BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448637.2.1
(1190 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedl... 692 0.0
gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stresse... 529 e-148
gb|CW202998.1|CW202998 104_629_11185396_148_37061_008 Sorgh... 517 e-145
gb|CD204731.1|CD204731 HS1_9_B12.g1_A012 Heat-shocked seedl... 274 2e-071
gb|CL152854.1|CL152854 104_336_10780290_114_31365_306 Sorgh... 218 9e-055
gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Me... 96 9e-018
gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle... 96 9e-018
gb|CF756889.1|CF756889 DSAF1_10_H02.g1_A011 Drought-stresse... 56 8e-006
gb|CL197060.1|CL197060 104_423_10943485_114_32325_051 Sorgh... 48 0.002
gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorgh... 40 0.46
gb|CW029590.1|CW029590 104_257_10499761_116_30402 Sorghum m... 40 0.46
gb|CW123173.1|CW123173 104_502_11111070_148_34686_025 Sorgh... 40 0.46
gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Me... 40 0.46
gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Me... 40 0.46
gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2... 40 0.46
>gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 3', mRNA sequence
Length = 654
Score = 692 bits (349), Expect = 0.0
Identities = 421/445 (94%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||| |
Sbjct: 445 gtcacacgaaggaccagttgacgaagcagaatgccaggcagtgcacgttgctgtcctcac 386
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 cgagcaccttccacgccacagcttggtcgaaagaaacatggcgacccattcctgacatgc 326
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccattagtttcgagatgtctgagaata 563
|||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 325 acacacctgatggcaggtatgcgtagccctgttccattagttttgagatatctgagaata 266
Query: 564 gtgctttccttcctgactcgtcgaagatcttgtctagcgtcaggtcttgcagcgcaacaa 623
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct: 265 ttgctttccttcctgactcgtcgaaaatcttgtctagtgtcaggtcttgcagcgcaataa 206
Query: 624 gagatgtttctaacatgtccagccctgccttgtttgcaaacgtaaacataggtttctcct 683
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gagatgtttctaacatgtcaagccctgccttgtttgcaaatgtaaacataggtttctcct 146
Query: 684 taaaggagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcac 743
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 145 taaaagagcagcacagaacagcgtctggatgatgccagagcattttcaacaatgcttcgc 86
Query: 744 cagctccatctgattgattaagtaattccatacctagatggtagtgataactctggcaaa 803
||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 85 cagcttcatctgattgattaagtaattccaaacctagatggtaatgataactctggcaaa 26
Query: 804 cccatctagcaagtgtggcagcttc 828
|||||||||||||||||||||||||
Sbjct: 25 cccatctagcaagtgtggcagcttc 1
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 283 caactagtgcatgcaacatatgccttttgtcacagctgatgattttcc 330
||||||||| ||||||||| || ||||| ||||||||||||||||||
Sbjct: 574 caactagtgattgcaacataagcattttgccacagctgatgattttcc 527
>gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_77_A06_A011 5', mRNA sequence
Length = 503
Score = 529 bits (267), Expect = e-148
Identities = 327/347 (94%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||| |
Sbjct: 347 gtcacacgaaggaccagttgacgaagcagaatgccaggcagtgcacgttgctgtcctcac 288
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 287 cgagcaccttccacgccacagcttggtcgaaagaaacatggcgacccattcctgacatgc 228
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccattagtttcgagatgtctgagaata 563
|||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 227 acacacctgatggcaggtatgcgtagccctgttccattagttttgagatatctgagaata 168
Query: 564 gtgctttccttcctgactcgtcgaagatcttgtctagcgtcaggtcttgcagcgcaacaa 623
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct: 167 ttgctttccttcctgactcgtcgaaaatcttgtctagtgtcaggtcttgcagcgcaataa 108
Query: 624 gagatgtttctaacatgtccagccctgccttgtttgcaaacgtaaacataggtttctcct 683
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 107 gagatgtttctaacatgtcaagccctgccttgtttgcaaatgtaaacataggtttctcct 48
Query: 684 taaaggagcagcacagaacagcatctggatgatgccagagcattttc 730
|||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 47 taaaagagcagcacagaacagcgtctggatgatgccagagcattttc 1
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 283 caactagtgcatgcaacatatgccttttgtcacagctgatgattttcc 330
||||||||| ||||||||| || ||||| ||||||||||||||||||
Sbjct: 476 caactagtgattgcaacataagcattttgccacagctgatgattttcc 429
>gb|CW202998.1|CW202998 104_629_11185396_148_37061_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185396, DNA
sequence
Length = 692
Score = 517 bits (261), Expect = e-145
Identities = 294/305 (96%)
Strand = Plus / Plus
Query: 788 tgataactctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatc 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgataactctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatc 421
Query: 848 ctatgcccagcatttagaccagattgggagggagatatagccatcgacactctttgcaca 907
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctctgcccagcatttagaccagattgggagggagatatagccatcgacactctttgcaca 481
Query: 908 gcagaaatgacactacgaacatattgacgggccattgctgcaacgctgtcctgaaggtgc 967
||||||| |||| ||||||||||||||||||||| | |||||| ||||| |||||||||
Sbjct: 482 gcagaaacaacaccacgaacatattgacgggccatagttgcaacactgtcttgaaggtgc 541
Query: 968 atctcatacgggaattgaaaggcgattgtcagcacagatctcaaattgcagtcatctgga 1027
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 542 atctcataagggaattgaaaggcgattgtcagcacagatctcaaattacagtcatctgga 601
Query: 1028 gatgcatcccctgaggcttggggtgcagcagagcccacatcaagactagatgccaaatct 1087
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 602 gatgcatcccctgaggcttggggtgcagcagaacccacatcaagactagatgccaaatct 661
Query: 1088 agcgt 1092
|||||
Sbjct: 662 agcgt 666
Score = 178 bits (90), Expect = 8e-043
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 681 ccttaaaggagcagcacagaacagcatctggatgatgccagagcattttcaacaatgctt 740
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 144 ccttaaaagagcagcacagaacagcgtctggatgatgccagagcattttcaacaatgctt 203
Query: 741 caccagctccatctgattgattaagtaattccatacctagatggta 786
|||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 204 caccagcttcatctgattgattaagtaattccaaacctagatggta 249
>gb|CD204731.1|CD204731 HS1_9_B12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 5', mRNA sequence
Length = 686
Score = 274 bits (138), Expect = 2e-071
Identities = 200/227 (88%)
Strand = Plus / Minus
Query: 946 tgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcacaga 1005
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 tgcaacactgtcttgaaggtgcatctcataagggaattgaaaggcgattgtcagcacaga 622
Query: 1006 tctcaaattgcagtcatctggagatgcatcccctgaggcttggggtgcagcagagcccac 1065
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tctcaaattacagtcatctggagatgcatcccctgaggcttggggtgcagcagaacccac 562
Query: 1066 atcaagactagatgccaaatctagcgtnnnaccnnnnnatacaccatctgnnttcacatc 1125
||||||||||||||||||||||||||| || ||||||||||| |||| |||
Sbjct: 561 atcaagactagatgccaaatctagcgtcctgccagaggctacaccatctgttttcatatc 502
Query: 1126 aagtngtatgacacganagnnnnnngnaatcaatggagcatcatctg 1172
|||| ||||||||||| || | ||||||||||||||||||||
Sbjct: 501 aagtggtatgacacgaaagccagaagaaatcaatggagcatcatctg 455
>gb|CL152854.1|CL152854 104_336_10780290_114_31365_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780290, DNA
sequence
Length = 772
Score = 218 bits (110), Expect = 9e-055
Identities = 140/150 (93%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||| |
Sbjct: 248 gtcacacgaaggaccagttgacgaagcagaatgccaggcagtgcacgttgctgtcctcac 189
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 188 cgagcaccttccacgccacagcttggtcgaaagaaacatggcgacccattcctgacatgc 129
Query: 504 acacgcctgacggcaggtacgcgtagccct 533
|||| ||||| |||||||| ||||||||||
Sbjct: 128 acacacctgatggcaggtatgcgtagccct 99
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 283 caactagtgcatgcaacatatgccttttgtcacagctgatgattttcc 330
||||||||| ||||||||| || ||||| ||||||||||||||||||
Sbjct: 377 caactagtgattgcaacataagcattttgccacagctgatgattttcc 330
>gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 513
Score = 95.6 bits (48), Expect = 9e-018
Identities = 126/152 (82%)
Strand = Plus / Minus
Query: 389 acgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgccgagc 448
|||||||||||||||||||| ||||| || |||||||| | ||||| ||| || |||||
Sbjct: 246 acgaaggaccagttgacgaaacagaaggcgaggcagtgtacgttgccatcttcaccgaga 187
Query: 449 accttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgcacacg 508
|| |||||||| ||||||| || | || |||||||||||||| || |||| ||| ||
Sbjct: 186 actttccacgcaacagcttcctcataggagacatggcggcccatcccagacaagcatacc 127
Query: 509 cctgacggcaggtacgcgtagccctgttccat 540
|| | ||||| |||||| ||||||||||||||
Sbjct: 126 ccagccggcaagtacgcatagccctgttccat 95
>gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 95.6 bits (48), Expect = 9e-018
Identities = 132/160 (82%)
Strand = Plus / Minus
Query: 389 acgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgccgagc 448
|||||||||||||||||||| ||||| || |||||||| | ||||| ||| || |||||
Sbjct: 329 acgaaggaccagttgacgaaacagaaggcgaggcagtgtacgttgccatcttcaccgaga 270
Query: 449 accttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgcacacg 508
|| |||||||| ||||||| || | || |||||||||||||| || |||| ||| ||
Sbjct: 269 actttccacgcaacagcttcctcataggagacatggcggcccatcccagacaagcatacc 210
Query: 509 cctgacggcaggtacgcgtagccctgttccattagtttcg 548
|| | ||||| |||||| || ||||||||||| |||||||
Sbjct: 209 ccagccggcaagtacgcatatccctgttccatcagtttcg 170
>gb|CF756889.1|CF756889 DSAF1_10_H02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_10_H02_A011 3', mRNA sequence
Length = 390
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 283 caactagtgcatgcaacatatgccttttgtcacagctgatgattttcc 330
||||||||| ||||||||| || ||||| ||||||||||||||||||
Sbjct: 99 caactagtgattgcaacataagcattttgccacagctgatgattttcc 52
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 234 aacatctgaatggaatgacagaccaaaa 261
||||||||||||||||||| |||||||
Sbjct: 267 aacatctgaatggaatgacgaaccaaaa 240
>gb|CL197060.1|CL197060 104_423_10943485_114_32325_051 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943485, DNA
sequence
Length = 709
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/55 (81%)
Strand = Plus / Plus
Query: 1118 ttcacatcaagtngtatgacacganagnnnnnngnaatcaatggagcatcatctg 1172
|||| ||||||| ||||||||||| || | ||||||||||||||||||||
Sbjct: 236 ttcatatcaagtggtatgacacgaaagccagaagaaatcaatggagcatcatctg 290
>gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899358, DNA
sequence
Length = 355
Score = 40.1 bits (20), Expect = 0.46
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 385 tcacacgaaggaccagttgacgaa 408
|||||||||||||||||| |||||
Sbjct: 217 tcacacgaaggaccagttcacgaa 194
>gb|CW029590.1|CW029590 104_257_10499761_116_30402 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499761, DNA
sequence
Length = 781
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 896 actctttgcacagcagaaat 915
||||||||||||||||||||
Sbjct: 217 actctttgcacagcagaaat 198
>gb|CW123173.1|CW123173 104_502_11111070_148_34686_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111070, DNA
sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 896 actctttgcacagcagaaat 915
||||||||||||||||||||
Sbjct: 142 actctttgcacagcagaaat 123
>gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.46
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 385 tcacacgaaggaccagttgacgaa 408
|||||||||||||||||| |||||
Sbjct: 325 tcacacgaaggaccagttcacgaa 302
>gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.46
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 385 tcacacgaaggaccagttgacgaa 408
|||||||||||||||||| |||||
Sbjct: 438 tcacacgaaggaccagttcacgaa 415
>gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 369
Score = 40.1 bits (20), Expect = 0.46
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 385 tcacacgaaggaccagttgacgaa 408
|||||||||||||||||| |||||
Sbjct: 283 tcacacgaaggaccagttcacgaa 260
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 252,972
Number of Sequences: 832831
Number of extensions: 252972
Number of successful extensions: 66646
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66615
Number of HSP's gapped (non-prelim): 27
length of query: 1190
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1170
effective length of database: 474,703,049
effective search space: 555402567330
effective search space used: 555402567330
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)