||||||||| ||||||| ||| |||||||||||
Sbjct: 55 ctttggcctactgatttgtaacacagatgtttgccactgatttgcaaaa 7
>gb|CW131218.1|CW131218 104_514_11115553_116_34784_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115553, DNA
sequence
Length = 511
Score = 119 bits (60), Expect = 7e-025
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||
Sbjct: 87 aggagtcgtcgtctctcagatatatcccactggtgatcatgtcctctgataacattcctt 146
Query: 569 caaggatcaataggtg 584
||||||||||||||||
Sbjct: 147 caaggatcaataggtg 162
>gb|CW111273.1|CW111273 104_484_11104216_116_34532_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104216, DNA
sequence
Length = 499
Score = 115 bits (58), Expect = 1e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 430 caggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatat 489
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 169 caggatgtggcggtgaacctgatcatcacggactactgcatgcccggcatgacagggtat 110
Query: 490 gacctgctcaagaagatcaagg 511
|| ||||| |||||||||||||
Sbjct: 109 gatctgctaaagaagatcaagg 88
Score = 91.7 bits (46), Expect = 2e-016
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 81 caggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatat 140
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 169 caggatgtggcggtgaacctgatcatcacggactactgcatgcccggcatgacagggtat 110
Query: 141 ga 142
||
Sbjct: 109 ga 108
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctggg 365
||||||||||| ||||||||||| || ||||||||| ||||
Sbjct: 395 accactgtcgattccgggagcaaagccctgcagttcttggg 355
>gb|BF655994.1|BF655994 FM1_42_F02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 183
Score = 95.6 bits (48), Expect = 1e-017
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 432 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 491
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 112 ggatgtggcggtgaacctgatcatcacggactactgcatgcccggcatgacagggtatga 171
Query: 492 cctgctcaagaa 503
||||| |||||
Sbjct: 172 tctgctaaagaa 183
Score = 87.7 bits (44), Expect = 2e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 83 ggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 112 ggatgtggcggtgaacctgatcatcacggactactgcatgcccggcatgacagggtatga 171
Score = 69.9 bits (35), Expect = 6e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 311 cttccttccaagtgaccactgtcgactccgggagcaaggcgctgcagttcctggg 365
||||||||||||| ||||||||||| ||||||||||| || ||||||||| ||||
Sbjct: 9 cttccttccaagtaaccactgtcgattccgggagcaaagccctgcagttcttggg 63
>gb|CW476410.1|CW476410 fsbb001f233e09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233e09, DNA
sequence
Length = 733
Score = 89.7 bits (45), Expect = 6e-016
Identities = 102/119 (85%), Gaps = 4/119 (3%)
Strand = Plus / Minus
Query: 735 cagcagcagcgatagcataaacaaccgcaagagaaagggtgcaggcaccgaagaaat-ct 793
||||||||||| ||||| | || ||||||||||||||| |||| || ||||||||| ||
Sbjct: 726 cagcagcagcggtagcagcagcacccgcaagagaaagggagcagacaacgaagaaattct 667
Query: 794 tgccccagctggcaaacagatcaaggcacagttaactgagaactgactagtacagctaa 852
|||||||| ||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct: 666 tgccccag---gcaaacagatcaaggcatagttagctgcaaactgactagtaccgctaa 611
Score = 73.8 bits (37), Expect = 4e-011
Identities = 103/125 (82%), Gaps = 5/125 (4%)
Strand = Plus / Minus
Query: 875 tttggcttactgatttgtaacgtagatgttagccctggatttgcaaaacggaacggaatc 934
|||||| ||||||||| |||| ||||| ||||| || ||||||||||| || ||||||
Sbjct: 561 tttggcctactgatttataacatagatattagcactagatttgcaaaatataatggaatc 502
Query: 935 tgtaaactgatactgcttgagtcgaatcgatcgaagtgattctgcaccagatctccctat 994
|||||| ||||||||||||||| |||| ||||||||||||| || || ||||| |
Sbjct: 501 tgtaaaaggatactgcttgagtcaaatc-----aagtgattctgcaacaaatttccctgt 447
Query: 995 ttcat 999
|||||
Sbjct: 446 ttcat 442
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1137 ttagcctggatacaagttgtcactacagtagtcagta 1173
|||| |||||||||||| ||||||||| ||||||||
Sbjct: 297 ttagtctggatacaagtactcactacagcagtcagta 261
>gb|CW163093.1|CW163093 104_570_11151283_116_36445_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151283, DNA
sequence
Length = 691
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 213 gttccatgtcctcgcggtggacgacagcatcgtcgacaggaagctcatcgagatgctcct 272
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 273 caagaactcgtcctaccaag 292
Score = 44.1 bits (22), Expect = 0.033
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctg 354
||||||||| || || ||||||||||||||||||
Sbjct: 469 agtgaccacggtggattccgggagcaaggcgctg 502
>gb|CW429387.1|CW429387 fsbb001f142j21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142j21, DNA
sequence
Length = 665
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 35 gttccatgtcctcgcggtggacgacagcatcgtcgacaggaagctcatcgagatgctcct 94
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 95 caagaactcgtcctaccaag 114
Score = 73.8 bits (37), Expect = 4e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 525 gtgaatctcatcatcactgactactgcatgccaggcatgacaggatacgatctgctcaag 584
Query: 502 a 502
|
Sbjct: 585 a 585
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct: 525 gtgaatctcatcatcactgactactgcatgccaggcatgacaggata 571
Score = 44.1 bits (22), Expect = 0.033
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctg 354
||||||||| || || ||||||||||||||||||
Sbjct: 291 agtgaccacggtggattccgggagcaaggcgctg 324
>gb|CW433996.1|CW433996 fsbb001f149h18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f149h18, DNA
sequence
Length = 576
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 190 gttccatgtcctcgcggtggacgacagcatcgtcgacaggaagctcatcgagatgctcct 249
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 250 caagaactcgtcctaccaag 269
Score = 44.1 bits (22), Expect = 0.033
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctg 354
||||||||| || || ||||||||||||||||||
Sbjct: 446 agtgaccacggtggattccgggagcaaggcgctg 479
>gb|CW458828.1|CW458828 fsbb001f205e19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205e19, DNA
sequence
Length = 675
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 175 gttccatgtcctcgcggtggacgacagcatcgtcgacaggaagctcatcgagatgctcct 116
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 115 caagaactcgtcctaccaag 96
>gb|CW481408.1|CW481408 fsbb001f240p09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240p09, DNA
sequence
Length = 601
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 373 gttccatgtcctcgcggtggacgacagcatcgtcgacaggaagctcatcgagatgctcct 432
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 433 caagaactcgtcctaccaag 452
>gb|BZ334682.1|BZ334682 hx80h06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx80h06 5', DNA sequence
Length = 738
Score = 73.8 bits (37), Expect = 4e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 212 gtgaatctcatcatcactgactactgcatgccaggcatgacaggatacgatctgctcaag 271
Query: 502 a 502
|
Sbjct: 272 a 272
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct: 212 gtgaatctcatcatcactgactactgcatgccaggcatgacaggata 258
>gb|CW056974.1|CW056974 104_298_10517969_115_30157 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517969, DNA
sequence
Length = 557
Score = 73.8 bits (37), Expect = 4e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 317 gtgaatctcatcatcactgactactgcatgccaggcatgacaggatacgatctgctcaag 376
Query: 502 a 502
|
Sbjct: 377 a 377
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct: 317 gtgaatctcatcatcactgactactgcatgccaggcatgacaggata 363
Score = 44.1 bits (22), Expect = 0.033
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 321 agtgaccactgtcgactccgggagcaaggcgctg 354
||||||||| || || ||||||||||||||||||
Sbjct: 83 agtgaccacggtggattccgggagcaaggcgctg 116
>gb|CW101251.1|CW101251 104_469_11004541_116_34404_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004541, DNA
sequence
Length = 691
Score = 73.8 bits (37), Expect = 4e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 21 gtgaatctcatcatcactgactactgcatgccaggcatgacaggatacgatctgctcaag 80
Query: 502 a 502
|
Sbjct: 81 a 81
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct: 21 gtgaatctcatcatcactgactactgcatgccaggcatgacaggata 67
>gb|CW163094.1|CW163094 104_570_11151283_148_36446_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151283, DNA
sequence
Length = 728
Score = 73.8 bits (37), Expect = 4e-011
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 715 gtgaatctcatcatcactgactactgcatgccaggcatgacaggatacgatctgctcaag 656
Query: 502 a 502
|
Sbjct: 655 a 655
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct: 715 gtgaatctcatcatcactgactactgcatgccaggcatgacaggata 669
>gb|CW429386.1|CW429386 fsbb001f142j21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142j21, DNA
sequence
Length = 694
Score = 73.8 bits (37), Expect = 4e-011
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 595 gtgaatctcatcatcactgactactgcatgccaggcatgacaggatacgatctgctcaag 536
Query: 502 a 502
|
Sbjct: 535 a 535
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct: 595 gtgaatctcatcatcactgactactgcatgccaggcatgacaggata 549
>gb|CD463532.1|CD463532 ETH1_45_D12.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_45_D12_A002 3', mRNA sequence
Length = 120
Score = 71.9 bits (36), Expect = 1e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 875 tttggcttactgatttgtaacgtagatgttagccctggatttgcaaaacggaacggaatc 934
|||||| ||||||||| |||| ||||| ||||| || ||||||||||| || ||||||
Sbjct: 31 tttggcctactgatttataacatagatattagcactagatttgcaaaatataatggaatc 90
Query: 935 tgtaaactgatactgcttgagtcgaatc 962
|||||| ||||||||||||||| ||||
Sbjct: 91 tgtaaaaggatactgcttgagtcaaatc 118
>gb|CW036224.1|CW036224 104_267_10503634_115_30375 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503634, DNA
sequence
Length = 606
Score = 69.9 bits (35), Expect = 6e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 491
|||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct: 558 aacctgatcatcacagactactacatgcccggcatgacagggtatga 604
Score = 69.9 bits (35), Expect = 6e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct: 558 aacctgatcatcacagactactacatgcccggcatgacagggtatga 604
Score = 46.1 bits (23), Expect = 0.008
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatgac 375
|||||| | ||||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 333 accactatggactccgggagcaaggccctatagttcttgggcatccatgac 383
>gb|CF481278.1|CF481278 POL1_71_B09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_B09_A002 3', mRNA sequence
Length = 352
Score = 69.9 bits (35), Expect = 6e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||||||||||||||| ||||| | ||||| || || ||||||||||||||| |||
Sbjct: 95 tgatcatcacagactactggatgccagagatgaccggctacgacctgctcaagaaggtca 154
Query: 509 aggagtc 515
|||||||
Sbjct: 155 aggagtc 161
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 100 tgatcatcacagactactgcatgcc 124
||||||||||||||||||| |||||
Sbjct: 95 tgatcatcacagactactggatgcc 119
>gb|CF486168.1|CF486168 POL1_36_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_D06_A002 3', mRNA sequence
Length = 618
Score = 69.9 bits (35), Expect = 6e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||||||||||||||| ||||| | ||||| || || ||||||||||||||| |||
Sbjct: 76 tgatcatcacagactactggatgccagagatgaccggctacgacctgctcaagaaggtca 135
Query: 509 aggagtc 515
|||||||
Sbjct: 136 aggagtc 142
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 100 tgatcatcacagactactgcatgcc 124
||||||||||||||||||| |||||
Sbjct: 76 tgatcatcacagactactggatgcc 100
>gb|CL197703.1|CL197703 104_424_10943914_114_32334_033 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943914, DNA
sequence
Length = 621
Score = 63.9 bits (32), Expect = 4e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| || ||||| || || || || ||||||
Sbjct: 399 gtgaacatgatcatcacggactactggatgccagggatgaccggctacgagctcctcaag 340
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| |||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 339 cacgtcaaggagtcgtcggagctgagggagatcccggtcgtgatcatgtcgtcggagaac 280
>gb|CW082645.1|CW082645 104_424_10943914_114_32383_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943914, DNA
sequence
Length = 712
Score = 63.9 bits (32), Expect = 4e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| || ||||| || || || || ||||||
Sbjct: 398 gtgaacatgatcatcacggactactggatgccagggatgaccggctacgagctcctcaag 339
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| |||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 338 cacgtcaaggagtcgtcggagctgagggagatcccggtcgtgatcatgtcgtcggagaac 279
>gb|CW198874.1|CW198874 104_623_11183207_116_36840_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183207, DNA
sequence
Length = 686
Score = 63.9 bits (32), Expect = 4e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| || ||||| || || || || ||||||
Sbjct: 357 gtgaacatgatcatcacggactactggatgccagggatgaccggctacgagctcctcaag 298
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| |||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 297 cacgtcaaggagtcgtcggagctgagggagatcccggtcgtgatcatgtcgtcggagaac 238
>gb|CF483095.1|CF483095 POL1_11_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_11_F04_A002 3', mRNA sequence
Length = 574
Score = 63.9 bits (32), Expect = 4e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| || ||||| || || || || ||||||
Sbjct: 48 gtgaacatgatcatcacggactactggatgccagggatgaccggctacgagctcctcaag 107
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| |||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 108 cacgtcaaggagtcgtcggagctgagggagatcccggtcgtgatcatgtcgtcggagaac 167
>gb|CN146978.1|CN146978 WOUND1_46_C04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_C04_A002 3', mRNA sequence
Length = 759
Score = 63.9 bits (32), Expect = 4e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| || ||||| || || || || ||||||
Sbjct: 239 gtgaacatgatcatcacggactactggatgccagggatgaccggctacgagctcctcaag 298
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| |||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 299 cacgtcaaggagtcgtcggagctgagggagatcccggtcgtgatcatgtcgtcggagaac 358
>gb|CN147029.1|CN147029 WOUND1_46_C04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_C04_A002 5', mRNA sequence
Length = 771
Score = 63.9 bits (32), Expect = 4e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| || ||||| || || || || ||||||
Sbjct: 436 gtgaacatgatcatcacggactactggatgccagggatgaccggctacgagctcctcaag 495
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| |||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 496 cacgtcaaggagtcgtcggagctgagggagatcccggtcgtgatcatgtcgtcggagaac 555
>gb|BZ629043.1|BZ629043 ih63h03.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih63h03 5', DNA sequence
Length = 683
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||||||||||||||| ||||| | ||||| || || ||||||||||||||| |||
Sbjct: 362 tgatcatcacagactactggatgccagagatgaccggctacgacctgctcaagaaggtca 421
Query: 509 agg 511
|||
Sbjct: 422 agg 424
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 100 tgatcatcacagactactgcatgcc 124
||||||||||||||||||| |||||
Sbjct: 362 tgatcatcacagactactggatgcc 386
>gb|CL196419.1|CL196419 104_422_10943045_114_32345_021 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943045, DNA
sequence
Length = 669
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||||||||||||||| ||||| | ||||| || || ||||||||||||||| |||
Sbjct: 507 tgatcatcacagactactggatgccagagatgaccggctacgacctgctcaagaaggtca 448
Query: 509 agg 511
|||
Sbjct: 447 agg 445
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 100 tgatcatcacagactactgcatgcc 124
||||||||||||||||||| |||||
Sbjct: 507 tgatcatcacagactactggatgcc 483
>gb|CW082012.1|CW082012 104_422_10943045_114_32316_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943045, DNA
sequence
Length = 693
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||||||||||||||| ||||| | ||||| || || ||||||||||||||| |||
Sbjct: 507 tgatcatcacagactactggatgccagagatgaccggctacgacctgctcaagaaggtca 448
Query: 509 agg 511
|||
Sbjct: 447 agg 445
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 100 tgatcatcacagactactgcatgcc 124
||||||||||||||||||| |||||
Sbjct: 507 tgatcatcacagactactggatgcc 483
>gb|BG559683.1|BG559683 RHIZ2_72_B09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 255
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 644 agctcaagccccacatactgaaaagcagatgca 676
||||||||||||||||| |||||||||||||||
Sbjct: 1 agctcaagccccacatattgaaaagcagatgca 33
>gb|CW427240.1|CW427240 fsbb001f139c03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f139c03, DNA
sequence
Length = 483
Score = 54.0 bits (27), Expect = 3e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaa 503
|||||||||| |||||||| ||||| | ||||||||||| ||||| ||||||||
Sbjct: 395 tgatcatcaccgactactggatgccggagatgacaggatacgacctcctcaagaa 449
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 100 tgatcatcacagactactgcatgcctggcatgacaggatatgacctcctc 149
|||||||||| |||||||| ||||| | ||||||||||| |||||||||
Sbjct: 395 tgatcatcaccgactactggatgccggagatgacaggatacgacctcctc 444
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 401,946
Number of Sequences: 832831
Number of extensions: 401946
Number of successful extensions: 115446
Number of sequences better than 0.5: 80
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 115108
Number of HSP's gapped (non-prelim): 318
length of query: 1343
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1323
effective length of database: 474,703,049
effective search space: 628032133827
effective search space used: 628032133827
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)