BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.2
(767 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE361061.1|BE361061 DG1_69_D10.b1_A002 Dark Grown 1 (DG1... 785 0.0
gb|BM318762.1|BM318762 PI1_16_D08.g1_A002 Pathogen induced ... 785 0.0
gb|CD228441.1|CD228441 CCC1_7_B04.g1_A007 Callus culture/ce... 785 0.0
gb|CN141956.1|CN141956 WOUND1_2_H12.g1_A002 Wounded leaves ... 785 0.0
gb|BG933125.1|BG933125 WS1_29_E05.b1_A002 Water-stressed 1 ... 759 0.0
gb|AW680617.1|AW680617 WS1_6_D06.b1_A002 Water-stressed 1 (... 757 0.0
gb|BE592522.1|BE592522 WS1_94_B03.b1_A002 Water-stressed 1 ... 753 0.0
gb|CD228336.1|CD228336 CCC1_7_B04.b1_A007 Callus culture/ce... 751 0.0
gb|BM318682.1|BM318682 PI1_16_D08.b9_A002 Pathogen induced ... 739 0.0
gb|DN551790.1|DN551790 pSPR-RT-A-H1_A07_S096 pSPR Sorghum p... 735 0.0
gb|AW676849.1|AW676849 DG1_1_C12.b1_A002 Dark Grown 1 (DG1)... 694 0.0
gb|BE356645.1|BE356645 DG1_126_C07.g1_A002 Dark Grown 1 (DG... 676 0.0
gb|AW679594.1|AW679594 WS1_2_G10.g1_A002 Water-stressed 1 (... 670 0.0
gb|BG102410.1|BG102410 RHIZ2_23_D03.b1_A003 Rhizome2 (RHIZ2... 668 0.0
gb|BG932955.1|BG932955 DG1_69_D10.g1_A002 Dark Grown 1 (DG1... 660 0.0
gb|CX607877.1|CX607877 ANR1_31_G05.b1_A002 Anaerobic roots ... 632 e-179
gb|BG101864.1|BG101864 RHIZ2_23_D03.g1_A003 Rhizome2 (RHIZ2... 628 e-178
gb|BG933469.1|BG933469 WS1_2_G10.b1_A002 Water-stressed 1 (... 605 e-171
gb|CX607963.1|CX607963 ANR1_31_G05.g1_A002 Anaerobic roots ... 579 e-163
gb|AW679515.1|AW679515 WS1_29_E05.g1_A002 Water-stressed 1 ... 541 e-152
gb|BE592386.1|BE592386 WS1_94_B03.g1_A002 Water-stressed 1 ... 480 e-133
gb|BE352910.1|BE352910 DG1_1_C12.g1_A002 Dark Grown 1 (DG1)... 474 e-132
gb|AW680672.1|AW680672 WS1_6_D06.g1_A002 Water-stressed 1 (... 448 e-124
gb|AW745695.1|AW745695 WS1_36_F12.g1_A002 Water-stressed 1 ... 325 3e-087
gb|AW677617.1|AW677617 DG1_8_B08.g1_A002 Dark Grown 1 (DG1)... 264 1e-068
gb|CW041576.1|CW041576 104_275_10506625_115_30285 Sorghum m... 260 2e-067
gb|CW095825.1|CW095825 104_461_11001550_116_34335_093 Sorgh... 260 2e-067
gb|CW155301.1|CW155301 104_557_11146066_116_36362_035 Sorgh... 260 2e-067
gb|CW489645.1|CW489645 fsbb001f274l01k0 Sorghum methylation... 260 2e-067
gb|CW095826.1|CW095826 104_461_11001550_148_34331_093 Sorgh... 76 5e-012
gb|CW140181.1|CW140181 104_530_11135646_148_34919_021 Sorgh... 70 3e-010
gb|CW344349.1|CW344349 104_847_11487906_116_36200_079 Sorgh... 70 3e-010
gb|CW426108.1|CW426108 fsbb001f137f11k0 Sorghum methylation... 70 3e-010
gb|CW494597.1|CW494597 fsbb001f285p18f0 Sorghum methylation... 70 3e-010
gb|CW494598.1|CW494598 fsbb001f285p18k0 Sorghum methylation... 70 3e-010
gb|CN148237.1|CN148237 WOUND1_55_B10.b1_A002 Wounded leaves... 70 3e-010
gb|CN148310.1|CN148310 WOUND1_55_B10.g1_A002 Wounded leaves... 70 3e-010
gb|CW140180.1|CW140180 104_530_11135646_116_34915_021 Sorgh... 50 3e-004
gb|CW294237.1|CW294237 104_775_11415083_148_35608_046 Sorgh... 48 0.001
gb|CW344350.1|CW344350 104_847_11487906_148_36199_079 Sorgh... 48 0.001
gb|CW426107.1|CW426107 fsbb001f137f11f0 Sorghum methylation... 48 0.001
gb|CW155302.1|CW155302 104_557_11146066_148_36361_035 Sorgh... 44 0.019
gb|CD227148.1|CD227148 CCC1_4_A08.g1_A007 Callus culture/ce... 42 0.074
gb|CW417483.1|CW417483 fsbb001f120i09f0 Sorghum methylation... 40 0.29
gb|CW426129.1|CW426129 fsbb001f137f23k0 Sorghum methylation... 40 0.29
gb|CD232332.1|CD232332 SS1_39_G02.g1_A012 Salt-stressed see... 40 0.29
gb|CD234986.1|CD234986 SS1_19_G07.g1_A012 Salt-stressed see... 40 0.29
gb|CF481878.1|CF481878 POL1_74_F09.g1_A002 Pollen Sorghum b... 40 0.29
>gb|BE361061.1|BE361061 DG1_69_D10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 649
Score = 785 bits (396), Expect = 0.0
Identities = 524/564 (92%), Gaps = 2/564 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 30 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 89
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 90 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 149
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 150 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 209
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 210 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 269
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 270 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 329
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 330 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 389
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 390 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 448
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
|||||||||||||||||||||||||| | ||| |||||||| |||||||||| | ||| |
Sbjct: 449 agacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatgatta 508
Query: 554 ataccgactgtcgccgctactctcgtctcctttgtatctcctctgttggctgattaactg 613
|||| | ||| ||||||||||| |||||||||||||||||| ||||||||| || ||||
Sbjct: 509 atacttaatgttgccgctactcttgtctcctttgtatctcctttgttggctgcttcactg 568
Query: 614 ttattacaagaaattgctggactt 637
||||||||||||||||| |||||
Sbjct: 569 -tattacaagaaattgctagactt 591
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatggg 681
||||||||||||| |||||| |||||| |||||||
Sbjct: 615 cagttgttttgaaccatgtactatggtcgcatggg 649
>gb|BM318762.1|BM318762 PI1_16_D08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 636
Score = 785 bits (396), Expect = 0.0
Identities = 524/564 (92%), Gaps = 2/564 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 60
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 61 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 120
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 180
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 181 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 240
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 241 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 300
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 301 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 360
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 361 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 419
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
|||||||||||||||||||||||||| | ||| |||||||| |||||||||| | ||| |
Sbjct: 420 agacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatgatta 479
Query: 554 ataccgactgtcgccgctactctcgtctcctttgtatctcctctgttggctgattaactg 613
|||| | ||| ||||||||||| |||||||||||||||||| ||||||||| || ||||
Sbjct: 480 atacttaatgttgccgctactcttgtctcctttgtatctcctttgttggctgcttcactg 539
Query: 614 ttattacaagaaattgctggactt 637
||||||||||||||||| |||||
Sbjct: 540 -tattacaagaaattgctagactt 562
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttctt 692
||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 586 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctt 631
>gb|CD228441.1|CD228441 CCC1_7_B04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_B04_A007 5', mRNA sequence
Length = 626
Score = 785 bits (396), Expect = 0.0
Identities = 524/564 (92%), Gaps = 2/564 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 41 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 100
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 101 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 160
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 161 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 220
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 221 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 280
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 281 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 340
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 341 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 400
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 401 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 459
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
|||||||||||||||||||||||||| | ||| |||||||| |||||||||| | ||| |
Sbjct: 460 agacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatgatta 519
Query: 554 ataccgactgtcgccgctactctcgtctcctttgtatctcctctgttggctgattaactg 613
|||| | ||| ||||||||||| |||||||||||||||||| ||||||||| || ||||
Sbjct: 520 atacttaatgttgccgctactcttgtctcctttgtatctcctttgttggctgcttcactg 579
Query: 614 ttattacaagaaattgctggactt 637
||||||||||||||||| |||||
Sbjct: 580 -tattacaagaaattgctagactt 602
>gb|CN141956.1|CN141956 WOUND1_2_H12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_2_H12_A002 5', mRNA sequence
Length = 713
Score = 785 bits (396), Expect = 0.0
Identities = 524/564 (92%), Gaps = 2/564 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 49 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 108
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 109 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 168
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 169 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 228
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 229 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 288
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 289 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 348
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 349 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 408
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 409 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 467
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
|||||||||||||||||||||||||| | ||| |||||||| |||||||||| | ||| |
Sbjct: 468 agacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatgatta 527
Query: 554 ataccgactgtcgccgctactctcgtctcctttgtatctcctctgttggctgattaactg 613
|||| | ||| ||||||||||| |||||||||||||||||| ||||||||| || ||||
Sbjct: 528 atacttaatgttgccgctactcttgtctcctttgtatctcctttgttggctgcttcactg 587
Query: 614 ttattacaagaaattgctggactt 637
||||||||||||||||| |||||
Sbjct: 588 -tattacaagaaattgctagactt 610
Score = 79.8 bits (40), Expect = 3e-013
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 634 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 693
Query: 707 tgaaacagtcca 718
|||||| |||||
Sbjct: 694 tgaaacggtcca 705
>gb|BG933125.1|BG933125 WS1_29_E05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 566
Score = 759 bits (383), Expect = 0.0
Identities = 495/531 (93%), Gaps = 1/531 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 37 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 96
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 97 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 156
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 157 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 216
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 217 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 276
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 277 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 336
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 337 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 396
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 397 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 455
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
|||||||||||||||||||||||||| | ||| |||||||| |||||||||| | ||| |
Sbjct: 456 agacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatgatta 515
Query: 554 ataccgactgtcgccgctactctcgtctcctttgtatctcctctgttggct 604
|||| | ||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 516 atacttaatgttgccgctactcttgtctcctttgtatctcctttgttggct 566
>gb|AW680617.1|AW680617 WS1_6_D06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 757 bits (382), Expect = 0.0
Identities = 502/541 (92%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 25 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 84
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 85 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 144
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 145 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 204
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 205 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 264
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 265 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 324
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 325 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 384
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 443
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
|||||||||||||||||||||||||| | ||| |||||||| |||||||||| | ||| |
Sbjct: 444 agacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatgatta 503
Query: 554 ataccgactgtcgccgctactctcgtctcctttgtatctcctctgttggctgattaactg 613
|||| | ||| ||||||||||| |||| ||||||||||||| ||||||||| || ||||
Sbjct: 504 atacttaatgttgccgctactcttgtctnctttgtatctcctttgttggctgcttcactg 563
Query: 614 t 614
|
Sbjct: 564 t 564
>gb|BE592522.1|BE592522 WS1_94_B03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 583
Score = 753 bits (380), Expect = 0.0
Identities = 514/556 (92%), Gaps = 2/556 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 30 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 89
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 90 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 149
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 150 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 209
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 210 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 269
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 270 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 329
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 330 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 389
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 390 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 448
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
|||||||||||||||||||||||||| | ||| |||||||| |||||||||| | ||| |
Sbjct: 449 agacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatgatta 508
Query: 554 ataccgactgtcgccgctactctcgtctcctttgtatctcctctgttggctgattaactg 613
|||| | ||| ||||||||||| | |||||||| ||||||| || |||||| || ||||
Sbjct: 509 atacttaatgttgccgctactcttggctcctttggatctcctttggtggctgcttcactg 568
Query: 614 ttattacaagaaattg 629
|||||||||||||||
Sbjct: 569 -tattacaagaaattg 583
>gb|CD228336.1|CD228336 CCC1_7_B04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_B04_A007 3', mRNA sequence
Length = 564
Score = 751 bits (379), Expect = 0.0
Identities = 501/539 (92%), Gaps = 2/539 (0%)
Strand = Plus / Plus
Query: 99 cggcggcggcggcgaggtgatggcgatggacccggacgcggtggcgaaagccttcgtgga 158
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 cggcggcggcggcgaggtgttggcgatggacccggacgcggtggcgaaggccttcgtgga 60
Query: 159 gcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctgtatcaggagac 218
|||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 61 tcactactaccagacgttcgacaccaaccgcccggcgctggtggggctgtaccaggagac 120
Query: 219 ctccatgctcaccttcgagggccagaagttccagggcccatccgccattgccggcaagct 278
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 121 ctccatgctcaccttcgagggccataagttccagggccccgccgccattgccggcaagct 180
Query: 279 cggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccgtc 338
||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct: 181 cggatctctccccttccaggcctgccagcacaagatcgacaccgtcgactgccagccgtc 240
Query: 339 ggggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggccccgagga 398
||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 gggaccccagggaggcgtgctcgtcttcgtctccggctccatccgcaccggccccgagga 300
Query: 399 gcaccccatcaagttctcccaggcattccatttgctgccggcagctgggtccttcttcgt 458
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 301 tcaccccctcaagttctcccaggcattccatttgctgccggcagctgggtcattcttcgt 360
Query: 459 gcagaatgacatgttccgcctgaactatggctaaaagacagccgaaaactcttgtgatga 518
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 361 gcagaatgacatgttccgcctgaactatggct-gaagacagccgaaaactcttgtgatga 419
Query: 519 acgaatttgttaagggcttcatgttgagacgatgaataccgactgtcgccgctactctcg 578
| | ||| |||||||| |||||||||| | ||| ||||| | ||| ||||||||||| |
Sbjct: 420 atggattggttaagggtttcatgttgaaatgattaatacttaatgttgccgctactcttg 479
Query: 579 tctcctttgtatctcctctgttggctgattaactgttattacaagaaattgctggactt 637
||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||||
Sbjct: 480 tctcctttgtatctcctttgttggctgcttcactg-tattacaagaaattgctagactt 537
>gb|BM318682.1|BM318682 PI1_16_D08.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 551
Score = 739 bits (373), Expect = 0.0
Identities = 482/517 (93%), Gaps = 1/517 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 36 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 95
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 96 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 155
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 156 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 215
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 216 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 275
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 276 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 335
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 336 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 395
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 396 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 454
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
|||||||||||||||||||||||||| | ||| |||||||| |||||||||| | ||| |
Sbjct: 455 agacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatgatta 514
Query: 554 ataccgactgtcgccgctactctcgtctcctttgtat 590
|||| | ||| ||||||||||| |||||||||||||
Sbjct: 515 atacttaatgttgccgctactcttgtctcctttgtat 551
>gb|DN551790.1|DN551790 pSPR-RT-A-H1_A07_S096 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 781
Score = 735 bits (371), Expect = 0.0
Identities = 480/515 (93%), Gaps = 1/515 (0%)
Strand = Plus / Minus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
||||||||| |||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 726 ctcgaaaccttaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 667
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 666 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 607
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 606 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 547
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 546 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 487
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 486 tcgacaccgtcgactgccagccgtcggggccccagggaggcgtgctcgtcttcgtctccg 427
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 426 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 367
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 366 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 308
Query: 494 agacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacgatga 553
||||||||||||| |||||||||||| ||||| |||||||| |||||||||| | ||| |
Sbjct: 307 agacagccgaaaattcttgtgatgaatgaattggttaagggtttcatgttgaaatgatta 248
Query: 554 ataccgactgtcgccgctactctcgtctcctttgt 588
|||| | ||| ||||||||||| |||||||||||
Sbjct: 247 atacttaatgttgccgctactcttgtctcctttgt 213
Score = 77.8 bits (39), Expect = 1e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| || |||||||
Sbjct: 152 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgttcaatgtgaac 93
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 92 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 46
Score = 48.1 bits (24), Expect = 0.001
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 590 tctcctctgttggctgattaactgttattacaagaaattgctggactt 637
|||||| ||||||||| || ||||| |||||||||||||||| |||||
Sbjct: 222 tctcctttgttggctgcttcactgt-attacaagaaattgctagactt 176
>gb|AW676849.1|AW676849 DG1_1_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 480
Score = 694 bits (350), Expect = 0.0
Identities = 423/446 (94%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 32 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 91
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 92 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 151
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 152 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 211
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 212 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 271
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 272 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 331
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 332 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 391
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaa 493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 392 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct-ga 450
Query: 494 agacagccgaaaactcttgtgatgaa 519
||||||||||||||||||||||||||
Sbjct: 451 agacagccgaaaactcttgtgatgaa 476
>gb|BE356645.1|BE356645 DG1_126_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 676 bits (341), Expect = 0.0
Identities = 423/449 (94%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 97 accggcggcggcggcgaggtgatggcgatggacccggacgcggtggcgaaagccttcgtg 156
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 5 accggcggcggcggcgaggtgttggcgatggacccggacgcggtggcgaaggccttcgtg 64
Query: 157 gagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctgtatcaggag 216
|| |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 65 gatcactactaccagacgttcgacaccaaccgcccggcgctggtggggctgtaccaggag 124
Query: 217 acctccatgctcaccttcgagggccagaagttccagggcccatccgccattgccggcaag 276
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 125 acctccatgctcaccttcgagggccataagttccagggccccgccgccattgccggcaag 184
Query: 277 ctcggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccg 336
||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct: 185 ctcggatctctccccttccaggcctgccagcacaagatcgacaccgtcgactgccagccg 244
Query: 337 tcggggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggccccgag 396
||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 245 tcgggaccccagggaggcgtgctcgtcttcgtctccggctccatccgcaccggccccgag 304
Query: 397 gagcaccccatcaagttctcccaggcattccatttgctgccggcagctgggtccttcttc 456
|| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 305 gatcaccccctcaagttctcccaggcattccatttgctgccggcagatgggtcattcttc 364
Query: 457 gtgcagaatgacatgttccgcctgaactatggctaaaagacagccgaaaactcttgtgat 516
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 365 gtgcagaatgacatgttccgcctgaactatggct-gaagacagccgaaaactcttgtgat 423
Query: 517 gaacgaatttgttaagggcttcatgttga 545
||| | ||| |||||||| ||||||||||
Sbjct: 424 gaatggattggttaagggtttcatgttga 452
>gb|AW679594.1|AW679594 WS1_2_G10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 670 bits (338), Expect = 0.0
Identities = 454/490 (92%), Gaps = 2/490 (0%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 3 gccttcgtggatcactactaccagacgttcgacaccaaccgcccggcgctggtggggctg 62
Query: 208 tatcaggagacctccatgctcaccttcgagggccagaagttccagggcccatccgccatt 267
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 63 taccaggagacctccatgctcaccttcgagggccataagttccagggccccgccgccatt 122
Query: 268 gccggcaagctcggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgac 327
|||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||
Sbjct: 123 gccggcaagctcggatctctccccttccaggcctgccagcacaagatcgacaccgtcgac 182
Query: 328 tgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttccatccgcacc 387
|||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 183 tgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccggctccatccgcacc 242
Query: 388 ggccccgaggagcaccccatcaagttctcccaggcattccatttgctgccggcagctggg 447
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggccccgaggatcaccccctcaagttctcccaggcattccatttgctgccggcagctggg 302
Query: 448 tccttcttcgtgcagaatgacatgttccgcctgaactatggctaaaagacagccgaaaac 507
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 303 tcattcttcgtgcagaatgacatgttccgcctgaactatggct-gaagacagccgaaaac 361
Query: 508 tcttgtgatgaacgaatttgttaagggcttcatgttgagacgatgaataccgactgtcgc 567
|||||||||||| | ||| |||||||| |||||||||| | ||| ||||| | ||| ||
Sbjct: 362 tcttgtgatgaatggattggttaagggtttcatgttgaaatgattaatacttaatgttgc 421
Query: 568 cgctactctcgtctcctttgtatctcctctgttggctgattaactgttattacaagaaat 627
||||||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||
Sbjct: 422 cgctactcttgtctcctttgtatctcctttgttggctgcttcactg-tattacaagaaat 480
Query: 628 tgctggactt 637
|||| |||||
Sbjct: 481 tgctagactt 490
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttctt 692
||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 514 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctt 559
>gb|BG102410.1|BG102410 RHIZ2_23_D03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 445
Score = 668 bits (337), Expect = 0.0
Identities = 397/417 (95%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 29 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 88
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 89 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 148
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 149 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 208
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 209 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 268
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 269 tcgacaccgtcgactgccagccgtcggggccccagggaggcgtgctcgtcttcgtctccg 328
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 329 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 388
Query: 434 tgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggct 490
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggct 445
>gb|BG932955.1|BG932955 DG1_69_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 660 bits (333), Expect = 0.0
Identities = 449/485 (92%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 153 cgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctgtatca 212
|||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1 cgtggatcactactaccagacgttcgacaccaaccgcccggcgctggtggggctgtacca 60
Query: 213 ggagacctccatgctcaccttcgagggccagaagttccagggcccatccgccattgccgg 272
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 61 ggagacctccatgctcaccttcgagggccataagttccagggccccgccgccattgccgg 120
Query: 273 caagctcggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgcca 332
||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct: 121 caagctcggatctctccccttccaggcctgccagcacaagatcgacaccgtcgactgcca 180
Query: 333 gccgtcggggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggccc 392
||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 181 gccgtcgggaccccagggaggcgtgctcgtcttcgtctccggctccatccgcaccggccc 240
Query: 393 cgaggagcaccccatcaagttctcccaggcattccatttgctgccggcagctgggtcctt 452
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 cgaggatcaccccctcaagttctcccaggcattccatttgctgccggcagctgggtcatt 300
Query: 453 cttcgtgcagaatgacatgttccgcctgaactatggctaaaagacagccgaaaactcttg 512
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 cttcgtgcagaatgacatgttccgcctgaactatggct-gaagacagccgaaaactcttg 359
Query: 513 tgatgaacgaatttgttaagggcttcatgttgagacgatgaataccgactgtcgccgcta 572
||||||| | ||| |||||||| |||||||||| | ||| ||||| | ||| |||||||
Sbjct: 360 tgatgaatggattggttaagggtttcatgttgaaatgattaatacttaatgttgccgcta 419
Query: 573 ctctcgtctcctttgtatctcctctgttggctgattaactgttattacaagaaattgctg 632
|||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||||
Sbjct: 420 ctcttgtctcctttgtatctcctttgttggctgcttcactg-tattacaagaaattgcta 478
Query: 633 gactt 637
|||||
Sbjct: 479 gactt 483
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 507 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 566
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 567 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 613
>gb|CX607877.1|CX607877 ANR1_31_G05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_31_G05_A002 3', mRNA sequence
Length = 642
Score = 632 bits (319), Expect = e-179
Identities = 432/467 (92%), Gaps = 2/467 (0%)
Strand = Plus / Plus
Query: 171 gacgttcgacaccaaccgcgcggcgctggtggggctgtatcaggagacctccatgctcac 230
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5 gacgtttgacaccaaccgcccggcgctggtggggctgtaccaggagacctccatgctcac 64
Query: 231 cttcgagggccagaagttccagggcccatccgccattgccggcaagctcggatctcttcc 290
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 65 cttcgagggccataagttccagggccccgccgccattgccggcaagctcggatctctccc 124
Query: 291 cttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccgtcggggccccaggg 350
||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 125 cttccaggcctgccagcacaagatcgacaccgtcgactgccagccgtcgggaccccaggg 184
Query: 351 aggcatgctcgtcttcgtctccggttccatccgcaccggccccgaggagcaccccatcaa 410
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 185 aggcgtgctcgtcttcgtctccggctccatccgcaccggccccgaggatcaccccctcaa 244
Query: 411 gttctcccaggcattccatttgctgccggcagctgggtccttcttcgtgcagaatgacat 470
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 245 gttctcccaggcattccatttgctgccggcagctgggtcattcttcgtgcagaatgacat 304
Query: 471 gttccgcctgaactatggctaaaagacagccgaaaactcttgtgatgaacgaatttgtta 530
|||||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||
Sbjct: 305 gttccgcctgaactatggct-gaagacagccgaaaactcttgtgatgaatggattggtta 363
Query: 531 agggcttcatgttgagacgatgaataccgactgtcgccgctactctcgtctcctttgtat 590
|||| |||||||||| | ||| ||||| | ||| ||||||||||| |||||||||||||
Sbjct: 364 agggtttcatgttgaaatgattaatacttaatgttgccgctactcttgtctcctttgtat 423
Query: 591 ctcctctgttggctgattaactgttattacaagaaattgctggactt 637
||||| ||||||||| || |||| ||||||||||||||||| |||||
Sbjct: 424 ctcctttgttggctgcttcactg-tattacaagaaattgctagactt 469
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 493 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 552
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 553 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 599
>gb|BG101864.1|BG101864 RHIZ2_23_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 507
Score = 628 bits (317), Expect = e-178
Identities = 411/441 (93%), Gaps = 1/441 (0%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 3 gccttcgtggatcactactaccagacgttcgacaccaaccgcccggcgctggtggggctg 62
Query: 208 tatcaggagacctccatgctcaccttcgagggccagaagttccagggcccatccgccatt 267
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 63 taccaggagacctccatgctcaccttcgagggccataagttccagggccccgccgccatt 122
Query: 268 gccggcaagctcggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgac 327
|||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||
Sbjct: 123 gccggcaagctcggatctctccccttccaggcctgccagcacaagatcgacaccgtcgac 182
Query: 328 tgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttccatccgcacc 387
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 183 tgccagccgtcggggccccagggaggcgtgctcgtcttcgtctccggctccatccgcacc 242
Query: 388 ggccccgaggagcaccccatcaagttctcccaggcattccatttgctgccggcagctggg 447
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggccccgaggatcaccccctcaagttctcccaggcattccatttgctgccggcagctggg 302
Query: 448 tccttcttcgtgcagaatgacatgttccgcctgaactatggctaaaagacagccgaaaac 507
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 303 tcattcttcgtgcagaatgacatgttccgcctgaactatggct-gaagacagccgaaaat 361
Query: 508 tcttgtgatgaacgaatttgttaagggcttcatgttgagacgatgaataccgactgtcgc 567
|||||||||||| ||||| |||||||| |||||||||| | ||| ||||| | ||| ||
Sbjct: 362 tcttgtgatgaatgaattggttaagggtttcatgttgaaatgattaatacttaatgttgc 421
Query: 568 cgctactctcgtctcctttgt 588
||||||||| |||||||||||
Sbjct: 422 cgctactcttgtctcctttgt 442
Score = 48.1 bits (24), Expect = 0.001
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 590 tctcctctgttggctgattaactgttattacaagaaattgctggactt 637
|||||| ||||||||| || ||||| |||||||||||||||| |||||
Sbjct: 433 tctcctttgttggctgcttcactgt-attacaagaaattgctagactt 479
>gb|BG933469.1|BG933469 WS1_2_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 418
Score = 605 bits (305), Expect = e-171
Identities = 368/389 (94%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 30 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 89
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 90 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 149
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 150 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 209
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 210 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 269
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 270 tcgacaccgtcgactgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccg 329
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 330 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 389
Query: 434 tgccggcagctgggtccttcttcgtgcag 462
|||||||||||||||| ||||||||||||
Sbjct: 390 tgccggcagctgggtcattcttcgtgcag 418
>gb|CX607963.1|CX607963 ANR1_31_G05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_31_G05_A002 5', mRNA sequence
Length = 411
Score = 579 bits (292), Expect = e-163
Identities = 355/376 (94%)
Strand = Plus / Plus
Query: 74 ctcgaaaccctaggtgcgtgccgaccggcggcggcggcgaggtgatggcgatggacccgg 133
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 32 ctcgaaaccctaggagcgtgcggaccggcggcggcggcgaggtgttggcgatggacccgg 91
Query: 134 acgcggtggcgaaagccttcgtggagcactactaccggacgttcgacaccaaccgcgcgg 193
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 92 acgcggtggcgaaggccttcgtggatcactactaccagacgttcgacaccaaccgcccgg 151
Query: 194 cgctggtggggctgtatcaggagacctccatgctcaccttcgagggccagaagttccagg 253
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 152 cgctggtggggctgtaccaggagacctccatgctcaccttcgagggccataagttccagg 211
Query: 254 gcccatccgccattgccggcaagctcggatctcttcccttccaggcctgcgagcaccaga 313
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 212 gccccgccgccattgccggcaagctcggatctctccccttccaggcctgccagcacaaga 271
Query: 314 tcgtcaccgtcgactgccagccgtcggggccccagggaggcatgctcgtcttcgtctccg 373
||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct: 272 tcgacaccgtcgactgccagccgtcgggaccccatggaggcgtgctcgtcttcgtctccg 331
Query: 374 gttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccatttgc 433
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 332 gctccatccgcaccggccccgaggatcaccccctcaagttctcccaggcattccatttgc 391
Query: 434 tgccggcagctgggtc 449
||||||||||||||||
Sbjct: 392 tgccggcagctgggtc 407
>gb|AW679515.1|AW679515 WS1_29_E05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 481
Score = 541 bits (273), Expect = e-152
Identities = 377/409 (92%), Gaps = 2/409 (0%)
Strand = Plus / Plus
Query: 229 accttcgagggccagaagttccagggcccatccgccattgccggcaagctcggatctctt 288
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 accttcgagggccataagttccagggccccgccgccattgccggcaagctcggatctctc 60
Query: 289 cccttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccgtcggggccccag 348
||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct: 61 cccttccaggcctgccagcacaagatcgacaccgtcgactgccagccgtcgggaccccag 120
Query: 349 ggaggcatgctcgtcttcgtctccggttccatccgcaccggccccgaggagcaccccatc 408
|||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 121 ggaggcgtgctcgtcttcgtctccggctccatccgcaccggccccgaggatcaccccctc 180
Query: 409 aagttctcccaggcattccatttgctgccggcagctgggtccttcttcgtgcagaatgac 468
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 181 aagttctcccaggcattccatttgctgccggcagctgggtcattcttcgtgcagaatgac 240
Query: 469 atgttccgcctgaactatggctaaaagacagccgaaaactcttgtgatgaacgaatttgt 528
|||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||
Sbjct: 241 atgttccgcctgaactatggct-gaagacagccgaaaactcttgtgatgaatggattggt 299
Query: 529 taagggcttcatgttgagacgatgaataccgactgtcgccgctactctcgtctcctttgt 588
|||||| |||||||||| | ||| ||||| | ||| ||||||||||| |||||||||||
Sbjct: 300 taagggtttcatgttgaaatgattaatacttaatgttgccgctactcttgtctcctttgt 359
Query: 589 atctcctctgttggctgattaactgttattacaagaaattgctggactt 637
||||||| ||||||||| || |||| ||||||||||||||||| |||||
Sbjct: 360 atctcctttgttggctgcttcactg-tattacaagaaattgctagactt 407
Score = 61.9 bits (31), Expect = 8e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccattt 689
||||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 431 cagttgttttgaaccatgtactatggtcgcatgggcaccattt 473
>gb|BE592386.1|BE592386 WS1_94_B03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 440
Score = 480 bits (242), Expect = e-133
Identities = 337/366 (92%), Gaps = 2/366 (0%)
Strand = Plus / Plus
Query: 272 gcaagctcggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcgactgcc 331
|||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 1 gcaagctcggatctctccccttccaggcctgccagcacaagatcgacaccgtcgactgcc 60
Query: 332 agccgtcggggccccagggaggcatgctcgtcttcgtctccggttccatccgcaccggcc 391
|||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 61 agccgtcgggaccccagggaggcgtgctcgtcttcgtctccggctccatccgcaccggcc 120
Query: 392 ccgaggagcaccccatcaagttctcccaggcattccatttgctgccggcagctgggtcct 451
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 121 ccgaggatcaccccctcaagttctcccaggcattccatttgctgccggcagctgggtcat 180
Query: 452 tcttcgtgcagaatgacatgttccgcctgaactatggctaaaagacagccgaaaactctt 511
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 181 tcttcgtgcagaatgacatgttccgcctgaactatggct-gaagacagccgaaaactctt 239
Query: 512 gtgatgaacgaatttgttaagggcttcatgttgagacgatgaataccgactgtcgccgct 571
|||||||| | ||| |||||||| |||||||||| | ||| ||||| | ||| ||||||
Sbjct: 240 gtgatgaatggattggttaagggtttcatgttgaaatgattaatacttaatgttgccgct 299
Query: 572 actctcgtctcctttgtatctcctctgttggctgattaactgttattacaagaaattgct 631
||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||||
Sbjct: 300 actcttgtctcctttgtatctcctttgttggctgcttcactg-tattacaagaaattgct 358
Query: 632 ggactt 637
|||||
Sbjct: 359 agactt 364
Score = 46.1 bits (23), Expect = 0.005
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatc-atgtattatggttgcatgggcaccatt 688
||||||||||||| | ||||| |||||| ||||||||||||||
Sbjct: 388 cagttgttttgaacccatgtactatggtcgcatgggcaccatt 430
>gb|BE352910.1|BE352910 DG1_1_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 474 bits (239), Expect = e-132
Identities = 340/371 (91%), Gaps = 2/371 (0%)
Strand = Plus / Plus
Query: 267 tgccggcaagctcggatctcttcccttccaggcctgcgagcaccagatcgtcaccgtcga 326
||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||
Sbjct: 1 tgccggcaagctcggatctctccccttccaggcctgccagcacaagatcgacaccgtcga 60
Query: 327 ctgccagccgtcggggccccagggaggcatgctcgtcttcgtctccggttccatccgcac 386
||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 61 ctgccagccgtcgggaccccagggaggcgtgctcgtcttcgtctccggctccatccgcac 120
Query: 387 cggccccgaggagcaccccatcaagttctcccaggcattccatttgctgccggcagctgg 446
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cggccccgaggatcaccccctcaagttctcccaggcattccatttgctgccggcagctgg 180
Query: 447 gtccttcttcgtgcagaatgacatgttccgcctgaactatggctaaaagacagccgaaaa 506
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 181 gtcattcttcgtgcagaatgacatgttccgcctgaactatggct-gaagacagccgaaaa 239
Query: 507 ctcttgtgatgaacgaatttgttaagggcttcatgttgagacgatgaataccgactgtcg 566
||||||||||||| | ||| |||||||| |||||||||| | ||| ||||| | ||| |
Sbjct: 240 ctcttgtgatgaatggattggttaagggtttcatgttgaaatgattaatacttaatgttg 299
Query: 567 ccgctactctcgtctcctttgtatctcctctgttggctgattaactgttattacaagaaa 626
|||||||||| |||||||||||||||||| | |||||| || |||| ||||||||||||
Sbjct: 300 ccgctactcttgtctcctttgtatctccttagatggctgcttcactg-tattacaagaaa 358
Query: 627 ttgctggactt 637
||||| |||||
Sbjct: 359 ttgctagactt 369
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 393 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 452
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 453 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 499
>gb|AW680672.1|AW680672 WS1_6_D06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 478
Score = 448 bits (226), Expect = e-124
Identities = 318/346 (91%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 292 ttccaggcctgcgagcaccagatcgtcaccgtcgactgccagccgtcggggccccaggga 351
|||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct: 1 ttccaggcctgccagcacaagatcgacaccgtcgactgccagccgtcgggaccccaggga 60
Query: 352 ggcatgctcgtcttcgtctccggttccatccgcaccggccccgaggagcaccccatcaag 411
||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct: 61 ggcgtgctcgtcttcgtctccggctccatccgcaccggccccgaggatcaccccctcaag 120
Query: 412 ttctcccaggcattccatttgctgccggcagctgggtccttcttcgtgcagaatgacatg 471
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 ttctcccaggcattccatttgctgccggcagctgggtcattcttcgtgcagaatgacatg 180
Query: 472 ttccgcctgaactatggctaaaagacagccgaaaactcttgtgatgaacgaatttgttaa 531
||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||
Sbjct: 181 ttccgcctgaactatggct-gaagacagccgaaaactcttgtgatgaatggattggttaa 239
Query: 532 gggcttcatgttgagacgatgaataccgactgtcgccgctactctcgtctcctttgtatc 591
||| |||||||||| | ||| ||||| | ||| ||||||||||| ||||||||||||||
Sbjct: 240 gggtttcatgttgaaatgattaatacttaatgttgccgctactcttgtctcctttgtatc 299
Query: 592 tcctctgttggctgattaactgttattacaagaaattgctggactt 637
|||| ||||||||| || |||| ||||||||||||||||| |||||
Sbjct: 300 tcctttgttggctgcttcactg-tattacaagaaattgctagactt 344
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 368 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 427
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 428 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 474
>gb|AW745695.1|AW745695 WS1_36_F12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 378
Score = 325 bits (164), Expect = 3e-087
Identities = 244/268 (91%), Gaps = 2/268 (0%)
Strand = Plus / Plus
Query: 370 tccggttccatccgcaccggccccgaggagcaccccatcaagttctcccaggcattccat 429
||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 3 tccggctccatccgcaccggccccgaggatcaccccctcaagttgtcccaggcattccat 62
Query: 430 ttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcctgaactatggc 489
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ttgctgccggcagctgggtcattcttcgtgcagaatgacatgttccgcctgaactatggc 122
Query: 490 taaaagacagccgaaaactcttgtgatgaacgaatttgttaagggcttcatgttgagacg 549
| ||||||||||||||||||||||||||| | ||| |||||||| |||||||||| | |
Sbjct: 123 t-gaagacagccgaaaactcttgtgatgaatggattggttaagggtttcatgttgaaatg 181
Query: 550 atgaataccgactgtcgccgctactctcgtctcctttgtatctcctctgttggctgatta 609
|| ||||| | ||| ||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct: 182 attaatacttaatgttgccgctactcttgtctcctttgtatctcctttgttggctgcttc 241
Query: 610 actgttattacaagaaattgctggactt 637
|||| ||||||||||||||||| |||||
Sbjct: 242 actg-tattacaagaaattgctagactt 268
Score = 79.8 bits (40), Expect = 3e-013
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 292 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 351
Query: 707 tgaaacagtcca 718
|||||| |||||
Sbjct: 352 tgaaacggtcca 363
>gb|AW677617.1|AW677617 DG1_8_B08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 264 bits (133), Expect = 1e-068
Identities = 201/221 (90%), Gaps = 2/221 (0%)
Strand = Plus / Plus
Query: 417 ccaggcattccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccg 476
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 70 ccaggcattccatttgctgccggcagctgggtcattcttcgtgcagaatgacatgttccg 129
Query: 477 cctgaactatggctaaaagacagccgaaaactcttgtgatgaacgaatttgttaagggct 536
|||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||| |
Sbjct: 130 cctgaactatggct-gaagacagccgaaaactcttgtgatgaatggattggttaagggtt 188
Query: 537 tcatgttgagacgatgaataccgactgtcgccgctactctcgtctcctttgtatctcctc 596
||||||||| | ||| ||||| | ||| ||||||||||| ||||||||||||||||||
Sbjct: 189 tcatgttgaaatgattaatacttaatgttgccgctactcttgtctcctttgtatctcctt 248
Query: 597 tgttggctgattaactgttattacaagaaattgctggactt 637
||||||||| || |||| ||||||||||||||||| |||||
Sbjct: 249 tgttggctgcttcactg-tattacaagaaattgctagactt 288
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 312 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 371
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 372 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 418
>gb|CW041576.1|CW041576 104_275_10506625_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506625, DNA
sequence
Length = 636
Score = 260 bits (131), Expect = 2e-067
Identities = 199/219 (90%), Gaps = 2/219 (0%)
Strand = Plus / Plus
Query: 419 aggcattccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcc 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 171 aggcattccatttgctgccggcagctgggtcattcttcgtgcagaatgacatgttccgcc 230
Query: 479 tgaactatggctaaaagacagccgaaaactcttgtgatgaacgaatttgttaagggcttc 538
|||||||||||| ||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct: 231 tgaactatggct-gaagacagccgaaaactcttgtgatgaatggattggttaagggtttc 289
Query: 539 atgttgagacgatgaataccgactgtcgccgctactctcgtctcctttgtatctcctctg 598
||||||| | ||| ||||| | ||| ||||||||||| |||||||||||||||||| ||
Sbjct: 290 atgttgaaatgattaatacttaatgttgccgctactcttgtctcctttgtatctcctttg 349
Query: 599 ttggctgattaactgttattacaagaaattgctggactt 637
||||||| || |||| ||||||||||||||||| |||||
Sbjct: 350 ttggctgcttcactg-tattacaagaaattgctagactt 387
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 411 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 470
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 471 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 517
>gb|CW095825.1|CW095825 104_461_11001550_116_34335_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001550, DNA
sequence
Length = 731
Score = 260 bits (131), Expect = 2e-067
Identities = 199/219 (90%), Gaps = 2/219 (0%)
Strand = Plus / Minus
Query: 419 aggcattccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcc 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 532 aggcattccatttgctgccggcagctgggtcattcttcgtgcagaatgacatgttccgcc 473
Query: 479 tgaactatggctaaaagacagccgaaaactcttgtgatgaacgaatttgttaagggcttc 538
|||||||||||| ||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct: 472 tgaactatggct-gaagacagccgaaaactcttgtgatgaatggattggttaagggtttc 414
Query: 539 atgttgagacgatgaataccgactgtcgccgctactctcgtctcctttgtatctcctctg 598
||||||| | ||| ||||| | ||| ||||||||||| |||||||||||||||||| ||
Sbjct: 413 atgttgaaatgattaatacttaatgttgccgctactcttgtctcctttgtatctcctttg 354
Query: 599 ttggctgattaactgttattacaagaaattgctggactt 637
||||||| || |||| ||||||||||||||||| |||||
Sbjct: 353 ttggctgcttcactg-tattacaagaaattgctagactt 316
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 292 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 233
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 232 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 186
>gb|CW155301.1|CW155301 104_557_11146066_116_36362_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146066, DNA
sequence
Length = 671
Score = 260 bits (131), Expect = 2e-067
Identities = 199/219 (90%), Gaps = 2/219 (0%)
Strand = Plus / Plus
Query: 419 aggcattccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcc 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 275 aggcattccatttgctgccggcagctgggtcattcttcgtgcagaatgacatgttccgcc 334
Query: 479 tgaactatggctaaaagacagccgaaaactcttgtgatgaacgaatttgttaagggcttc 538
|||||||||||| ||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct: 335 tgaactatggct-gaagacagccgaaaactcttgtgatgaatggattggttaagggtttc 393
Query: 539 atgttgagacgatgaataccgactgtcgccgctactctcgtctcctttgtatctcctctg 598
||||||| | ||| ||||| | ||| ||||||||||| |||||||||||||||||| ||
Sbjct: 394 atgttgaaatgattaatacttaatgttgccgctactcttgtctcctttgtatctcctttg 453
Query: 599 ttggctgattaactgttattacaagaaattgctggactt 637
||||||| || |||| ||||||||||||||||| |||||
Sbjct: 454 ttggctgcttcactg-tattacaagaaattgctagactt 491
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 515 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 574
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 575 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 621
>gb|CW489645.1|CW489645 fsbb001f274l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274l01, DNA
sequence
Length = 655
Score = 260 bits (131), Expect = 2e-067
Identities = 199/219 (90%), Gaps = 2/219 (0%)
Strand = Plus / Plus
Query: 419 aggcattccatttgctgccggcagctgggtccttcttcgtgcagaatgacatgttccgcc 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 173 aggcattccatttgctgccggcagctgggtcattcttcgtgcagaatgacatgttccgcc 232
Query: 479 tgaactatggctaaaagacagccgaaaactcttgtgatgaacgaatttgttaagggcttc 538
|||||||||||| ||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct: 233 tgaactatggct-gaagacagccgaaaactcttgtgatgaatggattggttaagggtttc 291
Query: 539 atgttgagacgatgaataccgactgtcgccgctactctcgtctcctttgtatctcctctg 598
||||||| | ||| ||||| | ||| ||||||||||| |||||||||||||||||| ||
Sbjct: 292 atgttgaaatgattaatacttaatgttgccgctactcttgtctcctttgtatctcctttg 351
Query: 599 ttggctgattaactgttattacaagaaattgctggactt 637
||||||| || |||| ||||||||||||||||| |||||
Sbjct: 352 ttggctgcttcactg-tattacaagaaattgctagactt 389
Score = 85.7 bits (43), Expect = 6e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 647 cagttgttttgaatcatgtattatggttgcatgggcaccatttcttcgtgggatgtgaat 706
||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||||
Sbjct: 413 cagttgttttgaaccatgtactatggtcgcatgggcaccatttctttgtgcaatgtgaac 472
Query: 707 tgaaacagtccaaatcaattggtgtggcagatatctggtttgccctt 753
|||||| ||||| || ||||||| ||||||||||||||||||
Sbjct: 473 tgaaacggtccagatttgctggtgtgaaggatatctggtttgccctt 519
>gb|CW095826.1|CW095826 104_461_11001550_148_34331_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001550, DNA
sequence
Length = 558
Score = 75.8 bits (38), Expect = 5e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 419 aggcattccatttgctgccggcagctgggtccttcttcgtgc 460
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 517 aggcattccatttgctgccggcagctgggtcattcttcgtgc 558
>gb|CW140181.1|CW140181 104_530_11135646_148_34919_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135646, DNA
sequence
Length = 631
Score = 69.9 bits (35), Expect = 3e-010
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| ||||||||||| ||||||||| || ||||||| ||||||| | |||
Sbjct: 192 gccttcgtggaacactactaccgcacgttcgacgccgaccgcgccgcgctggccgcgctc 251
Query: 208 tatcaggagacctccatgctcaccttcgagggcca 242
|| |||||||||||||| |||||||||||||
Sbjct: 252 tacggccagacctccatgctctccttcgagggcca 286
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 450 cttcttcgtgcagaatgacatgttccgcctgaacta 485
||||||||||||||||||||| ||||| || |||||
Sbjct: 596 cttcttcgtgcagaatgacatattccggctcaacta 631
>gb|CW344349.1|CW344349 104_847_11487906_116_36200_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487906, DNA
sequence
Length = 350
Score = 69.9 bits (35), Expect = 3e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| ||||||||||| ||||||||| || ||||||| ||||||| | |||
Sbjct: 318 gccttcgtggaacactactaccgcacgttcgacgccgaccgcgccgcgctggccgcgctc 259
Query: 208 tatcaggagacctccatgctcaccttcgagggcca 242
|| |||||||||||||| |||||||||||||
Sbjct: 258 tacggccagacctccatgctctccttcgagggcca 224
>gb|CW426108.1|CW426108 fsbb001f137f11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137f11, DNA
sequence
Length = 727
Score = 69.9 bits (35), Expect = 3e-010
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| ||||||||||| ||||||||| || ||||||| ||||||| | |||
Sbjct: 379 gccttcgtggaacactactaccgcacgttcgacgccgaccgcgccgcgctggccgcgctc 438
Query: 208 tatcaggagacctccatgctcaccttcgagggcca 242
|| |||||||||||||| |||||||||||||
Sbjct: 439 tacggccagacctccatgctctccttcgagggcca 473
>gb|CW494597.1|CW494597 fsbb001f285p18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285p18, DNA
sequence
Length = 598
Score = 69.9 bits (35), Expect = 3e-010
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| ||||||||||| ||||||||| || ||||||| ||||||| | |||
Sbjct: 331 gccttcgtggaacactactaccgcacgttcgacgccgaccgcgccgcgctggccgcgctc 390
Query: 208 tatcaggagacctccatgctcaccttcgagggcca 242
|| |||||||||||||| |||||||||||||
Sbjct: 391 tacggccagacctccatgctctccttcgagggcca 425
>gb|CW494598.1|CW494598 fsbb001f285p18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285p18, DNA
sequence
Length = 683
Score = 69.9 bits (35), Expect = 3e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| ||||||||||| ||||||||| || ||||||| ||||||| | |||
Sbjct: 630 gccttcgtggaacactactaccgcacgttcgacgccgaccgcgccgcgctggccgcgctc 571
Query: 208 tatcaggagacctccatgctcaccttcgagggcca 242
|| |||||||||||||| |||||||||||||
Sbjct: 570 tacggccagacctccatgctctccttcgagggcca 536
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 450 cttcttcgtgcagaatgacatgttccgcctgaactatggct 490
||||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 226 cttcttcgtgcagaatgacatattccggctcaactacggct 186
>gb|CN148237.1|CN148237 WOUND1_55_B10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_B10_A002 3', mRNA sequence
Length = 735
Score = 69.9 bits (35), Expect = 3e-010
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| ||||||||||| ||||||||| || ||||||| ||||||| | |||
Sbjct: 151 gccttcgtggaacactactaccgcacgttcgacgccgaccgcgccgcgctggccgcgctc 210
Query: 208 tatcaggagacctccatgctcaccttcgagggcca 242
|| |||||||||||||| |||||||||||||
Sbjct: 211 tacggccagacctccatgctctccttcgagggcca 245
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 450 cttcttcgtgcagaatgacatgttccgcctgaactatggct 490
||||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 459 cttcttcgtgcagaatgacatattccggctcaactacggct 499
>gb|CN148310.1|CN148310 WOUND1_55_B10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_B10_A002 5', mRNA sequence
Length = 782
Score = 69.9 bits (35), Expect = 3e-010
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgcggcgctggtggggctg 207
||||||||||| ||||||||||| ||||||||| || ||||||| ||||||| | |||
Sbjct: 193 gccttcgtggaacactactaccgcacgttcgacgccgaccgcgccgcgctggccgcgctc 252
Query: 208 tatcaggagacctccatgctcaccttcgagggcca 242
|| |||||||||||||| |||||||||||||
Sbjct: 253 tacggccagacctccatgctctccttcgagggcca 287
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 450 cttcttcgtgcagaatgacatgttccgcctgaactatggct 490
||||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 501 cttcttcgtgcagaatgacatattccggctcaactacggct 541
>gb|CW140180.1|CW140180 104_530_11135646_116_34915_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135646, DNA
sequence
Length = 686
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 450 cttcttcgtgcagaatgacatgttccgcctgaactatggct 490
||||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 526 cttcttcgtgcagaatgacatattccggctcaactacggct 486
>gb|CW294237.1|CW294237 104_775_11415083_148_35608_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415083, DNA
sequence
Length = 647
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 512 gtgatgaacgaatttgttaagggc 535
||||||||||||||||||||||||
Sbjct: 179 gtgatgaacgaatttgttaagggc 202
>gb|CW344350.1|CW344350 104_847_11487906_148_36199_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487906, DNA
sequence
Length = 595
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 148 gccttcgtggagcactactaccggacgttcgacaccaaccgcgc 191
|||||| |||| ||||||||||| ||||||||| || |||||||
Sbjct: 549 gccttcatggaacactactaccgtacgttcgacgccgaccgcgc 592
>gb|CW426107.1|CW426107 fsbb001f137f11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137f11, DNA
sequence
Length = 726
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 215 agacctccatgctcaccttcgagggcca 242
|||||||||||||| |||||||||||||
Sbjct: 704 agacctccatgctctccttcgagggcca 677
>gb|CW155302.1|CW155302 104_557_11146066_148_36361_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146066, DNA
sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 675 gcatgggcaccatttcttcgtgggatgtgaattgaaac 712
|||||||||||||||||| ||| ||||||| ||||||
Sbjct: 697 gcatgggcaccatttctttgtgcaatgtgaactgaaac 660
>gb|CD227148.1|CD227148 CCC1_4_A08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_A08_A007 5', mRNA sequence
Length = 193
Score = 42.1 bits (21), Expect = 0.074
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 cggcggcggcggcgaggtgat 119
|||||||||||||||||||||
Sbjct: 97 cggcggcggcggcgaggtgat 117
>gb|CW417483.1|CW417483 fsbb001f120i09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f120i09, DNA
sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 ccggcggcggcggcgaggtg 117
||||||||||||||||||||
Sbjct: 243 ccggcggcggcggcgaggtg 262
>gb|CW426129.1|CW426129 fsbb001f137f23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137f23, DNA
sequence
Length = 473
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 98 ccggcggcggcggcgaggtg 117
||||||||||||||||||||
Sbjct: 459 ccggcggcggcggcgaggtg 440
>gb|CD232332.1|CD232332 SS1_39_G02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_39_G02_A012 5', mRNA sequence
Length = 195
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 98 ccggcggcggcggcgaggtg 117
||||||||||||||||||||
Sbjct: 76 ccggcggcggcggcgaggtg 57
>gb|CD234986.1|CD234986 SS1_19_G07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_19_G07_A012 5', mRNA sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 98 ccggcggcggcggcgaggtg 117
||||||||||||||||||||
Sbjct: 211 ccggcggcggcggcgaggtg 192
>gb|CF481878.1|CF481878 POL1_74_F09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_74_F09_A002 5', mRNA sequence
Length = 136
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 98 ccggcggcggcggcgaggtg 117
||||||||||||||||||||
Sbjct: 79 ccggcggcggcggcgaggtg 60
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 328,647
Number of Sequences: 832831
Number of extensions: 328647
Number of successful extensions: 138051
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137876
Number of HSP's gapped (non-prelim): 119
length of query: 767
length of database: 491,359,669
effective HSP length: 20
effective length of query: 747
effective length of database: 474,703,049
effective search space: 354603177603
effective search space used: 354603177603
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)