BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448569.2.1
(758 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ779779.1|BZ779779 ii34e07.g1 WGS-SbicolorF (DH5a methy... 529 e-148
gb|CW301137.1|CW301137 104_784_11464043_116_36253_034 Sorgh... 529 e-148
gb|CW063398.1|CW063398 104_309_10521981_114_30134 Sorghum m... 521 e-146
gb|CW451375.1|CW451375 fsbb001f191g19f0 Sorghum methylation... 515 e-144
gb|BZ779778.1|BZ779778 ii34e07.b1 WGS-SbicolorF (DH5a methy... 502 e-140
gb|CN139961.1|CN139961 OX1_33_E06.b1_A002 Oxidatively-stres... 494 e-138
gb|CX616461.1|CX616461 GABR1_28_C04.b1_A002 GA- or brassino... 458 e-127
gb|AW922831.1|AW922831 DG1_46_D12.g1_A002 Dark Grown 1 (DG1... 452 e-125
gb|CW299073.1|CW299073 104_781_11462920_148_35657_050 Sorgh... 434 e-120
gb|CX609201.1|CX609201 ANR1_11_F09.b1_A002 Anaerobic roots ... 434 e-120
gb|CX609326.1|CX609326 ANR1_12_B05.b1_A002 Anaerobic roots ... 434 e-120
gb|BG102496.1|BG102496 RHIZ2_33_G06.g1_A003 Rhizome2 (RHIZ2... 432 e-119
gb|CN131128.1|CN131128 RHOH1_46_C04.b1_A002 Acid- and alkal... 426 e-117
gb|CN143916.1|CN143916 WOUND1_19_D07.b1_A002 Wounded leaves... 426 e-117
gb|BG557261.1|BG557261 EM1_44_F08.g1_A002 Embryo 1 (EM1) So... 408 e-112
gb|CF427951.1|CF427951 PH1_11_F08.g1_A002 Phosphorous-defic... 391 e-107
gb|CF428894.1|CF428894 PH1_18_D09.b1_A002 Phosphorous-defic... 389 e-106
gb|BE355210.1|BE355210 DG1_10_F11.g1_A002 Dark Grown 1 (DG1... 379 e-103
gb|CD428029.1|CD428029 ETH1_32_H05.b1_A002 Ethylene-treated... 375 e-102
gb|CN151725.1|CN151725 WOUND1_77_E10.b1_A002 Wounded leaves... 375 e-102
gb|CN140043.1|CN140043 OX1_33_E06.g1_A002 Oxidatively-stres... 373 e-101
gb|BE359944.1|BE359944 DG1_58_G02.g2_A002 Dark Grown 1 (DG1... 371 e-101
gb|CF429943.1|CF429943 PH1_25_F09.b1_A002 Phosphorous-defic... 371 e-101
gb|CW466352.1|CW466352 fsbb001f217i24f0 Sorghum methylation... 363 2e-098
gb|CD236019.1|CD236019 SS1_25_C10.b1_A012 Salt-stressed see... 349 2e-094
gb|CW289115.1|CW289115 104_767_11412305_148_35537_065 Sorgh... 345 4e-093
gb|CX609287.1|CX609287 ANR1_11_F09.g1_A002 Anaerobic roots ... 343 1e-092
gb|CX609406.1|CX609406 ANR1_12_B05.g1_A002 Anaerobic roots ... 343 1e-092
gb|CW299072.1|CW299072 104_781_11462920_116_35661_050 Sorgh... 331 5e-089
gb|CW306937.1|CW306937 104_792_11467109_116_35709_017 Sorgh... 319 2e-085
gb|CN144004.1|CN144004 WOUND1_19_D07.g1_A002 Wounded leaves... 317 8e-085
gb|CN131212.1|CN131212 RHOH1_46_C04.g1_A002 Acid- and alkal... 307 8e-082
gb|CX616545.1|CX616545 GABR1_28_C04.g1_A002 GA- or brassino... 299 2e-079
gb|CF428925.1|CF428925 PH1_18_D09.g1_A002 Phosphorous-defic... 272 4e-071
gb|CW415288.1|CW415288 fsbb001f115f07f0 Sorghum methylation... 258 7e-067
gb|CF429999.1|CF429999 PH1_25_F09.g1_A002 Phosphorous-defic... 258 7e-067
gb|BG558625.1|BG558625 RHIZ2_58_C08.g1_A003 Rhizome2 (RHIZ2... 244 1e-062
gb|CF429486.1|CF429486 PH1_22_C12.b1_A002 Phosphorous-defic... 222 4e-056
gb|CW301138.1|CW301138 104_784_11464043_148_36254_034 Sorgh... 220 1e-055
gb|CW451376.1|CW451376 fsbb001f191g19k0 Sorghum methylation... 220 1e-055
gb|CF431009.1|CF431009 NIT1_4_H09.b1_A002 Nitrogen-deficien... 218 6e-055
gb|CX610800.1|CX610800 ANR1_20_H05.g1_A002 Anaerobic roots ... 218 6e-055
gb|CW120757.1|CW120757 104_498_11109515_148_34653_042 Sorgh... 214 9e-054
gb|CF432176.1|CF432176 NIT1_14_A05.g1_A002 Nitrogen-deficie... 202 3e-050
gb|CD236044.1|CD236044 SS1_25_C10.g1_A012 Salt-stressed see... 168 5e-040
gb|CF428603.1|CF428603 PH1_9_D02.b1_A002 Phosphorous-defici... 168 5e-040
gb|CD226629.1|CD226629 CCC1_47_H10.b1_A007 Callus culture/c... 155 7e-036
gb|BF422202.1|BF422202 FM1_13_B11.g1_A003 Floral-Induced Me... 143 3e-032
gb|CX616082.1|CX616082 GABR1_25_F01.g1_A002 GA- or brassino... 141 1e-031
gb|CF427844.1|CF427844 PH1_11_F08.b1_A002 Phosphorous-defic... 139 4e-031
gb|CW130174.1|CW130174 104_512_11114967_116_34770_056 Sorgh... 129 4e-028
gb|AW924610.1|AW924610 WS1_70_C10.g1_A002 Water-stressed 1 ... 115 6e-024
gb|CL148238.1|CL148238 104_328_10592951_116_31783_075 Sorgh... 111 1e-022
gb|AW564403.1|AW564403 LG1_292_B12.b1_A002 Light Grown 1 (L... 111 1e-022
gb|BG465900.1|BG465900 RHIZ2_46_A05.g1_A003 Rhizome2 (RHIZ2... 111 1e-022
gb|CW257134.1|CW257134 104_722_11227174_116_35151_087 Sorgh... 107 1e-021
gb|AI724073.1|AI724073 RHIZ1_26_F10.y1_A001 Rhizome1 (RHIZ1... 107 1e-021
gb|AW282744.1|AW282744 LG1_292_B12.g1_A002 Light Grown 1 (L... 107 1e-021
gb|AW286181.1|AW286181 LG1_328_E01.g1_A002 Light Grown 1 (L... 107 1e-021
gb|AW924499.1|AW924499 WS1_70_C10.b1_A002 Water-stressed 1 ... 107 1e-021
gb|BE361720.1|BE361720 DG1_81_C01.g1_A002 Dark Grown 1 (DG1... 107 1e-021
gb|BE917851.1|BE917851 OV1_7_H07.g1_A002 Ovary 1 (OV1) Sorg... 107 1e-021
gb|BG559972.1|BG559972 RHIZ2_75_H09.g1_A003 Rhizome2 (RHIZ2... 107 1e-021
gb|CF760782.1|CF760782 DSAF1_66_E10.b1_A011 Drought-stresse... 107 1e-021
gb|CF771208.1|CF771208 DSBF1_15_F05.g1_A010 Drought-stresse... 107 1e-021
gb|BG356869.1|BG356869 OV2_11_A05.g1_A002 Ovary 2 (OV2) Sor... 105 6e-021
gb|BE358216.1|BE358216 DG1_26_F09.b2_A002 Dark Grown 1 (DG1... 101 9e-020
gb|BM317458.1|BM317458 LG1_261_B10.g9_A002 Light Grown 1 (L... 100 4e-019
gb|AI723941.1|AI723941 RHIZ1_36_A09.y1_A001 Rhizome1 (RHIZ1... 98 1e-018
gb|AI724105.1|AI724105 RHIZ1_6_A09.y2_A001 Rhizome1 (RHIZ1)... 98 1e-018
gb|AI724391.1|AI724391 RHIZ1_36_A09.y2_A001 Rhizome1 (RHIZ1... 98 1e-018
gb|AW922411.1|AW922411 DG1_18_D01.g1_A002 Dark Grown 1 (DG1... 82 9e-014
gb|CD428137.1|CD428137 ETH1_32_H05.g1_A002 Ethylene-treated... 78 1e-012
gb|CD226724.1|CD226724 CCC1_47_H10.g1_A007 Callus culture/c... 76 5e-012
gb|AI724199.1|AI724199 RHIZ1_8_E06.y2_A001 Rhizome1 (RHIZ1)... 68 1e-009
gb|CL148239.1|CL148239 104_328_10592951_148_31782_075 Sorgh... 64 2e-008
gb|CF761780.1|CF761780 DSAF1_80_G11.g1_A011 Drought-stresse... 64 2e-008
gb|CW120756.1|CW120756 104_498_11109515_116_34649_042 Sorgh... 62 8e-008
gb|BE359862.1|BE359862 DG1_58_G02.b2_A002 Dark Grown 1 (DG1... 62 8e-008
gb|BF422262.1|BF422262 FM1_13_B11.b1_A003 Floral-Induced Me... 62 8e-008
gb|BI099395.1|BI099395 IP1_41_F02.g1_A002 Immature pannicle... 62 8e-008
gb|BG357198.1|BG357198 OV2_11_A05.b1_A002 Ovary 2 (OV2) Sor... 58 1e-006
gb|AW922606.1|AW922606 DG1_46_D12.b1_A002 Dark Grown 1 (DG1... 52 8e-005
gb|CW030005.1|CW030005 104_257_10499999_116_30402 Sorghum m... 50 3e-004
gb|CW143823.1|CW143823 104_535_11137619_116_34954_036 Sorgh... 50 3e-004
gb|CW143824.1|CW143824 104_535_11137619_148_34958_036 Sorgh... 50 3e-004
gb|CW205284.1|CW205284 104_633_11186988_148_36927_038 Sorgh... 50 3e-004
gb|AW923729.1|AW923729 DG1_58_G02.g1_A002 Dark Grown 1 (DG1... 50 3e-004
gb|BE362164.1|BE362164 DG1_84_F03.g1_A002 Dark Grown 1 (DG1... 50 3e-004
gb|BF422100.1|BF422100 FM1_12_H05.g1_A003 Floral-Induced Me... 50 3e-004
gb|BG487539.1|BG487539 EM1_67_C06.b1_A002 Embryo 1 (EM1) So... 50 3e-004
gb|CD235680.1|CD235680 SS1_37_G02.b1_A012 Salt-stressed see... 50 3e-004
gb|BE361634.1|BE361634 DG1_81_C01.b1_A002 Dark Grown 1 (DG1... 48 0.001
gb|CN151800.1|CN151800 WOUND1_77_E10.g1_A002 Wounded leaves... 46 0.005
gb|CL148054.1|CL148054 104_327_10592824_116_31781_332 Sorgh... 44 0.019
gb|CW219580.1|CW219580 104_653_11196859_116_37141_068 Sorgh... 44 0.019
gb|CW095923.1|CW095923 104_461_11001605_116_34332_025 Sorgh... 42 0.073
gb|CW095924.1|CW095924 104_461_11001605_148_34328_025 Sorgh... 42 0.073
gb|CL190655.1|CL190655 104_409_10906227_116_32496_016 Sorgh... 40 0.29
gb|CW128842.1|CW128842 104_510_11114239_116_34758_022 Sorgh... 40 0.29
gb|CW436489.1|CW436489 fsbb001f153b24f0 Sorghum methylation... 40 0.29
gb|CW497689.1|CW497689 fsbb001f290j02k0 Sorghum methylation... 40 0.29
gb|BF587110.1|BF587110 FM1_32_C12.b1_A003 Floral-Induced Me... 40 0.29
gb|BG559633.1|BG559633 RHIZ2_71_E10.g1_A003 Rhizome2 (RHIZ2... 40 0.29
gb|CD204106.1|CD204106 HS1_3_A03.g1_A012 Heat-shocked seedl... 40 0.29
gb|CD462475.1|CD462475 ETH1_37_F12.g1_A002 Ethylene-treated... 40 0.29
gb|CN128015.1|CN128015 RHOH1_26_A11.g1_A002 Acid- and alkal... 40 0.29
>gb|BZ779779.1|BZ779779 ii34e07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii34e07, DNA sequence
Length = 670
Score = 529 bits (267), Expect = e-148
Identities = 374/409 (91%), Gaps = 3/409 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 528
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 527 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 468
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 467 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 411
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 410 cgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcgatgggca 351
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 291
Query: 628 gcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgt 687
|| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 290 gcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatgaagaggttgt 231
Query: 688 cgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
| ||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 230 ccaccttgaacaggatgttcgtagggttccagatgatggtgtaggtgtg 182
>gb|CW301137.1|CW301137 104_784_11464043_116_36253_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464043, DNA
sequence
Length = 655
Score = 529 bits (267), Expect = e-148
Identities = 374/409 (91%), Gaps = 3/409 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 374
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 373 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 314
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 313 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 257
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 256 cgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcgatgggca 197
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 137
Query: 628 gcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgt 687
|| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 136 gcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatgaagaggttgt 77
Query: 688 cgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
| ||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 76 ccaccttgaacaggatgttcgtagggttccagatgatggtgtaggtgtg 28
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 591 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 536
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 535 aataagaatcatataccc 518
>gb|CW063398.1|CW063398 104_309_10521981_114_30134 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521981, DNA
sequence
Length = 654
Score = 521 bits (263), Expect = e-146
Identities = 370/405 (91%), Gaps = 3/405 (0%)
Strand = Plus / Plus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 254
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 255 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 314
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 315 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 371
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 372 cgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcgatgggca 431
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 491
Query: 628 gcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgt 687
|| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 492 gcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatgaagaggttgt 551
Query: 688 cgaccttgaacaggatgctggtcgggttccagatgatggtgtagg 732
| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 552 ccaccttgaacaggatgttcgtagggttccagatgatggtgtagg 596
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 37 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 92
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 93 aataagaatcatataccc 110
>gb|CW451375.1|CW451375 fsbb001f191g19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191g19, DNA
sequence
Length = 624
Score = 515 bits (260), Expect = e-144
Identities = 374/410 (91%), Gaps = 4/410 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccaccc-atcctggcag 386
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 566 atcagtggcggctgcactcggcggggagtccttgcgggaacctccaccccatcctggcag 507
Query: 387 tagttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtca 446
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 506 tagttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcg 447
Query: 447 agctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcag 506
|||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 446 agctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcag 390
Query: 507 gcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccg 566
||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 389 gcgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcgatgggc 330
Query: 567 accctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatg 626
| | |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatg 270
Query: 627 ggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcg 686
||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
Sbjct: 269 ggcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatgaagaggttg 210
Query: 687 tcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
|| ||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 209 tccaccttgaacaggatgttcgtagggttccagatgatggtgtaggtgtg 160
>gb|BZ779778.1|BZ779778 ii34e07.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii34e07, DNA sequence
Length = 647
Score = 502 bits (253), Expect = e-140
Identities = 367/403 (91%), Gaps = 4/403 (0%)
Strand = Plus / Plus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 307
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 308 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 367
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 368 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 424
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 425 cgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcgatgggca 484
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgt-gcagcgtcatg 626
| |||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 485 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgttgcagcgtcatg 544
Query: 627 ggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcg 686
||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
Sbjct: 545 ggcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatgaagaggttg 604
Query: 687 tcgaccttgaacaggatgctggtcgggttccagatgatggtgt 729
|| ||||||||||||||| | || |||||||||||||||||||
Sbjct: 605 tccaccttgaacaggatgttcgtagggttccagatgatggtgt 647
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 90 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 145
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 146 aataagaatcatataccc 163
>gb|CN139961.1|CN139961 OX1_33_E06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_E06_A002 3', mRNA sequence
Length = 639
Score = 494 bits (249), Expect = e-138
Identities = 365/403 (90%), Gaps = 3/403 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 341
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 340 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 281
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 280 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 224
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||||||||||||||||||||| || |||||| |||||||||||||| |
Sbjct: 223 cgttggcggcgtagctgcggtaggagacgacaaaaggcgcgccggaccagtcgatgggca 164
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 104
Query: 628 gcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgt 687
|| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 103 gcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatgaagaggttgt 44
Query: 688 cgaccttgaacaggatgctggtcgggttccagatgatggtgta 730
| ||||||||||||||| | || |||||||| |||||||||||
Sbjct: 43 ccaccttgaacaggatgttcgtagggttccaaatgatggtgta 1
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 558 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 503
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 502 aataagaatcatataccc 485
>gb|CX616461.1|CX616461 GABR1_28_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_28_C04_A002 3', mRNA sequence
Length = 587
Score = 458 bits (231), Expect = e-127
Identities = 341/377 (90%), Gaps = 3/377 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 316
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |
Sbjct: 315 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccgctcggcgttgtcga 256
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 255 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 199
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 198 cgttggcggcgtaactgcggtaggagacgacgaagggcgcgccggaccagtcgatgggca 139
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 79
Query: 628 gcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgt 687
|| ||||||||||||| | |||||||||||| ||||||||||| ||||||| ||||| ||
Sbjct: 78 gcttggagctcgggtaggccaggtcggcgtaacgcttgaaggaccggatgaggaggttgt 19
Query: 688 cgaccttgaacaggatg 704
| |||||||||||||||
Sbjct: 18 ccaccttgaacaggatg 2
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 533 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 478
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 477 aataagaatcatataccc 460
>gb|AW922831.1|AW922831 DG1_46_D12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 581
Score = 452 bits (228), Expect = e-125
Identities = 320/350 (91%), Gaps = 3/350 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 288
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 287 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 228
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 227 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 171
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 170 cgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcgatgggca 111
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 51
Query: 628 gcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatg 677
|| ||||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 50 gcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatg 1
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 505 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 450
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 449 aataagaatcatataccc 432
>gb|CW299073.1|CW299073 104_781_11462920_148_35657_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462920, DNA
sequence
Length = 623
Score = 434 bits (219), Expect = e-120
Identities = 338/377 (89%), Gaps = 3/377 (0%)
Strand = Plus / Plus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 106 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 165
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 166 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 225
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 226 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 282
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 283 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 342
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 343 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 402
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccag 719
||||||||| |||||| | | |||||| |||||||| |||||| ||||||||||||||
Sbjct: 403 cgcttgaagacgcggatcacgttgtcgtccaccttgaagaggatgttggtcgggttccag 462
Query: 720 atgatggtgtaggtgtg 736
|||||||||||||||||
Sbjct: 463 atgatggtgtaggtgtg 479
>gb|CX609201.1|CX609201 ANR1_11_F09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_F09_A002 3', mRNA sequence
Length = 665
Score = 434 bits (219), Expect = e-120
Identities = 338/377 (89%), Gaps = 3/377 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 376 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 317
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 316 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 257
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 256 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 200
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 199 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 140
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 139 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 80
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccag 719
||||||||| |||||| | | |||||| |||||||| |||||| ||||||||||||||
Sbjct: 79 cgcttgaagacgcggatcacgttgtcgtccaccttgaagaggatgttggtcgggttccag 20
Query: 720 atgatggtgtaggtgtg 736
|||||||||||||||||
Sbjct: 19 atgatggtgtaggtgtg 3
>gb|CX609326.1|CX609326 ANR1_12_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_12_B05_A002 3', mRNA sequence
Length = 684
Score = 434 bits (219), Expect = e-120
Identities = 338/377 (89%), Gaps = 3/377 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 391 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 332
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 331 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 272
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 271 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 215
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 214 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 155
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 154 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 95
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccag 719
||||||||| |||||| | | |||||| |||||||| |||||| ||||||||||||||
Sbjct: 94 cgcttgaagacgcggatcacgttgtcgtccaccttgaagaggatgttggtcgggttccag 35
Query: 720 atgatggtgtaggtgtg 736
|||||||||||||||||
Sbjct: 34 atgatggtgtaggtgtg 18
>gb|BG102496.1|BG102496 RHIZ2_33_G06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 432 bits (218), Expect = e-119
Identities = 307/336 (91%), Gaps = 3/336 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 274
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct: 273 agttgtagcgcatgaagttcttctccgcccacctgacggttccccactcggcgctgtcga 214
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | |||| |||| |||||||||||||||||||||||||
Sbjct: 213 gctgcctgtgcatccacccgtccctgc---cggcacggcacgcgccgccgctgacgcagg 157
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| |||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 156 cgttggcggagtagctgcggtaggagacgacgaagggcgcgccagaccagtcgatgggca 97
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 37
Query: 628 gcctggagctcgggtacggcaggtcggcgtagcgct 663
|| |||||||||| || | |||||||||||||||||
Sbjct: 36 gcttggagctcggataggccaggtcggcgtagcgct 1
Score = 89.7 bits (45), Expect = 3e-016
Identities = 84/96 (87%), Gaps = 7/96 (7%)
Strand = Plus / Minus
Query: 180 ggaaaagctaggtgtacaacaaccgcccacacgttgctagctgcagggctgctttttaat 239
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 517 ggaaaaactaggtgt---acaaccgcccacacgtt----tctgcagggctgctttttaat 465
Query: 240 cacaaatccacaaagaagagcaagaatcatataccc 275
||||||| ||||||| ||| ||||||||||||||||
Sbjct: 464 cacaaattcacaaagtagaacaagaatcatataccc 429
>gb|CN131128.1|CN131128 RHOH1_46_C04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_C04_A002 3', mRNA sequence
Length = 600
Score = 426 bits (215), Expect = e-117
Identities = 337/377 (89%), Gaps = 3/377 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 381 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 322
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 321 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 262
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 261 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 205
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 204 aagggcgcgccggaccagccgatgggcaccttgcccttctcggtggcccagtagctgccg 145
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 144 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 85
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccag 719
||||||||| |||||| | | |||||| |||||||| |||||| ||||||||||||||
Sbjct: 84 cgcttgaagacgcggatcacgttgtcgtccaccttgaagaggatgttggtcgggttccag 25
Query: 720 atgatggtgtaggtgtg 736
|||||||||||||||||
Sbjct: 24 atgatggtgtaggtgtg 8
>gb|CN143916.1|CN143916 WOUND1_19_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_19_D07_A002 3', mRNA sequence
Length = 682
Score = 426 bits (215), Expect = e-117
Identities = 337/377 (89%), Gaps = 3/377 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 436 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 377
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||
Sbjct: 376 ttgacggtgccccactcggcgctgccaggctgcttgttcatccacgcgccgctgccggcg 317
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 316 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 260
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 259 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 200
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 199 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 140
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccag 719
||||||||| |||||| | | |||||| |||||||| |||||| ||||||||||||||
Sbjct: 139 cgcttgaagacgcggatcacgttgtcgtccaccttgaagaggatgttggtcgggttccag 80
Query: 720 atgatggtgtaggtgtg 736
|||||||||||||||||
Sbjct: 79 atgatggtgtaggtgtg 63
>gb|BG557261.1|BG557261 EM1_44_F08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 408 bits (206), Expect = e-112
Identities = 289/316 (91%), Gaps = 3/316 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 260
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 259 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 200
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 199 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 143
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 142 cgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcgatgggca 83
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 23
Query: 628 gcctggagctcgggta 643
|| |||||||||||||
Sbjct: 22 gcttggagctcgggta 7
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 477 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 422
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 421 aataagaatcatataccc 404
>gb|CF427951.1|CF427951 PH1_11_F08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_11_F08_A002 5', mRNA sequence
Length = 623
Score = 391 bits (197), Expect = e-107
Identities = 316/355 (89%), Gaps = 3/355 (0%)
Strand = Plus / Plus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 272 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 331
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 332 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 391
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 392 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 448
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 449 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 508
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 509 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 568
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggt 714
||||||||| |||||| | | |||||| |||||||| |||||| |||||||||
Sbjct: 569 cgcttgaagacgcggatcacgttgtcgtccaccttgaagaggatgttggtcgggt 623
>gb|CF428894.1|CF428894 PH1_18_D09.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_D09_A002 3', mRNA sequence
Length = 547
Score = 389 bits (196), Expect = e-106
Identities = 276/302 (91%), Gaps = 3/302 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 244
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 243 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 184
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 183 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctgacgcagg 127
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 126 cgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcgatgggca 67
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 7
Query: 628 gc 629
||
Sbjct: 6 gc 5
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 461 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 406
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 405 aataagaatcatataccc 388
>gb|BE355210.1|BE355210 DG1_10_F11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 379 bits (191), Expect = e-103
Identities = 307/345 (88%), Gaps = 3/345 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 343 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 284
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 283 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 224
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 223 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 167
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 166 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 107
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 106 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 47
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatg 704
||||||||| |||||| | | |||||| |||||||| ||||||
Sbjct: 46 cgcttgaagacgcggatcacgttgtcgtccaccttgaagaggatg 2
>gb|CD428029.1|CD428029 ETH1_32_H05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_32_H05_A002 3', mRNA sequence
Length = 599
Score = 375 bits (189), Expect = e-102
Identities = 314/355 (88%), Gaps = 3/355 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 352 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 293
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 292 ttggcggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 233
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 232 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 176
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 175 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 116
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 115 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 56
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggt 714
|||||| || |||||| | | |||||| |||||||| |||||| |||||||||
Sbjct: 55 cgcttggagacgcggatcacgttgtcgtccaccttgaagaggatgttggtcgggt 1
>gb|CN151725.1|CN151725 WOUND1_77_E10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_77_E10_A002 3', mRNA sequence
Length = 565
Score = 375 bits (189), Expect = e-102
Identities = 317/359 (88%), Gaps = 3/359 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 356 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 297
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 296 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 237
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 236 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 180
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 179 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 120
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct: 119 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtaa 60
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttcca 718
||||||||| |||||| | ||| || |||||||| |||||| |||||||||||||
Sbjct: 59 cgcttgaagacgcggatcaccttgtcatccaccttgaaaaggatgttggtcgggttcca 1
>gb|CN140043.1|CN140043 OX1_33_E06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_E06_A002 5', mRNA sequence
Length = 800
Score = 373 bits (188), Expect = e-101
Identities = 282/313 (90%), Gaps = 3/313 (0%)
Strand = Plus / Minus
Query: 424 cggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcggccc 483
||||||||||||||||| |||| |||||||||| |||||||||| | ||||||| |
Sbjct: 800 cggtgccccactcggcgttgtcgagctgcctgtgcatccacccgtccctgccggta---c 744
Query: 484 ggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagg 543
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 743 ggcacgcgccgccgctgacgcaggcgtnggcggcgtagctgcggtaggagacgacgaagg 684
Query: 544 gcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccgtccc 603
||||| |||||||||||||| | | |||||||||| || |||||||||||||||||||
Sbjct: 683 gcgcgccggaccagtcgatgggcatcttgcccttctccgtcgcccagtagctgccgtccc 624
Query: 604 acagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgct 663
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct: 623 acagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtagcgct 564
Query: 664 tgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccagatga 723
||||||| ||||||||||||| ||| ||||||||||||||| | || |||||||||||||
Sbjct: 563 tgaaggaccggatgaagaggttgtccaccttgaacaggatgttcgtagggttccagatga 504
Query: 724 tggtgtaggtgtg 736
|||||||||||||
Sbjct: 503 tggtgtaggtgtg 491
>gb|BE359944.1|BE359944 DG1_58_G02.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 375
Score = 371 bits (187), Expect = e-101
Identities = 279/309 (90%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 316 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 257
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 256 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 197
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 196 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 140
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 139 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 80
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 79 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 20
Query: 660 cgcttgaag 668
|||||||||
Sbjct: 19 cgcttgaag 11
>gb|CF429943.1|CF429943 PH1_25_F09.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_F09_A002 3', mRNA sequence
Length = 604
Score = 371 bits (187), Expect = e-101
Identities = 279/309 (90%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 334 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 275
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 274 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 215
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 214 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 158
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 157 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 98
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 97 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 38
Query: 660 cgcttgaag 668
|||||||||
Sbjct: 37 cgcttgaag 29
>gb|CW466352.1|CW466352 fsbb001f217i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f217i24, DNA
sequence
Length = 386
Score = 363 bits (183), Expect = 2e-098
Identities = 278/309 (89%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | |||||||| |||||||||| |||||| ||| ||||||
Sbjct: 308 tgcgggaacctccagccgtcgtcgcagtagtggtagcgcatgtagttgctctcggcccac 249
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 248 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 189
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 188 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 132
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 131 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 72
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 71 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 12
Query: 660 cgcttgaag 668
|||||||||
Sbjct: 11 cgcttgaag 3
>gb|CD236019.1|CD236019 SS1_25_C10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_25_C10_A012 3', mRNA sequence
Length = 597
Score = 349 bits (176), Expect = 2e-094
Identities = 268/298 (89%), Gaps = 3/298 (1%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 295 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 236
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 235 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 176
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 175 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 119
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 118 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 59
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgt 657
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct: 58 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgt 1
>gb|CW289115.1|CW289115 104_767_11412305_148_35537_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412305, DNA
sequence
Length = 426
Score = 345 bits (174), Expect = 4e-093
Identities = 266/296 (89%), Gaps = 3/296 (1%)
Strand = Plus / Plus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 134 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 193
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 194 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 253
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 254 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 310
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccg 599
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 311 aagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcccagtagctgccg 370
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggc 655
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct: 371 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggc 426
>gb|CX609287.1|CX609287 ANR1_11_F09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_F09_A002 5', mRNA sequence
Length = 810
Score = 343 bits (173), Expect = 1e-092
Identities = 268/299 (89%), Gaps = 3/299 (1%)
Strand = Plus / Minus
Query: 438 gcgctgtcaagctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccg 497
||||||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 810 gcgctgtcaggctgcttgttcatccacgcgccgctgccggcggc---gcaggcgccgccg 754
Query: 498 ctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccag 557
|||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 753 ctgacgcaggcgtcggcggagtagcctttgtaggagacgacgaagggcgcgccggaccag 694
Query: 558 tcgatgccgaccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgc 617
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcgatgggcaccttgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgc 634
Query: 618 agcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatg 677
|||||||||||| ||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct: 633 agcgtcatgggcttggagctcgggtaggccaggtcggcgtagcgcttgaagacgcggatc 574
Query: 678 aagaggtcgtcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
| | |||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 573 acgttgtcgtccaccttgaagaggatgttggtcgggttccagatgatggtgtaggtgtg 515
>gb|CX609406.1|CX609406 ANR1_12_B05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_12_B05_A002 5', mRNA sequence
Length = 826
Score = 343 bits (173), Expect = 1e-092
Identities = 268/299 (89%), Gaps = 3/299 (1%)
Strand = Plus / Minus
Query: 438 gcgctgtcaagctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccg 497
||||||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 826 gcgctgtcaggctgcttgttcatccacgcgccgctgccggcggc---gcaggcgccgccg 770
Query: 498 ctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccag 557
|||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 769 ctgacgcaggcgtcggcggagtagcctttgtaggagacgacgaagggcgcgccggaccag 710
Query: 558 tcgatgccgaccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgc 617
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tcgatgggcaccttgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgc 650
Query: 618 agcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatg 677
|||||||||||| ||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct: 649 agcgtcatgggcttggagctcgggtaggccaggtcggcgtagcgcttgaagacgcggatc 590
Query: 678 aagaggtcgtcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
| | |||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 589 acgttgtcgtccaccttgaagaggatgttggtcgggttccagatgatggtgtaggtgtg 531
>gb|CW299072.1|CW299072 104_781_11462920_116_35661_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462920, DNA
sequence
Length = 655
Score = 331 bits (167), Expect = 5e-089
Identities = 269/301 (89%), Gaps = 4/301 (1%)
Strand = Plus / Minus
Query: 436 cggcgctgtcaagctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgc 495
||||||||||| ||||| ||||||||||| |||||| ||||||||| ||| |||||||
Sbjct: 655 cggcgctgtcaggctgcttgttcatccacgcgccgcagccggcggc---gcaggcgccgc 599
Query: 496 cgctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacc 555
|||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||
Sbjct: 598 cgctgacgcaggcgtcggcggagtagc-cttgtaggagacgacgaagggcgcgccggacc 540
Query: 556 agtcgatgccgaccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgt 615
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agtcgatgggcaccttgcccttctcggtggcccagtagctgccgtcccacagcgtggcgt 480
Query: 616 gcagcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcgga 675
|||||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||
Sbjct: 479 gcagcgtcatgggcttggagctcgggtaggccaggtcggcgtagcgcttgaagacgcgga 420
Query: 676 tgaagaggtcgtcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgt 735
| | | |||||| |||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 419 tcacgttgtcgtccaccttgaagaggatgttggtcgggttccagatgatggtgtaggtgt 360
Query: 736 g 736
|
Sbjct: 359 g 359
>gb|CW306937.1|CW306937 104_792_11467109_116_35709_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11467109, DNA
sequence
Length = 702
Score = 319 bits (161), Expect = 2e-085
Identities = 221/241 (91%)
Strand = Plus / Minus
Query: 496 cgctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacc 555
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 702 cgctgacgcaggcgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggacc 643
Query: 556 agtcgatgccgaccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgt 615
|||||||| | | |||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 642 agtcgatgggcatcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgt 583
Query: 616 gcagcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcgga 675
|||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct: 582 gcagcgtcatgggcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccgga 523
Query: 676 tgaagaggtcgtcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgt 735
||||||||| ||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct: 522 tgaagaggttgtccaccttgaacaggatgttcgtagggttccagatgatggtgtaggtgt 463
Query: 736 g 736
|
Sbjct: 462 g 462
>gb|CN144004.1|CN144004 WOUND1_19_D07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_19_D07_A002 5', mRNA sequence
Length = 804
Score = 317 bits (160), Expect = 8e-085
Identities = 249/278 (89%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 459 atccacccgccgctgccggcggcccggcacgcgccgccgctgacgcaggcgctggcgtag 518
|||||| |||||||||||||||| ||| ||||||||||||||||||||| |||| ||
Sbjct: 804 atccacgcgccgctgccggcggc---gcaggcgccgccgctgacgcaggcgtcggcggag 748
Query: 519 tagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttc 578
|||| |||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 747 tagcctttgtaggagacgacgaagggcgcgccggaccagtcgatgggcaccttgcccttc 688
Query: 579 tcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctc 638
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 687 tcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcttggagctc 628
Query: 639 gggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgaccttgaac 698
||||| | |||||||||||||||||||||| |||||| | | |||||| ||||||||
Sbjct: 627 gggtaggccaggtcggcgtagcgcttgaagacgcggatcacgttgtcgtccaccttgaag 568
Query: 699 aggatgctggtcgggttccagatgatggtgtaggtgtg 736
|||||| |||||||||||||||||||||||||||||||
Sbjct: 567 aggatgttggtcgggttccagatgatggtgtaggtgtg 530
>gb|CN131212.1|CN131212 RHOH1_46_C04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_C04_A002 5', mRNA sequence
Length = 806
Score = 307 bits (155), Expect = 8e-082
Identities = 247/277 (89%), Gaps = 3/277 (1%)
Strand = Plus / Minus
Query: 460 tccacccgccgctgccggcggcccggcacgcgccgccgctgacgcaggcgctggcgtagt 519
||||| |||||||||||||||| ||| ||||||||||||||||||||| |||| |||
Sbjct: 806 tccacgcgccgctgccggcggc---gcaggcgccgccgctgacgcaggcgtcggcggagt 750
Query: 520 agctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttct 579
||| |||||||||||||||||||||| |||||||| ||||| ||| |||||||||
Sbjct: 749 agcctttgtaggagacgacgaagggcgcgccggaccagccgatgggcaccttgcccttct 690
Query: 580 cggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcg 639
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 689 cggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcttggagctcg 630
Query: 640 ggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgaccttgaaca 699
|||| | |||||||||||||||||||||| |||||| | | |||||| |||||||| |
Sbjct: 629 ggtaggccaggtcggcgtagcgcttgaagacgcggatcacgttgtcgtccaccttgaaga 570
Query: 700 ggatgctggtcgggttccagatgatggtgtaggtgtg 736
||||| |||||||||||||||||||||||||||||||
Sbjct: 569 ggatgttggtcgggttccagatgatggtgtaggtgtg 533
>gb|CX616545.1|CX616545 GABR1_28_C04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_28_C04_A002 5', mRNA sequence
Length = 725
Score = 299 bits (151), Expect = 2e-079
Identities = 214/235 (91%)
Strand = Plus / Minus
Query: 502 cgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcga 561
|||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 725 cgcaggcgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcga 666
Query: 562 tgccgaccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcg 621
|| | | |||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgggcatcttgcccttctccgtcgcccagtagctgccgtcccacagcgtggcgtgcagcg 606
Query: 622 tcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaaga 681
|||||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| ||
Sbjct: 605 tcatgggcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatgagga 546
Query: 682 ggtcgtcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
||| ||| ||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 545 ggttgtccaccttgaacaggatgttcgtagggttccagatgatggtgtaggtgtg 491
>gb|CF428925.1|CF428925 PH1_18_D09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_D09_A002 5', mRNA sequence
Length = 751
Score = 272 bits (137), Expect = 4e-071
Identities = 214/237 (90%), Gaps = 2/237 (0%)
Strand = Plus / Minus
Query: 502 cgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcga 561
|||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 751 cgcaggcgttggcggcgtagctgcggtaggagacgacgaagggcgcgccggaccagtcga 692
Query: 562 tgccgaccctgcccttctcggt-ggcccagtagctgccgtcccacagcgtggcgtgcagc 620
|| | | |||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 691 tgggcatcttgcccttctccgtcgggccagtagctgccgtcccacagcgtggcgtgcagc 632
Query: 621 gtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaag 680
||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct: 631 gtcatgggcttggagctcgggtaggccaggtcggcgtagcgcttgaaggaccggatgaag 572
Query: 681 aggtcgtcgaccttgaa-caggatgctggtcgggttccagatgatggtgtaggtgtg 736
|||| ||| |||| ||| ||||||| | || ||||||||||||||||||||||||||
Sbjct: 571 aggttgtccacctagaaccaggatgttcgtagggttccagatgatggtgtaggtgtg 515
>gb|CW415288.1|CW415288 fsbb001f115f07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f115f07, DNA
sequence
Length = 325
Score = 258 bits (130), Expect = 7e-067
Identities = 190/210 (90%)
Strand = Plus / Minus
Query: 527 gtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggc 586
|||||||||| ||||||||||| |||||||||||||| | |||||||||| || ||
Sbjct: 325 gtaggagacgccgaagggcgcgccggaccagtcgatgggcatgttgcccttctccgtcgc 266
Query: 587 ccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacgg 646
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct: 265 ccagtagctgccgtcccacagggtggcgtgcagcgtcatgggcttggagctcgggtaggc 206
Query: 647 caggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgct 706
|||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
Sbjct: 205 caggtcggcgtagcgcttgaaggaccggatgaagaggttgtccaccttgaacaggatgtt 146
Query: 707 ggtcgggttccagatgatggtgtaggtgtg 736
|| ||||||||||||||||||||||||||
Sbjct: 145 cgtagggttccagatgatggtgtaggtgtg 116
>gb|CF429999.1|CF429999 PH1_25_F09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_F09_A002 5', mRNA sequence
Length = 764
Score = 258 bits (130), Expect = 7e-067
Identities = 191/210 (90%), Gaps = 1/210 (0%)
Strand = Plus / Minus
Query: 528 taggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcc 587
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct: 748 taggagacgacgaagggcgcgccggaccagtcgatgggcaccttgcccttctcggtggcc 689
Query: 588 cagtagctgccgtcccacagc-gtggcgtgcagcgtcatgggcctggagctcgggtacgg 646
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct: 688 cagtagctgccgtcccacagcngtggcgtgcagcgtcatgggcttggagctcgggtaggc 629
Query: 647 caggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgct 706
|||||||||||||||||||||| |||||| | | |||||| |||||||| | |||| |
Sbjct: 628 caggtcggcgtagcgcttgaagacgcggatcacgttgtcgtccaccttgaagaagatgtt 569
Query: 707 ggtcgggttccagatgatggtgtaggtgtg 736
||||||||||||||||||||||||||||||
Sbjct: 568 ggtcgggttccagatgatggtgtaggtgtg 539
>gb|BG558625.1|BG558625 RHIZ2_58_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 430
Score = 244 bits (123), Expect = 1e-062
Identities = 167/181 (92%), Gaps = 3/181 (1%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 119
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct: 118 agttgtagcgcatgaagttcttctccgcccacctgacggttccccactcggcgctgtcga 59
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
||||||||| |||||||||| | |||| |||| |||||||||||||||||||||||||
Sbjct: 58 gctgcctgtgcatccacccgtccctgc---cggcacggcacgcgccgccgctgacgcagg 2
Query: 508 c 508
|
Sbjct: 1 c 1
Score = 89.7 bits (45), Expect = 3e-016
Identities = 84/96 (87%), Gaps = 7/96 (7%)
Strand = Plus / Minus
Query: 180 ggaaaagctaggtgtacaacaaccgcccacacgttgctagctgcagggctgctttttaat 239
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 362 ggaaaaactaggtgt---acaaccgcccacacgtt----tctgcagggctgctttttaat 310
Query: 240 cacaaatccacaaagaagagcaagaatcatataccc 275
||||||| ||||||| ||| ||||||||||||||||
Sbjct: 309 cacaaattcacaaagtagaacaagaatcatataccc 274
>gb|CF429486.1|CF429486 PH1_22_C12.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_22_C12_A002 3', mRNA sequence
Length = 510
Score = 222 bits (112), Expect = 4e-056
Identities = 195/222 (87%), Gaps = 3/222 (1%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 219 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 160
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct: 159 ttgacggtgccccactcggcgctgtcaagctgcttgttcatccacgcgccgctgcgggcg 100
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 99 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 43
Query: 540 aagggcgcgtcggaccagtcgatgccgaccctgcccttctcg 581
||||||||| |||||||||||||| ||| |||||||||||
Sbjct: 42 aagggcgcgccggaccagtcgatgggcaccttgcccttctcg 1
>gb|CW301138.1|CW301138 104_784_11464043_148_36254_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464043, DNA
sequence
Length = 610
Score = 220 bits (111), Expect = 1e-055
Identities = 158/173 (91%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 500
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 501 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 560
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctg 500
||||||||| |||||||||| | ||||||| ||||||||||||||||||
Sbjct: 561 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctg 610
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 283 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 338
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 339 aataagaatcatataccc 356
>gb|CW451376.1|CW451376 fsbb001f191g19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191g19, DNA
sequence
Length = 643
Score = 220 bits (111), Expect = 1e-055
Identities = 158/173 (91%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 533
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 534 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 593
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctg 500
||||||||| |||||||||| | ||||||| ||||||||||||||||||
Sbjct: 594 gctgcctgtgcatccacccgtccctgccggta---cggcacgcgccgccgctg 643
Score = 81.8 bits (41), Expect = 9e-014
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 316 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcacaaagtag 371
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 372 aataagaatcatataccc 389
>gb|CF431009.1|CF431009 NIT1_4_H09.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_H09_A002 3', mRNA sequence
Length = 402
Score = 218 bits (110), Expect = 6e-055
Identities = 140/150 (93%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atcagtggcggctgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 96
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 95 agttgtagcgcatgaagttcttctccgcccacctgacggtgccccactcggcgttgtcga 36
Query: 448 gctgcctgttcatccacccgccgctgccgg 477
||||||||| |||||||||| | |||||||
Sbjct: 35 gctgcctgtgcatccacccgtccctgccgg 6
Score = 73.8 bits (37), Expect = 2e-011
Identities = 68/78 (87%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 198 acaaccgcccacacgttgctagctgcagggctgctttttaatcacaaatccacaaagaag 257
||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||
Sbjct: 313 acaaccgcccacacgtt----tctgcagggctgctttttaatcacaaattcccaaagtag 258
Query: 258 agcaagaatcatataccc 275
| |||||||||||||||
Sbjct: 257 aataagaatcatataccc 240
>gb|CX610800.1|CX610800 ANR1_20_H05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_20_H05_A002 5', mRNA sequence
Length = 676
Score = 218 bits (110), Expect = 6e-055
Identities = 146/158 (92%)
Strand = Plus / Minus
Query: 579 tcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctc 638
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 676 tcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcttggagctc 617
Query: 639 gggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgaccttgaac 698
||||| | |||||||||||||||||||||| |||||| | | |||||| ||||||||
Sbjct: 616 gggtaggccaggtcggcgtagcgcttgaagacgcggatcacgttgtcgtccaccttgaag 557
Query: 699 aggatgctggtcgggttccagatgatggtgtaggtgtg 736
|||||| |||||||||||||||||||||||||||||||
Sbjct: 556 aggatgttggtcgggttccagatgatggtgtaggtgtg 519
>gb|CW120757.1|CW120757 104_498_11109515_148_34653_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109515, DNA
sequence
Length = 679
Score = 214 bits (108), Expect = 9e-054
Identities = 135/144 (93%)
Strand = Plus / Minus
Query: 525 cggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtg 584
|||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 158 cggtaggagacgacgaagggcgcgcgggaccagtcgatgggcaccttgcccttctcggtg 99
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtac 644
|||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct: 98 gcccagtagctgccgtcccacagcgtggcgtgcaccgccatgggcttggagctcgggtac 39
Query: 645 ggcaggtcggcgtagcgcttgaag 668
||||||||||||||||||||||||
Sbjct: 38 ggcaggtcggcgtagcgcttgaag 15
Score = 61.9 bits (31), Expect = 8e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
|||||| ||||||||||||| |||||| || |||||||| | |||||| |||| |||||
Sbjct: 379 atcagttgcgggcgcactcgccggggaacccctgcgggaagcgccacccgtcctcgcagt 320
Query: 388 agttgta 394
|||||||
Sbjct: 319 agttgta 313
>gb|CF432176.1|CF432176 NIT1_14_A05.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_14_A05_A002 5', mRNA sequence
Length = 440
Score = 202 bits (102), Expect = 3e-050
Identities = 173/196 (88%), Gaps = 3/196 (1%)
Strand = Plus / Plus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 248 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 307
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 308 ttgacggtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 367
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg 539
|| ||| ||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 368 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagcctttgtaggagacgacg 424
Query: 540 aagggcgcgtcggacc 555
||||||||| ||||||
Sbjct: 425 aagggcgcgccggacc 440
>gb|CD236044.1|CD236044 SS1_25_C10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_25_C10_A012 5', mRNA sequence
Length = 681
Score = 168 bits (85), Expect = 5e-040
Identities = 124/137 (90%)
Strand = Plus / Minus
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtag 659
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 681 tcccacagcgtggcgtgcagcgtcatgggcttggagctcgggtaggccaggtcggcgtag 622
Query: 660 cgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccag 719
||||||||| |||||| | | |||||| |||||||| |||||| ||||||||||||||
Sbjct: 621 cgcttgaagacgcggatcacgttgtcgtccaccttgaagaggatgttggtcgggttccag 562
Query: 720 atgatggtgtaggtgtg 736
| |||||||||||||||
Sbjct: 561 acgatggtgtaggtgtg 545
>gb|CF428603.1|CF428603 PH1_9_D02.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_9_D02_A002 3', mRNA sequence
Length = 437
Score = 168 bits (85), Expect = 5e-040
Identities = 144/163 (88%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 360 tgcgggaacctccacccatcctggcagtagttgtagcgcatgaagttgcgctccgcccac 419
|||||||||||||| || || | ||||||||||||||||||| |||||| ||| ||||||
Sbjct: 167 tgcgggaacctccagccgtcgtcgcagtagttgtagcgcatgtagttgctctcggcccac 108
Query: 420 ctgacggtgccccactcggcgctgtcaagctgcctgttcatccacccgccgctgccggcg 479
|||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 107 ttgacagtgccccactcggcgctgtcaggctgcttgttcatccacgcgccgctgccggcg 48
Query: 480 gcccggcacgcgccgccgctgacgcaggcgctggcgtagtagc 522
|| ||| ||||||||||||||||||||| |||| ||||||
Sbjct: 47 gc---gcaggcgccgccgctgacgcaggcgtcggcggagtagc 8
>gb|CD226629.1|CD226629 CCC1_47_H10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_47_H10_A007 3', mRNA sequence
Length = 665
Score = 155 bits (78), Expect = 7e-036
Identities = 105/114 (92%)
Strand = Plus / Minus
Query: 525 cggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtg 584
|||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 114 cggtaggagacgacgaagggcgcgcgggaccagtcgatgggcaccttgcccttctcggtg 55
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctc 638
|||||||||||||||||||||||||||||||||| || ||||||| ||||||||
Sbjct: 54 gcccagtagctgccgtcccacagcgtggcgtgcaccgccatgggcttggagctc 1
Score = 61.9 bits (31), Expect = 8e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
|||||| ||||||||||||| |||||| || |||||||| | |||||| |||| |||||
Sbjct: 335 atcagttgcgggcgcactcgccggggaacccctgcgggaagcgccacccgtcctcgcagt 276
Query: 388 agttgta 394
|||||||
Sbjct: 275 agttgta 269
>gb|BF422202.1|BF422202 FM1_13_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 566
Score = 143 bits (72), Expect = 3e-032
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 525 cggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtg 584
|||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 120 cggtaggagacgacgaagggcgcgcgggaccagtcgatgggcaccttgcccttctcggtg 61
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatggg 628
|||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 60 gcccagtagctgccgtcccacagcgtggcgtgcaccgccatggg 17
Score = 61.9 bits (31), Expect = 8e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
|||||| ||||||||||||| |||||| || |||||||| | |||||| |||| |||||
Sbjct: 329 atcagttgcgggcgcactcgccggggaacccctgcgggaagcgccacccgtcctcgcagt 270
Query: 388 agttgta 394
|||||||
Sbjct: 269 agttgta 263
>gb|CX616082.1|CX616082 GABR1_25_F01.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_25_F01_A002 5', mRNA sequence
Length = 643
Score = 141 bits (71), Expect = 1e-031
Identities = 107/119 (89%)
Strand = Plus / Minus
Query: 618 agcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatg 677
|||||||||||| ||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct: 643 agcgtcatgggcttggagctcgggtaggccaggtcggcgtagcgcttgaagacgcggatc 584
Query: 678 aagaggtcgtcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
| | |||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 583 acgttgtcgtccaccttgaagaggatgttggtcgggttccagatgatggtgtaggtgtg 525
>gb|CF427844.1|CF427844 PH1_11_F08.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_11_F08_A002 3', mRNA sequence
Length = 634
Score = 139 bits (70), Expect = 4e-031
Identities = 106/118 (89%)
Strand = Plus / Plus
Query: 619 gcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatga 678
||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| |
Sbjct: 1 gcgtcatgggcttggagctcgggtaggccaggtcggcgtagcgcttgaagacgcggatca 60
Query: 679 agaggtcgtcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
| |||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 61 cgttgtcgtccaccttgaagaggatgttggtcgggttccagatgatggtgtaggtgtg 118
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 239,816
Number of Sequences: 832831
Number of extensions: 239816
Number of successful extensions: 65616
Number of sequences better than 0.5: 107
Number of HSP's better than 0.5 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65301
Number of HSP's gapped (non-prelim): 222
length of query: 758
length of database: 491,359,669
effective HSP length: 20
effective length of query: 738
effective length of database: 474,703,049
effective search space: 350330850162
effective search space used: 350330850162
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)