BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478084.2.1
(1395 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG357389.1|BG357389 OV2_29_C07.g1_A002 Ovary 2 (OV2) Sor... 735 0.0
gb|BZ332129.1|BZ332129 hx25e11.g1 WGS-SbicolorF (JM107 adap... 648 0.0
gb|CD224939.1|CD224939 CCC1_37_A04.b1_A007 Callus culture/c... 648 0.0
gb|BG103087.1|BG103087 RHIZ2_18_A04.g1_A003 Rhizome2 (RHIZ2... 615 e-174
gb|AW287611.2|AW287611 LG1_244_C06.b1_A002 Light Grown 1 (L... 507 e-142
gb|BG051515.1|BG051515 FM1_57_E01.g1_A003 Floral-Induced Me... 496 e-138
gb|BG102542.1|BG102542 RHIZ2_34_D03.g1_A003 Rhizome2 (RHIZ2... 486 e-135
gb|BG103256.1|BG103256 RHIZ2_18_A04.b1_A003 Rhizome2 (RHIZ2... 486 e-135
gb|BE355906.1|BE355906 DG1_11_D11.g1_A002 Dark Grown 1 (DG1... 482 e-134
gb|BG102865.1|BG102865 RHIZ2_34_D03.b1_A003 Rhizome2 (RHIZ2... 474 e-131
gb|AW285351.1|AW285351 LG1_244_C06.g1_A002 Light Grown 1 (L... 462 e-128
gb|BE355598.1|BE355598 DG1_115_H07.g1_A002 Dark Grown 1 (DG... 452 e-125
gb|CW264819.1|CW264819 104_733_11231515_116_35255_068 Sorgh... 270 3e-070
gb|CF761981.1|CF761981 DSAF1_86_D08.b1_A011 Drought-stresse... 266 5e-069
gb|BG051195.1|BG051195 FM1_57_E01.b1_A003 Floral-Induced Me... 262 8e-068
gb|CD228356.1|CD228356 CCC1_7_A01.b1_A007 Callus culture/ce... 176 4e-042
gb|CN133080.1|CN133080 OX1_10_B10.b1_A002 Oxidatively-stres... 176 4e-042
gb|CX617349.1|CX617349 GABR1_33_E12.b1_A002 GA- or brassino... 176 4e-042
gb|CX610190.1|CX610190 ANR1_17_E01.b1_A002 Anaerobic roots ... 174 1e-041
gb|CX619836.1|CX619836 GABR1_48_D10.b1_A002 GA- or brassino... 168 9e-040
gb|CD231568.1|CD231568 SS1_22_H03.b1_A012 Salt-stressed see... 147 3e-033
gb|CD224962.1|CD224962 CCC1_37_A04.g1_A007 Callus culture/c... 107 3e-021
gb|CW166995.1|CW166995 104_576_11153364_116_36487_048 Sorgh... 84 4e-014
gb|CD220761.1|CD220761 CCC1_69_C10.b1_A007 Callus culture/c... 76 1e-011
gb|CN130722.1|CN130722 RHOH1_43_H02.b1_A002 Acid- and alkal... 76 1e-011
gb|CW166996.1|CW166996 104_576_11153364_148_36488_048 Sorgh... 72 2e-010
gb|BZ332128.1|BZ332128 hx25e11.b1 WGS-SbicolorF (JM107 adap... 66 9e-009
gb|BG558694.1|BG558694 RHIZ2_59_C03.g1_A003 Rhizome2 (RHIZ2... 62 1e-007
gb|CD220781.1|CD220781 CCC1_69_C10.g1_A007 Callus culture/c... 56 9e-006
gb|CD220939.1|CD220939 CCC1_72_C11.g1_A007 Callus culture/c... 56 9e-006
gb|CD222383.1|CD222383 CCC1_21_B05.g1_A007 Callus culture/c... 56 9e-006
gb|CD231664.1|CD231664 SS1_22_H03.g1_A012 Salt-stressed see... 56 9e-006
gb|CN130798.1|CN130798 RHOH1_43_H02.g1_A002 Acid- and alkal... 56 9e-006
gb|CN133162.1|CN133162 OX1_10_B10.g1_A002 Oxidatively-stres... 56 9e-006
gb|CX617434.1|CX617434 GABR1_33_E12.g1_A002 GA- or brassino... 56 9e-006
gb|CL190331.1|CL190331 104_408_10906008_114_32484_090 Sorgh... 54 4e-005
gb|CL190332.1|CL190332 104_408_10906008_116_32502_090 Sorgh... 54 4e-005
gb|CW405669.1|CW405669 fsbb001f098f08k0 Sorghum methylation... 54 4e-005
gb|CN149830.1|CN149830 WOUND1_65_D04.b1_A002 Wounded leaves... 52 1e-004
gb|CN149904.1|CN149904 WOUND1_65_D04.g1_A002 Wounded leaves... 52 1e-004
gb|CW083259.1|CW083259 104_425_10944176_116_32357_024 Sorgh... 48 0.002
gb|CW265509.1|CW265509 104_734_11231920_116_35258_050 Sorgh... 48 0.002
gb|AW679133.1|AW679133 WS1_22_D06.g1_A002 Water-stressed 1 ... 48 0.002
gb|AW746138.1|AW746138 WS1_39_H12.g1_A002 Water-stressed 1 ... 48 0.002
gb|BE594782.1|BE594782 PI1_45_D09.g1_A002 Pathogen induced ... 48 0.002
gb|CD222367.1|CD222367 CCC1_21_E12.g1_A007 Callus culture/c... 48 0.002
gb|CF756069.1|CF756069 DSAF1_3_G03.b1_A011 Drought-stressed... 48 0.002
gb|CF756142.1|CF756142 DSAF1_3_G03.g1_A011 Drought-stressed... 48 0.002
gb|CF759536.1|CF759536 DSAF1_46_D10.b1_A011 Drought-stresse... 48 0.002
gb|CW474980.1|CW474980 fsbb001f231b24k0 Sorghum methylation... 46 0.009
gb|BG948278.1|BG948278 IP1_11_E11.g1_A002 Immature pannicle... 46 0.009
gb|BG948590.1|BG948590 IP1_11_E11.b1_A002 Immature pannicle... 46 0.009
gb|BG947552.1|BG947552 IP1_5_H11.g1_A002 Immature pannicle ... 44 0.035
gb|CL155605.1|CL155605 104_341_10782265_114_31471_361 Sorgh... 42 0.14
gb|CL157465.1|CL157465 104_345_10783593_116_31478_153 Sorgh... 42 0.14
gb|CW025914.1|CW025914 104_227_10488466_114_30506 Sorghum m... 42 0.14
gb|CW054283.1|CW054283 104_294_10516424_115_30183 Sorghum m... 42 0.14
gb|CW171357.1|CW171357 104_582_11155697_148_36526_077 Sorgh... 42 0.14
gb|CW217671.1|CW217671 104_651_11195775_148_37457_064 Sorgh... 42 0.14
gb|CW262600.1|CW262600 104_730_11230165_148_35221_059 Sorgh... 42 0.14
gb|CW315428.1|CW315428 104_806_11472354_116_35824_071 Sorgh... 42 0.14
gb|CW378581.1|CW378581 fsbb001f057g21k0 Sorghum methylation... 42 0.14
gb|CW481767.1|CW481767 fsbb001f241i11f0 Sorghum methylation... 42 0.14
gb|AW923410.1|AW923410 DG1_51_F07.g1_A002 Dark Grown 1 (DG1... 42 0.14
gb|CD207686.1|CD207686 HS1_34_H12.b1_A012 Heat-shocked seed... 42 0.14
gb|CF771851.1|CF771851 DSBF1_24_H07.g1_A010 Drought-stresse... 42 0.14
gb|CX610276.1|CX610276 ANR1_17_E01.g1_A002 Anaerobic roots ... 42 0.14
>gb|BG357389.1|BG357389 OV2_29_C07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 682
Score = 735 bits (371), Expect = 0.0
Identities = 414/427 (96%), Gaps = 1/427 (0%)
Strand = Plus / Minus
Query: 244 tggtactgatgacttgtggggaggagtt-ggagatcagaagtcgtagatgagcttccgga 302
||||||||| ||||| | |||||||| | |||||||||||||||||||||||||||||||
Sbjct: 430 tggtactgacgacttcttgggaggagctcggagatcagaagtcgtagatgagcttccgga 371
Query: 303 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 311
Query: 363 cgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccatgaacacgg 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 310 cgctggggagcacgaacgcgagcccctcgtacgcgatgccgccggggcccatgaacacgg 251
Query: 423 gccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gccggccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 191
Query: 483 ggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtccggctgcagct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtccggctgcagct 131
Query: 543 ccaggtagtccagcgctgaccggcagtacccgtcgtccatccggtccaacgcggcctgga 602
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 130 ccaggtagtccagcgccgaccggcagtacccgtcgtccatccggtccagcgccgcctgga 71
Query: 603 tcacggacgcgccctctgccaccccggccgtcaccgtgccggcgttggccagcggcgtcg 662
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 70 tcacgggcgcgccctccgccaccccggccgtcaccgtgccggcgttcgccagcggcgtcg 11
Query: 663 ccgtgaa 669
|||||||
Sbjct: 10 ccgtgaa 4
Score = 167 bits (84), Expect = 3e-039
Identities = 127/140 (90%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 68 attgttcattcatcatacaattgcaggggctcgtaaataattcggcacaaaaggtatgcg 127
|||||||||||||||||||||||| |||||||||||| | |||||||||| ||| |
Sbjct: 667 attgttcattcatcatacaattgctggggctcgtaaaccaaacggcacaaaaaatataca 608
Query: 128 ccctgcccaaagggggcaggcaggaacggaaaagtgtgcaggaactatgtgtgaaatcaa 187
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 607 ccctgcccaa-gggggcaggcaagaacgggaaagtgtgcaggaactatgtgtgaaatcaa 549
Query: 188 agaatattgctgcaacctac 207
||||| ||||||||||||||
Sbjct: 548 agaatcttgctgcaacctac 529
>gb|BZ332129.1|BZ332129 hx25e11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx25e11 5', DNA sequence
Length = 463
Score = 648 bits (327), Expect = 0.0
Identities = 431/464 (92%), Gaps = 10/464 (2%)
Strand = Plus / Minus
Query: 634 caccgtgccggcgttggccagcggcgtcgccgtgaaagatcacgttgccgaagtagccct 693
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 463 caccgtgccggcgttcgccagcggcgtcgccgtgaa-gatcacgttgccgaagtagccct 405
Query: 694 ccggaagcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggtgggct 753
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 404 cgggaagcggcggctgcagccgctgccggccgtccgtggcgcagtacagcttggtgggct 345
Query: 754 ggtcggccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcacag 813
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 344 ggtccgccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcaccg 285
Query: 814 cgtacgtgctgaaccgcggcgcgccctc------gcgcgcggggacctgcgaacggaggc 867
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 284 cgtacgtgctgaaccgcggcgcgccctcgcgctcgcgcgcggggacctgcgaacgcaggc 225
Query: 868 ggacgagctcggcgcgggagagcttgaagatagccacggctgtgggcggcgtcgccggct 927
|| | |||||||||||||||||||||||||| || ||||| | |||||||||||||||||
Sbjct: 224 ggcccagctcggcgcgggagagcttgaagatggcaacggccgcgggcggcgtcgccggct 165
Query: 928 tggacgtgagggccgcctgtggcggctc---agatagcatggcgggcgccggctggtact 984
||| |||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 164 tggccgtgagggccgcctgtggcggctcggaggacagcatggcgggcgccggctggtact 105
Query: 985 cgatgtgcgggtagcccggggtcggcggatcgcgcgcgcggaggagcgaccggtcaatga 1044
||| |||||||||| |||||| |||||| || |||||||||||||| |||||||||||||
Sbjct: 104 cgacgtgcgggtagaccggggccggcgggtcacgcgcgcggaggagggaccggtcaatga 45
Query: 1045 agggcatgccggcgatcgggacgccgcggcagaggtccgcccac 1088
|||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 44 agggcatgacggcgatcgggacgccacggcagaggtccgcccac 1
>gb|CD224939.1|CD224939 CCC1_37_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_A04_A007 3', mRNA sequence
Length = 670
Score = 648 bits (327), Expect = 0.0
Identities = 370/383 (96%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 244 tggtactgatgacttgtggggaggagtt-ggagatcagaagtcgtagatgagcttccgga 302
||||||||| ||||| | |||||||| | |||||||||||||||||||||||||||||||
Sbjct: 383 tggtactgacgacttcttgggaggagctcggagatcagaagtcgtagatgagcttccgga 324
Query: 303 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 264
Query: 363 cgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccatgaacacgg 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 cgctggggagcacgaacgcgagcccctcgtacgcgatgccgccggggcccatgaacacgg 204
Query: 423 gccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gccggccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 144
Query: 483 ggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtccggctgcagct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtccggctgcagct 84
Query: 543 ccaggtagtccagcgctgaccggcagtacccgtcgtccatccggtccaacgcggcctgga 602
||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 83 ccaggtagtccagcggcgaccggcagtacccgtcgtccatccggtccagcgccgcctgga 24
Query: 603 tcacggacgcgccctctgccacc 625
|||||| ||||||||| ||||||
Sbjct: 23 tcacggccgcgccctccgccacc 1
Score = 176 bits (89), Expect = 4e-042
Identities = 129/141 (91%), Gaps = 1/141 (0%)
Strand = Plus / Minus
Query: 68 attgttcattcatcatacaattgcaggggctcgtaaataattcggcacaaaag-gtatgc 126
|||||||||||||||||||||||| |||||||||||| | |||||||||| |||| |
Sbjct: 633 attgttcattcatcatacaattgctggggctcgtaaaccaaacggcacaaaaaagtatac 574
Query: 127 gccctgcccaaagggggcaggcaggaacggaaaagtgtgcaggaactatgtgtgaaatca 186
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 573 accctgcccaaagggggcaggcaagaacgggaaagtgtgcaggaactatgtgtgaaatca 514
Query: 187 aagaatattgctgcaacctac 207
|||||| ||||||||||||||
Sbjct: 513 aagaatcttgctgcaacctac 493
>gb|BG103087.1|BG103087 RHIZ2_18_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 568
Score = 615 bits (310), Expect = e-174
Identities = 335/342 (97%), Gaps = 1/342 (0%)
Strand = Plus / Minus
Query: 244 tggtactgatgacttgtggggaggag-ttggagatcagaagtcgtagatgagcttccgga 302
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 342 tggtactgatgacttcttgggaggagcttggagatcagaagtcgtagatgagcttccgga 283
Query: 303 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 223
Query: 363 cgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccatgaacacgg 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 222 cgctggggagcacgaacgcgagcccctcgtacgcgatgccgccggggcccatgaacacgg 163
Query: 423 gccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 482
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggcggccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 103
Query: 483 ggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtccggctgcagct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtccggctgcagct 43
Query: 543 ccaggtagtccagcgctgaccggcagtacccgtcgtccatcc 584
|||||||||||||||| |||||||||||||||||||||||||
Sbjct: 42 ccaggtagtccagcgccgaccggcagtacccgtcgtccatcc 1
Score = 133 bits (67), Expect = 5e-029
Identities = 113/127 (88%), Gaps = 1/127 (0%)
Strand = Plus / Minus
Query: 82 atacaattgcaggggctcgtaaataattcggcacaaaaggtatgcgccctgcccaaaggg 141
|||||||||| |||||||||||| || |||||||||| | | ||||||||||||||
Sbjct: 566 atacaattgctggggctcgtaaaccatacggcacaaaaaagttacaccctgcccaaaggg 507
Query: 142 ggcaggcaggaacgga-aaagtgtgcaggaactatgtgtgaaatcaaagaatattgctgc 200
|||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 506 ggcaggcaagaacggggaaagtgtgcaggaactatgtgtgaaatcaaagaatcttgctgc 447
Query: 201 aacctac 207
|||||||
Sbjct: 446 aacctac 440
>gb|AW287611.2|AW287611 LG1_244_C06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 426
Score = 507 bits (256), Expect = e-142
Identities = 347/377 (92%), Gaps = 9/377 (2%)
Strand = Plus / Minus
Query: 768 ccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcacagcgtacgtgctgaac 827
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 426 ccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcaccgcgtacgtgctgaac 367
Query: 828 cgcggcgcgccctcgcgc------gcggggacctgcgaacggaggcggacgagctcggcg 881
|||||||||||||||||| ||||||||||||||||| |||||| | |||||||||
Sbjct: 366 cgcggcgcgccctcgcgctcgcgcgcggggacctgcgaacgcaggcggcccagctcggcg 307
Query: 882 cgggagagcttgaagatagccacggctgtgggcggcgtcgccggcttggacgtgagggcc 941
||||||||||||||||| || ||||| | |||||||||||||||||||| ||||||||||
Sbjct: 306 cgggagagcttgaagatggcaacggccgcgggcggcgtcgccggcttggccgtgagggcc 247
Query: 942 gcctgtggcggctcagat---agcatggcgggcgccggctggtactcgatgtgcgggtag 998
|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct: 246 gcctgtggcggctcggaggacagcatggcgggcgccggctggtactcgacgtgcgggtag 187
Query: 999 cccggggtcggcggatcgcgcgcgcggaggagcgaccggtcaatgaagggcatgccggcg 1058
|||||| |||||| || |||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 186 accggggccggcgggtcacgcgcgcggaggagggaccggtcaatgaagggcatgacggcg 127
Query: 1059 atcgggacgccgcggcagaggtccgcccacgagttgatgaagtgcagtccggagaagccg 1118
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 126 atcgggacgccgcggcagaggtccgcccacgagttgatgaagtgcaggccggagaagccg 67
Query: 1119 ccggccacgtggtgctg 1135
|||| |||||||||||
Sbjct: 66 tcggctacgtggtgctg 50
>gb|BG051515.1|BG051515 FM1_57_E01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 504
Score = 496 bits (250), Expect = e-138
Identities = 272/278 (97%), Gaps = 1/278 (0%)
Strand = Plus / Minus
Query: 244 tggtactgatgacttgtggggaggag-ttggagatcagaagtcgtagatgagcttccgga 302
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 278 tggtactgatgacttcttgggaggagcttggagatcagaagtcgtagatgagcttccgga 219
Query: 303 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 159
Query: 363 cgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccatgaacacgg 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 158 cgctggggagcacgaacgcgagcccctcgtacgcgatgccgccggggcccatgaacacgg 99
Query: 423 gccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 482
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ggcggccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 39
Query: 483 ggttggggcaccggaacgtgtgcgccccgcggaccagc 520
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ggttggggcaccggaacgtgtgcgccccgcggaccagc 1
Score = 145 bits (73), Expect = 1e-032
Identities = 117/129 (90%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 81 catacaattgcaggggctcgtaaataattcggcacaaaag-gtatgcgccctgcccaaag 139
||||||||||| |||||||||||| || |||||||||| |||| | ||||||||||||
Sbjct: 504 catacaattgctggggctcgtaaaccatacggcacaaaaaagtatacaccctgcccaaag 445
Query: 140 ggggcaggcaggaacgga-aaagtgtgcaggaactatgtgtgaaatcaaagaatattgct 198
|||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 ggggcaggcaagaacggggaaagtgtgcaggaactatgtgtgaaatcaaagaatcttgct 385
Query: 199 gcaacctac 207
|||||||||
Sbjct: 384 gcaacctac 376
>gb|BG102542.1|BG102542 RHIZ2_34_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 493
Score = 486 bits (245), Expect = e-135
Identities = 267/273 (97%), Gaps = 1/273 (0%)
Strand = Plus / Minus
Query: 244 tggtactgatgacttgtggggaggag-ttggagatcagaagtcgtagatgagcttccgga 302
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 273 tggtactgatgacttcttgggaggagcttggagatcagaagtcgtagatgagcttccgga 214
Query: 303 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 154
Query: 363 cgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccatgaacacgg 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 153 cgctggggagcacgaacgcgagcccctcgtacgcgatgccgccggggcccatgaacacgg 94
Query: 423 gccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 482
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggcggccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 34
Query: 483 ggttggggcaccggaacgtgtgcgccccgcgga 515
|||||||||||||||||||||||||||||||||
Sbjct: 33 ggttggggcaccggaacgtgtgcgccccgcgga 1
Score = 119 bits (60), Expect = 7e-025
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 129 cctgcccaaagggggcaggcaggaacgga-aaagtgtgcaggaactatgtgtgaaatcaa 187
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 450 cctgcccaaagggggcaggcaagaacggggaaagtgtgcaggaactatgtgtgaaatcaa 391
Query: 188 agaatattgctgcaacctac 207
||||| ||||||||||||||
Sbjct: 390 agaatcttgctgcaacctac 371
>gb|BG103256.1|BG103256 RHIZ2_18_A04.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 457
Score = 486 bits (245), Expect = e-135
Identities = 340/372 (91%), Gaps = 9/372 (2%)
Strand = Plus / Minus
Query: 773 cgccagggacgcgcaccgccacacgtgcgccgccagcacagcgtacgtgctgaaccgcgg 832
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 457 cgccaggnacgcgcaccgccacacgtgcgccgccagcacngcgtacgtgctgaaccgcgg 398
Query: 833 cgcgccctcgcgc------gcggggacctgcgaacggaggcggacgagctcggcgcggga 886
||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 397 cgcgccctcgcgctcgcgcgcggggacctgcgaacgcaggcggcccagctcggcgcggga 338
Query: 887 gagcttgaagatagccacggctgtgggcggcgtcgccggcttggacgtgagggccgcctg 946
|||||||||||| |||||||| | |||||||||||||||||| | |||||||||||||||
Sbjct: 337 gagcttgaagatggccacggccgcgggcggcgtcgccggcttcgccgtgagggccgcctg 278
Query: 947 tggcggctcagat---agcatggcgggcgccggctggtactcgatgtgcgggtagcccgg 1003
|||||||| || |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 277 cggcggctcggaggacagcatggcgggcgccggctggtactcgacgtgcgggtagaccgg 218
Query: 1004 ggtcggcggatcgcgcgcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgg 1063
||||||||| || |||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct: 217 ggtcggcgggtcacgcgcgcggaggagggagcggtcaatgaagggcatgacggcgatcgg 158
Query: 1064 gacgccgcggcagaggtccgcccacgagttgatgaagtgcagtccggagaagccgccggc 1123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 157 gacgccgcggcagaggtccgcccacgagttgatgaagtgcaggccggagaagccgtcggc 98
Query: 1124 cacgtggtgctg 1135
|||||||||||
Sbjct: 97 tacgtggtgctg 86
Score = 73.8 bits (37), Expect = 4e-011
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1168 ttgaagtgggtcacctggagcacgagcagcgggaagg 1204
|||||||||||||||||||||||||||||||||||||
Sbjct: 54 ttgaagtgggtcacctggagcacgagcagcgggaagg 18
>gb|BE355906.1|BE355906 DG1_11_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 254
Score = 482 bits (243), Expect = e-134
Identities = 249/251 (99%)
Strand = Plus / Minus
Query: 290 atgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctg 194
Query: 350 ccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccgggg 409
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 193 ccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtacgcgatgccgccgggg 134
Query: 410 cccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccag 469
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 cccatgaacacgggccggccccacccgaagtccgcgtcgtggatgggcaggcgcacccag 74
Query: 470 ctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacagg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacagg 14
Query: 530 tccggctgcag 540
|||||||||||
Sbjct: 13 tccggctgcag 3
>gb|BG102865.1|BG102865 RHIZ2_34_D03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 450
Score = 474 bits (239), Expect = e-131
Identities = 333/364 (91%), Gaps = 9/364 (2%)
Strand = Plus / Minus
Query: 781 acgcgcaccgccacacgtgcgccgccagcacagcgtacgtgctgaaccgcggcgcgccct 840
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 449 acgcgcaccgccacacgtgcgccgccagcaccgcgtacgtgctgaaccgcggcgcgccct 390
Query: 841 c------gcgcgcggggacctgcgaacggaggcggacgagctcggcgcgggagagcttga 894
| ||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct: 389 cgcgctcgcgcgcggggacctgcgaacgcaggcggcccagctcggcgcgggagagcttga 330
Query: 895 agatagccacggctgtgggcggcgtcgccggcttggacgtgagggccgcctgtggcggct 954
|||| |||||||| | |||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 329 agatggccacggccgcgggcggcgtcgccggcttcgccgtgagggccgcctgcggcggct 270
Query: 955 c---agatagcatggcgggcgccggctggtactcgatgtgcgggtagcccggggtcggcg 1011
| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 269 cggaggacagcatggcgggcgccggctggtactcgacgtgcgggtagaccggggtcggcg 210
Query: 1012 gatcgcgcgcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgggacgccgc 1071
| || |||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct: 209 ggtcacgcgcgcggaggagggagcggtcaatgaagggcatgacggcgatcgggacgccgc 150
Query: 1072 ggcagaggtccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggt 1131
|||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||
Sbjct: 149 ggcagaggtccgcccacgagttgatgaagtgcaggccggagaagccgtcggctacgtggt 90
Query: 1132 gctg 1135
||||
Sbjct: 89 gctg 86
Score = 73.8 bits (37), Expect = 4e-011
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1168 ttgaagtgggtcacctggagcacgagcagcgggaagg 1204
|||||||||||||||||||||||||||||||||||||
Sbjct: 54 ttgaagtgggtcacctggagcacgagcagcgggaagg 18
>gb|AW285351.1|AW285351 LG1_244_C06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 462 bits (233), Expect = e-128
Identities = 258/265 (97%), Gaps = 1/265 (0%)
Strand = Plus / Minus
Query: 244 tggtactgatgacttgtggggaggagtt-ggagatcagaagtcgtagatgagcttccgga 302
||||||||| ||||| | |||||||| | |||||||||||||||||||||||||||||||
Sbjct: 265 tggtactgacgacttcttgggaggagctcggagatcagaagtcgtagatgagcttccgga 206
Query: 303 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 146
Query: 363 cgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccatgaacacgg 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 145 cgctggggagcacgaacgcgagcccctcgtacgcgatgccgccggggcccatgaacacgg 86
Query: 423 gccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 gccggccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 26
Query: 483 ggttggggcaccggaacgtgtgcgc 507
|||||||||||||||||||||||||
Sbjct: 25 ggttggggcaccggaacgtgtgcgc 1
Score = 163 bits (82), Expect = 5e-038
Identities = 129/142 (90%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 68 attgttcattcatcatacaattg-caggggctcgtaaataattcggcacaaaag-gtatg 125
||||||||||||||||||||||| | |||||||||||| | |||||||||| ||||
Sbjct: 505 attgttcattcatcatacaattggctggggctcgtaaaccaaacggcacaaaaaagtata 446
Query: 126 cgccctgcccaaagggggcaggcaggaacggaaaagtgtgcaggaactatgtgtgaaatc 185
| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 445 caccctgcccaaagggggcaggcaagaacgggaaagtgtgcaggaactatgtgtgaaatc 386
Query: 186 aaagaatattgctgcaacctac 207
||||||| ||||||||||||||
Sbjct: 385 aaagaatcttgctgcaacctac 364
>gb|BE355598.1|BE355598 DG1_115_H07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 452 bits (228), Expect = e-125
Identities = 268/280 (95%), Gaps = 1/280 (0%)
Strand = Plus / Minus
Query: 244 tggtactgatgacttgtggggaggagtt-ggagatcagaagtcgtagatgagcttccgga 302
||||||||| ||||| | |||||||| | |||||||||||||||||||||||||||||||
Sbjct: 280 tggtactgacgacttcttgggaggagctcggagatcagaagtcgtagatgagcttccgga 221
Query: 303 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 362
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 220 acttctacatgtgctccgcctgcagcgagatggccactgacaggctgccgtcgcggttgg 161
Query: 363 cgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccatgaacacgg 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 160 cgctggggagcacgaacgcgagcccctcgtacgcgatgccgccggggcccatgaacacgg 101
Query: 423 gccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagcccca 482
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 100 gccggccccacccgaagtccgtgtcgtggatgggcacgcgcacccagctggtgagcccca 41
Query: 483 ggttggggcaccggaacgtgtgcgccccgcggaccagcgc 522
|||||||||||||||||||||||||||||||||||||||
Sbjct: 40 tgttggggcaccggaacgtgtgcgccccgcggaccagcgc 1
Score = 119 bits (60), Expect = 7e-025
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 128 ccctgcccaaagggggcaggcaggaacggaaaagtgtgcaggaactatgtgtgaaatcaa 187
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 457 ccctgcccaa-gggggcaggcaagaacgggaaagtgtgcaggaactatgtgtgaaatcaa 399
Query: 188 agaatattgctgcaacctac 207
||||| ||||||||||||||
Sbjct: 398 agaatcttgctgcaacctac 379
>gb|CW264819.1|CW264819 104_733_11231515_116_35255_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231515, DNA
sequence
Length = 556
Score = 270 bits (136), Expect = 3e-070
Identities = 166/176 (94%)
Strand = Plus / Plus
Query: 960 agcatggcgggcgccggctggtactcgatgtgcgggtagcccggggtcggcggatcgcgc 1019
|||||||||||||||||||||||||||| |||||||||| |||||| |||||| || |||
Sbjct: 8 agcatggcgggcgccggctggtactcgacgtgcgggtagaccggggccggcgggtcacgc 67
Query: 1020 gcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgggacgccgcggcagagg 1079
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 68 gcgcggaggagggaccggtcaatgaagggcatgacggcgatcgggacgccgcggcagagg 127
Query: 1080 tccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggtgctg 1135
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 128 tccgcccacgagttgatgaagtgcaggccggagaagccgtcggctacgtggtgctg 183
Score = 44.1 bits (22), Expect = 0.035
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1168 ttgaagtgggtcacctggagca 1189
||||||||||||||||||||||
Sbjct: 215 ttgaagtgggtcacctggagca 236
>gb|CF761981.1|CF761981 DSAF1_86_D08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_86_D08_A011 5', mRNA sequence
Length = 423
Score = 266 bits (134), Expect = 5e-069
Identities = 156/162 (96%), Gaps = 1/162 (0%)
Strand = Plus / Minus
Query: 244 tggtactgatgacttgtggggaggagtt-ggagatcagaagtcgtagatgagcttccgga 302
||||||||| ||||| | |||||||| | |||||||||||||||||||||||||||||||
Sbjct: 162 tggtactgacgacttcttgggaggagctcggagatcagaagtcgtagatgagcttccgga 103
Query: 303 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 acttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcggttgg 43
Query: 363 cgctggggagcacgaacgcgagcccctcgtaggcgatgccgc 404
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 42 cgctggggagcacgaacgcgagcccctcgtacgcgatgccgc 1
Score = 176 bits (89), Expect = 4e-042
Identities = 129/141 (91%), Gaps = 1/141 (0%)
Strand = Plus / Minus
Query: 68 attgttcattcatcatacaattgcaggggctcgtaaataattcggcacaaaag-gtatgc 126
|||||||||||||||||||||||| |||||||||||| | |||||||||| |||| |
Sbjct: 412 attgttcattcatcatacaattgctggggctcgtaaaccaaacggcacaaaaaagtatac 353
Query: 127 gccctgcccaaagggggcaggcaggaacggaaaagtgtgcaggaactatgtgtgaaatca 186
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 352 accctgcccaaagggggcaggcaagaacgggaaagtgtgcaggaactatgtgtgaaatca 293
Query: 187 aagaatattgctgcaacctac 207
|||||| ||||||||||||||
Sbjct: 292 aagaatcttgctgcaacctac 272
>gb|BG051195.1|BG051195 FM1_57_E01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 466
Score = 262 bits (132), Expect = 8e-068
Identities = 165/176 (93%)
Strand = Plus / Minus
Query: 960 agcatggcgggcgccggctggtactcgatgtgcgggtagcccggggtcggcggatcgcgc 1019
|||||||||||||||||||||||||| | |||||||||| ||||||||||||| || |||
Sbjct: 466 agcatggcgggcgccggctggtactcaacgtgcgggtagaccggggtcggcgggtcacgc 407
Query: 1020 gcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgggacgccgcggcagagg 1079
||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 406 gcgcggaggagggagcggtcaatgaagggcatgacggcgatcgggacgccgcggcagagg 347
Query: 1080 tccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggtgctg 1135
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 346 tccgcccacgagttgatgaagtgcaggccggagaagccgtcggctacgtggtgctg 291
Score = 107 bits (54), Expect = 3e-021
Identities = 90/100 (90%), Gaps = 4/100 (4%)
Strand = Plus / Minus
Query: 1168 ttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcg 1227
||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||
Sbjct: 259 ttgaagtgggtcacctggagcacgagcagcgggaaggcgg---tgtcgtcggagaagtcg 203
Query: 1228 acggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||||||||||||||||| ||| || | |||||||||||
Sbjct: 202 acggtggggatgaggcgcttgagctc-catggtgggcgcg 164
>gb|CD228356.1|CD228356 CCC1_7_A01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_A01_A007 3', mRNA sequence
Length = 532
Score = 176 bits (89), Expect = 4e-042
Identities = 245/297 (82%)
Strand = Plus / Minus
Query: 288 agatgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggc 347
|||| |||||||||||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 421 agattagcttccggaacttctccatgtgctcagcctgcaaagagatagcaatggacaggc 362
Query: 348 tgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccgg 407
|||| || | || || || ||||| || ||||| || || || || || || ||||| |
Sbjct: 361 tgccatctccatttgcacttgggaggacaaacgccagaccttcatatgcaataccgcctg 302
Query: 408 ggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcaccc 467
| ||||||||||| || || ||||| |||||||| || || ||||| || ||||| ||||
Sbjct: 301 gccccatgaacacaggacggccccatccgaagtcggcatcatggataggaaggcgtaccc 242
Query: 468 agctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgaca 527
||||||||||||| ||||| ||||||||||| || || || || || ||||| || ||||
Sbjct: 241 agctggtgagccctaggttcgggcaccggaaggtatgtgctccacgcaccagtgctgaca 182
Query: 528 ggtccggctgcagctccaggtagtccagcgctgaccggcagtacccgtcgtccatcc 584
||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 181 aatccggttgcagctccaggtagtccagcgctgagcggcagtagtcgttgtccatcc 125
>gb|CN133080.1|CN133080 OX1_10_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_B10_A002 3', mRNA sequence
Length = 679
Score = 176 bits (89), Expect = 4e-042
Identities = 245/297 (82%)
Strand = Plus / Minus
Query: 288 agatgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggc 347
|||| |||||||||||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 575 agattagcttccggaacttctccatgtgctcagcctgcaaagagatagcaatggacaggc 516
Query: 348 tgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccgg 407
|||| || | || || || ||||| || ||||| || || || || || || ||||| |
Sbjct: 515 tgccatctccatttgcacttgggaggacaaacgccagaccttcatatgcaataccgcctg 456
Query: 408 ggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcaccc 467
| ||||||||||| || || ||||| |||||||| || || ||||| || ||||| ||||
Sbjct: 455 gccccatgaacacaggacggccccatccgaagtcggcatcatggataggaaggcgtaccc 396
Query: 468 agctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgaca 527
||||||||||||| ||||| ||||||||||| || || || || || ||||| || ||||
Sbjct: 395 agctggtgagccctaggttcgggcaccggaaggtatgtgctccacgcaccagtgctgaca 336
Query: 528 ggtccggctgcagctccaggtagtccagcgctgaccggcagtacccgtcgtccatcc 584
||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 335 aatccggttgcagctccaggtagtccagcgctgagcggcagtagtcgttgtccatcc 279
>gb|CX617349.1|CX617349 GABR1_33_E12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_E12_A002 3', mRNA sequence
Length = 790
Score = 176 bits (89), Expect = 4e-042
Identities = 245/297 (82%)
Strand = Plus / Minus
Query: 288 agatgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggc 347
|||| |||||||||||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 413 agattagcttccggaacttctccatgtgctcagcctgcaaagagatagcaatggacaggc 354
Query: 348 tgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccgg 407
|||| || | || || || ||||| || ||||| || || || || || || ||||| |
Sbjct: 353 tgccatctccatttgcacttgggaggacaaacgccagaccttcatatgcaataccgcctg 294
Query: 408 ggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcaccc 467
| ||||||||||| || || ||||| |||||||| || || ||||| || ||||| ||||
Sbjct: 293 gccccatgaacacaggacggccccatccgaagtcggcatcatggataggaaggcgtaccc 234
Query: 468 agctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgaca 527
||||||||||||| ||||| ||||||||||| || || || || || ||||| || ||||
Sbjct: 233 agctggtgagccctaggttcgggcaccggaaggtatgtgctccacgcaccagtgctgaca 174
Query: 528 ggtccggctgcagctccaggtagtccagcgctgaccggcagtacccgtcgtccatcc 584
||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 173 aatccggttgcagctccaggtagtccagcgctgagcggcagtagtcgttgtccatcc 117
>gb|CX610190.1|CX610190 ANR1_17_E01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_E01_A002 3', mRNA sequence
Length = 726
Score = 174 bits (88), Expect = 1e-041
Identities = 241/292 (82%)
Strand = Plus / Minus
Query: 293 agcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctgccg 352
|||||||||||||||||||||||||| ||||||| ||||| || | ||||||||||||
Sbjct: 356 agcttccggaacttctccatgtgctcagcctgcaaagagatagcaatggacaggctgcca 297
Query: 353 tcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggccc 412
|| | || || || ||||| || ||||| || || || || || || ||||| || |||
Sbjct: 296 tctccatttgcacttgggaggacaaacgccagaccttcatatgcaataccgcctggcccc 237
Query: 413 atgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctg 472
|||||||| || || ||||| |||||||| || || ||||| || ||||| |||||||||
Sbjct: 236 atgaacacaggacggccccatccgaagtcggcatcatggataggaaggcgtacccagctg 177
Query: 473 gtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtcc 532
|||||||| ||||| ||||||||||| || || || || || ||||| || |||| |||
Sbjct: 176 gtgagccctaggttcgggcaccggaaggtatgtgctccacgcaccagtgctgacaaatcc 117
Query: 533 ggctgcagctccaggtagtccagcgctgaccggcagtacccgtcgtccatcc 584
|| |||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 116 ggttgcagctccaggtagtccagcgctgagcggcagtagtcgttgtccatcc 65
>gb|CX619836.1|CX619836 GABR1_48_D10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_48_D10_A002 3', mRNA sequence
Length = 736
Score = 168 bits (85), Expect = 9e-040
Identities = 244/297 (82%)
Strand = Plus / Minus
Query: 288 agatgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggc 347
|||| |||||||||||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 359 agattagcttccggaacttctccatgtgctcagcctgcaaagagatagcaatggacaggc 300
Query: 348 tgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccgg 407
|||| || | || || || ||||| || ||||| || || || || || || ||||| |
Sbjct: 299 tgccatctccatttgcacttgggaggacaaacgccagaccttcatatgcaataccgcctg 240
Query: 408 ggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcaccc 467
| ||||||||||| || || ||||| |||||||| || || ||||| || ||||| ||||
Sbjct: 239 gccccatgaacacaggacggccccatccgaagtcggcatcatggataggaaggcgtaccc 180
Query: 468 agctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgaca 527
||||||||||||| ||||| ||||||||||| || || || || || ||||| || |||
Sbjct: 179 agctggtgagccctaggttcgggcaccggaaggtatgtgctccacgcaccagtgctgacg 120
Query: 528 ggtccggctgcagctccaggtagtccagcgctgaccggcagtacccgtcgtccatcc 584
||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 119 aatccggttgcagctccaggtagtccagcgctgagcggcagtagtcgttgtccatcc 63
>gb|CD231568.1|CD231568 SS1_22_H03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_H03_A012 3', mRNA sequence
Length = 634
Score = 147 bits (74), Expect = 3e-033
Identities = 218/266 (81%)
Strand = Plus / Minus
Query: 288 agatgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggc 347
|||| |||||||||||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 266 agattagcttccggaacttctccatgtgctcagcctgcaaagagatagcaatggacaggc 207
Query: 348 tgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccgg 407
|||| || | || || || ||||| || ||||| || || || || || || ||||| |
Sbjct: 206 tgccatctccatttgcacttgggaggacaaacgccagaccttcatatgcaataccgcctg 147
Query: 408 ggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcaccc 467
| ||||||||||| || || ||||| |||||||| || || ||||| || ||||| ||||
Sbjct: 146 gccccatgaacacaggacggccccatccgaagtcggcatcatggataggaaggcgtaccc 87
Query: 468 agctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgaca 527
||||||||||||| ||||| ||||||||||| || || || || || ||||| || ||||
Sbjct: 86 agctggtgagccctaggttcgggcaccggaaggtatgtgctccacgcaccagtgctgaca 27
Query: 528 ggtccggctgcagctccaggtagtcc 553
||||| ||||||||||||||||||
Sbjct: 26 aatccggttgcagctccaggtagtcc 1
>gb|CD224962.1|CD224962 CCC1_37_A04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_A04_A007 5', mRNA sequence
Length = 635
Score = 107 bits (54), Expect = 3e-021
Identities = 90/100 (90%), Gaps = 4/100 (4%)
Strand = Plus / Minus
Query: 1168 ttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcg 1227
||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||
Sbjct: 541 ttgaagtgggtcacctggagcacgagcagcgggaaggcgg---tgtcgtcggagaagtcg 485
Query: 1228 acggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||||||||||||||||| ||| || | |||||||||||
Sbjct: 484 acggtggggatgaggcgcttgagctc-catggtgggcgcg 446
Score = 101 bits (51), Expect = 2e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 1073 gcagaggtccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggtg 1132
||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct: 635 gcagaggtccgcccacgagttgatgaagtgcaggccggagaagccgtcggctacgtggtg 576
Query: 1133 ctg 1135
|||
Sbjct: 575 ctg 573
>gb|CW166995.1|CW166995 104_576_11153364_116_36487_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153364, DNA
sequence
Length = 552
Score = 83.8 bits (42), Expect = 4e-014
Identities = 78/88 (88%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 1180 acctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtggggatg 1239
||||||||||||||||||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 372 acctggagcacgagcagcgggaaggcgg---tgtcgtcggagaagtcgacggtggggatg 428
Query: 1240 aggcgctcgagatcacctggtgggcgcg 1267
||||||| ||| || | |||||||||||
Sbjct: 429 aggcgcttgagctc-catggtgggcgcg 455
>gb|CD220761.1|CD220761 CCC1_69_C10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_69_C10_A007 3', mRNA sequence
Length = 538
Score = 75.8 bits (38), Expect = 1e-011
Identities = 125/154 (81%)
Strand = Plus / Minus
Query: 288 agatgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggc 347
|||| |||||||||||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 166 agattagcttccggaacttctccatgtgctcagcctgcaaagagatagcaatggacaggc 107
Query: 348 tgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccgg 407
|||| || | || || || ||||| || ||||| || || || || || || ||||| |
Sbjct: 106 tgccatctccatttgcacttgggaggacaaacgccagaccttcatatgcaataccgcctg 47
Query: 408 ggcccatgaacacgggccgcccccacccgaagtc 441
| ||||||||||| || || ||||| ||||||||
Sbjct: 46 gccccatgaacacaggacggccccatccgaagtc 13
>gb|CN130722.1|CN130722 RHOH1_43_H02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_43_H02_A002 3', mRNA sequence
Length = 737
Score = 75.8 bits (38), Expect = 1e-011
Identities = 125/154 (81%)
Strand = Plus / Minus
Query: 288 agatgagcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggc 347
|||| |||||||||||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 365 agattagcttccggaacttctccatgtgctcagcctgcaaagagatagcaatggacaggc 306
Query: 348 tgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccgg 407
|||| || | || || || ||||| || ||||| || || || || || || ||||| |
Sbjct: 305 tgccatctccatttgcacttgggaggacaaacgccagaccttcatatgcaataccgcctg 246
Query: 408 ggcccatgaacacgggccgcccccacccgaagtc 441
| ||||||||||| || || ||||| ||||||||
Sbjct: 245 gccccatgaacacaggacggccccatccgaagtc 212
>gb|CW166996.1|CW166996 104_576_11153364_148_36488_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153364, DNA
sequence
Length = 672
Score = 71.9 bits (36), Expect = 2e-010
Identities = 72/82 (87%), Gaps = 4/82 (4%)
Strand = Plus / Minus
Query: 1186 agcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtggggatgaggcgc 1245
||||||||||||||||||| || ||||||| | |||||||||||||||||||||||||
Sbjct: 672 agcacgagcagcgggaaggcgg---tgtcgtcggagaagtcgacggtggggatgaggcgc 616
Query: 1246 tcgagatcacctggtgggcgcg 1267
| ||| || | |||||||||||
Sbjct: 615 ttgagctc-catggtgggcgcg 595
>gb|BZ332128.1|BZ332128 hx25e11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx25e11 5', DNA sequence
Length = 368
Score = 65.9 bits (33), Expect = 9e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 68 attgttcattcatcatacaattgcaggggctcgtaaa 104
|||||||||||||||||||||||| ||||||||||||
Sbjct: 311 attgttcattcatcatacaattgctggggctcgtaaa 347
Score = 50.1 bits (25), Expect = 6e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 36 aagttaattaatcttattaatctgtatcattca 68
|||||||||| ||||||| ||||||||||||||
Sbjct: 267 aagttaattagtcttattgatctgtatcattca 299
>gb|BG558694.1|BG558694 RHIZ2_59_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 425
Score = 61.9 bits (31), Expect = 1e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 288 agatgagcttccggaacttctccatgtgctccgcctgca 326
|||| |||||||||||||||||||||||||| |||||||
Sbjct: 47 agattagcttccggaacttctccatgtgctcagcctgca 9
>gb|CD220781.1|CD220781 CCC1_69_C10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_69_C10_A007 5', mRNA sequence
Length = 631
Score = 56.0 bits (28), Expect = 9e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1177 gtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggg 1236
|||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||
Sbjct: 545 gtcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggg 486
Query: 1237 atgaggcg 1244
||||||||
Sbjct: 485 atgaggcg 478
>gb|CD220939.1|CD220939 CCC1_72_C11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_72_C11_A007 5', mRNA sequence
Length = 585
Score = 56.0 bits (28), Expect = 9e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1177 gtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggg 1236
|||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||
Sbjct: 547 gtcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggg 488
Query: 1237 atgaggcg 1244
||||||||
Sbjct: 487 atgaggcg 480
>gb|CD222383.1|CD222383 CCC1_21_B05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_B05_A007 5', mRNA sequence
Length = 660
Score = 56.0 bits (28), Expect = 9e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1177 gtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggg 1236
|||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||
Sbjct: 547 gtcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggg 488
Query: 1237 atgaggcg 1244
||||||||
Sbjct: 487 atgaggcg 480
>gb|CD231664.1|CD231664 SS1_22_H03.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_22_H03_A012 5', mRNA sequence
Length = 709
Score = 56.0 bits (28), Expect = 9e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1177 gtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggg 1236
|||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||
Sbjct: 546 gtcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggg 487
Query: 1237 atgaggcg 1244
||||||||
Sbjct: 486 atgaggcg 479
>gb|CN130798.1|CN130798 RHOH1_43_H02.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_43_H02_A002 5', mRNA sequence
Length = 834
Score = 56.0 bits (28), Expect = 9e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1177 gtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggg 1236
|||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||
Sbjct: 539 gtcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggg 480
Query: 1237 atgaggcg 1244
||||||||
Sbjct: 479 atgaggcg 472
>gb|CN133162.1|CN133162 OX1_10_B10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_B10_A002 5', mRNA sequence
Length = 746
Score = 56.0 bits (28), Expect = 9e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1177 gtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggg 1236
|||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||
Sbjct: 436 gtcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggg 377
Query: 1237 atgaggcg 1244
||||||||
Sbjct: 376 atgaggcg 369
>gb|CX617434.1|CX617434 GABR1_33_E12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_E12_A002 5', mRNA sequence
Length = 817
Score = 56.0 bits (28), Expect = 9e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1177 gtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggg 1236
|||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||
Sbjct: 530 gtcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggg 471
Query: 1237 atgaggcg 1244
||||||||
Sbjct: 470 atgaggcg 463
>gb|CL190331.1|CL190331 104_408_10906008_114_32484_090 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906008, DNA
sequence
Length = 623
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1178 tcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggga 1237
||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| ||||
Sbjct: 150 tcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggga 209
Query: 1238 tgaggcg 1244
|||||||
Sbjct: 210 tgaggcg 216
>gb|CL190332.1|CL190332 104_408_10906008_116_32502_090 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906008, DNA
sequence
Length = 651
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1178 tcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggga 1237
||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| ||||
Sbjct: 625 tcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggga 566
Query: 1238 tgaggcg 1244
|||||||
Sbjct: 565 tgaggcg 559
>gb|CW405669.1|CW405669 fsbb001f098f08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098f08, DNA
sequence
Length = 558
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1178 tcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggga 1237
||||||||||||| || || ||||||| ||||||||||| ||| | || ||||| ||||
Sbjct: 363 tcacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcggga 422
Query: 1238 tgaggcg 1244
|||||||
Sbjct: 423 tgaggcg 429
>gb|CN149830.1|CN149830 WOUND1_65_D04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_65_D04_A002 3', mRNA sequence
Length = 719
Score = 52.0 bits (26), Expect = 1e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1179 cacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtggggat 1238
|||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||||
Sbjct: 286 cacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcgggat 227
Query: 1239 gaggcg 1244
||||||
Sbjct: 226 gaggcg 221
>gb|CN149904.1|CN149904 WOUND1_65_D04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_65_D04_A002 5', mRNA sequence
Length = 673
Score = 52.0 bits (26), Expect = 1e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1179 cacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtggggat 1238
|||||||||||| || || ||||||| ||||||||||| ||| | || ||||| |||||
Sbjct: 505 cacctggagcaccagtagagggaaggccgagatgtcgtcggtgtaatccacggtcgggat 446
Query: 1239 gaggcg 1244
||||||
Sbjct: 445 gaggcg 440
>gb|CW083259.1|CW083259 104_425_10944176_116_32357_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944176, DNA
sequence
Length = 734
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 408 ggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcag 459
||||||||||| | || || ||||| |||||||| ||||||| |||||||||
Sbjct: 407 ggcccatgaacgccgggcggccccagccgaagtcggcgtcgtagatgggcag 458
>gb|CW265509.1|CW265509 104_734_11231920_116_35258_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231920, DNA
sequence
Length = 602
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 408 ggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcag 459
||||||||||| | || || ||||| |||||||| ||||||| |||||||||
Sbjct: 177 ggcccatgaacgccgggcggccccagccgaagtcggcgtcgtagatgggcag 126
>gb|AW679133.1|AW679133 WS1_22_D06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 296
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 415 gaacacgggccgcccccacccgaagtccgcgtcgtggatgggca 458
|||| |||| || ||||| |||||||| ||||||||||||||||
Sbjct: 214 gaacccggggcggccccagccgaagtcggcgtcgtggatgggca 171
>gb|AW746138.1|AW746138 WS1_39_H12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 512
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 415 gaacacgggccgcccccacccgaagtccgcgtcgtggatgggca 458
|||| |||| || ||||| |||||||| ||||||||||||||||
Sbjct: 161 gaacccggggcggccccagccgaagtcggcgtcgtggatgggca 118
>gb|BE594782.1|BE594782 PI1_45_D09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 615
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 415 gaacacgggccgcccccacccgaagtccgcgtcgtggatgggca 458
|||| |||| || ||||| |||||||| ||||||||||||||||
Sbjct: 275 gaacccggggcggccccagccgaagtcggcgtcgtggatgggca 232
>gb|CD222367.1|CD222367 CCC1_21_E12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_E12_A007 5', mRNA sequence
Length = 652
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1177 gtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaagtcgacggtgggg 1236
|||||||||||||| || || |||| || ||||||||||| ||| | || ||||| |||
Sbjct: 549 gtcacctggagcaccagtagagggagggccgagatgtcgtcggtgtaatccacggtcggg 490
Query: 1237 atgaggcg 1244
||||||||
Sbjct: 489 atgaggcg 482
>gb|CF756069.1|CF756069 DSAF1_3_G03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_G03_A011 5', mRNA sequence
Length = 438
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 415 gaacacgggccgcccccacccgaagtccgcgtcgtggatgggca 458
|||| |||| || ||||| |||||||| ||||||||||||||||
Sbjct: 70 gaacccggggcggccccagccgaagtcggcgtcgtggatgggca 27
>gb|CF756142.1|CF756142 DSAF1_3_G03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_G03_A011 3', mRNA sequence
Length = 421
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 415 gaacacgggccgcccccacccgaagtccgcgtcgtggatgggca 458
|||| |||| || ||||| |||||||| ||||||||||||||||
Sbjct: 70 gaacccggggcggccccagccgaagtcggcgtcgtggatgggca 27
>gb|CF759536.1|CF759536 DSAF1_46_D10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_46_D10_A011 5', mRNA sequence
Length = 319
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 415 gaacacgggccgcccccacccgaagtccgcgtcgtggatgggca 458
|||| |||| || ||||| |||||||| ||||||||||||||||
Sbjct: 70 gaacccggggcggccccagccgaagtcggcgtcgtggatgggca 27
>gb|CW474980.1|CW474980 fsbb001f231b24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f231b24, DNA
sequence
Length = 235
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1180 acctggagcacgagcagcgggaa 1202
|||||||||||||||||||||||
Sbjct: 80 acctggagcacgagcagcgggaa 58
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 406,807
Number of Sequences: 832831
Number of extensions: 406807
Number of successful extensions: 121664
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121492
Number of HSP's gapped (non-prelim): 142
length of query: 1395
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1375
effective length of database: 474,703,049
effective search space: 652716692375
effective search space used: 652716692375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)