BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.1
(964 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN125467.1|CN125467 RHOH1_11_F09.b1_A002 Acid- and alkal... 825 0.0
gb|CD225838.1|CD225838 CCC1_41_H03.g1_A007 Callus culture/c... 763 0.0
gb|CX612538.1|CX612538 GABR1_3_B03.b1_A002 GA- or brassinol... 743 0.0
gb|BE361774.1|BE361774 DG1_82_C07.b1_A002 Dark Grown 1 (DG1... 710 0.0
gb|BG048203.1|BG048203 OV1_28_H12.g1_A002 Ovary 1 (OV1) Sor... 706 0.0
gb|CD428670.1|CD428670 ETH1_33_C11.g1_A002 Ethylene-treated... 704 0.0
gb|BG047885.1|BG047885 OV1_28_H12.b1_A002 Ovary 1 (OV1) Sor... 694 0.0
gb|BF317980.1|BF317980 OV1_10_C09.b1_A002 Ovary 1 (OV1) Sor... 692 0.0
gb|BG357818.1|BG357818 OV2_30_F08.b1_A002 Ovary 2 (OV2) Sor... 670 0.0
gb|BE361835.1|BE361835 DG1_82_C07.g1_A002 Dark Grown 1 (DG1... 668 0.0
gb|BG357498.1|BG357498 OV2_30_F08.g1_A002 Ovary 2 (OV2) Sor... 668 0.0
gb|CD225729.1|CD225729 CCC1_41_H03.b1_A007 Callus culture/c... 668 0.0
gb|CN125551.1|CN125551 RHOH1_11_F09.g1_A002 Acid- and alkal... 654 0.0
gb|BF317840.1|BF317840 OV1_10_C09.g1_A002 Ovary 1 (OV1) Sor... 583 e-164
gb|BG412013.1|BG412013 OV2_40_H11.g1_A002 Ovary 2 (OV2) Sor... 575 e-162
gb|BM325874.1|BM325874 PIC1_53_H06.b1_A002 Pathogen-infecte... 541 e-152
gb|BM330587.1|BM330587 PIC1_53_H07.g1_A002 Pathogen-infecte... 486 e-135
gb|BM330586.1|BM330586 PIC1_53_H06.g1_A002 Pathogen-infecte... 434 e-120
gb|CN129474.1|CN129474 RHOH1_35_D06.g1_A002 Acid- and alkal... 404 e-111
gb|CF433699.1|CF433699 NIT1_28_G06.g1_A002 Nitrogen-deficie... 389 e-106
gb|CW052317.1|CW052317 104_292_10515512_115_30287 Sorghum m... 379 e-103
gb|CL196725.1|CL196725 104_423_10943246_114_32326_061 Sorgh... 377 e-102
gb|CW052315.1|CW052315 104_292_10515512_114_30286 Sorghum m... 373 e-101
gb|CW243361.1|CW243361 104_703_11219979_116_37571_004 Sorgh... 373 e-101
gb|CF488389.1|CF488389 POL1_49_D06.g1_A002 Pollen Sorghum b... 361 8e-098
gb|CF769697.1|CF769697 DSBF1_3_F04.b1_A010 Drought-stressed... 357 1e-096
gb|CN136882.1|CN136882 OX1_53_H01.g1_A002 Oxidatively-stres... 345 5e-093
gb|CN129384.1|CN129384 RHOH1_35_D06.b3_A002 Acid- and alkal... 341 7e-092
gb|CW243362.1|CW243362 104_703_11219979_148_37572_004 Sorgh... 313 2e-083
gb|CF485453.1|CF485453 POL1_31_D05.g1_A002 Pollen Sorghum b... 311 7e-083
gb|BE594574.1|BE594574 PI1_34_H06.b1_A002 Pathogen induced ... 309 3e-082
gb|CF485141.1|CF485141 POL1_29_E05.g1_A002 Pollen Sorghum b... 283 1e-074
gb|CN136795.1|CN136795 OX1_53_H01.b1_A002 Oxidatively-stres... 281 6e-074
gb|CW052314.1|CW052314 104_292_10515512_114_30189 Sorghum m... 250 2e-064
gb|CF433642.1|CF433642 NIT1_28_G06.b1_A002 Nitrogen-deficie... 242 5e-062
gb|CF434383.1|CF434383 NIT1_29_F09.g1_A002 Nitrogen-deficie... 240 2e-061
gb|AW564079.1|AW564079 LG1_282_C06.b1_A002 Light Grown 1 (L... 218 7e-055
gb|BG102419.1|BG102419 RHIZ2_23_D12.b1_A003 Rhizome2 (RHIZ2... 214 1e-053
gb|CF428962.1|CF428962 PH1_18_E07.g1_A002 Phosphorous-defic... 212 4e-053
gb|CF428854.1|CF428854 PH1_18_E07.b1_A002 Phosphorous-defic... 204 1e-050
gb|CW228994.1|CW228994 104_670_11207069_116_37259_029 Sorgh... 172 4e-041
gb|CW243974.1|CW243974 104_704_11220339_116_37577_004 Sorgh... 172 4e-041
gb|CW253913.1|CW253913 104_717_11225368_116_35113_052 Sorgh... 172 4e-041
gb|CW387303.1|CW387303 fsbb001f071j10f0 Sorghum methylation... 172 4e-041
gb|CF428465.1|CF428465 PH1_15_D08.b1_A002 Phosphorous-defic... 165 9e-039
gb|CW243975.1|CW243975 104_704_11220339_148_37578_004 Sorgh... 163 4e-038
gb|CW303725.1|CW303725 104_788_11465394_116_35692_073 Sorgh... 163 4e-038
gb|CW253914.1|CW253914 104_717_11225368_148_35109_052 Sorgh... 155 9e-036
gb|CW387304.1|CW387304 fsbb001f071j10k0 Sorghum methylation... 143 3e-032
gb|AW283903.1|AW283903 LG1_282_C06.g1_A002 Light Grown 1 (L... 139 5e-031
gb|CW052316.1|CW052316 104_292_10515512_115_30190 Sorghum m... 135 8e-030
gb|CF485059.1|CF485059 POL1_29_E05.b1_A002 Pollen Sorghum b... 123 3e-026
gb|CA408285.1|CA408285 PRC-0030 pRC Sorghum halepense cDNA ... 98 2e-018
gb|CW071165.1|CW071165 104_323_10591406_114_30472 Sorghum m... 82 1e-013
gb|CA408284.1|CA408284 PRC-0029 pRC Sorghum halepense cDNA ... 76 7e-012
gb|CW101972.1|CW101972 104_470_11011088_148_34415_032 Sorgh... 64 3e-008
gb|CW265234.1|CW265234 104_734_11231752_148_35264_058 Sorgh... 64 3e-008
gb|CW484611.1|CW484611 fsbb001f246n15f0 Sorghum methylation... 64 3e-008
gb|CW083687.1|CW083687 104_426_10945321_116_32440_015 Sorgh... 60 4e-007
gb|CW228995.1|CW228995 104_670_11207069_148_37260_029 Sorgh... 58 2e-006
gb|CW056716.1|CW056716 104_298_10517831_115_30157 Sorghum m... 56 6e-006
gb|CW178634.1|CW178634 104_592_11159670_148_36619_023 Sorgh... 56 6e-006
gb|BE362553.1|BE362553 DG1_87_H03.g1_A002 Dark Grown 1 (DG1... 56 6e-006
gb|CF428549.1|CF428549 PH1_15_D08.g1_A002 Phosphorous-defic... 56 6e-006
gb|CL196726.1|CL196726 104_423_10943246_116_32330_061 Sorgh... 50 4e-004
gb|BE362521.1|BE362521 DG1_87_H03.b1_A002 Dark Grown 1 (DG1... 50 4e-004
gb|CW298619.1|CW298619 104_781_11462675_116_35660_044 Sorgh... 46 0.006
gb|CW298620.1|CW298620 104_781_11462675_148_35656_044 Sorgh... 46 0.006
gb|CW302510.1|CW302510 104_786_11464758_116_35663_019 Sorgh... 46 0.006
gb|CW339570.1|CW339570 104_840_11485340_116_36145_076 Sorgh... 46 0.006
gb|CW378801.1|CW378801 fsbb001f057l18f0 Sorghum methylation... 46 0.006
gb|CW378802.1|CW378802 fsbb001f057l18k0 Sorghum methylation... 46 0.006
gb|CW409682.1|CW409682 fsbb001f104b14f0 Sorghum methylation... 46 0.006
gb|CL156080.1|CL156080 104_342_10782609_114_31473_321 Sorgh... 40 0.37
gb|CW425466.1|CW425466 fsbb001f136f22k0 Sorghum methylation... 40 0.37
gb|CW432352.1|CW432352 fsbb001f147a05k0 Sorghum methylation... 40 0.37
>gb|CN125467.1|CN125467 RHOH1_11_F09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_F09_A002 3', mRNA sequence
Length = 755
Score = 825 bits (416), Expect = 0.0
Identities = 584/639 (91%), Gaps = 7/639 (1%)
Strand = Plus / Plus
Query: 167 ttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggcta 226
|||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||
Sbjct: 1 ttggcaaactagctgaagagatcaagaaaggtgcttcatctattgaaggtgttgaggcta 60
Query: 227 agatatggcaggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgcccc 286
| ||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||
Sbjct: 61 aaatatggcaggtccctgaaactctccctgaggaagtgcttggaaagatgggcgcacccc 120
Query: 287 ctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctct 346
||||||| || |||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct: 121 ctaagcctgatgtgccagtcatcacaccgcaagaacttgcagaagctgatggaatcctct 180
Query: 347 ttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgcca 406
| |||||||| |||||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct: 181 tggggtttccaacaaggtttggaatgatggcagcgcaaatgaaggcgttcttcgatgcta 240
Query: 407 ccggtgggctctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagca 466
| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 241 ctggtgggctctggagggagcagagccttgctggcaagcctgccggcatctttttcagca 300
Query: 467 ctggaacccagggtggtggccaagagactacaccgctgacggcgattacccagctgacgc 526
||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
Sbjct: 301 ctggaacccagggtggtggccaagagactacaccgttgaccgcgattacccagttgacac 360
Query: 527 accacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatgg 586
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 361 accacggcatggtgtttgtgcctgtgggctacaccttcggcgccaagctgttcggcatgg 420
Query: 587 accaggtccagggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggt 646
||||||| ||||||||||||||||| || || ||||||||||| |||||||| |||||||
Sbjct: 421 accaggttcagggtggcagcccctatggtgctggcacgttcgctgccgacggctcgaggt 480
Query: 647 ggccgagcgaggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcg 706
||||||| ||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 481 ggccgagtgaggtggagctcgagcacgcctttcaccaggggaagtacttcgcaggcatcg 540
Query: 707 ccaagaagctcaagggctctgcttgatctgcacatacccctctgtcagatatcata---- 762
|||||||||||||||| |||||||||||||||||||||| | ||||||| | ||
Sbjct: 541 ccaagaagctcaagggttctgcttgatctgcacataccc--ttttcagataccgtaaaac 598
Query: 763 -tttacagattcgtcatacccgtcaatagattggtctgt 800
|||||||||||||||||||| ||||||||| |||||||
Sbjct: 599 atttacagattcgtcatacccatcaatagatcggtctgt 637
Score = 67.9 bits (34), Expect = 2e-009
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 866 tgctctggtgacttggtttgtaatttggagttggactatcgttgtttctgccgcataaat 925
|||||||||||||||||| ||||| |||||||||||||| | ||||||| ||| |||||
Sbjct: 684 tgctctggtgacttggtt-gtaatctggagttggactattgc-gtttctgtcgcttaaat 741
Query: 926 ttcgatgatt 935
||||||||||
Sbjct: 742 ttcgatgatt 751
>gb|CD225838.1|CD225838 CCC1_41_H03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_H03_A007 5', mRNA sequence
Length = 634
Score = 763 bits (385), Expect = 0.0
Identities = 505/545 (92%)
Strand = Plus / Plus
Query: 94 ggtcacaggagctccgagacctctccaatggcggttaagatctacgttgtgtactattcc 153
|||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| |||
Sbjct: 87 ggtcacaggagctccgagccctctccaatggcggtcaaggtctacgtcgtgtactactcc 146
Query: 154 atgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaa 213
| |||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct: 147 acgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctcatctattgaa 206
Query: 214 ggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgcttggaaag 273
|||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 207 ggtgttgaggctaaaatatggcaggtccctgaaactctccctgaggaagtgcttggaaag 266
Query: 274 atgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggct 333
|||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 267 atgggcgcaccccctaagcctgatgtgccagtcatcacaccgcaagaacttgcagaagct 326
Query: 334 gacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcg 393
|| || |||||||| |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct: 327 gatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgcaaatgaaggcg 386
Query: 394 ttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgccggc 453
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 387 ttcttcgatgctactggtgggctctggagggagcagagccttgctggcaagcctgccggc 446
Query: 454 atgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacggcgatt 513
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 447 atcttcttcagcactggaacccagggtggtggccaagagactacaccgttgaccgcgatt 506
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaag 573
|||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 507 acccagttgacacaccacggcatggtgtttgtgcctgtgggctacaccttcggcgccaag 566
Query: 574 ctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgccgcc 633
|||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||
Sbjct: 567 ctgttcggcatggaccaggttcagggtggcagcccctatggtgctggcacgttcgctgcc 626
Query: 634 gacgg 638
|||||
Sbjct: 627 gacgg 631
>gb|CX612538.1|CX612538 GABR1_3_B03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_3_B03_A002 3', mRNA sequence
Length = 734
Score = 743 bits (375), Expect = 0.0
Identities = 522/570 (91%), Gaps = 7/570 (1%)
Strand = Plus / Plus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 102 aggtccctgaaactctccctgaggaagtgcttggaaagatgggcgcaccccctaagcctg 161
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
| |||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||||
Sbjct: 162 atgtgccagtcatcacaccgcaagaacttgcagaagctgatggaatcctcttcgggtttc 221
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| |||||||| |||||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 222 caacaaggtttggaatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggc 281
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 282 tctggagggagcagagccttgctggcaagcctgccggcatcttcttcagcactggaaccc 341
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||
Sbjct: 342 agggtggtggccaagagactacaccgttgaccgcgattacccagttgacacaccacggca 401
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 402 tggtgtttgtgcctgtgggctacaccttcggcgccaagctgttcggcatggaccaggttc 461
Query: 596 agggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcg 655
|||||||||||||||| || || ||||||||||| |||||||| |||||||||||||| |
Sbjct: 462 agggtggcagcccctatggtgctggcacgttcgctgccgacggctcgaggtggccgagtg 521
Query: 656 aggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagc 715
|||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 522 aggtggagctcgagcacgcctttcaccaggggaagtacttcgcaggcatcgccaagaagc 581
Query: 716 tcaagggctctgcttgatctgcacatacccctctgtcagatatc-----atatttacaga 770
||||||| |||||||||||||||||||||| || ||||||| | | |||||||||
Sbjct: 582 tcaagggttctgcttgatctgcacatacccttc--tcagataccgtaaaacatttacaga 639
Query: 771 ttcgtcatacccgtcaatagattggtctgt 800
|||||||||||| ||||||||| |||||||
Sbjct: 640 ttcgtcatacccatcaatagatcggtctgt 669
>gb|BE361774.1|BE361774 DG1_82_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 573
Score = 710 bits (358), Expect = 0.0
Identities = 468/505 (92%)
Strand = Plus / Plus
Query: 94 ggtcacaggagctccgagacctctccaatggcggttaagatctacgttgtgtactattcc 153
|||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| |||
Sbjct: 69 ggtcacaggagctccgagccctctccaatggcggtcaaggtctacgtcgtgtactactcc 128
Query: 154 atgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaa 213
| |||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct: 129 acgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctcatctattgaa 188
Query: 214 ggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgcttggaaag 273
|||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 189 ggtgttgaggctaaaatatggcaggtccctgaaactctccctgaggaagtgcttggaaag 248
Query: 274 atgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggct 333
|||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 249 atgggcgcaccccctaagcctgatgtgccagtcatcacaccgcaagaacttgcagaagct 308
Query: 334 gacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcg 393
|| || |||||||| |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct: 309 gatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgcaaatgaaggcg 368
Query: 394 ttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgccggc 453
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 369 ttcttcgatgctactggtgggctctggagggagcagagccttgctggcaagcctgccggc 428
Query: 454 atgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacggcgatt 513
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 429 atcttcttcagcactggaacccagggtggtggccaagagactacaccgttgaccgcgatt 488
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaag 573
|||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 489 acccagttgacacaccacggcatggtgtttgtgcctgtgggctacaccttcngcgccaag 548
Query: 574 ctgttcggcatggaccaggtccagg 598
|||||||||||||||||||| ||||
Sbjct: 549 ctgttcggcatggaccaggttcagg 573
>gb|BG048203.1|BG048203 OV1_28_H12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 706 bits (356), Expect = 0.0
Identities = 496/542 (91%), Gaps = 7/542 (1%)
Strand = Plus / Plus
Query: 264 gcttggaaagatgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaact 323
|||||||||||||||||| |||| |||||| || |||||||||||||||||||| |||||
Sbjct: 1 gcttggaaagatgggcgcaccccntaagcctgatgtgccagtcatcacaccgcaagaact 60
Query: 324 tgcagaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctca 383
|||||| ||||| || |||||||| |||||||| |||||||| |||||||||||||| ||
Sbjct: 61 tgcagaagctgatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgca 120
Query: 384 gatgaaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaa 443
|||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 121 aatgaaggcgttcttcgatgctactggtgggctctggagggagcagagccttgctggcaa 180
Query: 444 gcctgccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgct 503
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 gcctgccggcatcttcttcagcactggaacccagggtggtggccaagagactacaccgtt 240
Query: 504 gacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacctt 563
||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 gaccgcgattacccagttgacacaccacggcatggtgtttgtgcctgtgggctacacctt 300
Query: 564 cggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcac 623
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct: 301 cggcgccaagctgttcggcatggaccaggttcagggtggcagcccctatggtgctggcac 360
Query: 624 gttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccacca 683
|||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 361 gttcgctgccgacggctcgaggtggccgagtgaggtggagctcgagcacgcctttcacca 420
Query: 684 ggggaaatacttcgcgggcatcgccaagaagctcaagggctctgcttgatctgcacatac 743
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 421 ggggaagtacttcgcaggcatcgccaagaagctcaagggttctgcttgatctgcacatac 480
Query: 744 ccctctgtcagatatc-----atatttacagattcgtcatacccgtcaatagattggtct 798
|| || ||||||| | | ||||||||||||||||||||| ||||||||| |||||
Sbjct: 481 ccttc--tcagataccgtaaaacatttacagattcgtcatacccatcaatagatcggtct 538
Query: 799 gt 800
||
Sbjct: 539 gt 540
>gb|CD428670.1|CD428670 ETH1_33_C11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_33_C11_A002 5', mRNA sequence
Length = 615
Score = 704 bits (355), Expect = 0.0
Identities = 479/519 (92%), Gaps = 1/519 (0%)
Strand = Plus / Plus
Query: 94 ggtcacaggagctccgagacctc-tccaatggcggttaagatctacgttgtgtactattc 152
|||||||||||||||||| |||| |||||||||||| ||| ||||||| |||||||| ||
Sbjct: 85 ggtcacaggagctccgagccctcatccaatggcggtcaaggtctacgtcgtgtactactc 144
Query: 153 catgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttga 212
|| |||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 145 cacgtatggacatgttggcaaactagctggagagatcaagaaaggtgcctcatctattga 204
Query: 213 aggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgcttggaaa 272
||||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct: 205 aggtgttgaggctaaaatatggcaggtccctgaaactctccctgaggaagtgcttggaaa 264
Query: 273 gatgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggc 332
||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct: 265 gatgggcgcaccccctaagcctgatgtgccagtcatcacaccgcaagaacttgcagaagc 324
Query: 333 tgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggc 392
||| || |||||||| |||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 325 tgatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgcaaatgaaggc 384
Query: 393 gttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgccgg 452
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 gttcttcgatgctactggtgggctctggagggagcagagccttgctggcaagcctgccgg 444
Query: 453 catgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacggcgat 512
||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 445 catcttcttcagcactggaacccagggtggtggccaagagactacaccattgaccgcgat 504
Query: 513 tacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaa 572
||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 505 tacccagttgacacaccacggcatggtgtttgtgcctgtgggctacaccttcggcgccaa 564
Query: 573 gctgttcggcatggaccaggtccagggtggcagccccta 611
||||||||||||||||||||| || ||||||||||||||
Sbjct: 565 gctgttcggcatggaccaggttcatggtggcagccccta 603
>gb|BG047885.1|BG047885 OV1_28_H12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 694 bits (350), Expect = 0.0
Identities = 455/490 (92%)
Strand = Plus / Plus
Query: 94 ggtcacaggagctccgagacctctccaatggcggttaagatctacgttgtgtactattcc 153
|||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| |||
Sbjct: 59 ggtcacaggagctccgagccctctccaatggcggtcaaggtctacgtcgtgtactactcc 118
Query: 154 atgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaa 213
| |||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct: 119 acgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctcatctattgaa 178
Query: 214 ggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgcttggaaag 273
|||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 179 ggtgttgaggctaaaatatggcaggtccctgaaactctccctgaggaagtgcttggaaag 238
Query: 274 atgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggct 333
|||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 239 atgggcgcaccccctaagcctgatgtgccagtcatcacaccgcaagaacttgcagaagct 298
Query: 334 gacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcg 393
|| || |||||||| |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct: 299 gatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgcaaatgaaggcg 358
Query: 394 ttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgccggc 453
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 359 ttcttcgatgctactggtgggctctggagggagcagagccttgctggcaagcctgccggc 418
Query: 454 atgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacggcgatt 513
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 419 atcttcttcagcactggaacccagggtggtggccaagagactacaccgttgaccgcgatt 478
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaag 573
|||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 479 acccagttgacacaccacggcatggtgtttgtgcctgtgggctacaccttcggcgccaag 538
Query: 574 ctgttcggca 583
||||||||||
Sbjct: 539 ctgttcggca 548
>gb|BF317980.1|BF317980 OV1_10_C09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 692 bits (349), Expect = 0.0
Identities = 454/489 (92%)
Strand = Plus / Plus
Query: 94 ggtcacaggagctccgagacctctccaatggcggttaagatctacgttgtgtactattcc 153
|||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| |||
Sbjct: 59 ggtcacaggagctccgagccctctccaatggcggtcaaggtctacgtcgtgtactactcc 118
Query: 154 atgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaa 213
| |||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct: 119 acgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctcatctattgaa 178
Query: 214 ggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgcttggaaag 273
|||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 179 ggtgttgaggctaaaatatggcaggtccctgaaactctccctgaggaagtgcttggaaag 238
Query: 274 atgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggct 333
|||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 239 atgggcgcaccccctaagcctgatgtgccagtcatcacaccgcaagaacttgcagaagct 298
Query: 334 gacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcg 393
|| || |||||||| |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct: 299 gatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgcaaatgaaggcg 358
Query: 394 ttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgccggc 453
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 359 ttcttcgatgctactggtgggctctggagggagcagagccttgctggcaagcctgccggc 418
Query: 454 atgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacggcgatt 513
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 419 atcttcttcagcactggaacccagggtggtggccaagagactacaccgttgaccgcgatt 478
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaag 573
|||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 479 acccagttgacacaccacggcatggtgtttgtgcctgtgggctacaccttcggcgccaag 538
Query: 574 ctgttcggc 582
|||||||||
Sbjct: 539 ctgttcggc 547
>gb|BG357818.1|BG357818 OV2_30_F08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 563
Score = 670 bits (338), Expect = 0.0
Identities = 457/494 (92%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 94 ggtcacaggagctccgagacctctccaatggcggttaagatctacgttgtgtactattcc 153
|||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| |||
Sbjct: 71 ggtcacaggagctccgagccctctccaatggcggtcaaggtctacgtcgtgtactactcc 130
Query: 154 atgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaa 213
| |||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct: 131 acgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctcatctattgaa 190
Query: 214 ggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgcttggaaag 273
|||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 191 ggtgttgaggctaaaatatggcaggtccctgaaactctccctgaggaagtgcttggaaag 250
Query: 274 atgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggct 333
|||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 251 atgggcgcaccccctaagcctgatgtgccagtcatcacaccgcaagaacttgcagaagct 310
Query: 334 gacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcg 393
|| || |||||||| |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct: 311 gatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgcaaatgaaggcg 370
Query: 394 ttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgccggc 453
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 371 ttcttcgatgctactggtgggctctggagggagcagagccttgctggcaagcctgccggc 430
Query: 454 atgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacggcgatt 513
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 431 atcttcttcagcactggaacccagggtggtggccaagagactacaccgttgaccgcgatt 490
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggcta-caccttcggcgccaa 572
|||||| |||| ||||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct: 491 acccagttgacacaccacggcatggtgtttgtgcctgtgggctaccaccttc-gcgccaa 549
Query: 573 gctgttcggcatgg 586
||||||||||||||
Sbjct: 550 gctgttcggcatgg 563
>gb|BE361835.1|BE361835 DG1_82_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 579
Score = 668 bits (337), Expect = 0.0
Identities = 466/508 (91%), Gaps = 7/508 (1%)
Strand = Plus / Plus
Query: 298 gtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttccg 357
|||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||
Sbjct: 7 gtgccagtcatcacaccgcaagaacttgcagaagctgatggaatcctcttcgggtttcca 66
Query: 358 acaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctc 417
|||||||| |||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 67 acaaggtttggaatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggctc 126
Query: 418 tggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccag 477
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 127 tggagggagcagagccttgctggcaagcctgccggcatcttcttcagcactggaacccag 186
Query: 478 ggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatg 537
|||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||
Sbjct: 187 ggtggtggccaagagactacaccgttgaccgcgattacccagttgacacaccacggcatg 246
Query: 538 gtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccag 597
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 247 gtgtttgtgcctgtgggctacaccttcggcgccaagctgttcggcatggaccaggttcag 306
Query: 598 ggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgag 657
|||||||||||||| || || ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 307 ggtggcagcccctatggtgctggcacgttcgctgccgacggctcgaggtggccgagtgag 366
Query: 658 gtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctc 717
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 367 gtggagctcgagcacgcctttcaccaggggaagtacttcgcaggcatcgccaagaagctc 426
Query: 718 aagggctctgcttgatctgcacatacccctctgtcagatatc-----atatttacagatt 772
||||| |||||||||||||||||||||| || ||||||| | | |||||||||||
Sbjct: 427 aagggttctgcttgatctgcacatacccttc--tcagataccgtaaaacatttacagatt 484
Query: 773 cgtcatacccgtcaatagattggtctgt 800
|||||||||| ||||||||| |||||||
Sbjct: 485 cgtcatacccatcaatagatcggtctgt 512
>gb|BG357498.1|BG357498 OV2_30_F08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 668 bits (337), Expect = 0.0
Identities = 466/508 (91%), Gaps = 7/508 (1%)
Strand = Plus / Plus
Query: 298 gtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttccg 357
|||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||
Sbjct: 6 gtgccagtcatcacaccgcaagaacttgcagaagctgatggaatcctcttcgggtttcca 65
Query: 358 acaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctc 417
|||||||| |||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 66 acaaggtttggaatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggctc 125
Query: 418 tggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccag 477
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 126 tggagggagcagagccttgctggcaagcctgccggcatcttcttcagcactggaacccag 185
Query: 478 ggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatg 537
|||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||
Sbjct: 186 ggtggtggccaagagactacaccgttgaccgcgattacccagttgacacaccacggcatg 245
Query: 538 gtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccag 597
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 246 gtgtttgtgcctgtgggctacaccttcggcgccaagctgttcggcatggaccaggttcag 305
Query: 598 ggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgag 657
|||||||||||||| || || ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 306 ggtggcagcccctatggtgctggcacgttcgctgccgacggctcgaggtggccgagtgag 365
Query: 658 gtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctc 717
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 366 gtggagctcgagcacgcctttcaccaggggaagtacttcgcaggcatcgccaagaagctc 425
Query: 718 aagggctctgcttgatctgcacatacccctctgtcagatatc-----atatttacagatt 772
||||| |||||||||||||||||||||| || ||||||| | | |||||||||||
Sbjct: 426 aagggttctgcttgatctgcacatacccttc--tcagataccgtaaaacatttacagatt 483
Query: 773 cgtcatacccgtcaatagattggtctgt 800
|||||||||| ||||||||| |||||||
Sbjct: 484 cgtcatacccatcaatagatcggtctgt 511
>gb|CD225729.1|CD225729 CCC1_41_H03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_H03_A007 3', mRNA sequence
Length = 649
Score = 668 bits (337), Expect = 0.0
Identities = 466/508 (91%), Gaps = 7/508 (1%)
Strand = Plus / Plus
Query: 298 gtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttccg 357
|||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||
Sbjct: 4 gtgccagtcatcacaccgcaagaacttgcagaagctgatggaatcctcttcgggtttcca 63
Query: 358 acaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctc 417
|||||||| |||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 64 acaaggtttggaatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggctc 123
Query: 418 tggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccag 477
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 124 tggagggagcagagccttgctggcaagcctgccggcatcttcttcagcactggaacccag 183
Query: 478 ggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatg 537
|||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||
Sbjct: 184 ggtggtggccaagagactacaccgttgaccgcgattacccagttgacacaccacggcatg 243
Query: 538 gtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccag 597
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 244 gtgtttgtgcctgtgggctacaccttcggcgccaagctgttcggcatggaccaggttcag 303
Query: 598 ggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgag 657
|||||||||||||| || || ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 304 ggtggcagcccctatggtgctggcacgttcgctgccgacggctcgaggtggccgagtgag 363
Query: 658 gtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctc 717
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 364 gtggagctcgagcacgcctttcaccaggggaagtacttcgcaggcatcgccaagaagctc 423
Query: 718 aagggctctgcttgatctgcacatacccctctgtcagatatc-----atatttacagatt 772
||||| |||||||||||||||||||||| || ||||||| | | |||||||||||
Sbjct: 424 aagggttctgcttgatctgcacatacccttc--tcagataccgtaaaacatttacagatt 481
Query: 773 cgtcatacccgtcaatagattggtctgt 800
|||||||||| ||||||||| |||||||
Sbjct: 482 cgtcatacccatcaatagatcggtctgt 509
Score = 75.8 bits (38), Expect = 7e-012
Identities = 64/70 (91%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 866 tgctctggtgacttggtttgtaatttggagttggactatcgttgtttctgccgcataaat 925
|||||||||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||
Sbjct: 556 tgctctggtgacttggtt-gtaatctggagttggactattgt-gtttctgtcgcttaaat 613
Query: 926 ttcgatgatt 935
||||||||||
Sbjct: 614 ttcgatgatt 623
>gb|CN125551.1|CN125551 RHOH1_11_F09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_F09_A002 5', mRNA sequence
Length = 546
Score = 654 bits (330), Expect = 0.0
Identities = 435/470 (92%)
Strand = Plus / Plus
Query: 94 ggtcacaggagctccgagacctctccaatggcggttaagatctacgttgtgtactattcc 153
|||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| |||
Sbjct: 77 ggtcacaggagctccgagccctctccaatggcggtcaaggtctacgtcgtgtactactcc 136
Query: 154 atgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaa 213
| |||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct: 137 acgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctcatctattgaa 196
Query: 214 ggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgcttggaaag 273
|||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 197 ggtgttgaggctaaaatatggcaggtccctgaaactctccctgaggaagtgcttggaaag 256
Query: 274 atgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggct 333
|||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 257 atgggcgcaccccctaagcctgatgtgccagtcatcacaccgcatgaacttgcagaagct 316
Query: 334 gacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcg 393
|| || |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 317 gatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgcagatgaaggcg 376
Query: 394 ttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgccggc 453
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 377 ttcttcgatgctactggtgggctctggagggagcagagccttgctggcaagcctgccggc 436
Query: 454 atgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacggcgatt 513
|| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct: 437 atcttcttcagcactggaacccacggtggtggccaagagactacaccgttgaccgcgatt 496
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacctt 563
|||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 acccagttgacacaccacggcatggtgtttgtgcctgtgggctacacctt 546
>gb|BF317840.1|BF317840 OV1_10_C09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 497
Score = 583 bits (294), Expect = e-164
Identities = 402/437 (91%), Gaps = 7/437 (1%)
Strand = Plus / Plus
Query: 369 aatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctggagggagca 428
|||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 aatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggctctggagggagca 60
Query: 429 gagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtggtggcca 488
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 gagccttgctggcaagcctgccggcatcttcttcagcactggaacccagggtggtggcca 120
Query: 489 agagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgtttgtgcc 548
||||||||||||| |||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct: 121 agagactacaccgttgaccgcgattacccagttgacacaccacggcatggtgtttgtgcc 180
Query: 549 cgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccagggtggcagccc 608
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 181 tgtgggctacaccttcggcgccaagctgttcggcatggaccaggttcagggtggcagccc 240
Query: 609 ctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctgga 668
||| || || ||||||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 241 ctatggtgctggcacgttcgctgccgacggctcgaggtggccgagtgaggtggagctcga 300
Query: 669 gcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctcaagggctctgc 728
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 301 gcacgcctttcaccaggggaagtacttcgcaggcatcgccaagaagctcaagggttctgc 360
Query: 729 ttgatctgcacatacccctctgtcagatatc-----atatttacagattcgtcatacccg 783
||||||||||||||||| || ||||||| | | |||||||||||||||||||||
Sbjct: 361 ttgatctgcacatacccttc--tcagataccgtaaaacatttacagattcgtcataccca 418
Query: 784 tcaatagattggtctgt 800
||||||||| |||||||
Sbjct: 419 tcaatagatcggtctgt 435
>gb|BG412013.1|BG412013 OV2_40_H11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 575 bits (290), Expect = e-162
Identities = 401/437 (91%), Gaps = 7/437 (1%)
Strand = Plus / Plus
Query: 369 aatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctggagggagca 428
|||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 aatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggctctggagggagca 60
Query: 429 gagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtggtggcca 488
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 61 gagccttgctggcaagcctgccggcatcttcttcagcactggaacccagggtggtgccca 120
Query: 489 agagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgtttgtgcc 548
||||||||||||| |||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct: 121 agagactacaccgttgaccgcgattacccagttgacacaccacggcatggtgtttgtgcc 180
Query: 549 cgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccagggtggcagccc 608
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 181 tgtgggctacaccttcggcgccaagctgttcggcatggaccaggttcagggtggcagccc 240
Query: 609 ctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctgga 668
||| || || ||||||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 241 ctatggtgctggcacgttcgctgccgacggctcgaggtggccgagtgaggtggagctcga 300
Query: 669 gcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctcaagggctctgc 728
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 301 gcacgcctttcaccaggggaagtacttcgcaggcatcgccaagaagctcaagggttctgc 360
Query: 729 ttgatctgcacatacccctctgtcagatatc-----atatttacagattcgtcatacccg 783
||||||||||||||||| || ||||||| | | |||||||||||||||||||||
Sbjct: 361 ttgatctgcacatacccttc--tcagataccgtaaaacatttacagattcgtcataccca 418
Query: 784 tcaatagattggtctgt 800
||||||||| |||||||
Sbjct: 419 tcaatagatcggtctgt 435
>gb|BM325874.1|BM325874 PIC1_53_H06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 460
Score = 541 bits (273), Expect = e-152
Identities = 360/389 (92%)
Strand = Plus / Plus
Query: 94 ggtcacaggagctccgagacctctccaatggcggttaagatctacgttgtgtactattcc 153
|||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| |||
Sbjct: 72 ggtcacaggagctccgagccctctccaatggcggtcaaggtctacgtcgtgtactactcc 131
Query: 154 atgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaa 213
| |||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct: 132 acgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctcatctattgaa 191
Query: 214 ggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgcttggaaag 273
|||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 192 ggtgttgaggctaaaatatggcaggtccctgaaactctccctgaggaagtgcttggaaag 251
Query: 274 atgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagaggct 333
|||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 252 atgggcgcaccccctaagcctgatgtgccagtcatcacaccgcatgaacttgcagaagct 311
Query: 334 gacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcg 393
|| || |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 312 gatggaatcctcttcgggtttccaacaaggtttggaatgatggcagcgcagatgaaggcg 371
Query: 394 ttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgccggc 453
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 372 ttcttcgatgctactggtgggctctggagggagcagagccttgctggcaagcctgccggc 431
Query: 454 atgttcttcagcactggaacccagggtgg 482
|| ||||||||||||||||||||||||||
Sbjct: 432 atcttcttcagcactggaacccagggtgg 460
>gb|BM330587.1|BM330587 PIC1_53_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 508
Score = 486 bits (245), Expect = e-135
Identities = 353/388 (90%), Gaps = 7/388 (1%)
Strand = Plus / Plus
Query: 418 tggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccag 477
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tggagggagcagagccttgctggcaagcctgccggcatcttcttcagcactggaacccag 60
Query: 478 ggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatg 537
|||||||||||||||||||||||| |||| |||||||||||| |||| |||| |||||||
Sbjct: 61 ggtggtggccaagagactacaccgttgaccgcgattacccagttgacacaccgcggcatg 120
Query: 538 gtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccag 597
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 121 gtgtttgtgcctgtgggctacaccttaggcgccaagctgttcggcatggaccaggttcag 180
Query: 598 ggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgag 657
|||||||||||||| || || ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 181 ggtggcagcccctatggtgctggcacgttcgctgccgacggctcgaggtggccgagtgag 240
Query: 658 gtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctc 717
|||||||| ||||||||||| | ||||||||| |||||||| ||||||||||||||||||
Sbjct: 241 gtggagctcgagcacgcctttctccaggggaagtacttcgcaggcatcgccaagaagctc 300
Query: 718 aagggctctgcttgatctgcacatacccctctgtcagatatc-----atatttacagatt 772
||||| |||||||||||||||||||||| || ||||||| | | |||||||||||
Sbjct: 301 aagggttctgcttgatctgcacatacccttc--tcagataccgtaaaacatttacagatt 358
Query: 773 cgtcatacccgtcaatagattggtctgt 800
||||||||| ||||||||| |||||||
Sbjct: 359 ggtcatacccatcaatagatcggtctgt 386
Score = 65.9 bits (33), Expect = 6e-009
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 866 tgctctggtgacttggtttgtaatttggagttggactatcgttgtttctgccgcataaat 925
|||||||||||||||||| ||||| |||||||||||||| | |||||||| ||| |||||
Sbjct: 433 tgctctggtgacttggtt-gtaatctggagttggactattg-tgtttctgtcgcttaaat 490
Query: 926 ttcga 930
|||||
Sbjct: 491 ttcga 495
>gb|BM330586.1|BM330586 PIC1_53_H06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 461
Score = 434 bits (219), Expect = e-120
Identities = 309/338 (91%), Gaps = 7/338 (2%)
Strand = Plus / Plus
Query: 468 tggaacccagggtggtggccaagagactacaccgctgacggcgattacccagctgacgca 527
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||
Sbjct: 3 tggaacccagggtggtggccaagagactacaccgttgaccgcgattacccagttgacaca 62
Query: 528 ccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatgga 587
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ccacggcatggtgtttgtgcctgtgggctacaccttcggcgccaagctgttcggcatgga 122
Query: 588 ccaggtccagggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtg 647
|||||| ||||||||||||||||| || || ||||||||||| |||||||| ||||||||
Sbjct: 123 ccaggttcagggtggcagcccctatggtgctggcacgttcgctgccgacggctcgaggtg 182
Query: 648 gccgagcgaggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgc 707
|||||| ||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 183 gccgagtgaggtggagctcgagcacgcctttcaccaggggaagtacttcgcaggcatcgc 242
Query: 708 caagaagctcaagggctctgcttgatctgcacatacccctctgtcagatatc-----ata 762
||||||||||||||| |||||||||||||||||||||| || ||||||| | | |
Sbjct: 243 caagaagctcaagggttctgcttgatctgcacatacccttc--tcagataccgtaaaaca 300
Query: 763 tttacagattcgtcatacccgtcaatagattggtctgt 800
|||||||||||||||||||| ||||||||| |||||||
Sbjct: 301 tttacagattcgtcatacccatcaatagatcggtctgt 338
Score = 65.9 bits (33), Expect = 6e-009
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 866 tgctctggtgacttggtttgtaatttggagttggactatcgttgtttctgccgcataaat 925
|||||||||||||||||| ||||| |||||||||||||| | |||||||| ||| |||||
Sbjct: 385 tgctctggtgacttggtt-gtaatctggagttggactattg-tgtttctgtcgcttaaat 442
Query: 926 ttcga 930
|||||
Sbjct: 443 ttcga 447
>gb|CN129474.1|CN129474 RHOH1_35_D06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_D06_A002 5', mRNA sequence
Length = 799
Score = 404 bits (204), Expect = e-111
Identities = 507/608 (83%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 124 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 183
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 184 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 243
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 244 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 303
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 304 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 363
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 364 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 423
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 424 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 483
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || ||||| ||||| ||||||||||||||| | || ||||||||||||||||| |
Sbjct: 484 agggcggcggccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacggga 543
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||||||| ||||| ||||| ||||| ||||||||||| | || | |||||| || |
Sbjct: 544 tggtgttcgtgccggtggggtacacgttcggcgccaaaatatttgacatggagagcgtgc 603
Query: 596 agggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcg 655
| || ||||| | |||||||| ||||||||||||| ||||||||| ||||||||| |
Sbjct: 604 acggcggcagtgcgtacggcgcgggcacgttcgccggggacgggtcgcggtggccgacgg 663
Query: 656 aggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagc 715
|| ||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||
Sbjct: 664 agttggagctggagcacgcctttcaccagggcaagtacttcgccggcatcgccaagaagc 723
Query: 716 tcaagggc 723
||||||||
Sbjct: 724 tcaagggc 731
>gb|CF433699.1|CF433699 NIT1_28_G06.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_G06_A002 5', mRNA sequence
Length = 752
Score = 389 bits (196), Expect = e-106
Identities = 502/604 (83%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 101 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 160
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 161 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 220
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 221 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 280
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || ||||||| |||||||
Sbjct: 281 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcgtcctcttcgggtttc 340
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 341 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 400
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 401 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 460
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || ||||| ||||| ||||||||||||||| | || ||||||||||||||||| |
Sbjct: 461 agggcggcggccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacggga 520
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||||||| ||||| ||||| ||||| ||||||||||| | || | |||||| || |
Sbjct: 521 tggtgttcgtgccggtggggtacacgttcggcgccaaaatatttgacatggagagcgtgc 580
Query: 596 agggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcg 655
| || ||||| | |||||||| ||||||||||||| ||||||||| ||||||||| |
Sbjct: 581 acggcggcagtgcgtacggcgcgggcacgttcgccggggacgggtcgcggtggccgacgg 640
Query: 656 aggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagc 715
|| ||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||
Sbjct: 641 agttggagctggagcacgcctttcaccagggcaagtacttcgccggcatcgccaagaagc 700
Query: 716 tcaa 719
||||
Sbjct: 701 tcaa 704
>gb|CW052317.1|CW052317 104_292_10515512_115_30287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515512, DNA
sequence
Length = 681
Score = 379 bits (191), Expect = e-103
Identities = 247/266 (92%)
Strand = Plus / Plus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 392 aggtccctgaaactctccctgaggaagtgcttggaaagatgggcgcaccccctaagcctg 451
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
| |||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||||
Sbjct: 452 atgtgccagtcatcacaccgcaagaacttgcagaagctgatggaatcctcttcgggtttc 511
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| |||||||| |||||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 512 caacaaggtttggaatgatggcagcgcanatgaaggcgttcttcgatgctactggtgggc 571
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 572 tctggagggagcagagccttgctggcaagcctgccggcatcttcttcagcactggaaccc 631
Query: 476 agggtggtggccaagagactacaccg 501
||||||||||||||||||||||||||
Sbjct: 632 agggtggtggccaagagactacaccg 657
Score = 135 bits (68), Expect = 8e-030
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 144 gtactattccatgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgcctt 203
|||||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 153 gtactactccacgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctc 212
Query: 204 atctgttgaaggtgttgaggctaagatatggcaggt 239
|||| ||||||||||||||||||| |||||||||||
Sbjct: 213 atctattgaaggtgttgaggctaaaatatggcaggt 248
>gb|CL196725.1|CL196725 104_423_10943246_114_32326_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943246, DNA
sequence
Length = 718
Score = 377 bits (190), Expect = e-102
Identities = 247/266 (92%)
Strand = Plus / Plus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 223 aggtccctgaaactctccctgaggaagtgcttggaaagatgggcgcaccccctaagcctg 282
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
| |||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||||
Sbjct: 283 atgtgccagtcatcacaccgcaagaacttgcagaagctgatggaatcctcttcgggtttc 342
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| |||||||| |||||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 343 caacaaggtttggaatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggc 402
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 403 tctggagggagcagagccttgctggcaagcctgccggcatcttcttcagcactggaaccc 462
Query: 476 agggtggtggccaagagactacaccg 501
||||||||||||||||||||||||||
Sbjct: 463 agggtggtggccaagagactacaccg 488
Score = 188 bits (95), Expect = 6e-046
Identities = 119/127 (93%)
Strand = Plus / Plus
Query: 503 tgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacct 562
|||| |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 589 tgaccgcgattacccagttgacacaccacggcatggtgtttgtgcctgtgggctacacct 648
Query: 563 tcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggca 622
||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||
Sbjct: 649 tcggcgccaagctgttcggcatggaccaggttcagggtggcagcccctatggtgctggca 708
Query: 623 cgttcgc 629
|||||||
Sbjct: 709 cgttcgc 715
Score = 121 bits (61), Expect = 1e-025
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 163 catgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgag 222
|||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||
Sbjct: 3 catgttggcaaactagctgaagagatcaagaaaggtgcctcatctattgaaggtgttgag 62
Query: 223 gctaagatatggcaggt 239
||||| |||||||||||
Sbjct: 63 gctaaaatatggcaggt 79
>gb|CW052315.1|CW052315 104_292_10515512_114_30286 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515512, DNA
sequence
Length = 610
Score = 373 bits (188), Expect = e-101
Identities = 275/303 (90%), Gaps = 7/303 (2%)
Strand = Plus / Minus
Query: 503 tgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacct 562
|||| |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 371 tgaccgcgattacccagttgacacaccacggcatggtgtttgtgcctgtgggctacacct 312
Query: 563 tcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggca 622
||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||
Sbjct: 311 tcggcgccaagctgttcggcatggaccaggttcagggtggcagcccctatggtgctggca 252
Query: 623 cgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccacc 682
||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 251 cgttcgctgccgacggctcgaggtggccgagtgaggtggagctcgagcacgcctttcacc 192
Query: 683 aggggaaatacttcgcgggcatcgccaagaagctcaagggctctgcttgatctgcacata 742
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 191 aggggaagtacttcgcaggcatcgccaagaagctcaagggttctgcttgatctgcacata 132
Query: 743 cccctctgtcagatatc-----atatttacagattcgtcatacccgtcaatagattggtc 797
||| || ||||||| | | ||||||||||||||||||||| ||||||||| ||||
Sbjct: 131 cccttc--tcagataccgtaaaacatttacagattcgtcatacccatcaatagatcggtc 74
Query: 798 tgt 800
|||
Sbjct: 73 tgt 71
Score = 220 bits (111), Expect = 2e-055
Identities = 129/135 (95%)
Strand = Plus / Minus
Query: 367 ggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctggagggag 426
|||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 606 ggaatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggctctggagggag 547
Query: 427 cagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtggtggc 486
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 546 cagagccttgctggcaagcctgccggcatcttcttcagcactggaacccagggtggtggc 487
Query: 487 caagagactacaccg 501
|||||||||||||||
Sbjct: 486 caagagactacaccg 472
>gb|CW243361.1|CW243361 104_703_11219979_116_37571_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219979, DNA
sequence
Length = 676
Score = 373 bits (188), Expect = e-101
Identities = 275/303 (90%), Gaps = 7/303 (2%)
Strand = Plus / Minus
Query: 503 tgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacct 562
|||| |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 608 tgaccgcgattacccagttgacacaccacggcatggtgtttgtgcctgtgggctacacct 549
Query: 563 tcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggca 622
||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||
Sbjct: 548 tcggcgccaagctgttcggcatggaccaggttcagggtggcagcccctatggtgctggca 489
Query: 623 cgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccacc 682
||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 488 cgttcgctgccgacggctcgaggtggccgagtgaggtggagctcgagcacgcctttcacc 429
Query: 683 aggggaaatacttcgcgggcatcgccaagaagctcaagggctctgcttgatctgcacata 742
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 428 aggggaagtacttcgcaggcatcgccaagaagctcaagggttctgcttgatctgcacata 369
Query: 743 cccctctgtcagatatc-----atatttacagattcgtcatacccgtcaatagattggtc 797
||| || ||||||| | | ||||||||||||||||||||| ||||||||| ||||
Sbjct: 368 cccttc--tcagataccgtaaaacatttacagattcgtcatacccatcaatagatcggtc 311
Query: 798 tgt 800
|||
Sbjct: 310 tgt 308
Score = 75.8 bits (38), Expect = 7e-012
Identities = 64/70 (91%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 866 tgctctggtgacttggtttgtaatttggagttggactatcgttgtttctgccgcataaat 925
|||||||||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||
Sbjct: 261 tgctctggtgacttggtt-gtaatctggagttggactattgt-gtttctgtcgcttaaat 204
Query: 926 ttcgatgatt 935
||||||||||
Sbjct: 203 ttcgatgatt 194
>gb|CF488389.1|CF488389 POL1_49_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_D06_A002 5', mRNA sequence
Length = 672
Score = 361 bits (182), Expect = 8e-098
Identities = 482/582 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 91 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 150
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 151 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 210
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 211 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 270
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 271 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 330
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 331 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 390
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 391 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 450
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || ||||| ||||| ||||||||||||||| | || ||||||||||||||||| |
Sbjct: 451 agggcggcggccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacggga 510
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||||||| ||||| ||||| ||||| ||||||||||| | || | |||||| || |
Sbjct: 511 tggtgttcgtgccggtggggtacacgttcggcgccaaaatatttgacatggagagcgtgc 570
Query: 596 agggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcg 655
| || ||||| | |||||||| ||||||||||||| ||||||||| ||||||||| |
Sbjct: 571 acggcggcagtgcgtacggcgcgggcacgttcgccggggacgggtcgcggtggccgacgg 630
Query: 656 aggtggagctggagcacgccttccaccaggggaaatacttcg 697
|| ||||||||||||||||||| |||||||| || |||||||
Sbjct: 631 agttggagctggagcacgcctttcaccagggcaagtacttcg 672
>gb|CF769697.1|CF769697 DSBF1_3_F04.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_F04_A010 5', mRNA sequence
Length = 466
Score = 357 bits (180), Expect = 1e-096
Identities = 273/303 (90%), Gaps = 7/303 (2%)
Strand = Plus / Minus
Query: 503 tgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacct 562
|||| |||||||||||| |||| ||||||||||||||||| || || |||||||||||||
Sbjct: 463 tgaccgcgattacccagttgacacaccacggcatggtgttcgtccctgtgggctacacct 404
Query: 563 tcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggca 622
||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||
Sbjct: 403 tcggcgccaagctgttcggcatggaccaggttcagggtggcagcccctatggtgctggca 344
Query: 623 cgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccacc 682
||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 343 cgttcgctgccgacggctcgaggtggccgagtgaggtggagctcgagcacgcctttcacc 284
Query: 683 aggggaaatacttcgcgggcatcgccaagaagctcaagggctctgcttgatctgcacata 742
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 283 aggggaagtacttcgcaggcatcgccaagaagctcaagggttctgcttgatctgcacata 224
Query: 743 cccctctgtcagatatc-----atatttacagattcgtcatacccgtcaatagattggtc 797
||| || ||||||| | | ||||||||||||||||||||| ||||||||| ||||
Sbjct: 223 cccttc--tcagataccgtaaaacatttacagattcgtcatacccatcaatagatcggtc 166
Query: 798 tgt 800
|||
Sbjct: 165 tgt 163
Score = 67.9 bits (34), Expect = 2e-009
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 866 tgctctggtgacttggtttgtaatttggagttggactatcgttgtttctgccgcataaat 925
|||||||||||||||| ||||||| |||||||||||||| | |||||||| ||| |||||
Sbjct: 116 tgctctggtgacttgg-ttgtaatctggagttggactattg-tgtttctgtcgcttaaat 59
Query: 926 ttcgatgatt 935
||||| ||||
Sbjct: 58 ttcgacgatt 49
>gb|CN136882.1|CN136882 OX1_53_H01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_53_H01_A002 5', mRNA sequence
Length = 677
Score = 345 bits (174), Expect = 5e-093
Identities = 465/562 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 112 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 171
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 172 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 231
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 232 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 291
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 292 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 351
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 352 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 411
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 412 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 471
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || ||||| ||||| ||||||||||||||| | || ||||||||||||||||| |
Sbjct: 472 agggcggcggccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacggga 531
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||||||| ||||| ||||| ||||| ||||||||||| | || | |||||| || |
Sbjct: 532 tggtgttcgtgccggtggggtacacgttcggcgccaaaatatttgacatggagagcgtgc 591
Query: 596 agggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcg 655
| || ||||| | |||||||| ||||||||||||| ||||||||| ||||||||| |
Sbjct: 592 acggcggcagtgcgtacggcgcgggcacgttcgccggggacgggtcgcggtggccgacgg 651
Query: 656 aggtggagctggagcacgcctt 677
|| |||||||||||||||||||
Sbjct: 652 agttggagctggagcacgcctt 673
>gb|CN129384.1|CN129384 RHOH1_35_D06.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_D06_A002 3', mRNA sequence
Length = 775
Score = 341 bits (172), Expect = 7e-092
Identities = 430/516 (83%)
Strand = Plus / Plus
Query: 208 gttgaaggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagtgctt 267
|||||||| || |||| || |||||||||||||| |||||||| || || || || ||
Sbjct: 5 gttgaaggcgtggaggtcaaaatatggcaggtcccagaaattctatccgaggaggtcctc 64
Query: 268 ggaaagatgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgca 327
|| |||||||| ||||| || ||| ||||||| || ||||||| |||||||| || ||
Sbjct: 65 ggcaagatgggtgcgccacccaagaccgacgtaccgatcatcacgccgcaggagctcgct 124
Query: 328 gaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatg 387
||||| || || |||||||| |||||||| ||| ||||||| |||||||| | ||||||
Sbjct: 125 gaggccgatggcatcctcttcgggtttcccacacggttcggcatgatggcgtcacagatg 184
Query: 388 aaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcct 447
||||| ||||| || |||||||| ||||| ||| ||||||||||||| || ||||||||
Sbjct: 185 aaggccttctttgacgccaccggcgggctgtggcgggagcagagcctggccggcaagccc 244
Query: 448 gccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacg 507
|| ||| | || ||||||||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct: 245 gctggcctttttttcagcactggcacccagggcggcggccaggagaccacaccgctgacg 304
Query: 508 gcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggc 567
||| | || ||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||
Sbjct: 305 gcggtgacgcagctgacgcaccacgggatggtgttcgtgccggtggggtacacgttcggc 364
Query: 568 gccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttc 627
||||| | || | |||||| || || || ||||| | |||||||| |||||||||
Sbjct: 365 gccaaaatatttgacatggagagcgtgcacggcggcagtgcgtacggcgcgggcacgttc 424
Query: 628 gccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccaccagggg 687
|||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 425 gccggggacgggtcgcggtggccgacggagttggagctggagcacgcctttcaccagggc 484
Query: 688 aaatacttcgcgggcatcgccaagaagctcaagggc 723
|| |||||||| ||||||||||||||||||||||||
Sbjct: 485 aagtacttcgccggcatcgccaagaagctcaagggc 520
>gb|CW243362.1|CW243362 104_703_11219979_148_37572_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219979, DNA
sequence
Length = 683
Score = 313 bits (158), Expect = 2e-083
Identities = 215/234 (91%)
Strand = Plus / Plus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 450 aggtccctgaaactctccctgaggaagtgcttggaaagatgggcgcaccccctaagcctg 509
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
| |||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||||
Sbjct: 510 atgtgccagtcatcacaccgcaagaacttgcagaagctgatggaatcctcttcgggtttc 569
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| |||||||| |||||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 570 caacaaggtttggaatgatggcagcgcaaatgaaggcgttcttcgatgctactggtgggc 629
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactg 469
||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 630 tctggagggagcagagccttgctggcaagcctgccggcatcttcttcagcactg 683
Score = 135 bits (68), Expect = 8e-030
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 144 gtactattccatgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgcctt 203
|||||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 211 gtactactccacgtatggacatgttggcaaactagctgaagagatcaagaaaggtgcctc 270
Query: 204 atctgttgaaggtgttgaggctaagatatggcaggt 239
|||| ||||||||||||||||||| |||||||||||
Sbjct: 271 atctattgaaggtgttgaggctaaaatatggcaggt 306
>gb|CF485453.1|CF485453 POL1_31_D05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_D05_A002 5', mRNA sequence
Length = 608
Score = 311 bits (157), Expect = 7e-083
Identities = 382/457 (83%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 133 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 192
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 193 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 252
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 253 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 312
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 313 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 372
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 373 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 432
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 433 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 492
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || ||||| ||||| ||||||||||||||| | || ||||||||||||||||| |
Sbjct: 493 agggcggcggccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacggga 552
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaa 572
||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 553 tggtgttcgtgccggtggggtacacgttcggcgccaa 589
>gb|BE594574.1|BE594574 PI1_34_H06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 309 bits (156), Expect = 3e-082
Identities = 381/456 (83%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 121 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 180
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 181 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 240
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 241 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 300
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 301 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 360
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 361 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 420
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 421 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 480
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || ||||| ||||| ||||||||||||||| | || ||||||||||||||||| |
Sbjct: 481 agggcggcggccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacggga 540
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgcca 571
||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 541 tggtgttcgtgccggtggggtacacgttcggcgcca 576
>gb|CF485141.1|CF485141 POL1_29_E05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_29_E05_A002 5', mRNA sequence
Length = 547
Score = 283 bits (143), Expect = 1e-074
Identities = 356/427 (83%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 120 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 179
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 180 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 239
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 240 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 299
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 300 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 359
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 360 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 419
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 420 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 479
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || ||||| ||||| ||||||||||||||| | || ||||||||||||||||| |
Sbjct: 480 agggcggcggccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacggga 539
Query: 536 tggtgtt 542
|||||||
Sbjct: 540 tggtgtt 546
>gb|CN136795.1|CN136795 OX1_53_H01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_53_H01_A002 3', mRNA sequence
Length = 720
Score = 281 bits (142), Expect = 6e-074
Identities = 349/418 (83%)
Strand = Plus / Plus
Query: 305 tcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttccgacaaggt 364
||||||| |||||||| || || ||||| || || ||||| || |||||||| ||| |||
Sbjct: 15 tcatcacgccgcaggagctcgctgaggccgatggcatcctattcgggtttcccacacggt 74
Query: 365 tcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctggaggg 424
|||| |||||||| | ||||||||||| ||||| || |||||||| ||| | ||| |||
Sbjct: 75 tcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggttgtggcggg 134
Query: 425 agcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtggtg 484
|||||||||| || |||||||| || ||| | |||||||||||||| |||||||| || |
Sbjct: 135 agcagagcctggccggcaagcccgctggcctcttcttcagcactggcacccagggcggcg 194
Query: 485 gccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgtttg 544
|||| ||||| ||||||||||||||| | || ||||||||||||||||| |||||||| |
Sbjct: 195 gccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacgggatggtgttcg 254
Query: 545 tgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccagggtggca 604
|||| ||||| ||||| ||||||||||| | || | |||||| || || || ||||
Sbjct: 255 tgccggtggggtacactttcggcgccaaaatatttgacatggagagcgtgcacggcggca 314
Query: 605 gcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgaggtggagc 664
| | |||||||| ||||||||| ||| ||||||||| ||||||||| ||| ||||||
Sbjct: 315 gtgcgtacggcgcgggcacgttccccggggacgggtcgcggtggccgacggagttggagc 374
Query: 665 tggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctcaaggg 722
|||||||| |||| |||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 375 tggagcacccctttcaccagggcaagtacttcgccggcatcgccaagaagctcaaggg 432
>gb|CW052314.1|CW052314 104_292_10515512_114_30189 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515512, DNA
sequence
Length = 305
Score = 250 bits (126), Expect = 2e-064
Identities = 211/237 (89%), Gaps = 8/237 (3%)
Strand = Plus / Minus
Query: 570 caagctgttcggcatggaccaggtccaggg-tggcagcccctacggcgccggcacgttcg 628
||||||||| |||||||||||||| ||||| |||||||||||| || || ||||||||||
Sbjct: 305 caagctgttgggcatggaccaggttcaggggtggcagcccctatggtgctggcacgttcg 246
Query: 629 ccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccaccagggga 688
| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 245 ctgccgacggctcgaggtggccgagtgaggtggagctcgagcacgcctttcaccagggga 186
Query: 689 aatacttcgcgggcatcgccaagaagctcaagggctctgcttgatctgcacatacccctc 748
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 185 agtacttcgcaggcatcgccaagaagctcaagggttctgcttgatctgcacatacccttc 126
Query: 749 tgtcagatatc-----atatttacagattcgtcatacccgtcaatagattggtctgt 800
||||||| | | ||||||||||||||||||||| ||||||||| |||||||
Sbjct: 125 --tcagataccgtaaaacatttacagattcgtcatacccatcaatagatcggtctgt 71
>gb|CF433642.1|CF433642 NIT1_28_G06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_G06_A002 3', mRNA sequence
Length = 607
Score = 242 bits (122), Expect = 5e-062
Identities = 257/302 (85%)
Strand = Plus / Plus
Query: 422 gggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtg 481
||||||||||||| || |||||||| || ||| | |||||||||||||| |||||||| |
Sbjct: 6 gggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcacccagggcg 65
Query: 482 gtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgt 541
| ||||| ||||| ||||||||||||||| | || ||||||||||||||||| |||||||
Sbjct: 66 gcggccaggagaccacaccgctgacggcggtgacgcagctgacgcaccacgggatggtgt 125
Query: 542 ttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccagggtg 601
| ||||| ||||| ||||| ||||||||||| | || | |||||| || || || |
Sbjct: 126 tcgtgccggtggggtacacgttcggcgccaaaatatttgacatggagagcgtgcacggcg 185
Query: 602 gcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgaggtgg 661
|||| | |||||||| ||||||||||||| ||||||||| ||||||||| ||| |||
Sbjct: 186 gcagtgcgtacggcgcgggcacgttcgccggggacgggtcgcggtggccgacggagttgg 245
Query: 662 agctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctcaagg 721
|||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||
Sbjct: 246 agctggagcacgcctttcaccagggcaagtacttcgccggcatcgccaagaagctcaagg 305
Query: 722 gc 723
||
Sbjct: 306 gc 307
>gb|CF434383.1|CF434383 NIT1_29_F09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_29_F09_A002 5', mRNA sequence
Length = 678
Score = 240 bits (121), Expect = 2e-061
Identities = 373/457 (81%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| || |||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 172 ctccaatggcggtcaaaatctacgtcgtgttttactccacctacgggcatgttgccaagc 231
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 232 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 291
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| ||||||| || | || || || || |||||||| ||||| || ||| |||
Sbjct: 292 aggtcccaaaaattctatccaaggaggtcctcggcaagatgggtgcgccacccaagaccg 351
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| || ||||| || || |||| || || |||||||| |||||||
Sbjct: 352 acgtaccgatcatcacgccccaggagctcgctaaggccgatggcatcctcttcgggtttc 411
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | || |||||||| ||||| || |||||||| ||||
Sbjct: 412 ccacacggttcggcatgatggcgtcacaaatgaaggccttctttgacgccaccggcgggc 471
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||| ||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 472 tgtggcgggagcaaagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 531
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || ||||| ||||| |||||||| |||||| | || || |||||||||||||| |
Sbjct: 532 agggcggcggccaggagaccacaccgctaacggcggtgacgcacctgacgcaccacggga 591
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaa 572
||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 592 tggtgttcgtgccggtggggtacacgttcggcgccaa 628
>gb|AW564079.1|AW564079 LG1_282_C06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 474
Score = 218 bits (110), Expect = 7e-055
Identities = 299/362 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 113 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 172
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 173 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 232
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 233 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 292
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 293 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 352
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 353 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 412
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 413 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 472
Query: 476 ag 477
||
Sbjct: 473 ag 474
>gb|BG102419.1|BG102419 RHIZ2_23_D12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 483
Score = 214 bits (108), Expect = 1e-053
Identities = 300/364 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 116 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 175
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 176 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 235
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 236 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 295
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 296 acgcaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 355
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 356 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 415
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 416 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 475
Query: 476 aggg 479
||||
Sbjct: 476 aggg 479
>gb|CF428962.1|CF428962 PH1_18_E07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_E07_A002 5', mRNA sequence
Length = 554
Score = 212 bits (107), Expect = 4e-053
Identities = 299/363 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
||||||||||||| ||||||||||| |||| || |||| || |||||||||| ||| |
Sbjct: 192 ctccaatggcggtcaagatctacgtcgtgttttactccacctacgggcatgttgccaagc 251
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| || |||||||| || |||| || |||||||
Sbjct: 252 tagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtggaggtcaaaatatggc 311
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 312 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 371
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 372 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 431
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 432 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 491
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||| ||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 492 tgtggcgggagcaaagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 551
Query: 476 agg 478
|||
Sbjct: 552 agg 554
>gb|CF428854.1|CF428854 PH1_18_E07.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_E07_A002 3', mRNA sequence
Length = 518
Score = 204 bits (103), Expect = 1e-050
Identities = 223/263 (84%)
Strand = Plus / Plus
Query: 461 tcagcactggaacccagggtggtggccaagagactacaccgctgacggcgattacccagc 520
|||||||||| |||||||| || ||||| ||||| ||||||||||||||| | || ||||
Sbjct: 1 tcagcactggcacccagggcggcggccaggagaccacaccgctgacggcggtgacgcagc 60
Query: 521 tgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcg 580
||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| | || |
Sbjct: 61 tgacgcaccacgggatggtgttcgtgccggtggggtacacgttcggcgccaaaatatttg 120
Query: 581 gcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgccgccgacgggt 640
|||||| || || || ||||| | |||||||| ||||||||||||| |||||||
Sbjct: 121 acatggagagcgtgcacggcggcagtgcgtacggcgcgggcacgttcgccggggacgggt 180
Query: 641 cgaggtggccgagcgaggtggagctggagcacgccttccaccaggggaaatacttcgcgg 700
|| ||||||||| ||| |||||||||| |||||||| |||||||| || |||||||| |
Sbjct: 181 cgcggtggccgacggagttggagctggaccacgcctttcaccagggcaagtacttcgccg 240
Query: 701 gcatcgccaagaagctcaagggc 723
|||||||||||||||||||||||
Sbjct: 241 gcatcgccaagaagctcaagggc 263
>gb|CW228994.1|CW228994 104_670_11207069_116_37259_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207069, DNA
sequence
Length = 657
Score = 172 bits (87), Expect = 4e-041
Identities = 189/223 (84%)
Strand = Plus / Minus
Query: 501 gctgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacac 560
|||||||||| | || ||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 265 gctgacggcggtgacgcagctgacgcaccacgggatggtgttcgtgccggtggggtacac 206
Query: 561 cttcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccgg 620
||||||||||| | || | |||||| || || || ||||| | |||||||| ||
Sbjct: 205 gttcggcgccaaaatatttgacatggagagcgtgcacggcggcagtgcgtacggcgcggg 146
Query: 621 cacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttcca 680
||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||
Sbjct: 145 cacgttcgccggggacgggtcgcggtggccgacggagttggagctggagcacgcctttca 86
Query: 681 ccaggggaaatacttcgcgggcatcgccaagaagctcaagggc 723
|||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 85 ccagggcaagtacttcgccggcatcgccaagaagctcaagggc 43
Score = 157 bits (79), Expect = 2e-036
Identities = 193/231 (83%)
Strand = Plus / Minus
Query: 271 aagatgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagag 330
|||||||| ||||| || ||| ||||||| || ||||||| |||||||| || || |||
Sbjct: 616 aagatgggtgcgccacccaagaccgacgtaccgatcatcacgccgcaggagctcgctgag 557
Query: 331 gctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaag 390
|| || || |||||||| |||||||| ||| ||||||| |||||||| | |||||||||
Sbjct: 556 gccgatggcatcctcttcgggtttcccacacggttcggcatgatggcgtcacagatgaag 497
Query: 391 gcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctgcc 450
|| ||||| || |||||||| ||||| ||| ||||||||||||| || |||||||| ||
Sbjct: 496 gccttctttgacgccaccggcgggctgtggcgggagcagagcctggccggcaagcccgct 437
Query: 451 ggcatgttcttcagcactggaacccagggtggtggccaagagactacaccg 501
||| | |||||||||||||| |||||||| || ||||| ||||| ||||||
Sbjct: 436 ggcctcttcttcagcactggcacccagggcggcggccaggagaccacaccg 386
>gb|CW243974.1|CW243974 104_704_11220339_116_37577_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220339, DNA
sequence
Length = 661
Score = 172 bits (87), Expect = 4e-041
Identities = 189/223 (84%)
Strand = Plus / Minus
Query: 501 gctgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacac 560
|||||||||| | || ||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 527 gctgacggcggtgacgcagctgacgcaccacgggatggtgttcgtgccggtggggtacac 468
Query: 561 cttcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccgg 620
||||||||||| | || | |||||| || || || ||||| | |||||||| ||
Sbjct: 467 gttcggcgccaaaatatttgacatggagagcgtgcacggcggcagtgcgtacggcgcggg 408
Query: 621 cacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttcca 680
||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||
Sbjct: 407 cacgttcgccggggacgggtcgcggtggccgacggagttggagctggagcacgcctttca 348
Query: 681 ccaggggaaatacttcgcgggcatcgccaagaagctcaagggc 723
|||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 347 ccagggcaagtacttcgccggcatcgccaagaagctcaagggc 305
>gb|CW253913.1|CW253913 104_717_11225368_116_35113_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225368, DNA
sequence
Length = 640
Score = 172 bits (87), Expect = 4e-041
Identities = 189/223 (84%)
Strand = Plus / Minus
Query: 501 gctgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacac 560
|||||||||| | || ||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 376 gctgacggcggtgacgcagctgacgcaccacgggatggtgttcgtgccggtggggtacac 317
Query: 561 cttcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccgg 620
||||||||||| | || | |||||| || || || ||||| | |||||||| ||
Sbjct: 316 gttcggcgccaaaatatttgacatggagagcgtgcacggcggcagtgcgtacggcgcggg 257
Query: 621 cacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttcca 680
||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||
Sbjct: 256 cacgttcgccggggacgggtcgcggtggccgacggagttggagctggagcacgcctttca 197
Query: 681 ccaggggaaatacttcgcgggcatcgccaagaagctcaagggc 723
|||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 196 ccagggcaagtacttcgccggcatcgccaagaagctcaagggc 154
Score = 95.6 bits (48), Expect = 7e-018
Identities = 118/140 (84%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 362 ggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctgga 421
||||||| |||||||| | ||||||||||| | ||| || |||||||| ||||| |||
Sbjct: 635 ggttcggcatgatggcgtcacagatgaaggcct-ctttgacgccaccggcgggctgtggc 577
Query: 422 gggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtg 481
||||||||||||| || |||||||| || ||| | |||||||||||||| |||||||| |
Sbjct: 576 gggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcacccagggcg 517
Query: 482 gtggccaagagactacaccg 501
| ||||| ||||| ||||||
Sbjct: 516 gcggccaggagaccacaccg 497
>gb|CW387303.1|CW387303 fsbb001f071j10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071j10, DNA
sequence
Length = 627
Score = 172 bits (87), Expect = 4e-041
Identities = 189/223 (84%)
Strand = Plus / Minus
Query: 501 gctgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacac 560
|||||||||| | || ||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 374 gctgacggcggtgacgcagctgacgcaccacgggatggtgttcgtgccggtggggtacac 315
Query: 561 cttcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccgg 620
||||||||||| | || | |||||| || || || ||||| | |||||||| ||
Sbjct: 314 gttcggcgccaaaatatttgacatggagagcgtgcacggcggcagtgcgtacggcgcggg 255
Query: 621 cacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttcca 680
||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||
Sbjct: 254 cacgttcgccggggacgggtcgcggtggccgacggagttggagctggagcacgcctttca 195
Query: 681 ccaggggaaatacttcgcgggcatcgccaagaagctcaagggc 723
|||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 194 ccagggcaagtacttcgccggcatcgccaagaagctcaagggc 152
Score = 77.8 bits (39), Expect = 2e-012
Identities = 85/99 (85%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 382 cagatgaaggcgttcttcgatgccaccggtggg-ctctggagggagcagagcctcgctgg 440
||||||||||| ||||| || |||||||| ||| || ||| ||||||||||||| || ||
Sbjct: 616 cagatgaaggccttctttgacgccaccggcggggctgtggcgggagcagagcctggccgg 557
Query: 441 caagcctgccggcatgttcttcagcactggaacccaggg 479
|||||| || ||| | |||||||||||||| ||||||||
Sbjct: 556 caagcccgctggcctcttcttcagcactggcacccaggg 518
>gb|CF428465.1|CF428465 PH1_15_D08.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_D08_A002 3', mRNA sequence
Length = 520
Score = 165 bits (83), Expect = 9e-039
Identities = 176/207 (85%)
Strand = Plus / Plus
Query: 517 cagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctg 576
||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| |
Sbjct: 15 cagctgacgcaccacgggatggtgttcgtgccggtggggtacacgttcggcgccaaaata 74
Query: 577 ttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgccgccgac 636
|| | |||||| || || || ||||| | |||||||| ||||||||||||| |||
Sbjct: 75 tttgacatggagagcgtgcacggcggcagtgcgtacggcgcgggcacgttcgccggggac 134
Query: 637 gggtcgaggtggccgagcgaggtggagctggagcacgccttccaccaggggaaatacttc 696
|||||| ||||||||| ||| ||||||||||||||||||| |||||||| || ||||||
Sbjct: 135 gggtcgcggtggccgacggagttggagctggagcacgcctttcaccagggcaagtacttc 194
Query: 697 gcgggcatcgccaagaagctcaagggc 723
|| ||||||||||||||||||||||||
Sbjct: 195 gccggcatcgccaagaagctcaagggc 221
>gb|CW243975.1|CW243975 104_704_11220339_148_37578_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220339, DNA
sequence
Length = 692
Score = 163 bits (82), Expect = 4e-038
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 20 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 79
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 80 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 139
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 140 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 199
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 200 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 259
Query: 476 agggtggtggccaagagactacaccg 501
|||| || ||||| ||||| ||||||
Sbjct: 260 agggcggcggccaggagaccacaccg 285
Score = 153 bits (77), Expect = 4e-035
Identities = 179/213 (84%)
Strand = Plus / Plus
Query: 501 gctgacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacac 560
|||||||||| | || ||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 406 gctgacggcggtgacgcagctgacgcaccacgggatggtgttcgtgccggtggggtacac 465
Query: 561 cttcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccgg 620
||||||||||| | || | |||||| || || || ||||| | |||||||| ||
Sbjct: 466 gttcggcgccaaaatatttgacatggagagcgtgcacggcggcagtgcgtacggcgcggg 525
Query: 621 cacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttcca 680
||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||
Sbjct: 526 cacgttcgccggggacgggtcgcggtggccgacggagttggagctggagcacgcctttca 585
Query: 681 ccaggggaaatacttcgcgggcatcgccaagaa 713
|||||| || |||||||| ||||||||||||||
Sbjct: 586 ccagggcaagtacttcgccggcatcgccaagaa 618
>gb|CW303725.1|CW303725 104_788_11465394_116_35692_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465394, DNA
sequence
Length = 674
Score = 163 bits (82), Expect = 4e-038
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 373 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 314
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 313 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 254
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 253 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 194
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 193 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 134
Query: 476 agggtggtggccaagagactacaccg 501
|||| || ||||| ||||| ||||||
Sbjct: 133 agggcggcggccaggagaccacaccg 108
Score = 58.0 bits (29), Expect = 2e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 160 gggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaaggtgtt 219
|||||||||| ||| |||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 575 gggcatgttgccaagctagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtg 516
Query: 220 gaggctaagatatggcaggtc 240
|||| || ||||||||||||
Sbjct: 515 gaggtcaaaatatggcaggtc 495
>gb|CW253914.1|CW253914 104_717_11225368_148_35109_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225368, DNA
sequence
Length = 635
Score = 155 bits (78), Expect = 9e-036
Identities = 213/258 (82%)
Strand = Plus / Plus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 266 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 325
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 326 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 385
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 386 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 445
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| ||||
Sbjct: 446 tgtggcgggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcaccc 505
Query: 476 agggtggtggccaagaga 493
|||| || ||||| ||||
Sbjct: 506 agggcggcggccaggaga 523
Score = 58.0 bits (29), Expect = 2e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 160 gggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaaggtgtt 219
|||||||||| ||| |||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 64 gggcatgttgccaagctagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtg 123
Query: 220 gaggctaagatatggcaggtc 240
|||| || ||||||||||||
Sbjct: 124 gaggtcaaaatatggcaggtc 144
>gb|CW387304.1|CW387304 fsbb001f071j10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071j10, DNA
sequence
Length = 535
Score = 143 bits (72), Expect = 3e-032
Identities = 214/260 (82%), Gaps = 1/260 (0%)
Strand = Plus / Plus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
||||||| |||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct: 274 aggtcccagaaattctatccgaggaggtcctcggcaagatgggtgcgccacccaagaccg 333
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
|||| || ||||||| |||||||| || || ||||| || || |||||||| |||||||
Sbjct: 334 acgtaccgatcatcacgccgcaggagctcgctgaggccgatggcatcctcttcgggtttc 393
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| ||| ||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||
Sbjct: 394 ccacacggttcggcatgatggcgtcacagatgaaggccttctttgacgccaccggcgggc 453
Query: 416 tctgg-agggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacc 474
| ||| ||||||||||||| || |||||||| || ||| | |||||||||||||| |||
Sbjct: 454 tgtggcggggagcagagcctggccggcaagcccgctggcctcttcttcagcactggcacc 513
Query: 475 cagggtggtggccaagagac 494
||||| || ||||| |||||
Sbjct: 514 cagggcggcggccaggagac 533
Score = 58.0 bits (29), Expect = 2e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 160 gggcatgttggcaaactagctgacgagatcaagaaaggtgccttatctgttgaaggtgtt 219
|||||||||| ||| |||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 72 gggcatgttgccaagctagctgaggagatcaagaaaggtgctgcgtcagttgaaggcgtg 131
Query: 220 gaggctaagatatggcaggtc 240
|||| || ||||||||||||
Sbjct: 132 gaggtcaaaatatggcaggtc 152
>gb|AW283903.1|AW283903 LG1_282_C06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 414
Score = 139 bits (70), Expect = 5e-031
Identities = 103/114 (90%)
Strand = Plus / Plus
Query: 610 tacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggag 669
|||||||| ||||||||||||| ||||||||| ||||||||| ||| |||||||||||
Sbjct: 14 tacggcgcgggcacgttcgccggggacgggtcgcggtggccgacggagttggagctggag 73
Query: 670 cacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctcaagggc 723
|||||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 74 cacgcctttcaccagggcaagtacttcgccggcatcgccaagaagctcaagggc 127
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 240,977
Number of Sequences: 832831
Number of extensions: 240977
Number of successful extensions: 65404
Number of sequences better than 0.5: 76
Number of HSP's better than 0.5 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65197
Number of HSP's gapped (non-prelim): 171
length of query: 964
length of database: 491,359,669
effective HSP length: 20
effective length of query: 944
effective length of database: 474,703,049
effective search space: 448119678256
effective search space used: 448119678256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)