BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF482743.1|CF482743 POL1_8_H02.g1_A002 Pollen Sorghum bi... 696 0.0
gb|CD212492.1|CD212492 HS1_5_C09.g1_A012 Heat-shocked seedl... 654 0.0
gb|BE360539.1|BE360539 DG1_64_E12.b1_A002 Dark Grown 1 (DG1... 591 e-167
gb|CD212992.1|CD212992 HS1_17_D02.g1_A012 Heat-shocked seed... 565 e-159
gb|BE360633.1|BE360633 DG1_64_E12.g1_A002 Dark Grown 1 (DG1... 458 e-127
gb|CD212389.1|CD212389 HS1_5_C09.b1_A012 Heat-shocked seedl... 434 e-119
gb|CD212886.1|CD212886 HS1_17_D02.b1_A012 Heat-shocked seed... 414 e-113
gb|CF482661.1|CF482661 POL1_8_H02.b1_A002 Pollen Sorghum bi... 406 e-111
gb|BG557893.1|BG557893 EM1_55_H09.b1_A002 Embryo 1 (EM1) So... 339 5e-091
gb|CW141260.1|CW141260 104_532_11136222_116_34935_029 Sorgh... 137 3e-030
gb|CW141261.1|CW141261 104_532_11136222_148_34931_029 Sorgh... 137 3e-030
gb|CW090431.1|CW090431 104_436_10949277_116_32610_091 Sorgh... 123 5e-026
gb|CW121135.1|CW121135 104_498_11109727_116_34651_018 Sorgh... 123 5e-026
gb|CW090430.1|CW090430 104_436_10949277_114_32606_091 Sorgh... 107 3e-021
gb|CW121136.1|CW121136 104_498_11109727_148_34655_018 Sorgh... 105 1e-020
gb|CL184403.1|CL184403 104_397_10898831_114_32380_086 Sorgh... 76 1e-011
gb|CW079006.1|CW079006 104_397_10898831_114_32360_086 Sorgh... 76 1e-011
gb|CW168659.1|CW168659 104_578_11154262_116_36602_089 Sorgh... 76 1e-011
gb|CW493721.1|CW493721 fsbb001f284k04k0 Sorghum methylation... 56 1e-005
gb|BE360548.1|BE360548 DG1_64_D12.b1_A002 Dark Grown 1 (DG1... 56 1e-005
gb|CW228418.1|CW228418 104_668_11206354_148_37253_043 Sorgh... 48 0.002
gb|CW101644.1|CW101644 104_469_11004766_116_34407_087 Sorgh... 46 0.010
gb|CW232236.1|CW232236 104_681_11211553_148_37349_001 Sorgh... 46 0.010
gb|CW324474.1|CW324474 104_819_11477182_116_35917_095 Sorgh... 46 0.010
gb|CW324475.1|CW324475 104_819_11477182_148_35913_095 Sorgh... 46 0.010
gb|CW359983.1|CW359983 fsbb001f027n20f0 Sorghum methylation... 46 0.010
gb|CW359984.1|CW359984 fsbb001f027n20k0 Sorghum methylation... 46 0.010
gb|BG158363.1|BG158363 FM1_59_E01.b1_A003 Floral-Induced Me... 46 0.010
gb|BM323828.1|BM323828 PIC1_28_A12.b1_A002 Pathogen-infecte... 46 0.010
gb|CX623070.1|CX623070 GABR1_67_C07.g1_A002 GA- or brassino... 46 0.010
gb|CW033517.1|CW033517 104_263_10502003_114_30359 Sorghum m... 42 0.15
gb|CW041299.1|CW041299 104_274_10506486_114_30470 Sorghum m... 42 0.15
gb|CW041300.1|CW041300 104_274_10506486_116_30434 Sorghum m... 42 0.15
gb|CW125139.1|CW125139 104_505_11112173_148_34711_027 Sorgh... 42 0.15
gb|CW200397.1|CW200397 104_625_11184045_116_36861_081 Sorgh... 42 0.15
gb|CW233723.1|CW233723 104_687_11213598_148_37383_029 Sorgh... 42 0.15
gb|CW305028.1|CW305028 104_790_11466099_148_36061_012 Sorgh... 42 0.15
gb|CW316326.1|CW316326 104_807_11472836_148_35845_068 Sorgh... 42 0.15
gb|CW322422.1|CW322422 104_816_11476088_148_35951_028 Sorgh... 42 0.15
gb|CW323890.1|CW323890 104_818_11476870_148_35907_091 Sorgh... 42 0.15
gb|CW329456.1|CW329456 104_826_11479855_148_35996_032 Sorgh... 42 0.15
gb|CW432449.1|CW432449 fsbb001f147c17k0 Sorghum methylation... 42 0.15
gb|BG412717.1|BG412717 OV2_33_H07.b1_A002 Ovary 2 (OV2) Sor... 42 0.15
gb|BG947876.1|BG947876 IP1_6_D08.b1_A002 Immature pannicle ... 42 0.15
gb|BI074586.1|BI074586 IP1_13_G01.b1_A002 Immature pannicle... 42 0.15
gb|BI141147.1|BI141147 IP1_43_G04.b1_A002 Immature pannicle... 42 0.15
gb|CD227165.1|CD227165 CCC1_4_G02.g1_A007 Callus culture/ce... 42 0.15
gb|CD228911.1|CD228911 CCC1_10_H05.g1_A007 Callus culture/c... 42 0.15
gb|CF483604.1|CF483604 POL1_23_A07.g1_A002 Pollen Sorghum b... 42 0.15
gb|CF486094.1|CF486094 POL1_35_D12.g1_A002 Pollen Sorghum b... 42 0.15
gb|CN146134.1|CN146134 WOUND1_37_H01.g1_A002 Wounded leaves... 42 0.15
gb|CN150672.1|CN150672 WOUND1_70_F03.g1_A002 Wounded leaves... 42 0.15
gb|CX613377.1|CX613377 GABR1_7_G06.g1_A002 GA- or brassinol... 42 0.15
gb|CX613877.1|CX613877 GABR1_10_E07.g1_A002 GA- or brassino... 42 0.15
gb|CX618531.1|CX618531 GABR1_40_E02.b1_A002 GA- or brassino... 42 0.15
gb|CX618619.1|CX618619 GABR1_40_E02.g1_A002 GA- or brassino... 42 0.15
gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region,... 42 0.15
>gb|CF482743.1|CF482743 POL1_8_H02.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_8_H02_A002
5', mRNA sequence
Length = 707
Score = 696 bits (351), Expect = 0.0
Identities = 483/527 (91%)
Strand = Plus / Minus
Query: 820 tttcacatgttacagacgtttggaaggtgaccgttttgctgcaaccttgagctgcttcca 879
|||||||| |||||||||||||| || | | |||||||||||| |||||| |||||||||
Sbjct: 702 tttcacattttacagacgtttggtagtttatcgttttgctgcacccttgaactgcttcca 643
Query: 880 cagatgatagttcgagtgcaaccttaacatctcgtcctccaaagtccctatccccgagaa 939
| |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 642 taaatgatagttcaagtgcaaccttaacatctcgtcctccaaagtccctatccctgaaaa 583
Query: 940 tgttcctaaagaaatcattcattccaccaccgccaccgccaccaccaagaatatcctcaa 999
|||||||||||||||||||||||||||| | |||||||||||||| || |||||||||||
Sbjct: 582 tgttcctaaagaaatcattcattccaccgctgccaccgccaccactaaaaatatcctcaa 523
Query: 1000 atggatttacaaaaccaccctcgaagccagttccgcctccgccagaagcagttttctcat 1059
|||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 522 atggatttccaaaaccaccctcaaagccagttccgcctccaccagaagcagctttctcat 463
Query: 1060 actgatcagggccaacctgatcatataatgatcttttttgttcatcctttagagtctcat 1119
|||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 462 actgatcaggaccaacctgatcatataatgatcttttttgttcatccttcaaagtctcat 403
Query: 1120 aagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgtgtctg 1179
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 402 aagctcgttgaacctcttgaaacttccgttctgcatctgcatcacctttattcgtgtctg 343
Query: 1180 gatggagcttctttgcaagcccataataggcctttttgatctccgcctggctggcgctct 1239
|||| ||||||||||||||||||||||||||||||||||| || | ||||| ||| |||
Sbjct: 342 gatgaagcttctttgcaagcccataataggcctttttgatgtctgattggctagcgttct 283
Query: 1240 tgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtcccgtggaagg 1299
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 282 tactgacgccgagcacatcgtagtagtcccttgccgccaccggcctggttccgtggaaga 223
Query: 1300 acctgcgggcgctgctcggcggatagaagggagagctccgggagggc 1346
||||| ||||||| ||||| | ||||||| || ||||||||||||
Sbjct: 222 acctgtgggcgctactcggtgacgagaagggcgaactccgggagggc 176
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 108 aggaggagagagagcggcgggcgagcaggagc 77
>gb|CD212492.1|CD212492 HS1_5_C09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_5_C09_A012 5', mRNA sequence
Length = 692
Score = 654 bits (330), Expect = 0.0
Identities = 468/514 (91%)
Strand = Plus / Minus
Query: 833 agacgtttggaaggtgaccgttttgctgcaaccttgagctgcttccacagatgatagttc 892
|||||||||| || | | |||||||||||| |||||| ||||||||| | ||||||||||
Sbjct: 692 agacgtttggtagtttatcgttttgctgcacccttgaactgcttccataaatgatagttc 633
Query: 893 gagtgcaaccttaacatctcgtcctccaaagtccctatccccgagaatgttcctaaagaa 952
||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct: 632 aagtgcaaccttaacatctcgtcccccaaagtccctatccctgaaaatgttcctaaagaa 573
Query: 953 atcattcattccaccaccgccaccgccaccaccaagaatatcctcaaatggatttacaaa 1012
||||||||||||||| | |||||||||||||| || ||||||||||||||||||| ||||
Sbjct: 572 atcattcattccaccgctgccaccgccaccactaaaaatatcctcaaatggatttccaaa 513
Query: 1013 accaccctcgaagccagttccgcctccgccagaagcagttttctcatactgatcagggcc 1072
||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||
Sbjct: 512 accaccctcaaagccagttccgcctccaccagaagcagctttctcatattgatcaggacc 453
Query: 1073 aacctgatcatataatgatcttttttgttcatcctttagagtctcataagctcgttgaac 1132
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 452 aacctgatcatataatgatcttttttgttcatccttcaaagtctcataagctcgttgaac 393
Query: 1133 ctcttgaaacttgcgttctgcatccgcatcacctttatttgtgtctggatggagcttctt 1192
|||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 392 ctcttgaaacttccgttctgcatctgcatcacctttattcgtgtctggatgaagcttctt 333
Query: 1193 tgcaagcccataataggcctttttgatctccgcctggctggcgctcttgctgacgccgag 1252
||||||||||||||||||||||||||| || | ||||| ||| |||| |||||||||||
Sbjct: 332 tgcaagcccataataggcctttttgatgtctgattggctagcgttcttactgacgccgag 273
Query: 1253 cacatcgtagtagtcccttgccgccaccggcctggtcccgtggaaggacctgcgggcgct 1312
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 272 cacatcgtagtagtcccttgccgccaccggcctggttccgtggaagaacctgtgggcgct 213
Query: 1313 gctcggcggatagaagggagagctccgggagggc 1346
||||| | ||||| | || ||||||||||||
Sbjct: 212 actcggtgacgagaagcgcgaactccgggagggc 179
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 111 aggaggagagagagcggcgggcgagcaggagc 80
>gb|BE360539.1|BE360539 DG1_64_E12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 601
Score = 591 bits (298), Expect = e-167
Identities = 400/434 (92%)
Strand = Plus / Minus
Query: 913 gtcctccaaagtccctatccccgagaatgttcctaaagaaatcattcattccaccaccgc 972
||||||||||||||||||||| || |||||||||||||||||||||||||||||| | ||
Sbjct: 601 gtcctccaaagtccctatccctgaaaatgttcctaaagaaatcattcattccaccgctgc 542
Query: 973 caccgccaccaccaagaatatcctcaaatggatttacaaaaccaccctcgaagccagttc 1032
|||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 541 caccgccaccactaaaaatatcctcaaatggatttccaaaaccaccctcaaagccagttc 482
Query: 1033 cgcctccgccagaagcagttttctcatactgatcagggccaacctgatcatataatgatc 1092
||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 481 cgcctccaccagaagcagctttctcatactgatcaggaccaacctgatcatataatgatc 422
Query: 1093 ttttttgttcatcctttagagtctcataagctcgttgaacctcttgaaacttgcgttctg 1152
|||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421 ttttttgttcatccttcaaagtctcataagctcgttgaacctcttgaaacttccgttctg 362
Query: 1153 catccgcatcacctttatttgtgtctggatggagcttctttgcaagcccataataggcct 1212
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 catctgcatcacctttattcgtgtctggatgaagcttctttgcaagcccataataggcct 302
Query: 1213 ttttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttg 1272
||||||| || | ||||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct: 301 ttttgatgtctgattggctagcgttcttactgacgccgagcacatcgtagtagtcccttg 242
Query: 1273 ccgccaccggcctggtcccgtggaaggacctgcgggcgctgctcggcggatagaagggag 1332
|||||||||||||||| ||||||||| ||||| ||||||| ||||| | ||||||| |
Sbjct: 241 ccgccaccggcctggttccgtggaagaacctgtgggcgctactcggtgacgagaagggcg 182
Query: 1333 agctccgggagggc 1346
| ||||||||||||
Sbjct: 181 aactccgggagggc 168
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 100 aggaggagagagagcggcgggcgagcaggagc 69
>gb|CD212992.1|CD212992 HS1_17_D02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_17_D02_A012 5', mRNA sequence
Length = 587
Score = 565 bits (285), Expect = e-159
Identities = 393/429 (91%)
Strand = Plus / Minus
Query: 918 ccaaagtccctatccccgagaatgttcctaaagaaatcattcattccaccaccgccaccg 977
|||||||||||||||| || |||||||||||||||||||||||||||||| | |||||||
Sbjct: 583 ccaaagtccctatccctgaaaatgttcctaaagaaatcattcattccaccgctgccaccg 524
Query: 978 ccaccaccaagaatatcctcaaatggatttacaaaaccaccctcgaagccagttccgcct 1037
||||||| || ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 523 ccaccactaaaaatatcctcaaatggatttccaaaaccaccctcaaagccagttccgcct 464
Query: 1038 ccgccagaagcagttttctcatactgatcagggccaacctgatcatataatgatcttttt 1097
|| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 463 ccaccagaagcagctttctcatattgatcaggaccaacctgatcatataatgatcttttt 404
Query: 1098 tgttcatcctttagagtctcataagctcgttgaacctcttgaaacttgcgttctgcatcc 1157
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 403 tgttcatccttcaaagtctcataagctcgttgaacctcttgaaacttccgttctgcatct 344
Query: 1158 gcatcacctttatttgtgtctggatggagcttctttgcaagcccataataggcctttttg 1217
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 343 gcatcacctttattcgtgtctggatgaagcttctttgcaagcccataataggcctttttg 284
Query: 1218 atctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgcc 1277
|| || | ||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 283 atgtctgattggctagcgttcttactgacgccgagcacatcgtagtagtcccttgccgcc 224
Query: 1278 accggcctggtcccgtggaaggacctgcgggcgctgctcggcggatagaagggagagctc 1337
||||||||||| ||||||||| ||||| ||||||| ||||| | ||||| | || |||
Sbjct: 223 accggcctggttccgtggaagaacctgtgggcgctactcggtgacgagaagcgcgaactc 164
Query: 1338 cgggagggc 1346
|||||||||
Sbjct: 163 cgggagggc 155
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 87 aggaggagagagagcggcgggcgagcaggagc 56
>gb|BE360633.1|BE360633 DG1_64_E12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 578
Score = 458 bits (231), Expect = e-127
Identities = 312/339 (92%)
Strand = Plus / Minus
Query: 183 gctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatcagc 242
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 339 gctgccttcgcgtccttctcatcttcgccttgctcttccttcgcgaattcctcaatcagc 280
Query: 243 tcccgctgtctagacgtcaaattttcggggatgttgacattgaaatggacatattgatct 302
|||||||||| | |||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 279 acccgctgtcttggtgtcaaattcatagggatggtgacattgaaatggacatattgatct 220
Query: 303 ccgtggtacggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgacca 362
|| | ||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 219 ccatagtatggtgagtttcttgccttgatcccttttcctctcagaactaccttctgacca 160
Query: 363 ggttgagtaccgggcttgatctttagaacaacgtctccactgagagttgggacttgaact 422
||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 159 ggttgagtaccaggtttgacctttagaacaacgtctccactaagagttgggacttgaact 100
Query: 423 gtccctcccaaaattgcctgagtcacattcaggacagcatcaacatgaatatcacctttc 482
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 99 gtccctcccaaaattgcctgagtcacattcagaacagcatcaacatgaatatcacctttt 40
Query: 483 tctcttcggaaaacaggatcctcacgaacctcgagggtc 521
||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 39 tctctacggaatacaggatcctcacgaaccttgagggtc 1
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 36 ttattccagctacaaaatccgaaacaaagacctat 70
|||||||| ||||||||||| ||||||||| ||||
Sbjct: 527 ttattccatctacaaaatcccaaacaaagatctat 493
>gb|CD212389.1|CD212389 HS1_5_C09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_5_C09_A012 3', mRNA sequence
Length = 657
Score = 434 bits (219), Expect = e-119
Identities = 288/311 (92%)
Strand = Plus / Minus
Query: 183 gctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatcagc 242
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 315 gctgccttcgcgtccttctcatcttcgccttgctcttccttcgcgaattcctcgatcagc 256
Query: 243 tcccgctgtctagacgtcaaattttcggggatgttgacattgaaatggacatattgatct 302
|||||||||| | |||||||| | |||||| |||| |||||||||||||||||||||
Sbjct: 255 acccgctgtcttggtgtcaaattcacagggatggtgacgttgaaatggacatattgatct 196
Query: 303 ccgtggtacggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgacca 362
|| | ||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 195 ccatagtatggtgagtttcttgccttgatcccttttcctctcagaactaccttctgacca 136
Query: 363 ggttgagtaccgggcttgatctttagaacaacgtctccactgagagttgggacttgaact 422
||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 135 ggttgagtaccaggtttgacctttagaacaacgtctccactaagagttgggacttgaact 76
Query: 423 gtccctcccaaaattgcctgagtcacattcaggacagcatcaacatgaatatcacctttc 482
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 75 gtccctcccaaaattgcctgagtcacattcagaacagcatcaacatgaatatcacctttc 16
Query: 483 tctcttcggaa 493
||||| |||||
Sbjct: 15 tctctacggaa 5
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 36 ttattccagctacaaaatccgaaacaaagacctat 70
|||||||||||||||| ||| ||||||||| ||||
Sbjct: 504 ttattccagctacaaactcccaaacaaagatctat 470
>gb|CD212886.1|CD212886 HS1_17_D02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_17_D02_A012 3', mRNA sequence
Length = 646
Score = 414 bits (209), Expect = e-113
Identities = 282/305 (92%), Gaps = 1/305 (0%)
Strand = Plus / Minus
Query: 183 gctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatcagc 242
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 304 gctgccttcgcgtccttctcatcttcgccttgctcttccttcgcgaattcctcgatcagc 245
Query: 243 tcccgctgtctagacgtcaaattttcggggatgttgacattgaaatggacatattgatct 302
|||||||||| | |||||||| | |||||| |||| |||||||||||||||||||||
Sbjct: 244 acccgctgtcttggtgtcaaattcacagggatggtgacgttgaaatggacatattgatct 185
Query: 303 ccgtggtacggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgacca 362
|| | ||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 184 ccatagtatggtgagtttcttgccttgatcccttttcctctcagaactaccttctgacca 125
Query: 363 ggttgagtaccgggcttgatctttagaacaacgtctccactgagagttgggacttgaact 422
||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 124 ggttgagtaccaggtttgacctttagaacaacgtctccactaagagttgggacttgaact 65
Query: 423 gtccctcccaaaattgcctgagtcacattcaggacagcatcaacatgaatatcacctttc 482
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 64 gtccctccc-aaattgcctgagtcacattcagaacagcatcaacatgaatatcacctttc 6
Query: 483 tctct 487
|||||
Sbjct: 5 tctct 1
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 36 ttattccagctacaaaatccgaaacaaagacctat 70
|||||||||||||||| ||| ||||||||| ||||
Sbjct: 493 ttattccagctacaaactcccaaacaaagatctat 459
>gb|CF482661.1|CF482661 POL1_8_H02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_H02_A002 3', mRNA sequence
Length = 648
Score = 406 bits (205), Expect = e-111
Identities = 280/305 (91%)
Strand = Plus / Minus
Query: 183 gctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatcagc 242
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 306 gctgccttcgcgtccttctcatcttcgccttgctcttccttcgcgaattcctcaatcagc 247
Query: 243 tcccgctgtctagacgtcaaattttcggggatgttgacattgaaatggacatattgatct 302
|||||||||| | |||||||| |||| | ||||||||||||||||||||||||||
Sbjct: 246 acccgctgtcttggtgtcaaattcatagggacggtgacattgaaatggacatattgatct 187
Query: 303 ccgtggtacggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgacca 362
|| | ||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 186 ccatagtatggtgagtttcttgccttgatcccttttcctctcagaactaccttctgacca 127
Query: 363 ggttgagtaccgggcttgatctttagaacaacgtctccactgagagttgggacttgaact 422
||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 126 ggttgagtaccaggtttgacctttagaacaacgtctccactaagagttgggacttgaact 67
Query: 423 gtccctcccaaaattgcctgagtcacattcaggacagcatcaacatgaatatcacctttc 482
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 66 gtccctcccaaaattgcctgagtcacattcagaacagcatcaacatgaatatcacctttt 7
Query: 483 tctct 487
|||||
Sbjct: 6 tctct 2
Score = 54.0 bits (27), Expect = 4e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 36 ttattccagctacaaaatccgaaacaaagacctat 70
|||||||||||||||||||| ||||||||| ||||
Sbjct: 494 ttattccagctacaaaatcccaaacaaagatctat 460
>gb|BG557893.1|BG557893 EM1_55_H09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 453
Score = 339 bits (171), Expect = 5e-091
Identities = 240/263 (91%)
Strand = Plus / Minus
Query: 1084 ataatgatcttttttgttcatcctttagagtctcataagctcgttgaacctcttgaaact 1143
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 453 ataatgatcttttttgttcatccttcaaagtctcataagctcgttgaacctcttgaaact 394
Query: 1144 tgcgttctgcatccgcatcacctttatttgtgtctggatggagcttctttgcaagcccat 1203
| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 393 tccgttctgcatctgcatcacctttattcgtgtctggatgaagcttctttgcaagcccat 334
Query: 1204 aataggcctttttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagt 1263
|||||||||||||||| || | ||||| ||| |||| ||||||||||||||||||||||
Sbjct: 333 aataggcctttttgatgtctgattggctagcgttcttactgacgccgagcacatcgtagt 274
Query: 1264 agtcccttgccgccaccggcctggtcccgtggaaggacctgcgggcgctgctcggcggat 1323
||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||| |
Sbjct: 273 agtcccttgccgccaccggcctggttccgtggaagaacctgtgggcgctactcggtgacg 214
Query: 1324 agaagggagagctccgggagggc 1346
||||||| || ||||||||||||
Sbjct: 213 agaagggcgaactccgggagggc 191
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 123 aggaggagagagagcggcgggcgagcaggagc 92
>gb|CW141260.1|CW141260 104_532_11136222_116_34935_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11136222, DNA
sequence
Length = 739
Score = 137 bits (69), Expect = 3e-030
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 413 ctcataagctcgttgaacctcttgaaacttccgttctgcatctgcatcacctttattcgt 472
Query: 1175 gtctggatggagcttctttgcaagc 1199
||||||||| |||||||||||||||
Sbjct: 473 gtctggatgaagcttctttgcaagc 497
Score = 87.7 bits (44), Expect = 3e-015
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 1023 aagccagttccgcctccgccagaagcagttttctcatactgatcagggccaacctg 1078
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct: 5 aagccagttccgcctccaccagaagcagctttctcatactgatcaggaccaacctg 60
Score = 69.9 bits (35), Expect = 7e-010
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||||||||||||||||||
Sbjct: 277 acctgatcatataatgatcttttttgttcatcctt 311
>gb|CW141261.1|CW141261 104_532_11136222_148_34931_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11136222, DNA
sequence
Length = 682
Score = 137 bits (69), Expect = 3e-030
Identities = 81/85 (95%)
Strand = Plus / Minus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 460 ctcataagctcgttgaacctcttgaaacttccgttctgcatctgcatcacctttattcgt 401
Query: 1175 gtctggatggagcttctttgcaagc 1199
||||||||| |||||||||||||||
Sbjct: 400 gtctggatgaagcttctttgcaagc 376
Score = 69.9 bits (35), Expect = 7e-010
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||||||||||||||||||
Sbjct: 596 acctgatcatataatgatcttttttgttcatcctt 562
>gb|CW090431.1|CW090431 104_436_10949277_116_32610_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949277, DNA
sequence
Length = 658
Score = 123 bits (62), Expect = 5e-026
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1199 cccataataggcctttttgatctccgcctggctggcgctcttgctgacgccgagcacatc 1258
||||||||||||||||||||| || | ||||| ||| |||| |||||||||||||||||
Sbjct: 235 cccataataggcctttttgatgtctgattggctagcgttcttactgacgccgagcacatc 294
Query: 1259 gtagtagtcccttgccgccaccggcctggt 1288
||||||||||||||||||||||||||||||
Sbjct: 295 gtagtagtcccttgccgccaccggcctggt 324
Score = 42.1 bits (21), Expect = 0.15
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 1290 ccgtggaaggacctgcgggcgctgctcggcggatagaagggagagctccgggagggc 1346
||||||||| ||||| ||||||| ||||| | ||||||| || ||||||||||||
Sbjct: 431 ccgtggaagaacctgtgggcgctactcggtgacgagaagggcgaactccgggagggc 487
>gb|CW121135.1|CW121135 104_498_11109727_116_34651_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109727, DNA
sequence
Length = 622
Score = 123 bits (62), Expect = 5e-026
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1199 cccataataggcctttttgatctccgcctggctggcgctcttgctgacgccgagcacatc 1258
||||||||||||||||||||| || | ||||| ||| |||| |||||||||||||||||
Sbjct: 6 cccataataggcctttttgatgtctgattggctagcgttcttactgacgccgagcacatc 65
Query: 1259 gtagtagtcccttgccgccaccggcctggt 1288
||||||||||||||||||||||||||||||
Sbjct: 66 gtagtagtcccttgccgccaccggcctggt 95
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 442 aggaggagagagagcggcgggcgagcaggagc 473
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1498 cgccgaacgttctggaatgccctgcgc 1524
||||||||||||||||||| |||||||
Sbjct: 583 cgccgaacgttctggaatggcctgcgc 609
Score = 42.1 bits (21), Expect = 0.15
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 1290 ccgtggaaggacctgcgggcgctgctcggcggatagaagggagagctccgggagggc 1346
||||||||| ||||| ||||||| ||||| | ||||||| || ||||||||||||
Sbjct: 202 ccgtggaagaacctgtgggcgctactcggtgacgagaagggcgaactccgggagggc 258
>gb|CW090430.1|CW090430 104_436_10949277_114_32606_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949277, DNA
sequence
Length = 734
Score = 107 bits (54), Expect = 3e-021
Identities = 82/90 (91%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 1199 cccataataggcctttttgatctccgcctggctggcgctcttgctgacgccgagcacatc 1258
||||||||||||||||| ||| || | ||||| ||| |||| |||||||||||||||||
Sbjct: 707 cccataataggcctttt-gatgtctgattggctagcgttcttactgacgccgagcacatc 649
Query: 1259 gtagtagtcccttgccgccaccggcctggt 1288
||||||||||||||||||||||||||||||
Sbjct: 648 gtagtagtcccttgccgccaccggcctggt 619
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 272 aggaggagagagagcggcgggcgagcaggagc 241
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1498 cgccgaacgttctggaatgccctgcgc 1524
||||||||||||||||||| |||||||
Sbjct: 131 cgccgaacgttctggaatggcctgcgc 105
Score = 42.1 bits (21), Expect = 0.15
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 1290 ccgtggaaggacctgcgggcgctgctcggcggatagaagggagagctccgggagggc 1346
||||||||| ||||| ||||||| ||||| | ||||||| || ||||||||||||
Sbjct: 512 ccgtggaagaacctgtgggcgctactcggtgacgagaagggcgaactccgggagggc 456
>gb|CW121136.1|CW121136 104_498_11109727_148_34655_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109727, DNA
sequence
Length = 606
Score = 105 bits (53), Expect = 1e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 1208 ggcctttttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtc 1267
|||||||||||| || | ||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 606 ggcctttttgatgtctgattggctagcgttcttactgacgccgagcacatcgtagtagtc 547
Query: 1268 ccttgccgccaccggcctggt 1288
|||||||||||||||||||||
Sbjct: 546 ccttgccgccaccggcctggt 526
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 179 aggaggagagagagcggcgggcgagcaggagc 148
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1498 cgccgaacgttctggaatgccctgcgc 1524
||||||||||||||||||| |||||||
Sbjct: 38 cgccgaacgttctggaatggcctgcgc 12
Score = 42.1 bits (21), Expect = 0.15
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 1290 ccgtggaaggacctgcgggcgctgctcggcggatagaagggagagctccgggagggc 1346
||||||||| ||||| ||||||| ||||| | ||||||| || ||||||||||||
Sbjct: 419 ccgtggaagaacctgtgggcgctactcggtgacgagaagggcgaactccgggagggc 363
>gb|CL184403.1|CL184403 104_397_10898831_114_32380_086 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898831, DNA
sequence
Length = 604
Score = 75.8 bits (38), Expect = 1e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatc 722
|||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 507 ccttcacagtctttccagaaccaccacattttgtgcaagttgattgcatc 458
Score = 67.9 bits (34), Expect = 3e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 750 aatcctgaacccctgcaagatagacatgtttcaggtgtggtt 791
||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 348 aatcctgaaaccctgcaagatagacatgtttcaggtttggtt 307
>gb|CW079006.1|CW079006 104_397_10898831_114_32360_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898831, DNA
sequence
Length = 511
Score = 75.8 bits (38), Expect = 1e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatc 722
|||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 474 ccttcacagtctttccagaaccaccacattttgtgcaagttgattgcatc 425
Score = 67.9 bits (34), Expect = 3e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 750 aatcctgaacccctgcaagatagacatgtttcaggtgtggtt 791
||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 315 aatcctgaaaccctgcaagatagacatgtttcaggtttggtt 274
>gb|CW168659.1|CW168659 104_578_11154262_116_36602_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154262, DNA
sequence
Length = 725
Score = 75.8 bits (38), Expect = 1e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatc 722
|||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 469 ccttcacagtctttccagaaccaccacattttgtgcaagttgattgcatc 420
Score = 67.9 bits (34), Expect = 3e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 750 aatcctgaacccctgcaagatagacatgtttcaggtgtggtt 791
||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 310 aatcctgaaaccctgcaagatagacatgtttcaggtttggtt 269
>gb|CW493721.1|CW493721 fsbb001f284k04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284k04, DNA
sequence
Length = 433
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 165 aggaggagagagagcggcgggcgagcaggagc 196
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1498 cgccgaacgttctggaatgccctgcgc 1524
||||||||||||||||||| |||||||
Sbjct: 306 cgccgaacgttctggaatggcctgcgc 332
>gb|BE360548.1|BE360548 DG1_64_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 194
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| |||||||||||||||||||||
Sbjct: 100 aggaggagagagagcggcgggcgagcaggagc 69
>gb|CW228418.1|CW228418 104_668_11206354_148_37253_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206354, DNA
sequence
Length = 496
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 168 ccaccaccgccaccgccaccacca 191
>gb|CW101644.1|CW101644 104_469_11004766_116_34407_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004766, DNA
sequence
Length = 461
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 109 caccaccgccaccgccaccacca 131
>gb|CW232236.1|CW232236 104_681_11211553_148_37349_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211553, DNA
sequence
Length = 686
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 159 ccaccaccgccaccgccaccacc 181
>gb|CW324474.1|CW324474 104_819_11477182_116_35917_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477182, DNA
sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 532 ccaccaccgccaccgccaccacc 554
>gb|CW324475.1|CW324475 104_819_11477182_148_35913_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477182, DNA
sequence
Length = 675
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 529 ccaccaccgccaccgccaccacc 507
>gb|CW359983.1|CW359983 fsbb001f027n20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027n20, DNA
sequence
Length = 661
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 562 ccaccaccgccaccgccaccacc 540
>gb|CW359984.1|CW359984 fsbb001f027n20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027n20, DNA
sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 498 ccaccaccgccaccgccaccacc 520
>gb|BG158363.1|BG158363 FM1_59_E01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 259
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 202 caccaccgccaccgccaccacca 180
>gb|BM323828.1|BM323828 PIC1_28_A12.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 473
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 63 ccaccaccgccaccgccaccacc 41
>gb|CX623070.1|CX623070 GABR1_67_C07.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_67_C07_A002 5', mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 64 ccaccaccgccaccgccaccacc 42
>gb|CW033517.1|CW033517 104_263_10502003_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502003, DNA
sequence
Length = 812
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 311 ccgccaccgccaccaccaaga 331
>gb|CW041299.1|CW041299 104_274_10506486_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506486, DNA
sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 399 ccaccgccaccgccaccacca 419
>gb|CW041300.1|CW041300 104_274_10506486_116_30434 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506486, DNA
sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 649 ccaccgccaccgccaccacca 629
>gb|CW125139.1|CW125139 104_505_11112173_148_34711_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112173, DNA
sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 292 ccaccgccaccgccaccacca 312
>gb|CW200397.1|CW200397 104_625_11184045_116_36861_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184045, DNA
sequence
Length = 711
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 169 ccaccgccaccgccaccacca 189
>gb|CW233723.1|CW233723 104_687_11213598_148_37383_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213598, DNA
sequence
Length = 605
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacca 983
|||||||||||||||||||||
Sbjct: 488 ccaccaccgccaccgccacca 508
>gb|CW305028.1|CW305028 104_790_11466099_148_36061_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466099, DNA
sequence
Length = 397
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 364 ccaccgccaccgccaccacca 384
>gb|CW316326.1|CW316326 104_807_11472836_148_35845_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472836, DNA
sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 423 ccaccgccaccgccaccacca 443
>gb|CW322422.1|CW322422 104_816_11476088_148_35951_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476088, DNA
sequence
Length = 715
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 307 ccaccgccaccgccaccacca 327
>gb|CW323890.1|CW323890 104_818_11476870_148_35907_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476870, DNA
sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 199 ccaccgccaccgccaccacca 179
>gb|CW329456.1|CW329456 104_826_11479855_148_35996_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479855, DNA
sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 186 ccaccgccaccgccaccacca 206
>gb|CW432449.1|CW432449 fsbb001f147c17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147c17, DNA
sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 256 ccaccgccaccgccaccacca 236
>gb|BG412717.1|BG412717 OV2_33_H07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 139 ccgccaccgccaccaccaaga 159
>gb|BG947876.1|BG947876 IP1_6_D08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 545
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 149 ccgccaccgccaccaccaaga 169
>gb|BI074586.1|BI074586 IP1_13_G01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 547
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 139 ccgccaccgccaccaccaaga 159
>gb|BI141147.1|BI141147 IP1_43_G04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 139 ccgccaccgccaccaccaaga 159
>gb|CD227165.1|CD227165 CCC1_4_G02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_G02_A007 5', mRNA sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 156 ccgccaccgccaccaccaaga 176
>gb|CD228911.1|CD228911 CCC1_10_H05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_H05_A007 5', mRNA sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 151 ccgccaccgccaccaccaaga 171
>gb|CF483604.1|CF483604 POL1_23_A07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_23_A07_A002 5', mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 154 ccgccaccgccaccaccaaga 174
>gb|CF486094.1|CF486094 POL1_35_D12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D12_A002 5', mRNA sequence
Length = 563
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 969 ccgccaccgccaccaccaaga 989
|||||||||||||||||||||
Sbjct: 164 ccgccaccgccaccaccaaga 184
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 519,654
Number of Sequences: 832831
Number of extensions: 519654
Number of successful extensions: 147718
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147475
Number of HSP's gapped (non-prelim): 238
length of query: 1565
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1545
effective length of database: 474,703,049
effective search space: 733416210705
effective search space used: 733416210705
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)