BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448720.2.1
(510 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ422000.1|BZ422000 id48d07.b1 WGS-SbicolorF (DH5a methy... 222 2e-056
gb|BZ423358.1|BZ423358 id48d07.g1 WGS-SbicolorF (DH5a methy... 96 4e-018
gb|CL162363.1|CL162363 104_354_10806355_114_31830_259 Sorgh... 72 5e-011
>gb|BZ422000.1|BZ422000 id48d07.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id48d07 5', DNA sequence
Length = 706
Score = 222 bits (112), Expect = 2e-056
Identities = 145/156 (92%)
Strand = Plus / Plus
Query: 24 gttggtgtctggaatctgcgcgccgaaaggctggatgactggtacagagggcaggaggtc 83
|||||| ||||||||||||| || |||| ||||||| |||||||||||||||||||||||
Sbjct: 3 gttggtatctggaatctgcgtgctgaaaagctggataactggtacagagggcaggaggtc 62
Query: 84 tatgtgaaggttgccgatccactgggctacaacatcaccgagatggtcgtcccggacaat 143
|||||||||||||| ||||||||||||||||||||||| || |||||| ||||||| |||
Sbjct: 63 tatgtgaaggttgctgatccactgggctacaacatcactgaaatggtcatcccggataat 122
Query: 144 gccctctactgtggtctactgaaggagaggcaaaag 179
||||| ||||||||||||||||||||||||||||||
Sbjct: 123 gccctgtactgtggtctactgaaggagaggcaaaag 158
Score = 176 bits (89), Expect = 1e-042
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 179 gccacaggttcatgagtcgaacagcaagtcgtcggcgcaaggcgatgctggatggagcaa 238
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 250 gccacaggttcatgagtcaaacagcaagtcgtcggcgcaaggagatgctggatggagcta 309
Query: 239 ccgactcctcgcaaccatgatcctggtcgtcgcagctgtgatcttcagttgat 291
| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 310 caaactcctcgcaaccatgatgctggtcgtcgcagctgtgatcttcagttgat 362
Score = 129 bits (65), Expect = 3e-028
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 312 caaagttttttggtagatttttgcctagaggaaatagaacattgaaacgtctagcctaca 371
|||||||||||| ||||||||||| |||| |||||||||||||||||| |||| | ||||
Sbjct: 368 caaagttttttgctagatttttgcgtagaagaaatagaacattgaaacatctaccttaca 427
Query: 372 agttcagcatagggtagttcgtggagataggatctgg 408
|||||||||||||||| || |||||||||||||||||
Sbjct: 428 agttcagcatagggtaatttgtggagataggatctgg 464
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 412 agctgtttgatagtgtagggcagcttggaatgatgtctgtggagaaggcaagaaacgtga 471
||||| ||||||||||||| || |||| |||||||| |||||| |||||||||| | |||
Sbjct: 477 agctggttgatagtgtaggacaacttgaaatgatgtttgtggaaaaggcaagaagcatga 536
Query: 472 tact 475
||||
Sbjct: 537 tact 540
>gb|BZ423358.1|BZ423358 id48d07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id48d07 5', DNA sequence
Length = 714
Score = 95.6 bits (48), Expect = 4e-018
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 337 tagaggaaatagaacattgaaacgtctagcctacaagttcagcatagggtagttcgtgga 396
|||| |||||||||||||||||| |||| | |||||||||||||||||||| || |||||
Sbjct: 713 tagaagaaatagaacattgaaacatctaccttacaagttcagcatagggtaatttgtgga 654
Query: 397 gataggatctgg 408
||||||||||||
Sbjct: 653 gataggatctgg 642
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 412 agctgtttgatagtgtagggcagcttggaatgatgtctgtggagaaggcaagaaacgtga 471
||||| ||||||||||||| || |||| |||||||| |||||| |||||||||| | |||
Sbjct: 629 agctggttgatagtgtaggacaacttgaaatgatgtttgtggaaaaggcaagaagcatga 570
Query: 472 tact 475
||||
Sbjct: 569 tact 566
>gb|CL162363.1|CL162363 104_354_10806355_114_31830_259 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10806355, DNA sequence
Length = 746
Score = 71.9 bits (36), Expect = 5e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
||||||||||||| || ||||| |||||| ||||||||||||| || |||| |||||||
Sbjct: 72 cggtcctagtctcacttgacaatgttggtatctggaatctgcgtgctgaaaagctggata 13
Query: 61 actggtacagag 72
| ||||||||||
Sbjct: 12 aatggtacagag 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,963
Number of Sequences: 832831
Number of extensions: 102963
Number of successful extensions: 25682
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25675
Number of HSP's gapped (non-prelim): 7
length of query: 510
length of database: 491,359,669
effective HSP length: 19
effective length of query: 491
effective length of database: 475,535,880
effective search space: 233488117080
effective search space used: 233488117080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)