BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441276.2.1
(1796 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG158302.1|BG158302 EM1_11_G01.b1_A002 Embryo 1 (EM1) So... 478 e-133
gb|CW191468.1|CW191468 104_613_11178510_148_36941_023 Sorgh... 402 e-110
gb|BI097863.1|BI097863 IP1_29_A01.g1_A002 Immature pannicle... 351 1e-094
gb|CF758034.1|CF758034 DSAF1_26_E01.g1_A011 Drought-stresse... 351 1e-094
gb|BG101898.1|BG101898 RHIZ2_21_C02.g1_A003 Rhizome2 (RHIZ2... 321 1e-085
gb|BG158203.1|BG158203 EM1_11_G01.g1_A002 Embryo 1 (EM1) So... 315 8e-084
gb|CW466336.1|CW466336 fsbb001f217i16f0 Sorghum methylation... 307 2e-081
gb|BG102131.1|BG102131 RHIZ2_21_C02.b1_A003 Rhizome2 (RHIZ2... 268 2e-069
gb|BF420967.1|BF420967 FM1_5_E09.g1_A003 Floral-Induced Mer... 212 8e-053
gb|CW466337.1|CW466337 fsbb001f217i16k0 Sorghum methylation... 204 2e-050
gb|BI098706.1|BI098706 IP1_36_A02.g1_A002 Immature pannicle... 192 8e-047
gb|BZ345168.1|BZ345168 hr46d11.b1 WGS-SbicolorF (JM107 adap... 178 1e-042
gb|CW134620.1|CW134620 104_518_11117403_116_34822_002 Sorgh... 105 1e-020
gb|CW403833.1|CW403833 fsbb001f095l18f0 Sorghum methylation... 105 1e-020
gb|CW461254.1|CW461254 fsbb001f208n06f0 Sorghum methylation... 105 1e-020
gb|AW563919.1|AW563919 LG1_275_E08.b1_A002 Light Grown 1 (L... 96 1e-017
gb|BF421041.1|BF421041 FM1_5_E09.b1_A003 Floral-Induced Mer... 68 3e-009
gb|CW109198.1|CW109198 104_481_11097955_148_34501_076 Sorgh... 50 7e-004
gb|CW325678.1|CW325678 104_820_11477816_116_35926_020 Sorgh... 50 7e-004
gb|CW440077.1|CW440077 fsbb001f158i17k0 Sorghum methylation... 48 0.003
gb|AW677937.1|AW677937 WS1_12_H11.b1_A002 Water-stressed 1 ... 48 0.003
gb|AW677985.1|AW677985 WS1_12_H11.g1_A002 Water-stressed 1 ... 48 0.003
gb|BG240187.1|BG240187 OV1_19_A01.b1_A002 Ovary 1 (OV1) Sor... 48 0.003
gb|CD463999.1|CD463999 ETH1_48_E06.b1_A002 Ethylene-treated... 48 0.003
gb|CD464142.1|CD464142 ETH1_48_E06.g1_A002 Ethylene-treated... 48 0.003
gb|BZ349779.1|BZ349779 hr45f04.g1 WGS-SbicolorF (JM107 adap... 46 0.011
gb|BE594523.1|BE594523 PI1_34_C11.b1_A002 Pathogen induced ... 44 0.045
gb|BF586272.1|BF586272 FM1_27_H01.b1_A003 Floral-Induced Me... 44 0.045
gb|CW513372.1|CW513372 115_4_10511535_1_30021 Sorghum unfil... 42 0.18
gb|CW097713.1|CW097713 104_464_11002615_116_34360_032 Sorgh... 42 0.18
gb|CW451515.1|CW451515 fsbb001f191j24f0 Sorghum methylation... 42 0.18
>gb|BG158302.1|BG158302 EM1_11_G01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 360
Score = 478 bits (241), Expect = e-133
Identities = 336/369 (91%), Gaps = 9/369 (2%)
Strand = Plus / Minus
Query: 1058 tctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaacttcg 1117
||||||||||||||| ||||||| |||||| |||||||| ||| ||||||| ||||||
Sbjct: 360 tctgacaccaattctaggaacccgtgggatactgttactcacattattggagcgacttcg 301
Query: 1118 ttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagcatt 1177
|||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 300 ctcatcaatgtcctgcatgttccttgcttcacatggctgagaagttgcaacagcagcatt 241
Query: 1178 gtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggcaga 1237
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtcacgagttctataacccaataattcttgaccttgcaagaccttgtggaattgggcaga 181
Query: 1238 ttccgcaaaatcaggacgaccgcttccatttggaactaggtagtctggattaacatgggg 1297
||||||||||||||||| ||| ||||||||||||||||||||||| | ||||
Sbjct: 180 ttccgcaaaatcaggacaaccacttccatttggaactaggtagtccg---------gggg 130
Query: 1298 aagacatggtttcagtctctttgcatttggtgcagacatgtgagatcctgaaactgaact 1357
|||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 129 aagacatggtttgagtctctttgcatttggtgcagacagatgggatcctgaaactgaact 70
Query: 1358 agtcagctcaatctcccaaggagaaatcctgtttggttgacgaaaatctacatcgtcatc 1417
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 69 agtcagctcaatctcccaaggagaaatcctgttcggtcgacgaaaatctacatcatcatc 10
Query: 1418 ccatcggac 1426
|||||||||
Sbjct: 9 ccatcggac 1
Score = 50.1 bits (25), Expect = 7e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 966 aatacttcttgaccttgcaagaccttttggaat 998
|||| ||||||||||||||||||||| ||||||
Sbjct: 221 aataattcttgaccttgcaagaccttgtggaat 189
>gb|CW191468.1|CW191468 104_613_11178510_148_36941_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178510, DNA
sequence
Length = 491
Score = 402 bits (203), Expect = e-110
Identities = 263/283 (92%)
Strand = Plus / Plus
Query: 984 aagaccttttggaatcttggagactccccaaagcctgagcaacggtaggaaaacctaggg 1043
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 1 aagaccttttggaatcttggagactcctcaaagcctgagcaatggtaggaaaacctaggg 60
Query: 1044 cttccgagtggtgttctgacaccaattcttggaacccccgggataatgttactcgcatcg 1103
|||| ||||||||||||||||||||||| |||||||| |||||| |||||||| |||
Sbjct: 61 tttcctagtggtgttctgacaccaattctaggaacccctgggatactgttactcacatta 120
Query: 1104 ttggagcaacttcgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagtt 1163
||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct: 121 gtggagcaacttcgctcatcaatgtactgcatgttccttgcttcacatggctgataagtt 180
Query: 1164 gcaacagcagcattgtcatgagttctataacccagtaattcttgaccttgcaagaccttg 1223
||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 gcagcagcagcattgtcacgagttctataacccaataattcttgaccttgcaagaccttg 240
Query: 1224 tggaattgggcagattccgcaaaatcaggacgaccgcttccat 1266
||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 241 tggaattgggcagattccgcaaaatcaggacaaccacttccat 283
Score = 133 bits (67), Expect = 6e-029
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 1294 ggggaagacatggtttcagtctctttgcatttggtgcagacatgtgagatcctgaaactg 1353
|||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 405 ggggaagacatggtttgagtctctttgcatttggtgcagacagatgggatcctgaaactg 464
Query: 1354 aactagtcagctcaatctcccaaggag 1380
|||||||||||||| ||||||||||||
Sbjct: 465 aactagtcagctcactctcccaaggag 491
Score = 50.1 bits (25), Expect = 7e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 966 aatacttcttgaccttgcaagaccttttggaat 998
|||| ||||||||||||||||||||| ||||||
Sbjct: 214 aataattcttgaccttgcaagaccttgtggaat 246
>gb|BI097863.1|BI097863 IP1_29_A01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 351 bits (177), Expect = 1e-094
Identities = 258/284 (90%), Gaps = 7/284 (2%)
Strand = Plus / Minus
Query: 292 tccacactacgcaacacagcctccaggacag-ttttccaatacatcagatcatcatatcc 350
|||||||||| ||| ||||||| ||||||| |||||||| | |||||||||||||||||
Sbjct: 312 tccacactacacaatacagccttcaggacaacttttccaacagatcagatcatcatatcc 253
Query: 351 actgttgaaacgtcaatcaccctagcaacaacaggcctctgctcatgaacggtggcacag 410
||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 252 actgttgaaacatcaatcaccctaccaacaacaggcctctgctcatgaatagtggcacaa 193
Query: 411 ctgttgcccagcgatttcggcacttgttgcttcaaagacaggaagggggatggatagttg 470
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 192 ctgttgcccagcgattttggcacgtgttgcttcaaagacaggaagggggatggatagttg 133
Query: 471 gtgttgatgtcaccacagcccttttctttcattgctggaaccttctcggtcaaagatatg 530
| | ||||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 132 g------tatcaccacagtccttttctttgattgctggaaccttctcagtcaaagatatg 79
Query: 531 ccaaatattttgcaactgtttttgctaacttccctgttgtctga 574
||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 78 ccaaatattttgcaactatttttggtaacttccctgttgtctga 35
Score = 200 bits (101), Expect = 3e-049
Identities = 144/157 (91%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 74 agaactatgccaa-gcaaacaaaccctctataaatgggtctgacatggcatacagattat 132
||||||||||||| ||||| |||| |||||||||||||| || ||| |||||| | ||||
Sbjct: 531 agaactatgccaatgcaaataaacactctataaatgggtttgtcatagcatacggcttat 472
Query: 133 gaacatagaggcaagttgtgagcagcaactagtgctgataacacggagcactcacggttg 192
|||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||
Sbjct: 471 aaacatagaggcaagttgtaagcagcaacaaatgctgataacatggagcactcacggttg 412
Query: 193 tcatacaaagtgctctaacagctacaactaggataca 229
|||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcatacaaagtgctctaacagctacaactaggataca 375
>gb|CF758034.1|CF758034 DSAF1_26_E01.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_26_E01_A011 3', mRNA sequence
Length = 567
Score = 351 bits (177), Expect = 1e-094
Identities = 258/284 (90%), Gaps = 7/284 (2%)
Strand = Plus / Minus
Query: 292 tccacactacgcaacacagcctccaggacag-ttttccaatacatcagatcatcatatcc 350
|||||||||| ||| ||||||| ||||||| |||||||| | |||||||||||||||||
Sbjct: 357 tccacactacacaatacagccttcaggacaacttttccaacagatcagatcatcatatcc 298
Query: 351 actgttgaaacgtcaatcaccctagcaacaacaggcctctgctcatgaacggtggcacag 410
||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 297 actgttgaaacatcaatcaccctaccaacaacaggcctctgctcatgaatagtggcacaa 238
Query: 411 ctgttgcccagcgatttcggcacttgttgcttcaaagacaggaagggggatggatagttg 470
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctgttgcccagcgattttggcacgtgttgcttcaaagacaggaagggggatggatagttg 178
Query: 471 gtgttgatgtcaccacagcccttttctttcattgctggaaccttctcggtcaaagatatg 530
| | ||||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 177 g------tatcaccacagtccttttctttgattgctggaaccttctcagtcaaagatatg 124
Query: 531 ccaaatattttgcaactgtttttgctaacttccctgttgtctga 574
||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 123 ccaaatattttgcaactatttttggtaacttccctgttgtctga 80
Score = 188 bits (95), Expect = 1e-045
Identities = 131/143 (91%)
Strand = Plus / Minus
Query: 87 gcaaacaaaccctctataaatgggtctgacatggcatacagattatgaacatagaggcaa 146
||||| |||| |||||||||||||| || ||| |||||| | |||| |||||||||||||
Sbjct: 562 gcaaataaacactctataaatgggtttgtcatagcatacggcttataaacatagaggcaa 503
Query: 147 gttgtgagcagcaactagtgctgataacacggagcactcacggttgtcatacaaagtgct 206
||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 502 gttgtaagcagcaacaaatgctgataacatggagcactcacggttgtcatacaaagtgct 443
Query: 207 ctaacagctacaactaggataca 229
|||||||||||||||||||||||
Sbjct: 442 ctaacagctacaactaggataca 420
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 582 gcaacagcgggatgagatttctcaacggtcacatctctgtttcccgttcctccagaaaca 641
||||||| ||| ||| |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 63 gcaacagtgggctgaaatttctcaacggtcacatctctatttcccattcctccagaaaca 4
Query: 642 t 642
|
Sbjct: 3 t 3
>gb|BG101898.1|BG101898 RHIZ2_21_C02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 499
Score = 321 bits (162), Expect = 1e-085
Identities = 234/257 (91%), Gaps = 7/257 (2%)
Strand = Plus / Minus
Query: 292 tccacactacgcaacacagcctccaggacagtttt-ccaatacatcagatcatcatatcc 350
|||||||||||||| ||||||||||||||| |||| |||| | |||||||||||||||||
Sbjct: 256 tccacactacgcaatacagcctccaggacaatttttccaacagatcagatcatcatatcc 197
Query: 351 actgttgaaacgtcaatcaccctagcaacaacaggcctctgctcatgaacggtggcacag 410
||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 196 actgttgaaacatcaatcaccctaccaacaacaggcctctgctcatgaatagtggcacaa 137
Query: 411 ctgttgcccagcgatttcggcacttgttgcttcaaagacaggaagggggatggatagttg 470
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctgttgcccagcgattttggcacgtgttgcttcaaagacaggaagggggatggatagttg 77
Query: 471 gtgttgatgtcaccacagcccttttctttcattgctggaaccttctcggtcaaagatatg 530
| | |||||| || |||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 76 g------tatcaccagagtccttttctttgattgctggaaccttctcagtcaaagatatg 23
Query: 531 ccaaatattttgcaact 547
|||||||||||||||||
Sbjct: 22 ccaaatattttgcaact 6
Score = 212 bits (107), Expect = 8e-053
Identities = 147/159 (92%), Gaps = 1/159 (0%)
Strand = Plus / Minus
Query: 73 tagaactatgccaa-gcaaacaaaccctctataaatgggtctgacatggcatacagatta 131
|||||||||||||| ||||||||||||||||||||||||| || ||| ||||| | |||
Sbjct: 478 tagaactatgccaaagcaaacaaaccctctataaatgggtttgtcatagcatatggctta 419
Query: 132 tgaacatagaggcaagttgtgagcagcaactagtgctgataacacggagcactcacggtt 191
| |||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct: 418 taaacaaagaggcaagttgtgagcagcaacaaatgctgataacatggagcactcacggtt 359
Query: 192 gtcatacaaagtgctctaacagctacaactaggatacaa 230
|||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtcatacaaagtgctctaacagctacaactaggatacaa 320
>gb|BG158203.1|BG158203 EM1_11_G01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 315 bits (159), Expect = 8e-084
Identities = 224/246 (91%), Gaps = 6/246 (2%)
Strand = Plus / Minus
Query: 323 ttttccaatacatcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaac 382
|||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 240 ttttccaacagatcagatcatcatatccactgttgaaacatcaatcaccctaccaacaac 181
Query: 383 aggcctctgctcatgaacggtggcacagctgttgcccagcgatttcggcacttgttgctt 442
||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 180 aggcctctgctcatgaatagtggcacaactgttgcccagcgattttggcacgtgttgctt 121
Query: 443 caaagacaggaagggggatggatagttggtgttgatgtcaccacagcccttttctttcat 502
||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||
Sbjct: 120 caaagacaggaagggggatggatagttgg------tctcaccacagtccttttctttgat 67
Query: 503 tgctggaaccttctcggtcaaagatatgccaaatattttgcaactgtttttgctaacttc 562
||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||
Sbjct: 66 tgctggaaccttctcagtcaaatatatgccaaatattttgcaactatttttggtaacttc 7
Query: 563 cctgtt 568
||||||
Sbjct: 6 cctgtt 1
Score = 153 bits (77), Expect = 7e-035
Identities = 114/125 (91%), Gaps = 1/125 (0%)
Strand = Plus / Minus
Query: 105 aatgggtctgacatggcatacagattatgaacatagaggcaagttgtgagcagcaactag 164
||||||| || ||| |||||| | |||| |||||||||||||||||| ||||||||| |
Sbjct: 460 aatgggtttgtcatagcatacggcttataaacatagaggcaagttgtaagcagcaacaaa 401
Query: 165 tgctgataacacggagcactcacggttgtcatacaaagtgctctaacagctacaactagg 224
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 400 tgctgataacatggagcactcacggttgtcat-caaagtgctctaacagctacaactagg 342
Query: 225 ataca 229
|||||
Sbjct: 341 ataca 337
>gb|CW466336.1|CW466336 fsbb001f217i16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f217i16, DNA
sequence
Length = 712
Score = 307 bits (155), Expect = 2e-081
Identities = 245/275 (89%)
Strand = Plus / Minus
Query: 582 gcaacagcgggatgagatttctcaacggtcacatctctgtttcccgttcctccagaaaca 641
||||||| ||| ||| |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 279 gcaacagtgggctgaaatttctcaacggtcacatctctatttcccattcctccagaaaca 220
Query: 642 tgatgagcctggagcatcgtcgtttgctcagttcctccgatgcctccagcatggacaaac 701
| |||||||||||||||| | ||||||||||||| ||| || |||||||||||| |||||
Sbjct: 219 ttatgagcctggagcatcattgtttgctcagttcttccaatacctccagcatggccaaac 160
Query: 702 attgcgcgtctatcctcgttcttattcaagtggaaatgcccaaattcaaatggggacatc 761
||||| || ||||||| ||||||| || ||| |||||||||||||||| |||||||||
Sbjct: 159 attgcacgcatatcctcattcttatccatgtgacaatgcccaaattcaaaaggggacatc 100
Query: 762 tttggatcacctcgttgaaacatcaggacagatggtggggatgaggattgagatggaaca 821
||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct: 99 tttggattatctcgttgaaacattaggacagatggtggcgatgaggattgagatggaata 40
Query: 822 gctggtgcttgttggccacgaaaagcacatccatg 856
|||||||||||| |||||||||||||| |||||
Sbjct: 39 gctggtgcttgtgtcccacgaaaagcacacccatg 5
Score = 226 bits (114), Expect = 6e-057
Identities = 158/173 (91%), Gaps = 6/173 (3%)
Strand = Plus / Minus
Query: 402 gtggcacagctgttgcccagcgatttcggcacttgttgcttcaaagacaggaagggggat 461
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 462 gtggcacaactgttgcccagcgattttggcacgtgttgcttcaaagacaggaagggggat 403
Query: 462 ggatagttggtgttgatgtcaccacagcccttttctttcattgctggaaccttctcggtc 521
||||||||||| | |||||||| |||||||||| ||||||||||||||||| |||
Sbjct: 402 ggatagttggtat------caccacagtccttttctttgattgctggaaccttctcagtc 349
Query: 522 aaagatatgccaaatattttgcaactgtttttgctaacttccctgttgtctga 574
|||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 348 aaagatatgccaaatattttgcaactatttttggtaacttccctgttgtctga 296
Score = 121 bits (61), Expect = 2e-025
Identities = 73/77 (94%)
Strand = Plus / Minus
Query: 323 ttttccaatacatcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaac 382
|||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 613 ttttccaacagatcagatcatcatatccactgttgaaacatcaatcaccctaccaacaac 554
Query: 383 aggcctctgctcatgaa 399
|||||||||||||||||
Sbjct: 553 aggcctctgctcatgaa 537
>gb|BG102131.1|BG102131 RHIZ2_21_C02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 484
Score = 268 bits (135), Expect = 2e-069
Identities = 165/175 (94%)
Strand = Plus / Minus
Query: 1622 ggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaacattaggtag 1681
|||||||||||||||||||||||| ||||| ||||||||||||||||| || |||| |||
Sbjct: 484 ggggttgtagtagatgtggaacacgctttttgtggccacagcatgtgctacgttagctag 425
Query: 1682 tgaaccaagatttgagcactggttataaagagctggaaaagcagatccatttttaagctg 1741
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgaaccaagattagaacactgattataaagagctggaaaagcagatccatttttaagctg 365
Query: 1742 agctgcacggcgcactccaagtcttagctccccattatcacccctcaaaaatagt 1796
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 364 agctgcacggcgcactccaagtcgtagctccccatcatcacccctcaaaaatagt 310
>gb|BF420967.1|BF420967 FM1_5_E09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 574
Score = 212 bits (107), Expect = 8e-053
Identities = 147/159 (92%), Gaps = 1/159 (0%)
Strand = Plus / Minus
Query: 73 tagaactatgccaa-gcaaacaaaccctctataaatgggtctgacatggcatacagatta 131
|||||||||||||| ||||||||||||||||||||||||| || ||| ||||| | |||
Sbjct: 369 tagaactatgccaaagcaaacaaaccctctataaatgggtttgtcatagcatatggctta 310
Query: 132 tgaacatagaggcaagttgtgagcagcaactagtgctgataacacggagcactcacggtt 191
| |||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct: 309 taaacaaagaggcaagttgtgagcagcaacaaatgctgataacatggagcactcacggtt 250
Query: 192 gtcatacaaagtgctctaacagctacaactaggatacaa 230
|||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtcatacaaagtgctctaacagctacaactaggatacaa 211
Score = 188 bits (95), Expect = 1e-045
Identities = 132/143 (92%), Gaps = 1/143 (0%)
Strand = Plus / Minus
Query: 292 tccacactacgcaacacagcctccaggacagtttt-ccaatacatcagatcatcatatcc 350
|||||||||||||| ||||||||||||||| |||| |||| | |||||||||||||||||
Sbjct: 147 tccacactacgcaatacagcctccaggacaatttttccaacagatcagatcatcatatcc 88
Query: 351 actgttgaaacgtcaatcaccctagcaacaacaggcctctgctcatgaacggtggcacag 410
||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 87 actgttgaaacatcaatcaccctaccaacaacaggcctctgctcatgaatagtggcacaa 28
Query: 411 ctgttgcccagcgatttcggcac 433
||||||||||||||||| |||||
Sbjct: 27 ctgttgcccagcgattttggcac 5
>gb|CW466337.1|CW466337 fsbb001f217i16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f217i16, DNA
sequence
Length = 765
Score = 204 bits (103), Expect = 2e-050
Identities = 146/159 (91%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 72 ctagaactatgccaa-gcaaacaaaccctctataaatgggtctgacatggcatacagatt 130
||||||||||||||| ||||| |||| |||||||||||||| || ||| |||||| | ||
Sbjct: 274 ctagaactatgccaatgcaaataaacactctataaatgggtttgtcatagcatacggctt 333
Query: 131 atgaacatagaggcaagttgtgagcagcaactagtgctgataacacggagcactcacggt 190
|| |||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||
Sbjct: 334 ataaacatagaggcaagttgtaagcagcaacaaatgctgataacatggagcactcacggt 393
Query: 191 tgtcatacaaagtgctctaacagctacaactaggataca 229
|||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgtcatacaaagtgctctaacagctacaactaggataca 432
Score = 107 bits (54), Expect = 4e-021
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 323 ttttccaatacatcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaac 382
|||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 642 ttttccaacagatcagatcatcatatccactgttgaaacatcaatcaccctaccaacaac 701
Query: 383 agg-cctctgctcatgaa 399
||| ||||||||||||||
Sbjct: 702 aggccctctgctcatgaa 719
>gb|BI098706.1|BI098706 IP1_36_A02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 309
Score = 192 bits (97), Expect = 8e-047
Identities = 143/157 (91%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 74 agaactatgccaa-gcaaacaaaccctctataaatgggtctgacatggcatacagattat 132
||||||||||||| ||||| |||| |||||||||||||| || ||| |||||| | ||||
Sbjct: 309 agaactatgccaatgcaaataaacactctataaatgggtttgtcatagcatacggcttat 250
Query: 133 gaacatagaggcaagttgtgagcagcaactagtgctgataacacggagcactcacggttg 192
|||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||
Sbjct: 249 aaacatagaggcaagttgtaagcagcaacaaatgctgataacatggagcactcacggttg 190
Query: 193 tcatacaaagtgctctaacagctacaactaggataca 229
||||||||||||||||||||||||| |||||||||||
Sbjct: 189 tcatacaaagtgctctaacagctaccactaggataca 153
Score = 83.8 bits (42), Expect = 5e-014
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 296 cactacgcaacacagcctccaggacag-ttttccaatacatcagatcatcatatccactg 354
|||||| ||| ||||||| ||||||| |||||||| | |||||||||||||||||||||
Sbjct: 86 cactacacaatacagccttcaggacaacttttccaacagatcagatcatcatatccactg 27
Query: 355 ttgaaacgtcaatcaccctagcaaca 380
|||||| |||||||||||| |||||
Sbjct: 26 gtgaaacatcaatcaccctaccaaca 1
>gb|BZ345168.1|BZ345168 hr46d11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr46d11 5', DNA sequence
Length = 262
Score = 178 bits (90), Expect = 1e-042
Identities = 105/110 (95%)
Strand = Plus / Plus
Query: 1674 ttaggtagtgaaccaagatttgagcactggttataaagagctggaaaagcagatccattt 1733
|||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 9 ttagctagtgaaccaagattagaacactgattataaagagctggaaaagcagatccattt 68
Query: 1734 ttaagctgagctgcacggcgcactccaagtcttagctccccattatcacc 1783
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 69 ttaagctgagctgcacggcgcactccaagtcttagctccccatcatcacc 118
>gb|CW134620.1|CW134620 104_518_11117403_116_34822_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117403, DNA
sequence
Length = 422
Score = 105 bits (53), Expect = 1e-020
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 964 gaaatacttcttgaccttgcaagaccttttggaatcttggagactccccaaagcctgagc 1023
|||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 72 gaaacacttcttgaccttgcaagaccttttggaatctttgagattccccaaagcctgagc 13
Query: 1024 aacggtagg 1032
|| ||||||
Sbjct: 12 aatggtagg 4
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 65 ttcttgaccttgcaagaccttttggaat 38
>gb|CW403833.1|CW403833 fsbb001f095l18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095l18, DNA
sequence
Length = 764
Score = 105 bits (53), Expect = 1e-020
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 964 gaaatacttcttgaccttgcaagaccttttggaatcttggagactccccaaagcctgagc 1023
|||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 350 gaaacacttcttgaccttgcaagaccttttggaatctttgagattccccaaagcctgagc 291
Query: 1024 aacggtagg 1032
|| ||||||
Sbjct: 290 aatggtagg 282
Score = 67.9 bits (34), Expect = 3e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 123 aattcttgaccttgcaagaccttgtggaatctgacagatcccgcaaaatc 74
Score = 52.0 bits (26), Expect = 2e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||||| ||||||||
Sbjct: 121 ttcttgaccttgcaagaccttgtggaatct 92
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 343 ttcttgaccttgcaagaccttttggaat 316
>gb|CW461254.1|CW461254 fsbb001f208n06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f208n06, DNA
sequence
Length = 773
Score = 105 bits (53), Expect = 1e-020
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 1727 tccatttttaagctgagctgcacggcgcactccaagtcttagctccccattatcacc 1783
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 tccatttttaagctgagctgcacggcgcactccaagtcttagctccccatcatcacc 57
>gb|AW563919.1|AW563919 LG1_275_E08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 95.6 bits (48), Expect = 1e-017
Identities = 153/188 (81%)
Strand = Plus / Minus
Query: 1488 atccctgtgcatcttctttcagaagcatcatcgctctcatatctcactttgaacctcgaa 1547
||||| ||||| ||||||||||||||||| || || ||||||| || | || | |||
Sbjct: 379 atcccagtgcaccttctttcagaagcatcgtcactttcatatcgcattctgcatctcatt 320
Query: 1548 ccagcagaaaatggttgactgaagctcttgataaacttcgaaaatggtataatgaattca 1607
||| |||||| ||||||| | ||||| || | |||||| || | |||| ||||||||||
Sbjct: 319 ccaacagaaattggttgattcaagcttctggtgaacttccaatagggtacaatgaattca 260
Query: 1608 gattggcttaatctggggttgtagtagatgtggaacacacttttggtggccacagcatgt 1667
||||| ||||| ||||| |||||||| |||||||| ||| | | ||||||||||| |||
Sbjct: 259 gattgacttaacctgggattgtagtaaatgtggaaaacagtcctcgtggccacagcttgt 200
Query: 1668 gcaacatt 1675
||||||||
Sbjct: 199 gcaacatt 192
>gb|BF421041.1|BF421041 FM1_5_E09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 483
Score = 67.9 bits (34), Expect = 3e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 1755 actccaagtcttagctccccattatcacccctcaaaaatagt 1796
|||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 483 actccaagtcgtagctccccatcatcacccctcaaaaatagt 442
>gb|CW109198.1|CW109198 104_481_11097955_148_34501_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097955, DNA
sequence
Length = 360
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
|||||||||||||||||||||| ||||||
Sbjct: 155 aattcttgaccttgcaagacctggtggaa 127
>gb|CW325678.1|CW325678 104_820_11477816_116_35926_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477816, DNA
sequence
Length = 630
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
|||||||||||||||||||||| ||||||
Sbjct: 483 aattcttgaccttgcaagacctggtggaa 455
>gb|CW440077.1|CW440077 fsbb001f158i17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f158i17, DNA
sequence
Length = 446
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaacatt 1675
||||| |||||||| |||||||| ||| | | ||||||||||| |||||||||||
Sbjct: 43 ctgggattgtagtaaatgtggaaaacagtcctcgtggccacagcttgtgcaacatt 98
>gb|AW677937.1|AW677937 WS1_12_H11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 560
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 392 cttcttgaccttgcaagacctttt 415
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 393 ttcttgaccttgcaagacctt 413
>gb|AW677985.1|AW677985 WS1_12_H11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 612
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 370 cttcttgaccttgcaagacctttt 393
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 371 ttcttgaccttgcaagacctt 391
>gb|BG240187.1|BG240187 OV1_19_A01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 478
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 388 cttcttgaccttgcaagacctttt 411
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 389 ttcttgaccttgcaagacctt 409
>gb|CD463999.1|CD463999 ETH1_48_E06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_E06_A002 3', mRNA sequence
Length = 562
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 137 cttcttgaccttgcaagacctttt 160
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 138 ttcttgaccttgcaagacctt 158
>gb|CD464142.1|CD464142 ETH1_48_E06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_E06_A002 5', mRNA sequence
Length = 663
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 404 cttcttgaccttgcaagacctttt 427
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 405 ttcttgaccttgcaagacctt 425
>gb|BZ349779.1|BZ349779 hr45f04.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr45f04 5', DNA sequence
Length = 601
Score = 46.1 bits (23), Expect = 0.011
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || || ||||||| || | || | ||| ||| |||||| |
Sbjct: 209 cttctttcagaagcatcgtcactttcatatcgcattctgcatctcattccaacagaaatt 268
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||| | ||||| || | |||||| || | |||| ||||||||||||||| |||||
Sbjct: 269 ggttgattcaagcttctggtgaacttccaatagggtacaatgaattcagattgacttaa 327
>gb|BE594523.1|BE594523 PI1_34_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.045
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1183 gagttctataacccagtaattcttgaccttgcaagacc 1220
|||| ||| |||||| |||||||||||||||||||||
Sbjct: 523 gagtcctaaaacccatcaattcttgaccttgcaagacc 486
>gb|BF586272.1|BF586272 FM1_27_H01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 404
Score = 44.1 bits (22), Expect = 0.045
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1183 gagttctataacccagtaattcttgaccttgcaagacc 1220
|||| ||| |||||| |||||||||||||||||||||
Sbjct: 60 gagtcctaaaacccatcaattcttgaccttgcaagacc 23
>gb|CW513372.1|CW513372 115_4_10511535_1_30021 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10511535, DNA sequence
Length = 631
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagaccttttg 994
||||||||||||||||||| |||||
Sbjct: 164 cttcttgaccttgcaagactttttg 140
>gb|CW097713.1|CW097713 104_464_11002615_116_34360_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002615, DNA
sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagaccttttg 994
||||||||||||||||||| |||||
Sbjct: 365 cttcttgaccttgcaagactttttg 389
>gb|CW451515.1|CW451515 fsbb001f191j24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191j24, DNA
sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagaccttttg 994
||||||||||||||||||| |||||
Sbjct: 520 cttcttgaccttgcaagactttttg 496
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 439,512
Number of Sequences: 832831
Number of extensions: 439512
Number of successful extensions: 117446
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 117336
Number of HSP's gapped (non-prelim): 98
length of query: 1796
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1776
effective length of database: 474,703,049
effective search space: 843072615024
effective search space used: 843072615024
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)