BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478113.2.1
(796 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW329729.1|CW329729 104_826_11479998_148_35997_025 Sorgh... 206 2e-051
gb|CL193510.1|CL193510 104_417_10940981_116_32278_027 Sorgh... 198 6e-049
gb|CW113797.1|CW113797 104_488_11105645_116_34559_027 Sorgh... 145 7e-033
gb|CW190211.1|CW190211 104_611_11174383_148_36750_020 Sorgh... 145 7e-033
gb|CW329728.1|CW329728 104_826_11479998_116_35998_025 Sorgh... 113 3e-023
gb|CW040920.1|CW040920 104_274_10506342_116_30434 Sorghum m... 109 4e-022
gb|CW040921.1|CW040921 104_274_10506342_116_30484 Sorghum m... 109 4e-022
gb|CW259920.1|CW259920 104_726_11228689_116_35190_007 Sorgh... 109 4e-022
gb|CW259921.1|CW259921 104_726_11228689_148_35186_007 Sorgh... 109 4e-022
gb|CW272666.1|CW272666 104_745_11403506_148_35359_015 Sorgh... 109 4e-022
gb|CW272667.1|CW272667 104_745_11403506_148_35717_015 Sorgh... 109 4e-022
gb|CW379804.1|CW379804 fsbb001f059e07f0 Sorghum methylation... 82 9e-014
gb|CW078304.1|CW078304 104_391_10896285_116_31928_045 Sorgh... 66 5e-009
gb|CW040919.1|CW040919 104_274_10506342_114_30470 Sorghum m... 64 2e-008
gb|CW272664.1|CW272664 104_745_11403506_116_35355_015 Sorgh... 64 2e-008
gb|CW272665.1|CW272665 104_745_11403506_116_35718_015 Sorgh... 64 2e-008
gb|CW078305.1|CW078305 104_391_10896285_148_31927_045 Sorgh... 62 8e-008
gb|CW081186.1|CW081186 104_417_10940981_114_32273_027 Sorgh... 62 8e-008
gb|CW060149.1|CW060149 104_303_10519704_1_30042 Sorghum met... 46 0.005
gb|CW127930.1|CW127930 104_509_11113708_116_34747_012 Sorgh... 46 0.005
gb|CW167929.1|CW167929 104_577_11153869_148_36492_057 Sorgh... 46 0.005
gb|CW292695.1|CW292695 104_772_11414222_148_35582_049 Sorgh... 46 0.005
gb|CW449339.1|CW449339 fsbb001f183h03f0 Sorghum methylation... 46 0.005
gb|CW451391.1|CW451391 fsbb001f191h03f0 Sorghum methylation... 46 0.005
gb|CW451392.1|CW451392 fsbb001f191h03k0 Sorghum methylation... 46 0.005
gb|CF761292.1|CF761292 DSAF1_73_D08.b1_A011 Drought-stresse... 46 0.005
gb|CF761984.1|CF761984 DSAF1_86_D12.b1_A011 Drought-stresse... 46 0.005
gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative... 46 0.005
gb|CW112603.1|CW112603 104_486_11104979_148_34543_040 Sorgh... 42 0.077
gb|CW135136.1|CW135136 104_519_11117684_148_34825_070 Sorgh... 42 0.077
gb|CW162368.1|CW162368 104_569_11150905_148_36439_005 Sorgh... 42 0.077
gb|CW234413.1|CW234413 104_688_11213976_148_37387_094 Sorgh... 42 0.077
gb|CW310019.1|CW310019 104_799_11469499_116_35745_080 Sorgh... 42 0.077
gb|CW342523.1|CW342523 104_844_11486917_148_36178_057 Sorgh... 42 0.077
gb|CW345526.1|CW345526 104_848_11488538_148_36211_005 Sorgh... 42 0.077
gb|CW354496.1|CW354496 fsbb001f017l15k0 Sorghum methylation... 42 0.077
gb|BI211361.1|BI211361 IP1_59_G01.b1_A002 Immature pannicle... 42 0.077
gb|CD231315.1|CD231315 SS1_15_D05.g1_A012 Salt-stressed see... 42 0.077
gb|CD422916.1|CD422916 SA1_38_D09.g1_A002 Salicylic acid-tr... 42 0.077
gb|CF073694.1|CF073694 FE1_11_D08.g1_A002 Iron-deficient se... 42 0.077
gb|CN124903.1|CN124903 RHOH1_7_D09.g1_A002 Acid- and alkali... 42 0.077
gb|CX606188.1|CX606188 ANR1_1_D05.g1_A002 Anaerobic roots S... 42 0.077
gb|CX613362.1|CX613362 GABR1_7_F02.g1_A002 GA- or brassinol... 42 0.077
gb|CW036422.1|CW036422 104_267_10503749_114_30374 Sorghum m... 40 0.30
gb|CW110352.1|CW110352 104_483_11103655_148_34521_030 Sorgh... 40 0.30
gb|CW313598.1|CW313598 104_803_11471368_116_35787_050 Sorgh... 40 0.30
gb|CW313599.1|CW313599 104_803_11471368_148_35791_050 Sorgh... 40 0.30
gb|CW333780.1|CW333780 104_832_11482145_148_36053_079 Sorgh... 40 0.30
gb|CW468752.1|CW468752 fsbb001f221b21k0 Sorghum methylation... 40 0.30
gb|BG102308.1|BG102308 RHIZ2_24_F12.b1_A003 Rhizome2 (RHIZ2... 40 0.30
gb|CD207610.1|CD207610 HS1_33_C12.g1_A012 Heat-shocked seed... 40 0.30
>gb|CW329729.1|CW329729 104_826_11479998_148_35997_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479998, DNA
sequence
Length = 676
Score = 206 bits (104), Expect = 2e-051
Identities = 140/152 (92%)
Strand = Plus / Minus
Query: 418 ccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatcca 477
|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 212 ccagtagatgagggactcgaggaccatctccatgagcgtgatgaaggagtagaggatcca 153
Query: 478 gtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgc 537
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 152 gtaggccagccactgctcgtcgtctagcttggacgggctctccatcgcttgcaccgacgc 93
Query: 538 gtacagagggtacagcagcatcaccgttggcc 569
||||| ||||||| ||||||||||||||||
Sbjct: 92 gtacaaggggtacaagagcatcaccgttggcc 61
Score = 198 bits (100), Expect = 6e-049
Identities = 124/132 (93%)
Strand = Plus / Minus
Query: 288 cggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaagg 347
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 432 cggcggtggtgaggccgtgcttccggagctgctcccgcacgaacttgtcgtagatgaacg 373
Query: 348 cggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgtacc 407
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct: 372 cggcgcccctgaagttggggagcgccagccacgcgatgaacagcagcttcagctcgtacc 313
Query: 408 agatggggatcc 419
| || |||||||
Sbjct: 312 aaatcgggatcc 301
Score = 113 bits (57), Expect = 3e-023
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct: 540 ccttcttgggtgtgacgaaagcgaggaacttgctcttgggcttgtccttatccttggacg 481
Query: 264 acggcgacgacga 276
|||||||||||||
Sbjct: 480 acggcgacgacga 468
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 186 ttcagtaagcttcatgatcct 206
|||||||||||||||||||||
Sbjct: 676 ttcagtaagcttcatgatcct 656
>gb|CL193510.1|CL193510 104_417_10940981_116_32278_027 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940981, DNA
sequence
Length = 720
Score = 198 bits (100), Expect = 6e-049
Identities = 124/132 (93%)
Strand = Plus / Minus
Query: 288 cggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaagg 347
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 155 cggcggtggtgaggccgtgcttccggagctgctcccgcacgaacttgtcgtagatgaacg 96
Query: 348 cggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgtacc 407
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct: 95 cggcgcccctgaagttggggagcgccagccacgcgatgaacagcagcttcagctcgtacc 36
Query: 408 agatggggatcc 419
| || |||||||
Sbjct: 35 aaatcgggatcc 24
Score = 113 bits (57), Expect = 3e-023
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct: 263 ccttcttgggtgtgacgaaagcgaggaacttgctcttgggcttgtccttatccttggacg 204
Query: 264 acggcgacgacga 276
|||||||||||||
Sbjct: 203 acggcgacgacga 191
Score = 65.9 bits (33), Expect = 5e-009
Identities = 96/116 (82%), Gaps = 7/116 (6%)
Strand = Plus / Minus
Query: 19 tgtctccattccatgttagagttgatgctcacacatacagaatggccatacacacatcgt 78
||||| |||||||||||| |||||||| ||||| |||||| ||| |||||||||||||
Sbjct: 547 tgtcttcattccatgttaaagttgatgttcacaaatacaggatgttcatacacacatcga 488
Query: 79 agaggctctatttcatg------tcgagaacaaacacaacagaaatctagtggagt 128
| | ||||||||||| | | |||||| |||||||||||||||||||||||
Sbjct: 487 aca-gctctatttcaagagaagaacaagaacacacacaacagaaatctagtggagt 433
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 166 atgggatcactgcaacccacttcagtaagcttcatgatcct 206
||||| |||||||| || ||||||||||||||||||||||
Sbjct: 419 atgggttcactgcaccctgcttcagtaagcttcatgatcct 379
>gb|CW113797.1|CW113797 104_488_11105645_116_34559_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105645, DNA
sequence
Length = 649
Score = 145 bits (73), Expect = 7e-033
Identities = 190/229 (82%)
Strand = Plus / Plus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||| ||| ||||||||||||| |||||| |||| | || |||||
Sbjct: 412 gagctgctccctgacgagcttctcgtagatgaaggatgcgcccttgaactgcggcagcac 471
Query: 373 gagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtatatgaggga 432
|||||| |||| ||| |||||||| | |||||| | |||||||||||| | ||| |
Sbjct: 472 gagccaggcgacgaagagcagcttcacggggtaccacacggggatccagtagaggagcgg 531
Query: 433 ctcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactg 492
|||| ||||||||||| ||||||| ||||||||||| ||||||||| | ||||||||
Sbjct: 532 ctcggcgagcatctccagcagcgtgatgaaggagtagatgatccagtacgacagccactg 591
Query: 493 ctcgtcgtccagcttggacgggctctccatcgcccgcacggacgcgtac 541
||||||||||| ||||||||||||||||||||| | ||| |||||||||
Sbjct: 592 ctcgtcgtccaccttggacgggctctccatcgcgcacaccgacgcgtac 640
>gb|CW190211.1|CW190211 104_611_11174383_148_36750_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174383, DNA
sequence
Length = 665
Score = 145 bits (73), Expect = 7e-033
Identities = 190/229 (82%)
Strand = Plus / Plus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||| ||| ||||||||||||| |||||| |||| | || |||||
Sbjct: 123 gagctgctccctgacgagcttctcgtagatgaaggatgcgcccttgaactgcggcagcac 182
Query: 373 gagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtatatgaggga 432
|||||| |||| ||| |||||||| | |||||| | |||||||||||| | ||| |
Sbjct: 183 gagccaggcgacgaagagcagcttcacggggtaccacacggggatccagtagaggagcgg 242
Query: 433 ctcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactg 492
|||| ||||||||||| ||||||| ||||||||||| ||||||||| | ||||||||
Sbjct: 243 ctcggcgagcatctccagcagcgtgatgaaggagtagatgatccagtacgacagccactg 302
Query: 493 ctcgtcgtccagcttggacgggctctccatcgcccgcacggacgcgtac 541
||||||||||| ||||||||||||||||||||| | ||| |||||||||
Sbjct: 303 ctcgtcgtccaccttggacgggctctccatcgcgcacaccgacgcgtac 351
>gb|CW329728.1|CW329728 104_826_11479998_116_35998_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479998, DNA
sequence
Length = 637
Score = 113 bits (57), Expect = 3e-023
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct: 482 ccttcttgggtgtgacgaaagcgaggaacttgctcttgggcttgtccttatccttggacg 541
Query: 264 acggcgacgacga 276
|||||||||||||
Sbjct: 542 acggcgacgacga 554
Score = 79.8 bits (40), Expect = 4e-013
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 288 cggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgt 335
|||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 590 cggcggtggtgaggccgtgcttccggagctgctcccgcacgaacttgt 637
Score = 65.9 bits (33), Expect = 5e-009
Identities = 96/116 (82%), Gaps = 7/116 (6%)
Strand = Plus / Plus
Query: 19 tgtctccattccatgttagagttgatgctcacacatacagaatggccatacacacatcgt 78
||||| |||||||||||| |||||||| ||||| |||||| ||| |||||||||||||
Sbjct: 198 tgtcttcattccatgttaaagttgatgttcacaaatacaggatgttcatacacacatcga 257
Query: 79 agaggctctatttcatg------tcgagaacaaacacaacagaaatctagtggagt 128
| | ||||||||||| | | |||||| |||||||||||||||||||||||
Sbjct: 258 aca-gctctatttcaagagaagaacaagaacacacacaacagaaatctagtggagt 312
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 166 atgggatcactgcaacccacttcagtaagcttcatgatcct 206
||||| |||||||| || ||||||||||||||||||||||
Sbjct: 326 atgggttcactgcaccctgcttcagtaagcttcatgatcct 366
>gb|CW040920.1|CW040920 104_274_10506342_116_30434 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506342, DNA
sequence
Length = 716
Score = 109 bits (55), Expect = 4e-022
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 437 aggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcg 496
||||||||||||||||| |||| ||| || || |||||||||||||| ||||||||||||
Sbjct: 471 aggagcatctccatgagtgtgatgaatgaatacaggatccagtaggctagccactgctcg 530
Query: 497 tcgtccagcttggacgggctctccatcgcccgcac 531
||||| ||||| |||| ||||||||||||| ||||
Sbjct: 531 tcgtcgagcttagacgagctctccatcgcctgcac 565
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 316 ctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcacgag 375
|||||| | ||| ||||||| ||||||||| || || ||||||||||| || || || ||
Sbjct: 206 ctgctccctcacaaacttgttgtagatgaatgctgctcccctgaagtttggaagaaccag 265
Query: 376 ccacgcgatgaacagcagctt 396
||| || ||||||||||||||
Sbjct: 266 ccaggccatgaacagcagctt 286
>gb|CW040921.1|CW040921 104_274_10506342_116_30484 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506342, DNA
sequence
Length = 598
Score = 109 bits (55), Expect = 4e-022
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 437 aggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcg 496
||||||||||||||||| |||| ||| || || |||||||||||||| ||||||||||||
Sbjct: 471 aggagcatctccatgagtgtgatgaatgaatacaggatccagtaggctagccactgctcg 530
Query: 497 tcgtccagcttggacgggctctccatcgcccgcac 531
||||| ||||| |||| ||||||||||||| ||||
Sbjct: 531 tcgtcgagcttagacgagctctccatcgcctgcac 565
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 316 ctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcacgag 375
|||||| | ||| ||||||| ||||||||| || || ||||||||||| || || || ||
Sbjct: 206 ctgctccctcacaaacttgttgtagatgaatgctgctcccctgaagtttggaagaaccag 265
Query: 376 ccacgcgatgaacagcagctt 396
||| || ||||||||||||||
Sbjct: 266 ccaggccatgaacagcagctt 286
>gb|CW259920.1|CW259920 104_726_11228689_116_35190_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228689, DNA
sequence
Length = 688
Score = 109 bits (55), Expect = 4e-022
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 437 aggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcg 496
||||||||||||||||| |||| ||| || || |||||||||||||| ||||||||||||
Sbjct: 370 aggagcatctccatgagtgtgatgaatgaatacaggatccagtaggctagccactgctcg 429
Query: 497 tcgtccagcttggacgggctctccatcgcccgcac 531
||||| ||||| |||| ||||||||||||| ||||
Sbjct: 430 tcgtcgagcttagacgagctctccatcgcctgcac 464
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 316 ctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcacgag 375
|||||| | ||| ||||||| ||||||||| || || ||||||||||| || || || ||
Sbjct: 105 ctgctccctcacaaacttgttgtagatgaatgctgctcccctgaagtttggaagaaccag 164
Query: 376 ccacgcgatgaacagcagctt 396
||| || ||||||||||||||
Sbjct: 165 ccaggccatgaacagcagctt 185
>gb|CW259921.1|CW259921 104_726_11228689_148_35186_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228689, DNA
sequence
Length = 688
Score = 109 bits (55), Expect = 4e-022
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 437 aggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcg 496
||||||||||||||||| |||| ||| || || |||||||||||||| ||||||||||||
Sbjct: 562 aggagcatctccatgagtgtgatgaatgaatacaggatccagtaggctagccactgctcg 503
Query: 497 tcgtccagcttggacgggctctccatcgcccgcac 531
||||| ||||| |||| ||||||||||||| ||||
Sbjct: 502 tcgtcgagcttagacgagctctccatcgcctgcac 468
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 81 ccctgctaaggagtgaaggtgagataggatcgtccacagcttgcccat 34
>gb|CW272666.1|CW272666 104_745_11403506_148_35359_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403506, DNA
sequence
Length = 664
Score = 109 bits (55), Expect = 4e-022
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 437 aggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcg 496
||||||||||||||||| |||| ||| || || |||||||||||||| ||||||||||||
Sbjct: 370 aggagcatctccatgagtgtgatgaatgaatacaggatccagtaggctagccactgctcg 429
Query: 497 tcgtccagcttggacgggctctccatcgcccgcac 531
||||| ||||| |||| ||||||||||||| ||||
Sbjct: 430 tcgtcgagcttagacgagctctccatcgcctgcac 464
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 316 ctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcacgag 375
|||||| | ||| ||||||| ||||||||| || || ||||||||||| || || || ||
Sbjct: 105 ctgctccctcacaaacttgttgtagatgaatgctgctcccctgaagtttggaagaaccag 164
Query: 376 ccacgcgatgaacagcagctt 396
||| || ||||||||||||||
Sbjct: 165 ccaggccatgaacagcagctt 185
>gb|CW272667.1|CW272667 104_745_11403506_148_35717_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403506, DNA
sequence
Length = 530
Score = 109 bits (55), Expect = 4e-022
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 437 aggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcg 496
||||||||||||||||| |||| ||| || || |||||||||||||| ||||||||||||
Sbjct: 370 aggagcatctccatgagtgtgatgaatgaatacaggatccagtaggctagccactgctcg 429
Query: 497 tcgtccagcttggacgggctctccatcgcccgcac 531
||||| ||||| |||| ||||||||||||| ||||
Sbjct: 430 tcgtcgagcttagacgagctctccatcgcctgcac 464
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 316 ctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcacgag 375
|||||| | ||| ||||||| ||||||||| || || ||||||||||| || || || ||
Sbjct: 105 ctgctccctcacaaacttgttgtagatgaatgctgctcccctgaagtttggaagaaccag 164
Query: 376 ccacgcgatgaacagcagctt 396
||| || ||||||||||||||
Sbjct: 165 ccaggccatgaacagcagctt 185
>gb|CW379804.1|CW379804 fsbb001f059e07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059e07, DNA
sequence
Length = 751
Score = 81.8 bits (41), Expect = 9e-014
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 485 agccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgcgtac 541
||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||
Sbjct: 11 agccactgctcgtcgtccaccttggacgggctctccatcgcgcacaccgacgcgtac 67
>gb|CW078304.1|CW078304 104_391_10896285_116_31928_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896285, DNA
sequence
Length = 726
Score = 65.9 bits (33), Expect = 5e-009
Identities = 96/116 (82%), Gaps = 7/116 (6%)
Strand = Plus / Minus
Query: 19 tgtctccattccatgttagagttgatgctcacacatacagaatggccatacacacatcgt 78
||||| |||||||||||| |||||||| ||||| |||||| ||| |||||||||||||
Sbjct: 165 tgtcttcattccatgttaaagttgatgttcacaaatacaggatgttcatacacacatcga 106
Query: 79 agaggctctatttcatg------tcgagaacaaacacaacagaaatctagtggagt 128
| | ||||||||||| | | |||||| |||||||||||||||||||||||
Sbjct: 105 aca-gctctatttcaagagaagaacaagaacacacacaacagaaatctagtggagt 51
Score = 42.1 bits (21), Expect = 0.077
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 166 atgggatcactgcaacccacttcagtaagcttcatga 202
||||| |||||||| || ||||||||||||||||||
Sbjct: 37 atgggttcactgcaccctgcttcagtaagcttcatga 1
>gb|CW040919.1|CW040919 104_274_10506342_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506342, DNA
sequence
Length = 719
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 506 ccctgctaaggagtgaaggtgagataggatcgtccacagcttgcccat 459
>gb|CW272664.1|CW272664 104_745_11403506_116_35355_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403506, DNA
sequence
Length = 580
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 461 ccctgctaaggagtgaaggtgagataggatcgtccacagcttgcccat 414
>gb|CW272665.1|CW272665 104_745_11403506_116_35718_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403506, DNA
sequence
Length = 681
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 461 ccctgctaaggagtgaaggtgagataggatcgtccacagcttgcccat 414
>gb|CW078305.1|CW078305 104_391_10896285_148_31927_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896285, DNA
sequence
Length = 725
Score = 61.9 bits (31), Expect = 8e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 19 tgtctccattccatgttagagttgatgctcacacatacagaatggccatacacacatcg 77
||||| |||||||||||| |||||||| ||||| |||||| ||| |||||||||||||
Sbjct: 649 tgtcttcattccatgttaaagttgatgttcacaaatacaggatgttcatacacacatcg 707
>gb|CW081186.1|CW081186 104_417_10940981_114_32273_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940981, DNA
sequence
Length = 715
Score = 61.9 bits (31), Expect = 8e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 19 tgtctccattccatgttagagttgatgctcacacatacagaatggccatacacacatcg 77
||||| |||||||||||| |||||||| ||||| |||||| ||| |||||||||||||
Sbjct: 566 tgtcttcattccatgttaaagttgatgttcacaaatacaggatgttcatacacacatcg 624
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 99 agaacaaacacaacagaaatctagtggagt 128
|||||| |||||||||||||||||||||||
Sbjct: 651 agaacacacacaacagaaatctagtggagt 680
>gb|CW060149.1|CW060149 104_303_10519704_1_30042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519704, DNA
sequence
Length = 643
Score = 46.1 bits (23), Expect = 0.005
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
|||||| |||| |||||||| ||||||||||| |||||||| || |||||||| ||
Sbjct: 470 ggagtacaggacccagtaggtgagccactgctgatcgtccagggaagaagggctctctat 411
Query: 523 cgcccgcacggacgcgtac 541
|| |||| ||||||||||
Sbjct: 410 ggcgcgcatggacgcgtac 392
>gb|CW127930.1|CW127930 104_509_11113708_116_34747_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113708, DNA
sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 250 cttgtccttggacgacggcgacgacga 276
||||||||||||||||| |||||||||
Sbjct: 354 cttgtccttggacgacgacgacgacga 380
>gb|CW167929.1|CW167929 104_577_11153869_148_36492_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153869, DNA
sequence
Length = 704
Score = 46.1 bits (23), Expect = 0.005
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
|||||| |||| |||||||| ||||||||||| |||||||| || |||||||| ||
Sbjct: 39 ggagtacaggacccagtaggtgagccactgctgatcgtccagggaagaagggctctctat 98
Query: 523 cgcccgcacggacgcgtac 541
|| |||| ||||||||||
Sbjct: 99 ggcgcgcatggacgcgtac 117
>gb|CW292695.1|CW292695 104_772_11414222_148_35582_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414222, DNA
sequence
Length = 561
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 250 cttgtccttggacgacggcgacgacga 276
||||||||||||||||| |||||||||
Sbjct: 127 cttgtccttggacgacgacgacgacga 153
>gb|CW449339.1|CW449339 fsbb001f183h03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f183h03, DNA
sequence
Length = 508
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 250 cttgtccttggacgacggcgacgacga 276
||||||||||||||||| |||||||||
Sbjct: 171 cttgtccttggacgacgacgacgacga 197
>gb|CW451391.1|CW451391 fsbb001f191h03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191h03, DNA
sequence
Length = 591
Score = 46.1 bits (23), Expect = 0.005
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
|||||| |||| |||||||| ||||||||||| |||||||| || |||||||| ||
Sbjct: 279 ggagtacaggacccagtaggtgagccactgctgatcgtccagggaagaagggctctctat 338
Query: 523 cgcccgcacggacgcgtac 541
|| |||| ||||||||||
Sbjct: 339 ggcgcgcatggacgcgtac 357
>gb|CW451392.1|CW451392 fsbb001f191h03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191h03, DNA
sequence
Length = 696
Score = 46.1 bits (23), Expect = 0.005
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
|||||| |||| |||||||| ||||||||||| |||||||| || |||||||| ||
Sbjct: 591 ggagtacaggacccagtaggtgagccactgctgatcgtccagggaagaagggctctctat 532
Query: 523 cgcccgcacggacgcgtac 541
|| |||| ||||||||||
Sbjct: 531 ggcgcgcatggacgcgtac 513
>gb|CF761292.1|CF761292 DSAF1_73_D08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_73_D08_A011 5', mRNA sequence
Length = 408
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 250 cttgtccttggacgacggcgacgacga 276
||||||||||||||||| |||||||||
Sbjct: 134 cttgtccttggacgacgacgacgacga 160
>gb|CF761984.1|CF761984 DSAF1_86_D12.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_86_D12_A011 5', mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 250 cttgtccttggacgacggcgacgacga 276
||||||||||||||||| |||||||||
Sbjct: 134 cttgtccttggacgacgacgacgacga 160
>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like
protein, putative DNA-binding protein homolog,
TATA-binding protein, hypothetical protein M3E9.200,
3-glucanase, K-exchanger-like protein, small heat
shock-like protein, methionine synthase protein, putative
far-red impaired response protein, and putative vegetative
storage protein genes, complete cds
Length = 100773
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 250 cttgtccttggacgacggcgacgacga 276
||||||||||||||||| |||||||||
Sbjct: 71975 cttgtccttggacgacgacgacgacga 71949
>gb|CW112603.1|CW112603 104_486_11104979_148_34543_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104979, DNA
sequence
Length = 390
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 98 gagaacaaacacaacagaaat 118
|||||||||||||||||||||
Sbjct: 24 gagaacaaacacaacagaaat 4
>gb|CW135136.1|CW135136 104_519_11117684_148_34825_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117684, DNA
sequence
Length = 514
Score = 42.1 bits (21), Expect = 0.077
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 256 cttggacgacggcgacgacgacttg 280
||||||||||| |||||||||||||
Sbjct: 114 cttggacgacgacgacgacgacttg 90
>gb|CW162368.1|CW162368 104_569_11150905_148_36439_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150905, DNA
sequence
Length = 723
Score = 42.1 bits (21), Expect = 0.077
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtcca 503
|||||| |||| |||||||| ||||||||||| |||||||
Sbjct: 683 ggagtacaggacccagtaggtgagccactgctgatcgtcca 723
>gb|CW234413.1|CW234413 104_688_11213976_148_37387_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213976, DNA
sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 244 cttgtccttgtccttggacga 264
|||||||||||||||||||||
Sbjct: 636 cttgtccttgtccttggacga 616
>gb|CW310019.1|CW310019 104_799_11469499_116_35745_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469499, DNA
sequence
Length = 600
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 738 agtgagtgtgagtgagtgagc 758
|||||||||||||||||||||
Sbjct: 82 agtgagtgtgagtgagtgagc 62
>gb|CW342523.1|CW342523 104_844_11486917_148_36178_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486917, DNA
sequence
Length = 621
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 244 cttgtccttgtccttggacga 264
|||||||||||||||||||||
Sbjct: 66 cttgtccttgtccttggacga 46
>gb|CW345526.1|CW345526 104_848_11488538_148_36211_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488538, DNA
sequence
Length = 723
Score = 42.1 bits (21), Expect = 0.077
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 256 cttggacgacggcgacgacgacttg 280
||||||||||| |||||||||||||
Sbjct: 44 cttggacgacgacgacgacgacttg 20
>gb|CW354496.1|CW354496 fsbb001f017l15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f017l15, DNA
sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 738 agtgagtgtgagtgagtgagc 758
|||||||||||||||||||||
Sbjct: 199 agtgagtgtgagtgagtgagc 179
>gb|BI211361.1|BI211361 IP1_59_G01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 376
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 gagaacaaacacaacagaaat 118
|||||||||||||||||||||
Sbjct: 68 gagaacaaacacaacagaaat 88
>gb|CD231315.1|CD231315 SS1_15_D05.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_15_D05_A012 5', mRNA sequence
Length = 502
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 gagaacaaacacaacagaaat 118
|||||||||||||||||||||
Sbjct: 329 gagaacaaacacaacagaaat 349
>gb|CD422916.1|CD422916 SA1_38_D09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_38_D09_A002 5', mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 gagaacaaacacaacagaaat 118
|||||||||||||||||||||
Sbjct: 40 gagaacaaacacaacagaaat 60
>gb|CF073694.1|CF073694 FE1_11_D08.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_11_D08_A002 5', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 gagaacaaacacaacagaaat 118
|||||||||||||||||||||
Sbjct: 37 gagaacaaacacaacagaaat 57
>gb|CN124903.1|CN124903 RHOH1_7_D09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_D09_A002 5', mRNA sequence
Length = 838
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 gagaacaaacacaacagaaat 118
|||||||||||||||||||||
Sbjct: 296 gagaacaaacacaacagaaat 316
>gb|CX606188.1|CX606188 ANR1_1_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_D05_A002 5', mRNA sequence
Length = 830
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 244 cttgtccttgtccttggacga 264
|||||||||||||||||||||
Sbjct: 240 cttgtccttgtccttggacga 220
>gb|CX613362.1|CX613362 GABR1_7_F02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_F02_A002 5', mRNA sequence
Length = 761
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 244 cttgtccttgtccttggacga 264
|||||||||||||||||||||
Sbjct: 229 cttgtccttgtccttggacga 209
>gb|CW036422.1|CW036422 104_267_10503749_114_30374 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503749, DNA
sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 tggacgacggcgacgacgac 277
||||||||||||||||||||
Sbjct: 258 tggacgacggcgacgacgac 239
>gb|CW110352.1|CW110352 104_483_11103655_148_34521_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103655, DNA
sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 258 tggacgacggcgacgacgac 277
||||||||||||||||||||
Sbjct: 537 tggacgacggcgacgacgac 556
>gb|CW313598.1|CW313598 104_803_11471368_116_35787_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471368, DNA
sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 tggacgacggcgacgacgac 277
||||||||||||||||||||
Sbjct: 520 tggacgacggcgacgacgac 501
>gb|CW313599.1|CW313599 104_803_11471368_148_35791_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471368, DNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 258 tggacgacggcgacgacgac 277
||||||||||||||||||||
Sbjct: 502 tggacgacggcgacgacgac 521
>gb|CW333780.1|CW333780 104_832_11482145_148_36053_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482145, DNA
sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 258 tggacgacggcgacgacgac 277
||||||||||||||||||||
Sbjct: 214 tggacgacggcgacgacgac 233
>gb|CW468752.1|CW468752 fsbb001f221b21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221b21, DNA
sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 256 cttggacgacggcgacgacgactt 279
||||||||||| ||||||||||||
Sbjct: 325 cttggacgacgacgacgacgactt 302
>gb|BG102308.1|BG102308 RHIZ2_24_F12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 258 tggacgacggcgacgacgac 277
||||||||||||||||||||
Sbjct: 18 tggacgacggcgacgacgac 37
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 270,618
Number of Sequences: 832831
Number of extensions: 270618
Number of successful extensions: 79939
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79823
Number of HSP's gapped (non-prelim): 114
length of query: 796
length of database: 491,359,669
effective HSP length: 20
effective length of query: 776
effective length of database: 474,703,049
effective search space: 368369566024
effective search space used: 368369566024
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)