BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.2
(1190 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN138077.1|CN138077 OX1_61_C04.g1_A002 Oxidatively-stres... 985 0.0
gb|CN127238.1|CN127238 RHOH1_21_G07.g3_A002 Acid- and alkal... 963 0.0
gb|CF428636.1|CF428636 PH1_9_G09.g1_A002 Phosphorous-defici... 868 0.0
gb|CF479933.1|CF479933 POL1_62_E11.g1_A002 Pollen Sorghum b... 813 0.0
gb|CN123933.1|CN123933 RHOH1_1_D01.g1_A002 Acid- and alkali... 803 0.0
gb|CF433879.1|CF433879 NIT1_30_C03.g1_A002 Nitrogen-deficie... 793 0.0
gb|CD229208.1|CD229208 CCC1_13_F11.g1_A007 Callus culture/c... 759 0.0
gb|BI141003.1|BI141003 IP1_41_H11.b1_A002 Immature pannicle... 718 0.0
gb|CD429608.1|CD429608 ETH1_14_C02.g1_A002 Ethylene-treated... 718 0.0
gb|CF432761.1|CF432761 NIT1_18_G06.g1_A002 Nitrogen-deficie... 718 0.0
gb|BI140992.1|BI140992 IP1_41_G12.b1_A002 Immature pannicle... 716 0.0
gb|CF427278.1|CF427278 PH1_4_H04.g1_A002 Phosphorous-defici... 716 0.0
gb|CN135765.1|CN135765 OX1_38_G08.g1_A002 Oxidatively-stres... 708 0.0
gb|BE360219.1|BE360219 DG1_62_C12.b1_A002 Dark Grown 1 (DG1... 706 0.0
gb|CD428979.1|CD428979 ETH1_1_A03.g1_A002 Ethylene-treated ... 696 0.0
gb|BE125749.1|BE125749 DG1_55_H11.b1_A002 Dark Grown 1 (DG1... 682 0.0
gb|CN133810.1|CN133810 OX1_18_A10.g1_A002 Oxidatively-stres... 658 0.0
gb|CN127149.1|CN127149 RHOH1_21_G07.b1_A002 Acid- and alkal... 656 0.0
gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2... 652 0.0
gb|BG357173.1|BG357173 OV2_10_F11.b1_A002 Ovary 2 (OV2) Sor... 620 e-176
gb|BG465738.1|BG465738 RHIZ2_48_A08.b1_A003 Rhizome2 (RHIZ2... 620 e-176
gb|BI076233.1|BI076233 IP1_27_E07.b1_A002 Immature pannicle... 620 e-176
gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stres... 589 e-166
gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum b... 587 e-166
gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkal... 575 e-162
gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sor... 573 e-161
gb|CN132666.1|CN132666 OX1_7_B07.g1_A002 Oxidatively-stress... 559 e-157
gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkal... 543 e-152
gb|BG947952.1|BG947952 IP1_7_E07.b1_A002 Immature pannicle ... 521 e-146
gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated... 513 e-143
gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-defici... 504 e-140
gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficie... 502 e-140
gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1... 490 e-136
gb|BG559522.1|BG559522 RHIZ2_55_G08.b1_A003 Rhizome2 (RHIZ2... 476 e-132
gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorgh... 428 e-118
gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1... 428 e-118
gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/c... 428 e-118
gb|BI098963.1|BI098963 IP1_35_E08.b1_A002 Immature pannicle... 404 e-111
gb|BE358306.1|BE358306 DG1_27_D04.b2_A002 Dark Grown 1 (DG1... 392 e-107
gb|BE363151.1|BE363151 DG1_9_E08.g1_A002 Dark Grown 1 (DG1)... 381 e-103
gb|AW282821.1|AW282821 LG1_305_H12.g1_A002 Light Grown 1 (L... 375 e-102
gb|BG466056.1|BG466056 RHIZ2_48_A08.g1_A003 Rhizome2 (RHIZ2... 373 e-101
gb|CD229877.1|CD229877 CCC1_20_D09.g1_A007 Callus culture/c... 363 2e-098
gb|BI099425.1|BI099425 IP1_41_H11.g1_A002 Immature pannicle... 339 4e-091
gb|BI351083.1|BI351083 IP1_69_F01.g1_A002 Immature pannicle... 331 9e-089
gb|BI098677.1|BI098677 IP1_35_E08.g1_A002 Immature pannicle... 307 1e-081
gb|BG104126.1|BG104126 RHIZ2_40_H02.b1_A003 Rhizome2 (RHIZ2... 291 7e-077
gb|BE360832.1|BE360832 DG1_67_F09.b2_A002 Dark Grown 1 (DG1... 276 4e-072
gb|BE363067.1|BE363067 DG1_9_E08.b1_A002 Dark Grown 1 (DG1)... 276 4e-072
gb|CW122781.1|CW122781 104_501_11110857_148_34673_033 Sorgh... 258 1e-066
gb|CW265393.1|CW265393 104_734_11231851_116_35259_070 Sorgh... 258 1e-066
gb|CW265595.1|CW265595 104_735_11231967_148_35265_064 Sorgh... 258 1e-066
gb|CW268100.1|CW268100 104_738_11401097_148_35299_069 Sorgh... 258 1e-066
gb|CW265397.1|CW265397 104_734_11231853_148_35263_085 Sorgh... 234 2e-059
gb|CW411486.1|CW411486 fsbb001f106k20f0 Sorghum methylation... 222 6e-056
gb|CN132579.1|CN132579 OX1_7_B07.b1_A002 Oxidatively-stress... 178 8e-043
gb|BI076240.1|BI076240 IP1_27_F07.b1_A002 Immature pannicle... 153 4e-035
gb|CW265594.1|CW265594 104_735_11231967_116_35269_064 Sorgh... 151 2e-034
gb|BI099415.1|BI099415 IP1_41_G12.g1_A002 Immature pannicle... 139 7e-031
gb|CX609214.1|CX609214 ANR1_11_G12.b1_A002 Anaerobic roots ... 133 4e-029
gb|CX609300.1|CX609300 ANR1_11_G12.g1_A002 Anaerobic roots ... 133 4e-029
gb|CW122780.1|CW122780 104_501_11110857_116_34677_033 Sorgh... 123 4e-026
gb|CW268099.1|CW268099 104_738_11401097_116_35303_069 Sorgh... 123 4e-026
gb|CW247562.1|CW247562 104_708_11221843_116_35017_070 Sorgh... 86 9e-015
gb|CW463139.1|CW463139 fsbb001f211j12f0 Sorghum methylation... 86 9e-015
gb|CW277062.1|CW277062 104_751_11405822_116_35410_063 Sorgh... 74 3e-011
gb|BI351290.1|BI351290 IP1_69_F01.b1_A002 Immature pannicle... 72 1e-010
gb|CW463140.1|CW463140 fsbb001f211j12k0 Sorghum methylation... 68 2e-009
gb|CW249841.1|CW249841 104_711_11223062_116_35044_051 Sorgh... 66 8e-009
gb|BG103788.1|BG103788 RHIZ2_40_H02.g1_A003 Rhizome2 (RHIZ2... 64 3e-008
gb|BG558935.1|BG558935 RHIZ2_52_E08.g1_A003 Rhizome2 (RHIZ2... 64 3e-008
gb|BI211751.1|BI211751 IP1_27_E07.g1_A002 Immature pannicle... 64 3e-008
gb|CF433764.1|CF433764 NIT1_30_C03.b1_A002 Nitrogen-deficie... 64 3e-008
gb|CN133728.1|CN133728 OX1_18_A10.b1_A002 Oxidatively-stres... 64 3e-008
gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorgh... 62 1e-007
gb|BE361185.1|BE361185 DG1_70_D12.b1_A002 Dark Grown 1 (DG1... 58 2e-006
gb|BE361254.1|BE361254 DG1_70_D12.g1_A002 Dark Grown 1 (DG1... 58 2e-006
gb|BG101966.1|BG101966 RHIZ2_22_A05.g1_A003 Rhizome2 (RHIZ2... 58 2e-006
gb|BG241494.1|BG241494 RHIZ2_50_A05.g1_A003 Rhizome2 (RHIZ2... 58 2e-006
gb|BG559082.1|BG559082 RHIZ2_54_D10.g1_A003 Rhizome2 (RHIZ2... 56 8e-006
gb|BG947663.1|BG947663 IP1_7_E07.g1_A002 Immature pannicle ... 56 8e-006
gb|BZ628758.1|BZ628758 ih62b02.b1 WGS-SbicolorF (DH5a methy... 52 1e-004
gb|BZ628759.1|BZ628759 ih62b02.g1 WGS-SbicolorF (DH5a methy... 52 1e-004
gb|CL177459.1|CL177459 104_384_10893845_116_31916_293 Sorgh... 52 1e-004
gb|CW180237.1|CW180237 104_594_11160530_148_36631_003 Sorgh... 52 1e-004
gb|CW184571.1|CW184571 104_600_11165220_116_36688_034 Sorgh... 52 1e-004
gb|CW249842.1|CW249842 104_711_11223062_148_35048_051 Sorgh... 52 1e-004
gb|CW318949.1|CW318949 104_811_11474228_148_35883_074 Sorgh... 52 1e-004
gb|AW676905.1|AW676905 DG1_2_H03.b1_A002 Dark Grown 1 (DG1)... 52 1e-004
gb|AW676989.1|AW676989 DG1_3_F03.b1_A002 Dark Grown 1 (DG1)... 52 1e-004
gb|AW676996.1|AW676996 DG1_3_D03.b1_A002 Dark Grown 1 (DG1)... 52 1e-004
gb|AW923175.1|AW923175 DG1_49_A09.g1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|BE353027.1|BE353027 DG1_2_H03.g1_A002 Dark Grown 1 (DG1)... 52 1e-004
gb|BE356694.1|BE356694 DG1_12_D07.b1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|BE356814.1|BE356814 DG1_12_D07.g1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|BE357168.1|BE357168 DG1_147_F02.b1_A002 Dark Grown 1 (DG... 52 1e-004
gb|BG103195.1|BG103195 RHIZ2_19_D03.g1_A003 Rhizome2 (RHIZ2... 52 1e-004
gb|BG103368.1|BG103368 RHIZ2_19_D03.b1_A003 Rhizome2 (RHIZ2... 52 1e-004
gb|BG557547.1|BG557547 EM1_54_G11.b1_A002 Embryo 1 (EM1) So... 52 1e-004
gb|BG557655.1|BG557655 EM1_54_G11.g1_A002 Embryo 1 (EM1) So... 52 1e-004
gb|BG559253.1|BG559253 RHIZ2_52_E08.b1_A003 Rhizome2 (RHIZ2... 52 1e-004
gb|BG559406.1|BG559406 RHIZ2_54_D10.b1_A003 Rhizome2 (RHIZ2... 52 1e-004
gb|BG559614.1|BG559614 RHIZ2_71_B07.g1_A003 Rhizome2 (RHIZ2... 52 1e-004
gb|BG947962.1|BG947962 IP1_7_F07.b1_A002 Immature pannicle ... 52 1e-004
gb|BE363001.2|BE363001 DG1_92_G01.g1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|BE362957.2|BE362957 DG1_92_G01.b1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|CD236128.1|CD236128 SS1_32_B09.b1_A012 Salt-stressed see... 52 1e-004
gb|CD236225.1|CD236225 SS1_32_B09.g1_A012 Salt-stressed see... 52 1e-004
gb|CD236365.1|CD236365 SS1_33_B09.g1_A012 Salt-stressed see... 52 1e-004
gb|CD429497.1|CD429497 ETH1_4_H03.g1_A002 Ethylene-treated ... 52 1e-004
gb|CD430207.1|CD430207 ETH1_17_H03.g1_A002 Ethylene-treated... 52 1e-004
gb|CD430220.1|CD430220 ETH1_17_C09.g1_A002 Ethylene-treated... 52 1e-004
gb|CD462624.1|CD462624 ETH1_38_E02.g1_A002 Ethylene-treated... 52 1e-004
gb|CF428098.1|CF428098 PH1_12_A02.g1_A002 Phosphorous-defic... 52 1e-004
gb|CF429208.1|CF429208 PH1_20_C03.g1_A002 Phosphorous-defic... 52 1e-004
gb|CF431071.1|CF431071 NIT1_4_G11.g1_A002 Nitrogen-deficien... 52 1e-004
gb|CF432712.1|CF432712 NIT1_18_A03.g1_A002 Nitrogen-deficie... 52 1e-004
gb|CN137489.1|CN137489 OX1_57_D04.g1_A002 Oxidatively-stres... 52 1e-004
gb|CN146262.1|CN146262 WOUND1_39_D11.b1_A002 Wounded leaves... 52 1e-004
gb|CN146340.1|CN146340 WOUND1_39_D11.g1_A002 Wounded leaves... 52 1e-004
gb|CX612764.1|CX612764 GABR1_4_G09.b1_A002 GA- or brassinol... 52 1e-004
gb|CX612853.1|CX612853 GABR1_4_G09.g1_A002 GA- or brassinol... 52 1e-004
gb|CW180236.1|CW180236 104_594_11160530_116_36635_003 Sorgh... 50 5e-004
gb|AW923123.1|AW923123 DG1_49_A09.b1_A002 Dark Grown 1 (DG1... 44 0.029
gb|BG102197.1|BG102197 RHIZ2_22_A05.b1_A003 Rhizome2 (RHIZ2... 44 0.029
gb|BG560168.1|BG560168 RHIZ2_71_B07.b1_A003 Rhizome2 (RHIZ2... 44 0.029
gb|CW281345.1|CW281345 104_757_11408125_116_35461_063 Sorgh... 42 0.12
gb|AW677718.1|AW677718 WS1_10_G02.g1_A002 Water-stressed 1 ... 42 0.12
gb|BE357946.1|BE357946 DG1_23_B11.b1_A002 Dark Grown 1 (DG1... 42 0.12
gb|BE358009.1|BE358009 DG1_23_B11.g1_A002 Dark Grown 1 (DG1... 42 0.12
gb|BE361851.1|BE361851 DG1_82_E02.g1_A002 Dark Grown 1 (DG1... 42 0.12
gb|BE592267.1|BE592267 WS1_90_E10.g1_A002 Water-stressed 1 ... 42 0.12
gb|BE593816.1|BE593816 WS1_102_F10.g1_A002 Water-stressed 1... 42 0.12
gb|BE594133.1|BE594133 WS1_102_F10.b1_A002 Water-stressed 1... 42 0.12
gb|BF421069.1|BF421069 FM1_6_A02.g1_A003 Floral-Induced Mer... 42 0.12
gb|BF480740.1|BF480740 FM1_14_A01.g1_A003 Floral-Induced Me... 42 0.12
gb|BF481849.1|BF481849 FM1_22_B08.g1_A003 Floral-Induced Me... 42 0.12
gb|BF585507.1|BF585507 FM1_23_C12.g1_A003 Floral-Induced Me... 42 0.12
gb|BF587055.1|BF587055 FM1_32_F12.g1_A003 Floral-Induced Me... 42 0.12
gb|BF587666.1|BF587666 FM1_39_B12.g1_A003 Floral-Induced Me... 42 0.12
gb|BG051346.1|BG051346 FM1_55_C12.g1_A003 Floral-Induced Me... 42 0.12
gb|BG240969.1|BG240969 OV1_40_E08.g1_A002 Ovary 1 (OV1) Sor... 42 0.12
gb|BG241292.1|BG241292 OV1_40_E08.b1_A002 Ovary 1 (OV1) Sor... 42 0.12
gb|BG356422.1|BG356422 EM1_22_D03.g1_A002 Embryo 1 (EM1) So... 42 0.12
gb|BG356490.1|BG356490 EM1_23_B08.g1_A002 Embryo 1 (EM1) So... 42 0.12
gb|BG464777.1|BG464777 EM1_34_A06.g1_A002 Embryo 1 (EM1) So... 42 0.12
gb|BG556573.1|BG556573 EM1_38_H12.g1_A002 Embryo 1 (EM1) So... 42 0.12
gb|BG556704.1|BG556704 EM1_40_E07.g1_A002 Embryo 1 (EM1) So... 42 0.12
gb|BI074922.1|BI074922 IP1_17_E10.g1_A002 Immature pannicle... 42 0.12
gb|BI139648.1|BI139648 IP1_47_C12.g1_A002 Immature pannicle... 42 0.12
gb|CD207648.1|CD207648 HS1_34_F01.b1_A012 Heat-shocked seed... 42 0.12
gb|CD207852.1|CD207852 HS1_35_C03.b1_A012 Heat-shocked seed... 42 0.12
gb|CD424353.1|CD424353 SA1_5_C12.b1_A002 Salicylic acid-tre... 42 0.12
gb|CD424618.1|CD424618 SA1_8_F01.g1_A002 Salicylic acid-tre... 42 0.12
gb|CD426188.1|CD426188 SA1_19_B01.b1_A002 Salicylic acid-tr... 42 0.12
gb|CD430493.1|CD430493 ETH1_19_A09.b1_A002 Ethylene-treated... 42 0.12
gb|CF071896.1|CF071896 FE1_19_D09.b1_A002 Iron-deficient se... 42 0.12
gb|CF073265.1|CF073265 FE1_22_A10.b1_A002 Iron-deficient se... 42 0.12
gb|CF427245.1|CF427245 PH1_4_B04.g1_A002 Phosphorous-defici... 42 0.12
gb|CF428389.1|CF428389 PH1_14_C07.g1_A002 Phosphorous-defic... 42 0.12
gb|CF480944.1|CF480944 POL1_69_C01.b1_A002 Pollen Sorghum b... 42 0.12
gb|CF487985.1|CF487985 POL1_47_C07.b1_A002 Pollen Sorghum b... 42 0.12
gb|CF489738.1|CF489738 POL1_59_H02.b1_A002 Pollen Sorghum b... 42 0.12
gb|CN129211.1|CN129211 RHOH1_34_D06.b3_A002 Acid- and alkal... 42 0.12
gb|CN146250.1|CN146250 WOUND1_39_C10.b1_A002 Wounded leaves... 42 0.12
gb|CN146327.1|CN146327 WOUND1_39_C10.g1_A002 Wounded leaves... 42 0.12
gb|CN148672.1|CN148672 WOUND1_58_B12.b1_A002 Wounded leaves... 42 0.12
gb|CX613456.1|CX613456 GABR1_8_F08.b1_A002 GA- or brassinol... 42 0.12
gb|CX622619.1|CX622619 GABR1_65_B05.b1_A002 GA- or brassino... 42 0.12
gb|BZ334438.1|BZ334438 hx79d07.g1 WGS-SbicolorF (JM107 adap... 40 0.46
gb|CL150349.1|CL150349 104_332_10778468_116_31358_020 Sorgh... 40 0.46
gb|CL154356.1|CL154356 104_339_10781355_116_31372_219 Sorgh... 40 0.46
gb|CW029730.1|CW029730 104_257_10499842_116_30402 Sorghum m... 40 0.46
gb|CW116429.1|CW116429 104_492_11107112_116_34607_030 Sorgh... 40 0.46
gb|CW141897.1|CW141897 104_533_11136557_116_34938_031 Sorgh... 40 0.46
gb|CW214991.1|CW214991 104_647_11194305_148_37166_045 Sorgh... 40 0.46
gb|CW275834.1|CW275834 104_749_11405170_148_35393_043 Sorgh... 40 0.46
gb|CW399566.1|CW399566 fsbb001f089h13f0 Sorghum methylation... 40 0.46
gb|CW417888.1|CW417888 fsbb001f121b18f0 Sorghum methylation... 40 0.46
gb|CW417889.1|CW417889 fsbb001f121b18k0 Sorghum methylation... 40 0.46
gb|CW424546.1|CW424546 fsbb001f134o23k0 Sorghum methylation... 40 0.46
gb|AI724844.1|AI724844 RHIZ1_9_H07.y2_A001 Rhizome1 (RHIZ1)... 40 0.46
gb|AW677749.1|AW677749 WS1_10_C02.g1_A002 Water-stressed 1 ... 40 0.46
gb|BG463928.1|BG463928 EM1_52_E12.b1_A002 Embryo 1 (EM1) So... 40 0.46
gb|BI351350.1|BI351350 IP1_70_D12.b1_A002 Immature pannicle... 40 0.46
gb|CD207957.1|CD207957 HS1_36_H10.b1_A012 Heat-shocked seed... 40 0.46
gb|CD209383.1|CD209383 HS1_42_E08.b1_A012 Heat-shocked seed... 40 0.46
gb|CD210694.1|CD210694 HS1_49_E01.b1_A012 Heat-shocked seed... 40 0.46
gb|CD224485.1|CD224485 CCC1_34_F04.b1_A007 Callus culture/c... 40 0.46
gb|CD226030.1|CD226030 CCC1_43_D11.b1_A007 Callus culture/c... 40 0.46
gb|CF434046.1|CF434046 NIT1_31_F06.g1_A002 Nitrogen-deficie... 40 0.46
gb|CF480857.1|CF480857 POL1_68_H08.b1_A002 Pollen Sorghum b... 40 0.46
gb|CN129452.1|CN129452 RHOH1_35_B07.g1_A002 Acid- and alkal... 40 0.46
>gb|CN138077.1|CN138077 OX1_61_C04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_C04_A002 5', mRNA sequence
Length = 809
Score = 985 bits (497), Expect = 0.0
Identities = 593/625 (94%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 185 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 244
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 304
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 305 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 364
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 424
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 484
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 485 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 544
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcg 593
| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 545 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgcc 604
Query: 594 gacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactac 653
||| || || | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 605 gacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactac 664
Query: 654 ctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgac 713
|||| ||||||||| ||||| || |||||||||| || || ||||||||||||||||||
Sbjct: 665 ctcaactaccacgaccggctgctcaagctggtgaagctggggggcctcatcggctacgac 724
Query: 714 aacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatc 773
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 725 aacacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatc 784
Query: 774 cgcttctaccgcgacttcgtcctcg 798
|||||||||||||||||||| ||||
Sbjct: 785 cgcttctaccgcgacttcgtgctcg 809
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 104 gcactgcccgcaatggccaccacggcgacc 133
>gb|CN127238.1|CN127238 RHOH1_21_G07.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G07_A002 5', mRNA sequence
Length = 859
Score = 963 bits (486), Expect = 0.0
Identities = 581/613 (94%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 179 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 238
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 298
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 299 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 358
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 418
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 419 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 478
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 479 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 538
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcg 593
| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 539 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgcc 598
Query: 594 gacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactac 653
||| || || | ||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 599 gacgagaaggaccacgggtcgttcgacttcgtcttcgtggacgccgacnaggacaactac 658
Query: 654 ctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgac 713
|||| ||||||||| ||||| || |||||||||| || || ||||||||||||||||||
Sbjct: 659 ctcaactaccacgaccggctgctcaagctggtgaagctggggggcctcatcggctacgac 718
Query: 714 aacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatc 773
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 719 aacacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatc 778
Query: 774 cgcttctaccgcg 786
|||||||||||||
Sbjct: 779 cgcttctaccgcg 791
Score = 119 bits (60), Expect = 6e-025
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 826 accgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtca 885
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 786 accgcgtcgagatctgccagctccccgtcggcgacggcgtcaccctctgccgccgcgtca 845
Query: 886 agtg 889
||||
Sbjct: 846 agtg 849
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 98 gcactgcccgcaatggccaccacggcgacc 127
>gb|CF428636.1|CF428636 PH1_9_G09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_9_G09_A002 5', mRNA sequence
Length = 756
Score = 868 bits (438), Expect = 0.0
Identities = 537/569 (94%), Gaps = 1/569 (0%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 188 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 247
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 307
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 308 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 367
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 427
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 428 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 487
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 488 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 547
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcg 593
| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 548 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgcc 607
Query: 594 gacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactac 653
||| || || | ||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 608 gacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacnaggacaactac 667
Query: 654 ctcagctaccacgagcggctcctgaagctggtg-aggcccggcggcctcatcggctacga 712
|||| ||||||||| ||||| || ||||||||| | || || |||||||||||||||||
Sbjct: 668 ctcaactaccacgaccggctgctcaagctggtgaaagctggggggcctcatcggctacga 727
Query: 713 caacacgctgtggaacggctccgtcgtgc 741
||||||||||||||||||||| |||||||
Sbjct: 728 caacacgctgtggaacggctctgtcgtgc 756
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 107 gcactgcccgcaatggccaccacggcgacc 136
>gb|CF479933.1|CF479933 POL1_62_E11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_E11_A002 5', mRNA sequence
Length = 651
Score = 813 bits (410), Expect = 0.0
Identities = 552/592 (93%), Gaps = 7/592 (1%)
Strand = Plus / Plus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 61 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctccgc 120
Query: 297 gagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttc 356
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 121 gagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcagttc 180
Query: 357 ctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacacc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacacc 240
Query: 417 ggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatg 476
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 ggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggccatg 300
Query: 477 gacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggc 536
|||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| | |
Sbjct: 301 gacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtcgcc 360
Query: 537 cacaag-atc--gacttccgcgagggcccc-gcgctccccgtcctggacgacctcgt-gg 591
|||||| ||| |||||||||||||||||| |||||||||||||| ||||||||| | |
Sbjct: 361 cacaagaatcnngacttccgcgagggccccngcgctccccgtcctcgacgacctcatcgn 420
Query: 592 cggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaact 651
| ||| || || | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 421 ccgacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaact 480
Query: 652 acctcagctaccacgagcggctcctgaagctggtgaggcc-cggcggcctcatcggctac 710
|||||| ||||||||| ||||| || ||||||||| ||| || |||||||||||||||
Sbjct: 481 acctcaactaccacgaccggctgct-cagctggtgaagcctggggggcctcatcggctac 539
Query: 711 gacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtac 770
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 540 gacaacacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtac 599
Query: 771 atccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccg 822
||||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct: 600 atccgcttctaccgcgacttcgtgctcgtcctcaacaaggcgctcgccgccg 651
>gb|CN123933.1|CN123933 RHOH1_1_D01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D01_A002 5', mRNA sequence
Length = 702
Score = 803 bits (405), Expect = 0.0
Identities = 476/500 (95%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 196 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 255
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 315
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 316 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 375
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 435
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 436 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 495
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 496 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 555
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcg 593
| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 556 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgcc 615
Query: 594 gacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactac 653
||| || || | ||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 616 gacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacnaggacaactac 675
Query: 654 ctcagctaccacgagcggct 673
|||| ||||||||| |||||
Sbjct: 676 ctcaactaccacgaccggct 695
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 115 gcactgcccgcaatggccaccacggcgacc 144
>gb|CF433879.1|CF433879 NIT1_30_C03.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_C03_A002 5', mRNA sequence
Length = 670
Score = 793 bits (400), Expect = 0.0
Identities = 475/500 (95%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 166 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 225
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 285
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 286 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 345
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 405
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 406 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacggtcttggcc 465
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 466 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 525
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcg 593
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 526 acccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgcc 585
Query: 594 gacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactac 653
||| || || | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 586 gacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactac 645
Query: 654 ctcagctaccacgagcggct 673
|||| ||||||||| |||||
Sbjct: 646 ctcaactaccacgaccggct 665
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 85 gcactgcccgcaatggccaccacggcgacc 114
>gb|CD229208.1|CD229208 CCC1_13_F11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_F11_A007 5', mRNA sequence
Length = 653
Score = 759 bits (383), Expect = 0.0
Identities = 446/467 (95%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 187 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 246
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 306
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 307 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 366
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 426
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 427 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 486
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 487 atggacatcaaccgcgagaactacgagctgggcctaccctgcatcgagaaggccggcgtc 546
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcg 593
| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 547 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgcc 606
Query: 594 gacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccga 640
||| || || | ||||||||||||||||||| |||||||||||||||
Sbjct: 607 gacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccga 653
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 106 gcactgcccgcaatggccaccacggcgacc 135
>gb|BI141003.1|BI141003 IP1_41_H11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 718 bits (362), Expect = 0.0
Identities = 401/414 (96%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 181 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 240
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 300
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 301 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 360
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 420
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 421 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 480
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 481 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 540
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctc 587
| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 541 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctc 594
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 100 gcactgcccgcaatggccaccacggcgacc 129
>gb|CD429608.1|CD429608 ETH1_14_C02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_C02_A002 5', mRNA sequence
Length = 604
Score = 718 bits (362), Expect = 0.0
Identities = 401/414 (96%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 184 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 243
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 303
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 304 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 363
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 423
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 424 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 483
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 484 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 543
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctc 587
| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 544 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctc 597
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 103 gcactgcccgcaatggccaccacggcgacc 132
>gb|CF432761.1|CF432761 NIT1_18_G06.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_G06_A002 5', mRNA sequence
Length = 603
Score = 718 bits (362), Expect = 0.0
Identities = 401/414 (96%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 185 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 244
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 304
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 305 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 364
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 424
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 484
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 485 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 544
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctc 587
| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 545 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctc 598
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 104 gcactgcccgcaatggccaccacggcgacc 133
>gb|BI140992.1|BI140992 IP1_41_G12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 593
Score = 716 bits (361), Expect = 0.0
Identities = 400/413 (96%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 181 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 240
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 300
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 301 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 360
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 420
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 421 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 480
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 481 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 540
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacct 586
| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 541 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacct 593
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 100 gcactgcccgcaatggccaccacggcgacc 129
>gb|CF427278.1|CF427278 PH1_4_H04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_H04_A002 5', mRNA sequence
Length = 600
Score = 716 bits (361), Expect = 0.0
Identities = 400/413 (96%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 188 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 247
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 307
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 308 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 367
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 427
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 428 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 487
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 488 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 547
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacct 586
| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 548 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacct 600
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 107 gcactgcccgcaatggccaccacggcgacc 136
>gb|CN135765.1|CN135765 OX1_38_G08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_G08_A002 5', mRNA sequence
Length = 553
Score = 708 bits (357), Expect = 0.0
Identities = 396/409 (96%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 145 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 204
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 264
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 265 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 324
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 384
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 444
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 445 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 504
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacg 582
| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacg 553
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 64 gcactgcccgcaatggccaccacggcgacc 93
>gb|BE360219.1|BE360219 DG1_62_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 706 bits (356), Expect = 0.0
Identities = 392/404 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 180 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 239
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 299
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 300 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 359
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 419
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 420 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 479
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 480 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 539
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcct 577
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gcccacaagatcgacttccgcgagggccccgcgctccccgtcct 583
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 99 gcactgcccgcaatggccaccacggcgacc 128
>gb|CD428979.1|CD428979 ETH1_1_A03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_1_A03_A002 5', mRNA sequence
Length = 586
Score = 696 bits (351), Expect = 0.0
Identities = 387/399 (96%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 188 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 247
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 307
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 308 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 367
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 427
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 428 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 487
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 488 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 547
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctcccc 572
| |||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcccacaagatcgacttccgcgagggccccgcgctcccc 586
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 107 gcactgcccgcaatggccaccacggcgacc 136
>gb|BE125749.1|BE125749 DG1_55_H11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 682 bits (344), Expect = 0.0
Identities = 416/440 (94%)
Strand = Plus / Plus
Query: 248 ggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatcaccgc 307
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9 ggacacgagcgtgtacccgcgggagccggagagcatgaaggagctccgcgagatcaccgc 68
Query: 308 caagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgct 367
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 69 caagcacccatggaacctgatgacgacctccgccgacgaggggcagttcctcaacatgct 128
Query: 368 catcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 129 catcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactccct 188
Query: 428 cctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatcaaccg 487
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cctcgccaccgcgctcgctctcccggaggacggcacgatcttggccatggacatcaaccg 248
Query: 488 cgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaagatcga 547
||||||||||||||| ||||| ||||||||| | ||||||||||| | ||||||||||||
Sbjct: 249 cgagaactacgagctgggcctgccctgcatcgagaaggccggcgtcgcccacaagatcga 308
Query: 548 cttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggagcagca 607
|||||||||||||||||||||||||||||| ||||||||| | || ||| || || | ||
Sbjct: 309 cttccgcgagggccccgcgctccccgtcctcgacgacctcatcgccgacgagaagaacca 368
Query: 608 cgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacga 667
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 369 cgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccacga 428
Query: 668 gcggctcctgaagctggtga 687
||||| || ||||||||||
Sbjct: 429 ccggctgctcaagctggtga 448
>gb|CN133810.1|CN133810 OX1_18_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_18_A10_A002 5', mRNA sequence
Length = 555
Score = 658 bits (332), Expect = 0.0
Identities = 379/397 (95%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 159 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 218
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 278
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
||||||||||||| ||| || |||||||||||||||||||||||||||||||| |||
Sbjct: 279 cgcgagatcaccgnnaagnnnccntggaacctgatgaccacctccgccgacgaggggcag 338
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 398
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 399 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 458
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 459 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 518
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctcc 570
| ||||||||||||||||||||||||| |||||||||
Sbjct: 519 gcccacaagatcgacttccgcgagggcnccgcgctcc 555
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 78 gcactgcccgcaatggccaccacggcgacc 107
>gb|CN127149.1|CN127149 RHOH1_21_G07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G07_A002 3', mRNA sequence
Length = 819
Score = 656 bits (331), Expect = 0.0
Identities = 415/443 (93%)
Strand = Plus / Plus
Query: 344 cgagggccagttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagat 403
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaggggcagttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagat 60
Query: 404 cggcgtctacaccggctactcgctcctcgccaccgcgctcgcactcccggaggacggcac 463
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 61 cggcgtctacaccggctactccctcctcgccaccgcgctcgctctcccggaggacggcac 120
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||
Sbjct: 121 gatcttggccatggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaa 180
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 181 ggccggcgtcgcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacga 240
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|||| | || ||| || || | ||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 cctcatcgccgacgagaaggaccacgggtcgttcgacttcgtcttcgtggacgccgacaa 300
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||| ||||| || |||||||||| || || ||||||||
Sbjct: 301 ggacaactacctcaactaccacgaccggctgctcaagctggtgaagctggggggcctcat 360
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 361 cggctacgacaacacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcg 420
Query: 764 caagtacatccgcttctaccgcg 786
|||||||||||||||||||||||
Sbjct: 421 caagtacatccgcttctaccgcg 443
Score = 119 bits (60), Expect = 6e-025
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 826 accgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtca 885
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 438 accgcgtcgagatctgccagctccccgtcggcgacggcgtcaccctctgccgccgcgtca 497
Query: 886 agtg 889
||||
Sbjct: 498 agtg 501
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 554 ccaatcatatcgtagacgacgcgcagcattaa 585
>gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 449
Score = 652 bits (329), Expect = 0.0
Identities = 419/449 (93%)
Strand = Plus / Plus
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcgctctcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 60
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||||||||| | ||||||||||| | |||||||||||||||||||||||||
Sbjct: 61 ctgggcctgccctgcatcgagaaggccggcgtcgcccacaagatcgacttccgcgagggc 120
Query: 561 cccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgac 620
||||||||||||||||| ||||||||| | || ||| || || | |||||||||||||||
Sbjct: 121 cccgcgctccccgtcctcgacgacctcatcgccgacgagaagaaccacgggtcgttcgac 180
Query: 621 ttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcctgaag 680
|||| |||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct: 181 ttcgtcttcgtggacgccgacaaggacaactacctcaactaccacgagcggctgctcaag 240
Query: 681 ctggtgaggcccggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtg 740
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctggtgaagctggggggcctcatcggctacgacaacacgctgtggaacggctccgtcgtg 300
Query: 741 ctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgcc 800
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 301 ctccccgacgacgcccccatgcgcaagtacatccgcttctaccgcgacttcgtgctcgtc 360
Query: 801 ctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgac 860
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 361 ctcaacaaggcgctcgccgccgacgagcgcgtcgagatctgccagctccccgtcggcgac 420
Query: 861 ggcgtcacgctctgccgccgcgtcaagtg 889
|||||||| ||||||||||||||||||||
Sbjct: 421 ggcgtcaccctctgccgccgcgtcaagtg 449
>gb|BG357173.1|BG357173 OV2_10_F11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 534
Score = 620 bits (313), Expect = e-176
Identities = 337/345 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 182 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 241
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 301
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 302 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 361
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 421
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 422 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 481
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatc 518
||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 482 atggacatcaaccgcgagaactacgagctgggcctgccctgcatc 526
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 101 gcactgcccgcaatggccaccacggcgacc 130
>gb|BG465738.1|BG465738 RHIZ2_48_A08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 519
Score = 620 bits (313), Expect = e-176
Identities = 337/345 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 175 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 234
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 294
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 295 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 354
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 414
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 415 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 474
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatc 518
||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 475 atggacatcaaccgcgagaactacgagctgggcctgccctgcatc 519
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 106 gcactgcccgcaatggccaccacggcgacc 135
>gb|BI076233.1|BI076233 IP1_27_E07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 526
Score = 620 bits (313), Expect = e-176
Identities = 337/345 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 182 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 241
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 301
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 302 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 361
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 421
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 422 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 481
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatc 518
||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 482 atggacatcaaccgcgagaactacgagctgggcctgccctgcatc 526
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 101 gcactgcccgcaatggccaccacggcgacc 130
>gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_C04_A002 3', mRNA sequence
Length = 716
Score = 589 bits (297), Expect = e-166
Identities = 390/421 (92%)
Strand = Plus / Plus
Query: 469 tggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccg 528
|||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||
Sbjct: 1 tggccatggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccg 60
Query: 529 gcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcg 588
|||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 gcgtcgcccacaagatcgacttccgcgagggccccgcgctccccgtccttgacgacctca 120
Query: 589 tggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggaca 648
| || ||| || || | ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 tcgccgacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggaca 180
Query: 649 actacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggct 708
||||||||| ||||||||| ||||| || |||||||||| || || |||||||||||||
Sbjct: 181 actacctcaactaccacgaccggctgctcaagctggtgaagctggggggcctcatcggct 240
Query: 709 acgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagt 768
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 241 acgacaacacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagt 300
Query: 769 acatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgacc 828
||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |
Sbjct: 301 acatccgcttctaccgcgacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagc 360
Query: 829 gcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagt 888
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 361 gcgtcgagatctgccagctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagt 420
Query: 889 g 889
|
Sbjct: 421 g 421
Score = 56.0 bits (28), Expect = 8e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||| ||||
Sbjct: 474 ccaatcatatcgtagacgacgcgcagccttaa 505
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1039 tggctctttcttggccctgta 1059
|||||||||||||||||||||
Sbjct: 529 tggctctttcttggccctgta 549
>gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_F12_A002 5', mRNA sequence
Length = 649
Score = 587 bits (296), Expect = e-166
Identities = 392/424 (92%)
Strand = Plus / Minus
Query: 466 tcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaagg 525
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||
Sbjct: 649 tcttggccatggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaagg 590
Query: 526 ccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacc 585
||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 589 ccggcgtcgcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacc 530
Query: 586 tcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaagg 645
|| | || ||| || || | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 529 tcatcgccgacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaagg 470
Query: 646 acaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcg 705
|||||||||||| ||||||||| ||||| || ||||||| || || || ||||||||||
Sbjct: 469 acaactacctcaactaccacgaccggctgctcaagctggcgaagctggggggcctcatcg 410
Query: 706 gctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgca 765
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 409 gctacgacaacacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgca 350
Query: 766 agtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacg 825
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct: 349 agtacatccgcttctaccgcgacttcgtgctcgtcctcaacaaggcgctcgccgccgacg 290
Query: 826 accgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtca 885
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 289 agcgcgtcgagatctgccagctccccgtcggcgacggcgtcaccctctgccgccgcgtca 230
Query: 886 agtg 889
||||
Sbjct: 229 agtg 226
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 173 ccaatcatatcgtagacgacgcgcagcattaa 142
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1039 tggctctttcttggccctgta 1059
|||||||||||||||||||||
Sbjct: 119 tggctctttcttggccctgta 99
>gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_C05_A002 5', mRNA sequence
Length = 826
Score = 575 bits (290), Expect = e-162
Identities = 386/418 (92%)
Strand = Plus / Plus
Query: 472 ccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcg 531
||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||
Sbjct: 357 ccatggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcg 416
Query: 532 tgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtgg 591
| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 417 tcgcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcg 476
Query: 592 cggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaact 651
| ||| || || | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 477 ccgacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaact 536
Query: 652 acctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacg 711
|||||| ||||||||| ||||| || |||||||||| || || ||||||||||||||||
Sbjct: 537 acctcaactaccacgaccggctgctcaagctggtgaagctggggggcctcatcggctacg 596
Query: 712 acaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtaca 771
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 597 acaacacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtaca 656
Query: 772 tccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcg 831
|||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct: 657 tccgcttctaccgcgacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcg 716
Query: 832 tcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 717 tcgagatctgccagctccccgtcggcgacagcgtcaccctctgccgccgcgtcaagtg 774
Score = 410 bits (207), Expect = e-112
Identities = 222/227 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 137 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 196
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 256
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 257 cgcgagatcaccgccgagcacccatggaacctgatgacgacctccgccgacgaggggcag 316
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatgga 400
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatgga 363
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 56 gcactgcccgcaatggccaccacggcgacc 85
>gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 573 bits (289), Expect = e-161
Identities = 382/413 (92%)
Strand = Plus / Plus
Query: 477 gacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggc 536
|||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| | |
Sbjct: 1 gacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtcgcc 60
Query: 537 cacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggac 596
||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||
Sbjct: 61 cacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgccgac 120
Query: 597 aaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctc 656
|| || | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 gagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctc 180
Query: 657 agctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaac 716
| ||||||||| ||||| || |||||||||| || || |||||||||||||||||||||
Sbjct: 181 aactaccacgaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaac 240
Query: 717 acgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgc 776
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 241 acgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccgc 300
Query: 777 ttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgag 836
||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 301 ttctaccgcgacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcgag 360
Query: 837 atctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 atctgccagctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagtg 413
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 466 ccaatcatatcgtagacgacgcgcagcattaa 497
>gb|CN132666.1|CN132666 OX1_7_B07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_B07_A002 5', mRNA sequence
Length = 773
Score = 559 bits (282), Expect = e-157
Identities = 300/306 (98%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 191 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 250
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 310
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 311 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 370
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 430
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 431 accggctactccctcctcgccaccgcgctcgctctcccggaggacggcacgatcttggcc 490
Query: 474 atggac 479
||||||
Sbjct: 491 atggac 496
Score = 387 bits (195), Expect = e-105
Identities = 243/259 (93%)
Strand = Plus / Plus
Query: 631 tggacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggc 690
||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||| ||
Sbjct: 492 tggacgccgacaaggacaactacctcaactaccacgaccggctgctcaagctggtgaagc 551
Query: 691 ccggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacg 750
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 552 tggggggcctcatcggctacgacaacacgctgtggaacggctctgtcgtgctccccgacg 611
Query: 751 acgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcg 810
|||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct: 612 acgcccccatgcgcaagtacatccgcttctaccgcgacttcgtgctcgtcctcaacaagg 671
Query: 811 cgctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgc 870
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 672 cgctcgccgccgacgagcgcgtcgagatctgccagctccccgtcggcgacggcgtcaccc 731
Query: 871 tctgccgccgcgtcaagtg 889
|||||||||||||||||||
Sbjct: 732 tctgccgccgcgtcaagtg 750
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 110 gcactgcccgcaatggccaccacggcgacc 139
>gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_C05_A002 3', mRNA sequence
Length = 752
Score = 543 bits (274), Expect = e-152
Identities = 382/418 (91%)
Strand = Plus / Plus
Query: 472 ccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcg 531
||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||
Sbjct: 111 ccatggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcg 170
Query: 532 tgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtgg 591
| | |||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |
Sbjct: 171 tcgcccacaagatcgacttccgggagggccccgcgctccccgtccttgacgacctcatcg 230
Query: 592 cggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaact 651
| ||| || || | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 231 ccgacgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaact 290
Query: 652 acctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacg 711
|||||| ||||||||| ||||| || |||||||||| || || ||||||||||||||||
Sbjct: 291 acctcaactaccacgaccggctgctcaagctggtgaagctggggggcctcatcggctacg 350
Query: 712 acaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtaca 771
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 351 acaacacgctgtggaacggttctgtcgtgctccccgacgacgcccccatgcgcaagtaca 410
Query: 772 tccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcg 831
||||||||||||| |||||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct: 411 tccgcttctaccgggacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcg 470
Query: 832 tcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 471 tcgagatctcccagctccccgtcggggacggcgtcaccctctgccgccgcgtcaagtg 528
Score = 184 bits (93), Expect = 1e-044
Identities = 111/117 (94%)
Strand = Plus / Plus
Query: 284 gaaggagctgcgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccga 343
||||||||| ||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gaaggagctccgcgagatctcccccaagcacccatggaacctgatgacgacctccgccga 60
Query: 344 cgagggccagttcctcaacatgctcatcaagctcatcggcgccaagaagaccatgga 400
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 cgaggggcagttcctcaacatgctcatcaagctcatgggcgccaagaagaccatgga 117
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 580 ccaatcatatcgtagacgacgcgcagcattaa 611
>gb|BG947952.1|BG947952 IP1_7_E07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 468
Score = 521 bits (263), Expect = e-146
Identities = 281/287 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 182 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 241
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 301
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 302 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 361
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 421
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacgg 460
||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 422 accggctactccctcctcgccaccgcgctcgctctcccggaggacgg 468
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 101 gcactgcccgcaatggccaccacggcgacc 130
>gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_C02_A002 3', mRNA sequence
Length = 604
Score = 513 bits (259), Expect = e-143
Identities = 349/379 (92%)
Strand = Plus / Plus
Query: 511 cctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctcc 570
|||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgcatcgagaaggccggcgtcgcccacaagatcgacttccgcgagggccccgcgctcc 60
Query: 571 ccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcg 630
||||||| ||||||||| | || ||| || || | ||||||||||||||||||| |||||
Sbjct: 61 ccgtcctcgacgacctcatcgccgacgagaagaaccacgggtcgttcgacttcgtcttcg 120
Query: 631 tggacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggc 690
||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||| ||
Sbjct: 121 tggacgccgacaaggacaactacctcaactaccacgaccggctgctcaagctggtgaagc 180
Query: 691 ccggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacg 750
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 181 tggggggcctcatcggctacgacaacacgctgtggaacggctctgtcgtgctccccgacg 240
Query: 751 acgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcg 810
|||| ||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
Sbjct: 241 acgcccccatgcgcaagtacgtccgcttctaccgcgacttcgtgctcgtcctcaacaagg 300
Query: 811 cgctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgc 870
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 cgctcgccgccgacgagcgcgtcgagatctgccagctccccgtcggcgacggcgtcaccc 360
Query: 871 tctgccgccgcgtcaagtg 889
|||||||||||||||||||
Sbjct: 361 tctgccgccgcgtcaagtg 379
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 432 ccaatcatatcgtagacgacgcgcagcattaa 463
>gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_H04_A002 3', mRNA sequence
Length = 573
Score = 504 bits (254), Expect = e-140
Identities = 329/354 (92%)
Strand = Plus / Plus
Query: 536 ccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcgga 595
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | || ||
Sbjct: 1 ccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgccga 60
Query: 596 caaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacct 655
| || || | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 cgagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacct 120
Query: 656 cagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaa 715
|| ||||||||| ||||| || |||||||||| || || ||||||||||||||||||||
Sbjct: 121 caactaccacgaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaa 180
Query: 716 cacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccg 775
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 181 cacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccg 240
Query: 776 cttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcga 835
|||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 241 cttctaccgcgacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcga 300
Query: 836 gatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 gatctgccagctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagtg 354
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 407 ccaatcatatcgtagacgacgcgcagcattaa 438
>gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_G06_A002 3', mRNA sequence
Length = 610
Score = 502 bits (253), Expect = e-140
Identities = 350/381 (91%), Gaps = 1/381 (0%)
Strand = Plus / Plus
Query: 510 ccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctc 569
||||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 4 ccctgcatcgagaaggccggcgtcgcccacaagatcgacttccgcgagggccccgcgctc 63
Query: 570 cccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttc 629
|||||||| ||||||||| | || ||| || || | ||||||||||||||||||| ||||
Sbjct: 64 cccgtcctcgacgacctcatcgccgacgagaagaaccacgggtcgttcgacttcgtcttc 123
Query: 630 gtggacgccgacaaggacaactacctcagctacc-acgagcggctcctgaagctggtgag 688
|||||||||||||||||||||||||||| ||||| |||| ||||| || ||||||||||
Sbjct: 124 gtggacgccgacaaggacaactacctcaactacccacgaccggctgctcaagctggtgaa 183
Query: 689 gcccggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccga 748
|| || |||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 184 gctggggggcctcatcggctacgacaacatgctgtggaacggctctgtcgtgctccccga 243
Query: 749 cgacgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacag 808
|||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 244 cgacgcccccatgcgcaagtacatccgcttctaccgcgacttcgtgctcgtcctcaacaa 303
Query: 809 cgcgctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcac 868
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggcgctcgccgccgacgagcgcgtcgagatctgccagctccccgtcggcgacggcgtcac 363
Query: 869 gctctgccgccgcgtcaagtg 889
||||||||||||||||||||
Sbjct: 364 cctctgccgccgcgtcaagtg 384
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 437 ccaatcatatcgtagacgacgcgcagcattaa 468
>gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 490 bits (247), Expect = e-136
Identities = 322/347 (92%)
Strand = Plus / Plus
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
||||||||||||||||||||||||||||||||||| ||||||||| | || ||| || ||
Sbjct: 1 atcgacttccgcgagggccccgcgctccccgtcctcgacgacctcatcgccgacgagaag 60
Query: 603 cagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctac 662
| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 61 aaccacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactac 120
Query: 663 cacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctg 722
||||| ||||| || |||||||||| || || |||||||||||||||||||||||||||
Sbjct: 121 cacgaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaacacgctg 180
Query: 723 tggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctac 782
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 tggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccgcttctac 240
Query: 783 cgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgc 842
||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 241 cgcgacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcgagatctgc 300
Query: 843 cagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 cagctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagtg 347
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 400 ccaatcatatcgtagacgacgcgcagcattaa 431
>gb|BG559522.1|BG559522 RHIZ2_55_G08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 439
Score = 476 bits (240), Expect = e-132
Identities = 255/260 (98%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 180 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 239
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 299
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 300 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 359
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 419
Query: 414 accggctactcgctcctcgc 433
||||||||||| ||||||||
Sbjct: 420 accggctactccctcctcgc 439
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 111 gcactgcccgcaatggccaccacggcgacc 140
>gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231851, DNA
sequence
Length = 649
Score = 428 bits (216), Expect = e-118
Identities = 267/284 (94%)
Strand = Plus / Minus
Query: 606 cacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccac 665
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 436 cacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccac 377
Query: 666 gagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
|| ||||| || |||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 376 gaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaacacgctgtgg 317
Query: 726 aacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgc 785
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 316 aacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccgcttctaccgc 257
Query: 786 gacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccag 845
|||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 256 gacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcgagatctgccag 197
Query: 846 ctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 196 ctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagtg 153
Score = 170 bits (86), Expect = 2e-040
Identities = 107/114 (93%)
Strand = Plus / Minus
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 649 atggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaaggccggcgtc 590
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctc 587
| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 589 gcccacaagatcgacttccgcgagggccccgcgctccccgtcctcgacgacctc 536
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 100 ccaatcatatcgtagacgacgcgcagcattaa 69
>gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 428 bits (216), Expect = e-118
Identities = 267/284 (94%)
Strand = Plus / Plus
Query: 606 cacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccac 665
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 94 cacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccac 153
Query: 666 gagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
|| ||||| || |||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 154 gaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaacacgctgtgg 213
Query: 726 aacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgc 785
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 214 aacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccgcttctaccgc 273
Query: 786 gacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccag 845
|||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 274 gacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcgagatctgccag 333
Query: 846 ctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 334 ctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagtg 377
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 430 ccaatcatatcgtagacgacgcgcagcattaa 461
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgag 347
||||||||||||| |||||||||||||||
Sbjct: 59 ggaacctgatgacgacctccgccgacgag 87
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1039 tggctctttcttggccctgta 1059
|||||||||||||||||||||
Sbjct: 484 tggctctttcttggccctgta 504
>gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_F11_A007 3', mRNA sequence
Length = 542
Score = 428 bits (216), Expect = e-118
Identities = 267/284 (94%)
Strand = Plus / Plus
Query: 606 cacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccac 665
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 17 cacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccac 76
Query: 666 gagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
|| ||||| || |||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 77 gaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaacacgctgtgg 136
Query: 726 aacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgc 785
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 137 aacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccgcttctaccgc 196
Query: 786 gacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccag 845
|||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 197 gacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcgagatctgccag 256
Query: 846 ctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 257 ctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagtg 300
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 353 ccaatcatatcgtagacgacgcgcagcattaa 384
>gb|BI098963.1|BI098963 IP1_35_E08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 406
Score = 404 bits (204), Expect = e-111
Identities = 216/220 (98%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 187 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 246
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 306
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 307 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 366
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaaga 393
||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttcctcaacatgctcatcaagctcatcggcgccaagaaga 406
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 106 gcactgcccgcaatggccaccacggcgacc 135
>gb|BE358306.1|BE358306 DG1_27_D04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 410
Score = 392 bits (198), Expect = e-107
Identities = 215/221 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 187 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 246
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 247 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaatgagctc 306
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 307 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 366
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagac 394
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttnctcaacatgctcatcaagctcatcggcgccaagaagac 407
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 106 gcactgcccgcaatggccaccacggcgacc 135
>gb|BE363151.1|BE363151 DG1_9_E08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 440
Score = 381 bits (192), Expect = e-103
Identities = 240/256 (93%)
Strand = Plus / Plus
Query: 606 cacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccac 665
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 185 cacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccac 244
Query: 666 gagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
|| ||||| || |||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 245 gaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaacacgctgtgg 304
Query: 726 aacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgc 785
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 305 aacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccgcttctaccgc 364
Query: 786 gacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccag 845
|||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 365 gacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcgagatctgccag 424
Query: 846 ctccccgtcggcgacg 861
||||||||||||||||
Sbjct: 425 ctccccgtcggcgacg 440
Score = 89.7 bits (45), Expect = 6e-016
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 272 gccggagagcatgaaggagctgcgcgagatcaccgccaagcacccatgg 320
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 gccggagagcatgaaggagctccgcgagatcaccgccaagcacccatgg 49
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgag 347
||||||||||||| |||||||||||||||
Sbjct: 150 ggaacctgatgacgacctccgccgacgag 178
>gb|AW282821.1|AW282821 LG1_305_H12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 375 bits (189), Expect = e-102
Identities = 237/253 (93%)
Strand = Plus / Plus
Query: 637 ccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcg 696
||||||||||||||||||||| ||||||||| ||||| || |||||||||| || || |
Sbjct: 1 ccgacaaggacaactacctcaactaccacgaccggctgctcaagctggtgaagctggggg 60
Query: 697 gcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgc 756
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 61 gcctcatcggctacgacaacacgctgtggaacggctctgtcgtgctccccgacgacgccc 120
Query: 757 ccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcg 816
||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct: 121 ccatgcgcaagtacatccgcttctaccgcgacttcgtgctcgtcctcaacaaggcgctcg 180
Query: 817 ccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgcc 876
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 181 ccgccgacgagcgcgtcgagatctgccagctccccgtcggcgacggcgtcaccctctgcc 240
Query: 877 gccgcgtcaagtg 889
|||||||||||||
Sbjct: 241 gccgcgtcaagtg 253
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 306 ccaatcatatcgtagacgacgcgcagcattaa 337
>gb|BG466056.1|BG466056 RHIZ2_48_A08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 512
Score = 373 bits (188), Expect = e-101
Identities = 239/256 (93%)
Strand = Plus / Plus
Query: 634 acgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccg 693
|||||||||||||||||||||||| ||||| ||||||||| || |||||||||| || |
Sbjct: 1 acgccgacaaggacaactacctcaactaccccgagcggctgctcaagctggtgaagctgg 60
Query: 694 gcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacg 753
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacg 120
Query: 754 cgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgc 813
| |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct: 121 cccccatgcgcaagtacatccgcttctaccgcgacttcgtgctcgtcctcaacaaggcgc 180
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 181 tcgcccccgacgagcgcgtcgagatttgccagctccccgtcggcgacggcgtcaccctct 240
Query: 874 gccgccgcgtcaagtg 889
||||||||||||||||
Sbjct: 241 gccgccgcgtcaagtg 256
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 315 ccaatcatatcgtagacgacgcgcagcattaa 346
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1039 tggctctttcttggccctgta 1059
|||||||||||||||||||||
Sbjct: 371 tggctctttcttggccctgta 391
>gb|CD229877.1|CD229877 CCC1_20_D09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_20_D09_A007 5', mRNA sequence
Length = 665
Score = 363 bits (183), Expect = 2e-098
Identities = 195/199 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 467 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 526
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 586
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 587 cgcgagatcaccgccaagcacccatggaacctgatgacgacctccgccgacgaggggcag 646
Query: 354 ttcctcaacatgctcatca 372
|||||||||||||||||||
Sbjct: 647 ttcctcaacatgctcatca 665
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 386 gcactgcccgcaatggccaccacggcgacc 415
>gb|BI099425.1|BI099425 IP1_41_H11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 339 bits (171), Expect = 4e-091
Identities = 216/231 (93%)
Strand = Plus / Plus
Query: 659 ctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacac 718
||||||||| ||||| || |||||||||| || || |||||||||||||||||||||||
Sbjct: 4 ctaccacgaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaacac 63
Query: 719 gctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgctt 778
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 64 gctgtggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccgctt 123
Query: 779 ctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagat 838
||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 124 ctaccgcgacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcgagat 183
Query: 839 ctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 184 ctgccagctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagtg 234
Score = 56.0 bits (28), Expect = 8e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
|||||||||| |||||||||||||||||||||
Sbjct: 287 ccaatcatatggtagacgacgcgcagcattaa 318
>gb|BI351083.1|BI351083 IP1_69_F01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 331 bits (167), Expect = 9e-089
Identities = 212/227 (93%)
Strand = Plus / Plus
Query: 663 cacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctg 722
||||| ||||| || |||||||||| || || |||||||||||||||||||||||||||
Sbjct: 1 cacgaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaacacgctg 60
Query: 723 tggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctac 782
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 tggaacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatccgcttctac 120
Query: 783 cgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgc 842
||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 121 cgcgacttcgtgctcgtcctcaacaaggcgctcgccgccgacgagcgcgtcgagatctgc 180
Query: 843 cagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 181 cagctccccgtcggcgacggcgtcaccctctgccgccgcgtcaagtg 227
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 280 ccaatcatatcgtagacgacgcgcagcattaa 311
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1039 tggctctttcttggccctgta 1059
|||||||||||||||||||||
Sbjct: 334 tggctctttcttggccctgta 354
>gb|BI098677.1|BI098677 IP1_35_E08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 414
Score = 307 bits (155), Expect = 1e-081
Identities = 179/187 (95%)
Strand = Plus / Plus
Query: 703 tcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgc 762
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1 tcggctacgacaacacgctgtggaacggctctgtcgtgctccccgacgacgcccccatgc 60
Query: 763 gcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccg 822
||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct: 61 gcaagtacatccgcttctaccgcgacttcgtgctcgtcctcaacaaggcgctcgccgccg 120
Query: 823 acgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcg 882
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 acgagcgcgtcgagatctgccagctccccgtcggcgacggcgtcaccctctgccgccgcg 180
Query: 883 tcaagtg 889
|||||||
Sbjct: 181 tcaagtg 187
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 989 ccaatcatatcgtagacgacgcgcagcattaa 1020
||||||||||||||||||||||||||||||||
Sbjct: 240 ccaatcatatcgtagacgacgcgcagcattaa 271
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1039 tggctctttcttggccctgta 1059
|||||||||||||||||||||
Sbjct: 294 tggctctttcttggccctgta 314
>gb|BG104126.1|BG104126 RHIZ2_40_H02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 348
Score = 291 bits (147), Expect = 7e-077
Identities = 159/163 (97%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 186 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacaacctc 245
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 305
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacct 336
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 306 cgcgagatcaccgccaagcacccatggaacctgatgacgacct 348
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 76 cactgcacgcaatggccaccacggcgacc 104
|||||| ||||||||||||||||||||||
Sbjct: 118 cactgcccgcaatggccaccacggcgacc 146
>gb|BE360832.1|BE360832 DG1_67_F09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 621
Score = 276 bits (139), Expect = 4e-072
Identities = 145/147 (98%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 171 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 230
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 290
Query: 294 cgcgagatcaccgccaagcacccatgg 320
|||||||||||||||||||||||||||
Sbjct: 291 cgcgagatcaccgccaagcacccatgg 317
Score = 248 bits (125), Expect = 1e-063
Identities = 158/169 (93%)
Strand = Plus / Plus
Query: 606 cacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccac 665
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 453 cacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccac 512
Query: 666 gagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
|| ||||| || |||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 513 gaccggctgctcaagctggtgaagctggggggcctcatcggctacgacaacacgctgtgg 572
Query: 726 aacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatcc 774
|||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 573 aacggctctgtcgtgctccccgacgacgcccccatgcgcaagtacatcc 621
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 90 gcactgcccgcaatggccaccacggcgacc 119
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgag 347
||||||||||||| |||||||||||||||
Sbjct: 418 ggaacctgatgacgacctccgccgacgag 446
>gb|BE363067.1|BE363067 DG1_9_E08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 276 bits (139), Expect = 4e-072
Identities = 145/147 (98%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 171 gagcagaagacgcgccactccgaggtcggacacaagagcctgctcaagagcgacgacctc 230
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctc 290
Query: 294 cgcgagatcaccgccaagcacccatgg 320
|||||||||||||||||||||||||||
Sbjct: 291 cgcgagatcaccgccaagcacccatgg 317
Score = 123 bits (62), Expect = 4e-026
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 606 cacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccac 665
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 453 cacgggtcgttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccac 512
Query: 666 gagcggctcctgaagctggtga 687
|| ||||| || ||||||||||
Sbjct: 513 gaccggctgctcaagctggtga 534
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 gcactgcacgcaatggccaccacggcgacc 104
||||||| ||||||||||||||||||||||
Sbjct: 90 gcactgcccgcaatggccaccacggcgacc 119
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgag 347
||||||||||||| |||||||||||||||
Sbjct: 418 ggaacctgatgacgacctccgccgacgag 446
>gb|CW122781.1|CW122781 104_501_11110857_148_34673_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110857, DNA
sequence
Length = 605
Score = 258 bits (130), Expect = 1e-066
Identities = 142/146 (97%)
Strand = Plus / Minus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 314 ggaacctgatgacgacctccgccgacgaggggcagttcctcaacatgctcatcaagctca 255
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 254 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 195
Query: 439 cgctcgcactcccggaggacggcacg 464
||||||| ||||||||||||||||||
Sbjct: 194 cgctcgctctcccggaggacggcacg 169
Score = 159 bits (80), Expect = 7e-037
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctccgc 439
Query: 297 gagatcaccgccaagcacccatgg 320
||||||||||||||||||||||||
Sbjct: 438 gagatcaccgccaagcacccatgg 415
Score = 105 bits (53), Expect = 9e-021
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||
Sbjct: 70 gatcttggccatggacatcaaccgcgagaactacgagctgggcctgccctgcatcgagaa 11
Query: 524 ggccggcgt 532
|||||||||
Sbjct: 10 ggccggcgt 2
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 381,616
Number of Sequences: 832831
Number of extensions: 381616
Number of successful extensions: 115132
Number of sequences better than 0.5: 193
Number of HSP's better than 0.5 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114616
Number of HSP's gapped (non-prelim): 497
length of query: 1190
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1170
effective length of database: 474,703,049
effective search space: 555402567330
effective search space used: 555402567330
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)