BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.2
(1019 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN128660.1|CN128660 RHOH1_30_G10.g1_A002 Acid- and alkal... 1195 0.0
gb|CD463125.1|CD463125 ETH1_42_A11.b1_A002 Ethylene-treated... 926 0.0
gb|CN128569.1|CN128569 RHOH1_30_G10.b1_A002 Acid- and alkal... 926 0.0
gb|CD430682.1|CD430682 ETH1_20_C10.g1_A002 Ethylene-treated... 912 0.0
gb|BG556861.1|BG556861 EM1_39_E11.b1_A002 Embryo 1 (EM1) So... 902 0.0
gb|CD463150.1|CD463150 ETH1_42_A11.g1_A002 Ethylene-treated... 902 0.0
gb|CN141236.1|CN141236 OX1_50_E01.b1_A002 Oxidatively-stres... 902 0.0
gb|CF486181.1|CF486181 POL1_36_E11.b1_A002 Pollen Sorghum b... 854 0.0
gb|CD432713.1|CD432713 ETH1_25_F07.g1_A002 Ethylene-treated... 852 0.0
gb|BE597381.1|BE597381 PI1_72_G12.g1_A002 Pathogen induced ... 850 0.0
gb|CN124370.1|CN124370 RHOH1_4_G03.b1_A002 Acid- and alkali... 741 0.0
gb|AW677370.1|AW677370 DG1_6_G12.b1_A002 Dark Grown 1 (DG1)... 729 0.0
gb|BG049316.1|BG049316 OV1_18_D09.g1_A002 Ovary 1 (OV1) Sor... 688 0.0
gb|BG557945.1|BG557945 EM1_39_E11.g1_A002 Embryo 1 (EM1) So... 678 0.0
gb|BM327398.1|BM327398 PIC1_14_C07.g1_A002 Pathogen-infecte... 678 0.0
gb|CF485251.1|CF485251 POL1_30_H05.b1_A002 Pollen Sorghum b... 672 0.0
gb|BG465337.1|BG465337 EM1_75_B01.g1_A002 Embryo 1 (EM1) So... 654 0.0
gb|CD432617.1|CD432617 ETH1_25_F07.b1_A002 Ethylene-treated... 644 0.0
gb|CF488232.1|CF488232 POL1_48_C07.g1_A002 Pollen Sorghum b... 636 0.0
gb|CF486265.1|CF486265 POL1_36_E11.g1_A002 Pollen Sorghum b... 597 e-169
gb|CF485333.1|CF485333 POL1_30_H05.g1_A002 Pollen Sorghum b... 579 e-163
gb|BG240142.1|BG240142 OV1_18_D09.b1_A002 Ovary 1 (OV1) Sor... 521 e-146
gb|CF488150.1|CF488150 POL1_48_C07.b1_A002 Pollen Sorghum b... 507 e-142
gb|BG559243.1|BG559243 RHIZ2_52_D10.b1_A003 Rhizome2 (RHIZ2... 446 e-123
gb|CL169616.1|CL169616 104_368_10812763_148_31808_235 Sorgh... 424 e-117
gb|BG560491.1|BG560491 RHIZ2_75_B03.b1_A003 Rhizome2 (RHIZ2... 404 e-111
gb|CN128667.1|CN128667 RHOH1_30_H05.g1_A002 Acid- and alkal... 402 e-110
gb|BG357807.1|BG357807 OV2_30_E07.b1_A002 Ovary 2 (OV2) Sor... 400 e-109
gb|CN144473.1|CN144473 WOUND1_22_C06.g1_A002 Wounded leaves... 394 e-108
gb|CF770146.1|CF770146 DSBF1_6_A09.b1_A010 Drought-stressed... 392 e-107
gb|CF488544.1|CF488544 POL1_50_D11.g1_A002 Pollen Sorghum b... 361 8e-098
gb|BF318007.1|BF318007 OV1_10_F06.b1_A002 Ovary 1 (OV1) Sor... 355 5e-096
gb|BE361076.1|BE361076 DG1_69_B08.b1_A002 Dark Grown 1 (DG1... 329 3e-088
gb|BE366220.1|BE366220 PI1_31_B08.b2_A002 Pathogen induced ... 329 3e-088
gb|BG739586.1|BG739586 EM1_82_F12.b1_A002 Embryo 1 (EM1) So... 325 5e-087
gb|BI074813.1|BI074813 IP1_16_G05.b1_A002 Immature pannicle... 313 2e-083
gb|CD221256.1|CD221256 CCC1_74_E08.g1_A007 Callus culture/c... 309 3e-082
gb|BG411038.1|BG411038 EM1_25_A05.b1_A002 Embryo 1 (EM1) So... 301 7e-080
gb|BE366246.1|BE366246 PI1_31_B08.g1_A002 Pathogen induced ... 299 3e-079
gb|BG739419.1|BG739419 EM1_82_F12.g1_A002 Embryo 1 (EM1) So... 299 3e-079
gb|AW745465.1|AW745465 WS1_35_G04.b1_A002 Water-stressed 1 ... 287 1e-075
gb|CN144412.1|CN144412 WOUND1_22_C06.b1_A002 Wounded leaves... 287 1e-075
gb|BG556775.1|BG556775 EM1_38_D10.b1_A002 Embryo 1 (EM1) So... 280 2e-073
gb|BG932934.1|BG932934 DG1_69_B08.g1_A002 Dark Grown 1 (DG1... 268 9e-070
gb|BG560132.1|BG560132 RHIZ2_69_G02.b1_A003 Rhizome2 (RHIZ2... 258 9e-067
gb|AW678236.1|AW678236 WS1_14_H05.b1_A002 Water-stressed 1 ... 250 2e-064
gb|BI074494.1|BI074494 IP1_16_G05.g1_A002 Immature pannicle... 244 1e-062
gb|BG410710.1|BG410710 EM1_25_A05.g1_A002 Embryo 1 (EM1) So... 242 5e-062
gb|CD221229.1|CD221229 CCC1_74_E08.b1_A007 Callus culture/c... 236 3e-060
gb|CN128576.1|CN128576 RHOH1_30_H05.b1_A002 Acid- and alkal... 234 1e-059
gb|BG556535.1|BG556535 EM1_38_D10.g1_A002 Embryo 1 (EM1) So... 222 5e-056
gb|CW089881.1|CW089881 104_435_10948964_114_32612_072 Sorgh... 178 7e-043
gb|CW277256.1|CW277256 104_751_11405927_148_35413_092 Sorgh... 178 7e-043
gb|CW172766.1|CW172766 104_584_11156467_148_36542_078 Sorgh... 174 1e-041
gb|CW183802.1|CW183802 104_599_11164809_148_36672_033 Sorgh... 174 1e-041
gb|CW260253.1|CW260253 104_726_11228863_148_35188_018 Sorgh... 174 1e-041
gb|CW500362.1|CW500362 fsbb001f295k09f0 Sorghum methylation... 174 1e-041
gb|CW220477.1|CW220477 104_655_11197369_148_37158_013 Sorgh... 170 2e-040
gb|BE597678.1|BE597678 PI1_72_G12.b1_A002 Pathogen induced ... 161 2e-037
gb|BM328253.1|BM328253 PIC1_22_H06.g1_A002 Pathogen-infecte... 161 2e-037
gb|BG558927.1|BG558927 RHIZ2_52_D10.g1_A003 Rhizome2 (RHIZ2... 159 6e-037
gb|CW031012.1|CW031012 104_259_10500552_114_30397 Sorghum m... 149 6e-034
gb|CW171339.1|CW171339 104_582_11155686_116_36528_029 Sorgh... 149 6e-034
gb|BG817376.1|BG817376 EM1_75_B01.b1_A002 Embryo 1 (EM1) So... 149 6e-034
gb|CW260646.1|CW260646 104_727_11229078_116_35196_023 Sorgh... 147 2e-033
gb|CW090835.1|CW090835 104_436_10949500_114_32607_002 Sorgh... 145 9e-033
gb|CW090836.1|CW090836 104_436_10949500_116_32611_002 Sorgh... 145 9e-033
gb|CW103784.1|CW103784 104_472_11012075_148_34434_038 Sorgh... 145 9e-033
gb|CW213082.1|CW213082 104_644_11191359_148_37027_056 Sorgh... 145 9e-033
gb|CW316112.1|CW316112 104_807_11472721_148_35844_007 Sorgh... 139 6e-031
gb|CW398305.1|CW398305 fsbb001f087k23f0 Sorghum methylation... 139 6e-031
gb|CF770226.1|CF770226 DSBF1_6_A09.g1_A010 Drought-stressed... 139 6e-031
gb|BG559904.1|BG559904 RHIZ2_75_B03.g1_A003 Rhizome2 (RHIZ2... 131 1e-028
gb|CF488464.1|CF488464 POL1_50_D11.b1_A002 Pollen Sorghum b... 131 1e-028
gb|AW745579.1|AW745579 WS1_35_G04.g1_A002 Water-stressed 1 ... 123 3e-026
gb|CN124445.1|CN124445 RHOH1_4_G03.g1_A002 Acid- and alkali... 119 5e-025
gb|CN141310.1|CN141310 OX1_50_E01.g1_A002 Oxidatively-stres... 119 5e-025
gb|BI140327.1|BI140327 IP1_52_A03.g1_A002 Immature pannicle... 115 8e-024
gb|CW171340.1|CW171340 104_582_11155686_148_36527_029 Sorgh... 107 2e-021
gb|CD428992.1|CD428992 ETH1_1_A07.g1_A002 Ethylene-treated ... 105 8e-021
gb|CD429707.1|CD429707 ETH1_15_H12.b1_A002 Ethylene-treated... 105 8e-021
gb|BF317864.1|BF317864 OV1_10_F06.g1_A002 Ovary 1 (OV1) Sor... 103 3e-020
gb|CW277255.1|CW277255 104_751_11405927_116_35409_092 Sorgh... 101 1e-019
gb|CF756372.1|CF756372 DSAF1_5_E02.b1_A011 Drought-stressed... 98 2e-018
gb|CF756458.1|CF756458 DSAF1_5_E02.g1_A011 Drought-stressed... 98 2e-018
gb|BM328532.1|BM328532 PIC1_30_D03.g1_A002 Pathogen-infecte... 96 8e-018
gb|AW677237.1|AW677237 DG1_6_G12.g1_A002 Dark Grown 1 (DG1)... 88 2e-015
gb|CF757800.1|CF757800 DSAF1_22_E01.g1_A011 Drought-stresse... 76 7e-012
gb|BM322866.1|BM322866 PIC1_14_C07.b1_A002 Pathogen-infecte... 72 1e-010
gb|CW213081.1|CW213081 104_644_11191359_116_37026_056 Sorgh... 66 7e-009
gb|CW398306.1|CW398306 fsbb001f087k23k0 Sorghum methylation... 46 0.006
gb|CW466408.1|CW466408 fsbb001f217k04f0 Sorghum methylation... 46 0.006
gb|CW152701.1|CW152701 104_554_11144633_148_36333_079 Sorgh... 44 0.025
gb|CW193240.1|CW193240 104_616_11179461_116_36777_095 Sorgh... 44 0.025
gb|CW193241.1|CW193241 104_616_11179461_148_36778_095 Sorgh... 44 0.025
gb|CW227072.1|CW227072 104_665_11205221_148_37224_025 Sorgh... 44 0.025
gb|BG158811.1|BG158811 RHIZ2_44_F08.b1_A003 Rhizome2 (RHIZ2... 44 0.025
gb|CF488063.1|CF488063 POL1_47_C06.g1_A002 Pollen Sorghum b... 44 0.025
gb|CD463279.1|CD463279 ETH1_43_D06.b1_A002 Ethylene-treated... 42 0.099
gb|CD463317.1|CD463317 ETH1_43_D06.g1_A002 Ethylene-treated... 42 0.099
gb|BZ348391.1|BZ348391 hp57b04.g1 WGS-SbicolorF (JM107 adap... 40 0.39
gb|CW238786.1|CW238786 104_695_11216920_148_37420_052 Sorgh... 40 0.39
gb|CW324304.1|CW324304 104_818_11477089_116_35902_001 Sorgh... 40 0.39
gb|CW451578.1|CW451578 fsbb001f191l09k0 Sorghum methylation... 40 0.39
gb|CW469720.1|CW469720 fsbb001f222j03k0 Sorghum methylation... 40 0.39
gb|BG948253.1|BG948253 IP1_11_C03.g1_A002 Immature pannicle... 40 0.39
>gb|CN128660.1|CN128660 RHOH1_30_G10.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_30_G10_A002 5', mRNA sequence
Length = 877
Score = 1195 bits (603), Expect = 0.0
Identities = 741/787 (94%), Gaps = 15/787 (1%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 805
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 804 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 745
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 685
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 625
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 624 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 565
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 564 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 505
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttga 663
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 aatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggccttgaacttga 445
Query: 664 tcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 385
Query: 724 gctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaaga 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaaga 325
Query: 784 ggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagaaccagtccc 843
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 ggatcttggcctccttctgccacaggccgagggaggccagcactccgtagaaccagtccc 265
Query: 844 agaggaacatctcccccacccgccctgctgcgcctccctcc------------tcctcct 891
| ||||||||||| ||| || |||||||||||||||||||| |||||||
Sbjct: 264 acaggaacatctcgccctccggccctgctgcgcctccctcctcctcctcctcctcctcct 205
Query: 892 ggagcctctacgcctgactttgtcgcgcggaatcccagagagggcggcggcggagatcgc 951
|||||||||||||||| ||| |||||| ||||| |||||||||||||||||||| |
Sbjct: 204 ggagcctctacgcctgccttcctcgcgc---ctcccaaagagggcggcggcggagatcac 148
Query: 952 tgcgatctgggggttggtggtgggagaggaaaccgaggagagagggatgcggatgtgtgt 1011
| |||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 147 cgggatctgagggttggtggtgggagaggaaaccgaggagagggggacgcggatgtgtgt 88
Query: 1012 ggatctg 1018
|||||||
Sbjct: 87 ggatctg 81
>gb|CD463125.1|CD463125 ETH1_42_A11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_A11_A002 3', mRNA sequence
Length = 680
Score = 926 bits (467), Expect = 0.0
Identities = 512/527 (97%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 468
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 467 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 408
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 348
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 288
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 287 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 228
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 227 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 168
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttga 663
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 167 aatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggccttgaacttga 108
Query: 664 tcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 48
Query: 724 gctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcg 770
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 gctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcg 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactgt-ttttcctc 157
||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 663 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 604
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 603 ttcataccctccatgat 587
>gb|CN128569.1|CN128569 RHOH1_30_G10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_G10_A002 3', mRNA sequence
Length = 747
Score = 926 bits (467), Expect = 0.0
Identities = 512/527 (97%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 468
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 467 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 408
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 348
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 288
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 287 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 228
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 227 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 168
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttga 663
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 167 aatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggccttgaacttga 108
Query: 664 tcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 48
Query: 724 gctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcg 770
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 gctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcg 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactgt-ttttcctc 157
||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 663 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 604
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 603 ttcataccctccatgat 587
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 47 gcaagtacttagtaaacgttgtatggaaaagcgaaagaat 86
|||||| |||||||||||| ||||||||||| |||||||
Sbjct: 726 gcaagttcttagtaaacgtcctatggaaaagcaaaagaat 687
>gb|CD430682.1|CD430682 ETH1_20_C10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_20_C10_A002 5', mRNA sequence
Length = 624
Score = 912 bits (460), Expect = 0.0
Identities = 584/624 (93%), Gaps = 16/624 (2%)
Strand = Plus / Minus
Query: 395 ggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgg 565
Query: 455 gatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacag 514
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 gatatcaatcttgttgccaaggatgagaaatggaacattggccaaggaatcatcagacag 505
Query: 515 gagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccag 574
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct: 504 gagagcatcgagctccttttttgattctgcaaatcgctccttgtcatatgcatctaccag 445
Query: 575 gtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtg 634
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 444 gtatactacagcatcaacctttgcgtaataatccttccagacgcggcgagcgatctggtg 385
Query: 635 gccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgg 694
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 gccgccgaggtcgaaggccttgaacttgatcttgccgatgctgagctcttccgacgtcgg 325
Query: 695 gtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggt 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggt 265
Query: 755 cttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgag 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgag 205
Query: 815 ggaggccagcaccccgtagaaccagtcccagaggaacatctcccccacccgccctgctgc 874
|||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||
Sbjct: 204 ggaggccagcaccccgtagaaccagtcccacaggaacatctcgccctccggccctgctgc 145
Query: 875 gcctccctcctcc------------tcctggagcctctacgcctgactttgtcgcgcgga 922
||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 144 gcctccctcctcctcctcctcctcctcctggagcctctacgcctgccttcctcgcgc--- 88
Query: 923 atcccagagagggcggcggcggagatcgctgcgatctgggggttggtggtgggagaggaa 982
||||| |||||||||||||||||||| | | |||||| |||||||||| ||||||||||
Sbjct: 87 ctcccaaagagggcggcggcggagatcaccgggatctgagggttggtgg-gggagaggaa 29
Query: 983 accgaggagagagggatgcggatg 1006
||||||||||| |||| |||||||
Sbjct: 28 accgaggagagggggacgcggatg 5
>gb|BG556861.1|BG556861 EM1_39_E11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 902 bits (455), Expect = 0.0
Identities = 488/499 (97%)
Strand = Plus / Minus
Query: 358 ggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggccta 417
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggacattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggccta 450
Query: 418 ggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaagga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaagga 390
Query: 478 tgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttg 537
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 389 tgagaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttg 330
Query: 538 attcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttg 597
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 attctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttg 270
Query: 598 cgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttga 657
|||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 269 cgtaataatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggccttga 210
Query: 658 acttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgca 717
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 209 acttgatcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctggtgctgca 150
Query: 718 ccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaa 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaa 90
Query: 778 ggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagaacc 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagaacc 30
Query: 838 agtcccagaggaacatctc 856
||||||| |||||||||||
Sbjct: 29 agtcccacaggaacatctc 11
>gb|CD463150.1|CD463150 ETH1_42_A11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_A11_A002 5', mRNA sequence
Length = 608
Score = 902 bits (455), Expect = 0.0
Identities = 572/611 (93%), Gaps = 15/611 (2%)
Strand = Plus / Minus
Query: 410 aaggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgtt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgtt 549
Query: 470 gccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctc 529
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 548 gccaaggatgagaaatggaacattggccaaggaatcatcagacaggagagcatcgagctc 489
Query: 530 cttctttgattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatc 589
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 488 cttttttgattctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatc 429
Query: 590 aacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaa 649
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 428 aacctttgcgtaataatccttccagacgcggcgagcgatctggtggccgccgaggtcgaa 369
Query: 650 cgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctg 709
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 368 ggccttgaacttgatcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctg 309
Query: 710 gtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtc 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtc 249
Query: 770 gaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcacccc 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcacccc 189
Query: 830 gtagaaccagtcccagaggaacatctcccccacccgccctgctgcgcctccctcctc--- 886
||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||
Sbjct: 188 gtagaaccagtcccacaggaacatctcgccctccggccctgctgcgcctccctcctcctc 129
Query: 887 ---------ctcctggagcctctacgcctgactttgtcgcgcggaatcccagagagggcg 937
||||||||||||||||||||| ||| |||||| ||||| ||||||||
Sbjct: 128 ctcctcctcctcctggagcctctacgcctgccttcctcgcgc---ctcccaaagagggcg 72
Query: 938 gcggcggagatcgctgcgatctgggggttggtggtgggagaggaaaccgaggagagaggg 997
|||||||||||| | | |||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 71 gcggcggagatcaccgggatctgagggttggtggtgggagaggaaaccgaggagaggggg 12
Query: 998 atgcggatgtg 1008
| |||||||||
Sbjct: 11 acgcggatgtg 1
>gb|CN141236.1|CN141236 OX1_50_E01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_E01_A002 3', mRNA sequence
Length = 721
Score = 902 bits (455), Expect = 0.0
Identities = 500/515 (97%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 456
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 455 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 396
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 336
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 276
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 275 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 216
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 215 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 156
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttga 663
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 155 aatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggccttgaacttga 96
Query: 664 tcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 tcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 36
Query: 724 gctcgtccttgagcatgtggagcagcgtggtcttg 758
|||||||||||||||||||||||||||||||||||
Sbjct: 35 gctcgtccttgagcatgtggagcagcgtggtcttg 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactgt-ttttcctc 157
||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 651 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 592
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 591 ttcataccctccatgat 575
>gb|CF486181.1|CF486181 POL1_36_E11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_E11_A002 3', mRNA sequence
Length = 720
Score = 854 bits (431), Expect = 0.0
Identities = 476/491 (96%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 432
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 431 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 372
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 312
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 252
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 251 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 192
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 191 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 132
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttga 663
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 131 aatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggccttgaacttga 72
Query: 664 tcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 12
Query: 724 gctcgtccttg 734
|||||||||||
Sbjct: 11 gctcgtccttg 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactgt-ttttcctc 157
||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 627 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 568
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 567 ttcataccctccatgat 551
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 47 gcaagtacttagtaaacgttgtatggaaaagcgaaagaat 86
|||||| |||||||||||| ||||||||||| |||||||
Sbjct: 690 gcaagttcttagtaaacgtcctatggaaaagcaaaagaat 651
>gb|CD432713.1|CD432713 ETH1_25_F07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_25_F07_A002 5', mRNA sequence
Length = 642
Score = 852 bits (430), Expect = 0.0
Identities = 568/614 (92%), Gaps = 15/614 (2%)
Strand = Plus / Minus
Query: 417 aggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaagg 476
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aggtgatcccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaagg 583
Query: 477 atgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctccttcttt 536
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 582 atgagaaatggaacattggccaaggaatcatcagacaggagagcatcgagctcctttttt 523
Query: 537 gattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaaccttt 596
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gattctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaaccttt 463
Query: 597 gcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttg 656
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 462 gcgtaataatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggccttg 403
Query: 657 aacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgc 716
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 402 aacttgatcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggcaggtgctgc 343
Query: 717 accaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggcca 776
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 342 accacccgctcgtccttgagcatgtggagcagcgtggtctcgccggcgttgtcgaggcca 283
Query: 777 aggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagaac 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 282 tggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagatc 223
Query: 837 cagtcccagaggaacatctcccccacccgccctgctgcgcctccctcctcc--------- 887
|||||||| ||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 222 cagtcccacaggaacatctcgccctccggccctgctgcgcctccctcctcctcctcctcc 163
Query: 888 ---tcctggagcctctacgcctgactttgtcgcgcggaatcccagagagggcggcggcgg 944
|||||||||||||||||||| ||| |||||| ||||| |||||||||||||||
Sbjct: 162 tcctcctggagcctctacgcctgccttcctcgcgc---ctcccaaagagggcggcggcgg 106
Query: 945 agatcgctgcgatctgggggttggtggtgggagaggaaaccgaggagagagggatgcgga 1004
||||| | | |||||| |||||||||||||||||||| ||||||||||| |||| |||||
Sbjct: 105 agatcaccgggatctgagggttggtggtgggagaggagaccgaggagagggggacgcgga 46
Query: 1005 tgtgtgtggatctg 1018
||||||||||||||
Sbjct: 45 tgtgtgtggatctg 32
>gb|BE597381.1|BE597381 PI1_72_G12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 685
Score = 850 bits (429), Expect = 0.0
Identities = 477/493 (96%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 434
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 433 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 374
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 314
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 254
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 253 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 194
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 193 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 134
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttga 663
||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 133 aatccttacagacgcggcgagcgatctggtggccgccgaggtcgaaggccttgaacttga 74
Query: 664 tcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctggtgctgcaccaacc 14
Query: 724 gctcgtccttgag 736
|||||||||||||
Sbjct: 13 gctcgtccttgag 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactg-tttttcctc 157
||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct: 629 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 570
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 569 ttcataccctccatgat 553
>gb|CN124370.1|CN124370 RHOH1_4_G03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_4_G03_A002 3', mRNA sequence
Length = 607
Score = 741 bits (374), Expect = 0.0
Identities = 419/434 (96%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 434 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagtcccacttgaaac 375
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 374 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 315
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 255
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 195
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 194 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 135
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 134 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 75
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttga 663
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 74 aatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggccttgaacttga 15
Query: 664 tcttgccgatgctg 677
||||||||||||||
Sbjct: 14 tcttgccgatgctg 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactg-tttttcctc 157
||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct: 570 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 511
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 510 ttcataccctccatgat 494
>gb|AW677370.1|AW677370 DG1_6_G12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 729 bits (368), Expect = 0.0
Identities = 486/524 (92%), Gaps = 16/524 (3%)
Strand = Plus / Minus
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 554 tcagacaggagagcatcgagctcctt-tttgattctgcaaatcgctccttgtcatatgca 496
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 495 tctaccaggtatactacagcatcaacctttgcgtaataatccttccagacgcggcgagcg 436
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 435 atctggtggccgccgaggtcgaaggccttgaacttgatcttgccgatgctgagctcttcc 376
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 316
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 256
Query: 807 aggccgagggaggccagcaccccgtagaaccagtcccagaggaacatctcccccacccgc 866
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||
Sbjct: 255 aggccgagggaggccagcaccccgtagaaccagtcccacaggaacatctcgccctccggc 196
Query: 867 cctgctgcgcctccctcctc------------ctcctggagcctctacgcctgactttgt 914
|||||||||||||||||||| ||||||||||||||||||||| ||| |
Sbjct: 195 cctgctgcgcctccctcctcctcctcctcctcctcctggagcctctacgcctgccttcct 136
Query: 915 cgcgcggaatcccagagagggcggcggcggagatcgctgcgatctgggggttggtggtgg 974
||||| ||||| |||||||||||||||||||| | | |||||| |||||||||||||
Sbjct: 135 cgcgc---ctcccaaagagggcggcggcggagatcaccgggatctgagggttggtggtgg 79
Query: 975 gagaggaaaccgaggagagagggatgcggatgtgtgtggatctg 1018
||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 78 gagaggaaaccgaggagagggggacgcggatgtgtgtggatctg 35
>gb|BG049316.1|BG049316 OV1_18_D09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 609
Score = 688 bits (347), Expect = 0.0
Identities = 386/399 (96%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 340
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 339 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 280
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 220
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 160
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 159 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 100
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 99 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 40
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccga 642
|||||||||| |||||||| |||||||||||||||||||
Sbjct: 39 aatccttccagacgcggcgagcgatctggtggccgccga 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactgt-ttttcctc 157
||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 535 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 476
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 475 ttcataccctccatgat 459
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 47 gcaagtacttagtaaacgttgtatggaaaagcgaaagaat 86
|||||| |||||||||||| ||||||||||| |||||||
Sbjct: 598 gcaagttcttagtaaacgtcctatggaaaagcaaaagaat 559
>gb|BG557945.1|BG557945 EM1_39_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 441
Score = 678 bits (342), Expect = 0.0
Identities = 381/394 (96%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 339
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 338 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 279
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 219
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 159
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 158 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 99
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 98 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 39
Query: 604 aatccttccacacgcggcgcgcgatctggtggcc 637
|||||||||| |||||||| ||||||||||||||
Sbjct: 38 aatccttccagacgcggcgagcgatctggtggcc 5
>gb|BM327398.1|BM327398 PIC1_14_C07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 572
Score = 678 bits (342), Expect = 0.0
Identities = 384/398 (96%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 339
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 338 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 279
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 219
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 218 accgtagctcctcttcagagacagcatatgggatatcaatcttgttgccaaggatgagaa 159
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 158 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 99
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 98 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 39
Query: 604 aatccttccacacgcggcgcgcgatctggtggccgccg 641
|||||||||| |||||||| ||||||||||||||||||
Sbjct: 38 aatccttccagacgcggcgagcgatctggtggccgccg 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactg-tttttcctc 157
||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct: 534 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 475
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 474 ttcataccctccatgat 458
>gb|CF485251.1|CF485251 POL1_30_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H05_A002 3', mRNA sequence
Length = 570
Score = 672 bits (339), Expect = 0.0
Identities = 381/395 (96%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 336
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 335 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 276
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 275 tggagtcaccaaggttgaccttgcccttcccgattgtgaagttgctaaggcctaggtgat 216
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 156
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 155 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 96
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 95 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 36
Query: 604 aatccttccacacgcggcgcgcgatctggtggccg 638
|||||||||| |||||||| |||||||||||||||
Sbjct: 35 aatccttccagacgcggcgagcgatctggtggccg 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactgt-ttttcctc 157
||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 531 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 472
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 471 ttcataccctccatgat 455
>gb|BG465337.1|BG465337 EM1_75_B01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 654 bits (330), Expect = 0.0
Identities = 372/386 (96%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 327
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 326 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 267
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 207
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 147
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 146 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 87
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 86 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 27
Query: 604 aatccttccacacgcggcgcgcgatc 629
|||||||||| |||||| | ||||||
Sbjct: 26 aatccttccagacgcggggagcgatc 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 41/42 (97%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 134 caatgttaagcactgttttt-cctcttcataccctccatgat 174
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 488 caatgttaagcactgttttttcctcttcataccctccatgat 447
>gb|CD432617.1|CD432617 ETH1_25_F07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_25_F07_A002 3', mRNA sequence
Length = 587
Score = 644 bits (325), Expect = 0.0
Identities = 358/369 (97%)
Strand = Plus / Minus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 310
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 309 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 250
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 190
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 130
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 129 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 70
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 69 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 10
Query: 604 aatccttcc 612
|||||||||
Sbjct: 9 aatccttcc 1
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactg-tttttcctc 157
||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct: 505 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 446
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 445 ttcataccctccatgat 429
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 47 gcaagtacttagtaaacgttgtatggaaaagcgaaagaat 86
|||||| |||||||||||| ||||||||||| |||||||
Sbjct: 568 gcaagttcttagtaaacgtcctatggaaaagcaaaagaat 529
>gb|CF488232.1|CF488232 POL1_48_C07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_C07_A002 5', mRNA sequence
Length = 617
Score = 636 bits (321), Expect = 0.0
Identities = 357/369 (96%)
Strand = Plus / Plus
Query: 244 gggctgagcatgcgcctcggcgagggccctacttgatgtactgggagacccacttgaaac 303
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaaac 308
Query: 304 catcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacat 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 309 catcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacat 368
Query: 364 tggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgat 428
Query: 424 accgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 accgtagcccctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaa 488
Query: 484 atggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcag 543
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 489 atggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattctg 548
Query: 544 caaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagt 603
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 549 caaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgtaat 608
Query: 604 aatccttcc 612
|||||||||
Sbjct: 609 aatccttcc 617
Score = 105 bits (53), Expect = 8e-021
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 99 aaattgttttgacgctaaagactcaacatgttcaacaatgttaagcactg-tttttcctc 157
||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct: 113 aaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttcctc 172
Query: 158 ttcataccctccatgat 174
|||||||||||||||||
Sbjct: 173 ttcataccctccatgat 189
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 47 gcaagtacttagtaaacgttgtatggaaaagcgaaagaat 86
|||||| |||||||||||| ||||||||||| |||||||
Sbjct: 50 gcaagttcttagtaaacgtcctatggaaaagcaaaagaat 89
>gb|CF486265.1|CF486265 POL1_36_E11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_E11_A002 5', mRNA sequence
Length = 479
Score = 597 bits (301), Expect = e-169
Identities = 408/444 (91%), Gaps = 15/444 (3%)
Strand = Plus / Minus
Query: 587 atcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtc 646
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 479 atcaacctttgcgtaataatccttccagacgcggcgagcgatctggtggccgccgaggtc 420
Query: 647 gaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcgg 706
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 419 gaaggccttgaacttgatcttgccgatgctgagctcttccgacgtcgggtgctgcgtcgg 360
Query: 707 ctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgtt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgtt 300
Query: 767 gtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcac 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcac 240
Query: 827 cccgtagaaccagtcccagaggaacatctcccccacccgccctgctgcgcctccctcctc 886
|||||||||||||||||| ||||||||||| ||| || |||||| |||||||||||||||
Sbjct: 239 cccgtagaaccagtcccacaggaacatctcgccctccggccctgntgcgcctccctcctc 180
Query: 887 ------------ctcctggagcctctacgcctgactttgtcgcgcggaatcccagagagg 934
||||||||||||||||||||| ||| |||||| ||||| |||||
Sbjct: 179 ctcctcctcctcctcctggagcctctacgcctgccttcctcgcgc---ctcccaaagagg 123
Query: 935 gcggcggcggagatcgctgcgatctgggggttggtggtgggagaggaaaccgaggagaga 994
||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||||
Sbjct: 122 gcggcggcggagatcaccgggatctgagggttggtggtgggagaggaaaccgaggagagg 63
Query: 995 gggatgcggatgtgtgtggatctg 1018
|||| |||||||||||||||||||
Sbjct: 62 gggacgcggatgtgtgtggatctg 39
>gb|CF485333.1|CF485333 POL1_30_H05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H05_A002 5', mRNA sequence
Length = 520
Score = 579 bits (292), Expect = e-163
Identities = 400/436 (91%), Gaps = 15/436 (3%)
Strand = Plus / Minus
Query: 595 ttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgcct 654
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 520 ttgcgtaataatccttccagacgcggcgagcgatctggtggccgccgaggtcgaaggcct 461
Query: 655 tgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgct 714
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 460 tgaacttgatcttgccgatgctgagctcttccgacgtcgggtgctgcgtcggctggtgct 401
Query: 715 gcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggc 774
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 400 gcaccaaccgctcgtccttgagcatgtggaacagcgtggtcttgccggcgttgtcgaggc 341
Query: 775 caaggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtaga 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caaggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtaga 281
Query: 835 accagtcccagaggaacatctcccccacccgccctgctgcgcctccctcctcc------- 887
|||||||||| ||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 280 accagtcccacaggaacatctcgccctccggccctgctgcgcctccctcctcctcctcct 221
Query: 888 -----tcctggagcctctacgcctgactttgtcgcgcggaatcccagagagggcggcggc 942
|||||||||||||||||||| ||| |||||| ||||| |||||||||||||
Sbjct: 220 cctcctcctggagcctctacgcctgccttcctcgcgc---ctcccaaagagggcggcggc 164
Query: 943 ggagatcgctgcgatctgggggttggtggtgggagaggaaaccgaggagagagggatgcg 1002
||||||| | | |||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct: 163 ggagatcaccgggatctgagggttggtggtgggagaggaaaccgaggagagggggacgcg 104
Query: 1003 gatgtgtgtggatctg 1018
||||||||||||||||
Sbjct: 103 gatgtgtgtggatctg 88
>gb|BG240142.1|BG240142 OV1_18_D09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 427
Score = 521 bits (263), Expect = e-146
Identities = 361/394 (91%), Gaps = 15/394 (3%)
Strand = Plus / Minus
Query: 637 cgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggt 696
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 427 cgccgaggtcgaaggccttgaacttgatcttgccgatgctgagctcttccgacgtcgggt 368
Query: 697 gctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtct 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtct 308
Query: 757 tgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgaggg 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgaggg 248
Query: 817 aggccagcaccccgtagaaccagtcccagaggaacatctcccccacccgccctgctgcgc 876
|||||||||||||||||||||||||||| ||||||||||| ||| || |||||| |||||
Sbjct: 247 aggccagcaccccgtagaaccagtcccacaggaacatctcgccctccggccctgntgcgc 188
Query: 877 ctccctcc------------tcctcctggagcctctacgcctgactttgtcgcgcggaat 924
|||||||| ||||||||||||||||||||||| ||| |||||| |
Sbjct: 187 ctccctcctcctcctcctcctcctcctggagcctctacgcctgccttcctcgcgc---ct 131
Query: 925 cccagagagggcggcggcggagatcgctgcgatctgggggttggtggtgggagaggaaac 984
|||| |||||||||||||||||||| | | |||||| |||||||||||||||||||||||
Sbjct: 130 cccaaagagggcggcggcggagatcaccgggatctgagggttggtggtgggagaggaaac 71
Query: 985 cgaggagagagggatgcggatgtgtgtggatctg 1018
||||||||| |||| |||||||||||||||||||
Sbjct: 70 cgaggagagggggacgcggatgtgtgtggatctg 37
>gb|CF488150.1|CF488150 POL1_48_C07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_C07_A002 3', mRNA sequence
Length = 627
Score = 507 bits (256), Expect = e-142
Identities = 291/304 (95%)
Strand = Plus / Plus
Query: 580 ctacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgc 639
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 ctacagcatcaacctttgcgtaataatccttccagacgcggcgagcgatctggtggccgc 60
Query: 640 cgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgct 699
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61 cgaggtcgaaggccttgaacttgatcttgccgatgctgagctcttccgacgtcgggtgct 120
Query: 700 gcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgc 180
Query: 760 cggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggagg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggagg 240
Query: 820 ccagcaccccgtagaaccagtcccagaggaacatctcccccacccgccctgctgcgcctc 879
||||||||||||||||||||||||| ||||||||||| ||| || ||| || || || ||
Sbjct: 241 ccagcaccccgtagaaccagtcccacaggaacatctcgccctccggccntgntgngcntc 300
Query: 880 cctc 883
||||
Sbjct: 301 cctc 304
Score = 56.0 bits (28), Expect = 7e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 880 cctcctcctcctggagcctctacgcctg 907
||||||||||||||||||||||||||||
Sbjct: 315 cctcctcctcctggagcctctacgcctg 342
>gb|BG559243.1|BG559243 RHIZ2_52_D10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 561
Score = 446 bits (225), Expect = e-123
Identities = 461/537 (85%), Gaps = 2/537 (0%)
Strand = Plus / Minus
Query: 321 ttgcgaacaacactgcacatgaagacctcaagtggacggacattggagtc-gccaaggtt 379
||||| || |||||||||||||||| ||| || || || || |||||||| |||||| ||
Sbjct: 561 ttgcgcaccacactgcacatgaagatctccagggggcgaacgttggagtcagccaag-tt 503
Query: 380 gaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttc 439
|| ||||||||||| |||||||||||||| ||||| |||| ||||| || ||||| ||
Sbjct: 502 cacgttgcccttccccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctc 443
Query: 440 agaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaa 499
|| || || |||||||| |||||||||||||| || ||||| || ||||| || || |
Sbjct: 442 tgaagccgcgtatgggatgtcaatcttgttgcccagtatgaggaaaggaacgtttgcaag 383
Query: 500 agaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatc 559
|| ||||| | || |||||||| ||||| |||||||| || ||||| || ||||| ||
Sbjct: 382 ggagtcatctgctagaagagcatcaagctctttctttgactcggcaaaccgttccttgtc 323
Query: 560 atatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcg 619
| ||||| |||| ||| || |||||||||||||| |||||||| |||||||| |||||
Sbjct: 322 aacagcatccaccaagtacacaacagcatcaaccttggcgtagtagtccttccagacgcg 263
Query: 620 gcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgag 679
||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 262 gcgggcgatctggtggcccccgaggtcgaacgccttgaacttgatcctgccgatgctcag 203
Query: 680 ctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcat 739
||| || |||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 202 ctcttctgacgtcgggtactgcgtcggctggtgctgcacgagccgctcgtccttgagcat 143
Query: 740 gtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctcctt 799
|||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 142 gtggaggagggtggtcttgccggcgttgtcgaggccgaggaagaggatcttcgcctcctt 83
Query: 800 ctgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatctc 856
||||||||| || || || |||||||||||||||||||||||| |||||||||||
Sbjct: 82 ctgccacagcccaagcgacgccagcaccccgtagaaccagtccaccaggaacatctc 26
>gb|CL169616.1|CL169616 104_368_10812763_148_31808_235 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10812763, DNA
sequence
Length = 715
Score = 424 bits (214), Expect = e-117
Identities = 229/234 (97%)
Strand = Plus / Plus
Query: 361 cattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggt 60
Query: 421 gataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatga 120
Query: 481 gaaatggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttgatt 540
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 gaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgatt 180
Query: 541 cagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaacct 594
| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacct 234
>gb|BG560491.1|BG560491 RHIZ2_75_B03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 481
Score = 404 bits (204), Expect = e-111
Identities = 393/456 (86%)
Strand = Plus / Minus
Query: 401 gaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatc 460
||||||||| ||||| |||| ||||| || ||||| || || || || |||||||| ||
Sbjct: 481 gaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtatgggatgtc 422
Query: 461 aatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagc 520
|||||||||||| || ||||| || ||||| || || | || ||||| | || |||||
Sbjct: 421 aatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctgctagaagagc 362
Query: 521 atcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccaggtatac 580
||| ||||| |||||||| || ||||| || ||||| ||| ||||| |||| ||| ||
Sbjct: 361 atcaagctctttctttgactcggcaaaccgttccttgtcaacagcatccaccaagtacac 302
Query: 581 tacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgcc 640
|||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| ||
Sbjct: 301 aacagcatcaaccttggcgtagtagtccttccagacgcggcgggcgatctggtggccccc 242
Query: 641 gaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctg 700
||||||||||||||||||||||||| |||||||||| ||||| || |||||||||| |||
Sbjct: 241 gaggtcgaacgccttgaacttgatcctgccgatgctcagctcttctgacgtcgggtactg 182
Query: 701 cgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgcc 760
|||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||
Sbjct: 181 cgtcggctggtgctgcacgagccgctcgtccttgagcatgtggaggagggtggtcttgcc 122
Query: 761 ggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggc 820
||||||||||||||| |||||||||||||| ||||||||||||||||| || || || ||
Sbjct: 121 ggcgttgtcgaggccgaggaagaggatcttcgcctccttctgccacagcccaagcgacgc 62
Query: 821 cagcaccccgtagaaccagtcccagaggaacatctc 856
|||||||||||||||||||||| |||||||||||
Sbjct: 61 cagcaccccgtagaaccagtccaccaggaacatctc 26
>gb|CN128667.1|CN128667 RHOH1_30_H05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_H05_A002 5', mRNA sequence
Length = 841
Score = 402 bits (203), Expect = e-110
Identities = 476/567 (83%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 708 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 649
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 648 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 589
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 588 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 529
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 528 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 469
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 468 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 409
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 408 tagaccactgcatccaccttggcatagtaatccttccaaacacggcgagcaatctgatgt 349
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 348 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 289
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtc 755
| ||| || ||||| ||||| ||||| | ||| ||||||||||||||||| |||||||||
Sbjct: 288 tactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggaggagcgtggtc 229
Query: 756 ttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagg 815
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 228 ttgccggcgttgtcgaggccgaggaagaggatcttggcctccttctgccacagccccagc 169
Query: 816 gaggccagcaccccgtagaaccagtcc 842
|| ||||||||||||||||||||||||
Sbjct: 168 gacgccagcaccccgtagaaccagtcc 142
>gb|BG357807.1|BG357807 OV2_30_E07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 369
Score = 400 bits (202), Expect = e-109
Identities = 299/332 (90%), Gaps = 15/332 (4%)
Strand = Plus / Minus
Query: 699 tgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttg 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttg 310
Query: 759 ccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggag 818
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 309 ccggcgttgtcgaggccaaggaagaggatcttggcctctttctgccacaggccgagggag 250
Query: 819 gccagcaccccgtagaaccagtcccagaggaacatctcccccacccgccctgctgcgcct 878
|||||||||||||||||||||||||| ||||||||||| ||| || ||| || |||||||
Sbjct: 249 gccagcaccccgtagaaccagtcccacaggaacatctcgccctccggccntgntgcgcct 190
Query: 879 ccctcc------------tcctcctggagcctctacgcctgactttgtcgcgcggaatcc 926
|||||| ||||||||||||||||||||||| ||| |||||| |||
Sbjct: 189 ccctcctcctcctcctcctcctcctggagcctctacgcctgccttcctcgcgc---ctcc 133
Query: 927 cagagagggcggcggcggagatcgctgcgatctgggggttggtggtgggagaggaaaccg 986
|| |||||||||||||||||||| | | |||||| |||||||||||||||||||||||||
Sbjct: 132 caaagagggcggcggcggagatcaccgggatctgagggttggtggtgggagaggaaaccg 73
Query: 987 aggagagagggatgcggatgtgtgtggatctg 1018
||||||| |||| |||||||||||||||||||
Sbjct: 72 aggagagggggacgcggatgtgtgtggatctg 41
>gb|CN144473.1|CN144473 WOUND1_22_C06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_C06_A002 5', mRNA sequence
Length = 863
Score = 394 bits (199), Expect = e-108
Identities = 475/567 (83%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 713 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 654
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 653 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 594
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| | || | |||||| || || ||||| || || || ||||| |||
Sbjct: 593 gtggtgaagttgctcaaccccatgtgataacggagttcctcctctgaagcggcataaggg 534
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 533 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 474
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 473 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 414
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 413 tagaccactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgt 354
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 353 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 294
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtc 755
| ||| || ||||| ||||| ||||| | ||| ||||||||||||||||| |||||||||
Sbjct: 293 tactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggaggagcgtggtc 234
Query: 756 ttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagg 815
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 233 ttgccggcgttgtcgaggccgaggaagaggatcttggcctccttctgccacagccccagc 174
Query: 816 gaggccagcaccccgtagaaccagtcc 842
|| ||||||||||||||||||||||||
Sbjct: 173 gacgccagcaccccgtagaaccagtcc 147
>gb|CF770146.1|CF770146 DSBF1_6_A09.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_6_A09_A010 5', mRNA sequence
Length = 503
Score = 392 bits (198), Expect = e-107
Identities = 393/458 (85%)
Strand = Plus / Minus
Query: 399 gtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgggata 458
||||||||||| ||||| |||| ||||| || ||||| || || || || ||||||||
Sbjct: 503 gtgaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtatgggatg 444
Query: 459 tcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacaggaga 518
|||||||||||||| || ||||| || ||||| || || | || ||||| | || ||
Sbjct: 443 tcaatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctgctagaagc 384
Query: 519 gcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccaggtat 578
||||| ||||| |||||||| || ||||| || ||||| ||| ||||| |||| |||
Sbjct: 383 gcatcaagctctttctttgactcggcaaaccgttccttgtcaacagcatccaccaagtac 324
Query: 579 actacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccg 638
|| |||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 323 acaacagcatcaaccttggcgtagtagtccttccagacgcggcgggcgatctggtggccc 264
Query: 639 ccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgc 698
||||||||||| ||||||||||||||| |||||||||| ||||| || |||||||||| |
Sbjct: 263 ccgaggtcgaaagccttgaacttgatcctgccgatgctcagctcttctgacgtcgggtac 204
Query: 699 tgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttg 758
|||||||||||||||||||| | |||||||||||||||||||||||| || |||||||||
Sbjct: 203 tgcgtcggctggtgctgcacgagccgctcgtccttgagcatgtggaggagggtggtcttg 144
Query: 759 ccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggag 818
||||||||||||||||| |||||||||||||| ||||||||||||||||| || || ||
Sbjct: 143 ccggcgttgtcgaggccgaggaagaggatcttcgcctccttctgccacagcccaagcgac 84
Query: 819 gccagcaccccgtagaaccagtcccagaggaacatctc 856
|||||||||||||||||||||||| |||||||||||
Sbjct: 83 gccagcaccccgtagaaccagtccaccaggaacatctc 46
>gb|CF488544.1|CF488544 POL1_50_D11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_D11_A002 5', mRNA sequence
Length = 613
Score = 361 bits (182), Expect = 8e-098
Identities = 460/546 (84%), Gaps = 5/546 (0%)
Strand = Plus / Minus
Query: 312 tagcccatcttgcgaacaacactgcacatgaagacctcaagtggacggacattggagtc- 370
|||||||||||||| || |||||||||||||||| ||| || || || |||||||| ||
Sbjct: 612 tagcccatcttgcgcaccacactgcacatgaagatctccagggggcgaacattggaatca 553
Query: 371 gccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtag 430
|||||| || || ||||||||||| |||||||||||||| ||||| |||| ||||| ||
Sbjct: 552 gccaag-ttcacgttgcccttccccgttgtgaagttgctcaggccaaggtagtaccgcag 494
Query: 431 ctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaac 490
||||| || || || || |||||||| |||||||||||||| || ||||| || |||||
Sbjct: 493 ttcctcctctgaagccgcgtatgggatgtcaatcttgttgcccagcatgaggaaaggaac 434
Query: 491 attggccaaagaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcg 550
|| || | || ||||| | || || ||||| ||||| |||||||| || ||||| ||
Sbjct: 433 gtttgcaagggagtcatctgctagaagcgcatcaagctctttctttgactcggcaaaccg 374
Query: 551 ctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagtaatcctt 610
||||| ||| ||||| |||| ||| || |||||||||||||| |||||||| |||||
Sbjct: 373 ttccttgtcaacagcatccaccaagtacacaacagcatcaaccttggcgtagtagtcctt 314
Query: 611 ccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgcc 670
||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 313 ccagacgcggcgggcgatctggtggcccccgaggtcgaaggccttgaacttgatcctgcc 254
Query: 671 gatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtc 730
|||||| ||||| || |||||||||| ||||||||||||||| | |||||||||
Sbjct: 253 gatgctcagctcttctgacgtcgggtaaaaaa-cggctggtgctgcacgagccgctcgtc 195
Query: 731 cttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatctt 790
|| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 194 ct-gagcatgtggaggagggtggtcttgccggcgttgtcgaggccgaggaagaggatctt 136
Query: 791 ggcctccttctgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaa 850
||||||||| ||||||| || || || |||||||||||||||||||||||| |||||
Sbjct: 135 cgcctccttc-gccacagcccaagcgacgccagcaccccgtagaaccagtccaccaggaa 77
Query: 851 catctc 856
||||||
Sbjct: 76 catctc 71
>gb|BF318007.1|BF318007 OV1_10_F06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 399
Score = 355 bits (179), Expect = 5e-096
Identities = 251/275 (91%)
Strand = Plus / Minus
Query: 582 acagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccg 641
|||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||
Sbjct: 396 acagcatcaaccttggcgtagtagtccttccagacgcggcgggcgatctggtggcccccg 337
Query: 642 aggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgc 701
|||||||| ||||||||||||||| |||||||||| ||||| || |||||||||| ||||
Sbjct: 336 aggtcgaaggccttgaacttgatcctgccgatgctcagctcttctgacgtcgggtactgc 277
Query: 702 gtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccg 761
||||||||||||||||| | |||||||||||||||||||||||| || ||||||||||||
Sbjct: 276 gtcggctggtgctgcacgagccgctcgtccttgagcatgtggaggagggtggtcttgccg 217
Query: 762 gcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggcc 821
|||||||||||||| |||||||||||||| ||||||||||||||||| || || || |||
Sbjct: 216 gcgttgtcgaggccgaggaagaggatcttcgcctccttctgccacagcccaagcgacgcc 157
Query: 822 agcaccccgtagaaccagtcccagaggaacatctc 856
||||||||||||||||||||| |||||||||||
Sbjct: 156 agcaccccgtagaaccagtccaccaggaacatctc 122
>gb|BE361076.1|BE361076 DG1_69_B08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 584
Score = 329 bits (166), Expect = 3e-088
Identities = 397/474 (83%)
Strand = Plus / Minus
Query: 369 tcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgt 428
||||| ||||| ||||||||||| || || ||||||||||| || || | |||||| ||
Sbjct: 560 tcgcccaggttaaccttgcccttgccagtggtgaagttgctcagccccatgtgataacgg 501
Query: 429 agctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaaatgga 488
|| ||||| || || || ||||| ||||| || |||||||| || ||||| || |||||
Sbjct: 500 agttcctcctctgaagcggcataagggatgtcgatcttgttccccaggatcaggaatggg 441
Query: 489 acattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcagcaaat 548
||| |||||| || ||||| || ||||| ||||| |||||||||||||| ||||||||
Sbjct: 440 acagtggccagggagtcatctgataggagcgcatctagctccttctttgactcagcaaac 381
Query: 549 cgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagtaatcc 608
|||||||| ||||| ||||| || ||||| || || ||||| ||||| || |||||||||
Sbjct: 380 cgctccttgtcataggcatccacaaggtagaccactgcatccaccttagcatagtaatcc 321
Query: 609 ttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttg 668
||||| || ||||| || ||||| || || || | || || |||||||||||||||||
Sbjct: 320 ttccaaacacggcgagcaatctgatgtcctcctaaatcaaatgccttgaacttgatcttc 261
Query: 669 ccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcg 728
|||||||| ||||| || || || || | ||| || ||||| ||||| ||||| | |||
Sbjct: 260 ccgatgctcagctcttcagaagttggatactgtgtaggctgatgctggaccaatctctca 201
Query: 729 tccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatc 788
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 200 tccttgagcatgtggaggagcgtggtcttgccggcgttgtcgaggccgaggaagaggatc 141
Query: 789 ttggcctccttctgccacaggccgagggaggccagcaccccgtagaaccagtcc 842
|||||||||||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 140 ttggcctccttctgccacagccccagcgacgccagcaccccgtagaaccagtcc 87
>gb|BE366220.1|BE366220 PI1_31_B08.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 329 bits (166), Expect = 3e-088
Identities = 397/474 (83%)
Strand = Plus / Minus
Query: 369 tcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgt 428
||||| ||||| ||||||||||| || || ||||||||||| || || | |||||| ||
Sbjct: 579 tcgcccaggttaaccttgcccttgccagtggtgaagttgctcagccccatgtgataacgg 520
Query: 429 agctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaaatgga 488
|| ||||| || || || ||||| ||||| || |||||||| || ||||| || |||||
Sbjct: 519 agttcctcctctgaagcggcataagggatgtcgatcttgttccccaggatcaggaatggg 460
Query: 489 acattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcagcaaat 548
||| |||||| || ||||| || ||||| ||||| |||||||||||||| ||||||||
Sbjct: 459 acagtggccagggagtcatctgataggagcgcatctagctccttctttgactcagcaaac 400
Query: 549 cgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagtaatcc 608
|||||||| ||||| ||||| || ||||| || || ||||| ||||| || |||||||||
Sbjct: 399 cgctccttgtcataggcatccacaaggtagaccactgcatccaccttagcatagtaatcc 340
Query: 609 ttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttg 668
||||| || ||||| || ||||| || || || | || || |||||||||||||||||
Sbjct: 339 ttccaaacacggcgagcaatctgatgtcctcctaaatcaaatgccttgaacttgatcttc 280
Query: 669 ccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcg 728
|||||||| ||||| || || || || | ||| || ||||| ||||| ||||| | |||
Sbjct: 279 ccgatgctcagctcttcagaagttggatactgtgtaggctgatgctggaccaatctctca 220
Query: 729 tccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatc 788
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 219 tccttgagcatgtggaggagcgtggtcttgccggcgttgtcgaggccgaggaagaggatc 160
Query: 789 ttggcctccttctgccacaggccgagggaggccagcaccccgtagaaccagtcc 842
|||||||||||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 159 ttggcctccttctgccacagccccagcgacgccagcaccccgtagaaccagtcc 106
>gb|BG739586.1|BG739586 EM1_82_F12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 325 bits (164), Expect = 5e-087
Identities = 392/468 (83%)
Strand = Plus / Minus
Query: 375 aggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcc 434
||||| ||||||||||| || || ||||||||||| || || | |||||| || || |||
Sbjct: 578 aggttaaccttgcccttgccagtggtgaagttgctcagccccatgtgataacggagttcc 519
Query: 435 tcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattg 494
|| || || || ||||| ||||| || |||||||| || ||||| || ||||| ||| ||
Sbjct: 518 tcctctgaagcggcataagggatgtcgatcttgttccccaggatcaggaatgggacagtg 459
Query: 495 gccaaagaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctcc 554
|||| || ||||| || ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 458 gccagggagtcatctgataggagcgcatctagctccttctttgactcagcaaaccgctcc 399
Query: 555 ttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccac 614
|| ||||| ||||| || ||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 398 ttgtcataggcatccacaaggtagaccactgcatccaccttagcatagtaatccttccaa 339
Query: 615 acgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatg 674
|| ||||| || ||||| || || || | || || ||||||||||||||||| ||||||
Sbjct: 338 acacggcgagcaatctgatgtcctcctaaatcaaatgccttgaacttgatcttcccgatg 279
Query: 675 ctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttg 734
|| ||||| || || || || | ||| || ||||| ||||| ||||| | ||| ||||||
Sbjct: 278 ctcagctcttcagaagttggatactgtgtaggctgatgctggaccaatctctcatccttg 219
Query: 735 agcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcc 794
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 218 agcatgtggaggagcgtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcc 159
Query: 795 tccttctgccacaggccgagggaggccagcaccccgtagaaccagtcc 842
|||||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 158 tccttctgccacagccccagcgacgccagcaccccgtagaaccagtcc 111
>gb|BI074813.1|BI074813 IP1_16_G05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 313 bits (158), Expect = 2e-083
Identities = 383/458 (83%)
Strand = Plus / Minus
Query: 385 tgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagagg 444
||||||| || || ||||||||||| || || | |||||| || || ||||| || || |
Sbjct: 567 tgcccttgccagtggtgaagttgctcagccccatgtgataacggagttcctcctctgaag 508
Query: 445 cagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaat 504
| ||||| ||||| || |||||||| || ||||| || ||||| ||| |||||| || |
Sbjct: 507 cggcataagggatgtcgatcttgttccccaggatcaggaatgggacagtggccagggagt 448
Query: 505 catcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatg 564
|||| || ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| |
Sbjct: 447 catctgataggagcgcatctagctccttctttgactcagcaaaccgctccttgtcatagg 388
Query: 565 catctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcg 624
|||| || ||||| || || ||||| ||||| || |||||||||||||| || ||||| |
Sbjct: 387 catccacaaggtagaccactgcatccaccttagcatagtaatccttccaaacacggcgag 328
Query: 625 cgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcct 684
| ||||| || || || | || || ||||||||||||||||| |||||||| ||||| |
Sbjct: 327 caatctgatgtcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctctt 268
Query: 685 ccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtgga 744
| || || || | ||| || ||||| ||||| ||||| | ||| ||||||||||||||||
Sbjct: 267 cagaagttggatactgtgtaggctgatgctggaccaatctctcatccttgagcatgtgga 208
Query: 745 gcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgcc 804
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 207 ggagcgtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctccttctgcc 148
Query: 805 acaggccgagggaggccagcaccccgtagaaccagtcc 842
|||| || || || ||||||||||||||||||||||||
Sbjct: 147 acagccccagcgacgccagcaccccgtagaaccagtcc 110
>gb|CD221256.1|CD221256 CCC1_74_E08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_E08_A007 5', mRNA sequence
Length = 614
Score = 309 bits (156), Expect = 3e-082
Identities = 372/444 (83%)
Strand = Plus / Minus
Query: 399 gtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgggata 458
||||||||||| || || | |||||| || || ||||| || || || ||||| |||||
Sbjct: 607 gtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataagggatg 548
Query: 459 tcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacaggaga 518
|| |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||||
Sbjct: 547 tcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgataggagc 488
Query: 519 gcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccaggtat 578
||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||||
Sbjct: 487 gcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaaggtag 428
Query: 579 actacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccg 638
|| || ||||| ||||| || |||||||||||||| || ||||| || ||||| || ||
Sbjct: 427 accactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgtcct 368
Query: 639 ccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgc 698
|| | || || ||||||||||||||||| |||||||| ||||| || || || || | |
Sbjct: 367 cctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttggatac 308
Query: 699 tgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttg 758
|| || ||||| ||||| ||||| | ||| ||||||||||||||||| ||||||||||||
Sbjct: 307 tgtgtaggctgatgctggaccaatctctcatccttgagcatgtggaggagcgtggtcttg 248
Query: 759 ccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggag 818
||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 247 ccggcgttgtcgaggccgaggaagaggatcttggcctccttctgccacagccccagagac 188
Query: 819 gccagcaccccgtagaaccagtcc 842
||||||||||||||||||||||||
Sbjct: 187 gccagcaccccgtagaaccagtcc 164
>gb|BG411038.1|BG411038 EM1_25_A05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 301 bits (152), Expect = 7e-080
Identities = 335/396 (84%)
Strand = Plus / Minus
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||| ||||| || |||||||| || ||||| || ||||| ||| |||||| || |||
Sbjct: 506 gcataagggatgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtca 447
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
|| || ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| |||
Sbjct: 446 tctgataggagcgcatctagctccttctttgactcagcaaaccgctccttgtcataggca 387
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| || ||||| || || ||||| ||||| || |||||||||||||| || ||||| ||
Sbjct: 386 tccacaaggtagaccactgcatccaccttagcatagtaatccttccaaacacggcgagca 327
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
||||| || || || | || || ||||||||||||||||| |||||||| ||||| ||
Sbjct: 326 atctgatgtcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttca 267
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
|| || || | ||| || ||||| ||||| ||||| | ||| |||||||||||||||||
Sbjct: 266 gaagttggatactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggagg 207
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 206 agcgtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctccttctgccac 147
Query: 807 aggccgagggaggccagcaccccgtagaaccagtcc 842
|| || || || ||||||||||||||||||||||||
Sbjct: 146 agccccagcgacgccagcaccccgtagaaccagtcc 111
>gb|BE366246.1|BE366246 PI1_31_B08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 685
Score = 299 bits (151), Expect = 3e-079
Identities = 409/495 (82%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 495 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 436
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 435 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 376
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 375 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 316
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 315 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 256
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 255 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 196
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 195 tagaccactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgt 136
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 135 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 76
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtc 755
| ||| || ||||| ||||| ||||| | ||| ||||||||||||||||| |||||||||
Sbjct: 75 tactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggaggagcgtggtc 16
Query: 756 ttgccggcgttgtcg 770
|||||||||||||||
Sbjct: 15 ttgccggcgttgtcg 1
>gb|BG739419.1|BG739419 EM1_82_F12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 666
Score = 299 bits (151), Expect = 3e-079
Identities = 409/495 (82%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 495 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 436
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 435 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 376
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 375 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 316
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 315 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 256
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 255 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 196
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 195 tagaccactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgt 136
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 135 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 76
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtc 755
| ||| || ||||| ||||| ||||| | ||| ||||||||||||||||| |||||||||
Sbjct: 75 tactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggaggagcgtggtc 16
Query: 756 ttgccggcgttgtcg 770
|||||||||||||||
Sbjct: 15 ttgccggcgttgtcg 1
>gb|AW745465.1|AW745465 WS1_35_G04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 564
Score = 287 bits (145), Expect = 1e-075
Identities = 333/396 (84%)
Strand = Plus / Minus
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||| ||||| || |||||||| | ||||| || ||||| ||| |||||| || |||
Sbjct: 550 gcataagggatgtcgatcttgttccncaggatcaggaatgggacagtggccagggagtca 491
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
|| || ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| |||
Sbjct: 490 tctgataggagcgcatctagctccttctttgactcagcaaaccgctccttgtcataggca 431
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| || ||||| || || ||||| ||||| || |||||||||||||| || ||||| ||
Sbjct: 430 tccacaaggtagaccactgcatccaccttagcatagtaatccttccaaacacggcgagca 371
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
||||| || || || | || || ||||||||||||||||| |||||||| ||||| ||
Sbjct: 370 atctgatgtcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttca 311
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
| || || | ||| || ||||| ||||| ||||| | ||| |||||||||||||||||
Sbjct: 310 ggagttggatactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggagg 251
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 250 agcgtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctccttctgccac 191
Query: 807 aggccgagggaggccagcaccccgtagaaccagtcc 842
|| || || || ||||||||||||||||||||||||
Sbjct: 190 agccccagcgacgccagcaccccgtagaaccagtcc 155
>gb|CN144412.1|CN144412 WOUND1_22_C06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_C06_A002 3', mRNA sequence
Length = 720
Score = 287 bits (145), Expect = 1e-075
Identities = 406/493 (82%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 493 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 434
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 433 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 374
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| | || | |||||| || || ||||| || || || ||||| |||
Sbjct: 373 gtggtgaagttgctcaaccccatgtgataacggagttcctcctctgaagcggcataaggg 314
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 313 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 254
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 253 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 194
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 193 tagaccactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgt 134
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 133 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 74
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtc 755
| ||| || ||||| ||||| ||||| | ||| ||||||||||||||||| |||||||||
Sbjct: 73 tactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggaggagcgtggtc 14
Query: 756 ttgccggcgttgt 768
|||||||||||||
Sbjct: 13 ttgccggcgttgt 1
>gb|BG556775.1|BG556775 EM1_38_D10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 585
Score = 280 bits (141), Expect = 2e-073
Identities = 366/441 (82%)
Strand = Plus / Minus
Query: 402 aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatca 461
|||||||| || || | |||||| || || ||||| || || || ||||| ||||| ||
Sbjct: 585 aagttgctcagccccatgtgataacggagttcctcctctgaagcggcataagggatgtcg 526
Query: 462 atcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagca 521
|||||||| || ||||| || ||||| ||| |||||| || ||||| || ||||| |||
Sbjct: 525 atcttgttccccaggatcaggaatgggacagtggccagggagtcatctgataggagcgca 466
Query: 522 tcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccaggtatact 581
|| |||||||||||||| |||||||| |||||||| ||||| ||||| || ||||| ||
Sbjct: 465 tctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaaggtagacc 406
Query: 582 acagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccg 641
| ||||| ||||| || |||||||||||||| || ||||| || ||||| || || ||
Sbjct: 405 cctgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgtcctcct 346
Query: 642 aggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgc 701
| || || ||||||||||||||||| |||||||| ||||| || || || || | |||
Sbjct: 345 aaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttggatactgt 286
Query: 702 gtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccg 761
|| ||||| ||||| ||||| | ||| ||||||||||||||||| |||||||||| ||||
Sbjct: 285 gtaggctgatgctggaccaatctctcatccttgagcatgtggaggagcgtggtctcgccg 226
Query: 762 gcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggcc 821
|||| ||||||||| |||||||||||||||||||||||||||||||| || || || |||
Sbjct: 225 gcgtagtcgaggccgaggaagaggatcttggcctccttctgccacagccccagcgacgcc 166
Query: 822 agcaccccgtagaaccagtcc 842
|||||||||||||||||||||
Sbjct: 165 agcaccccgtagaaccagtcc 145
>gb|BG932934.1|BG932934 DG1_69_B08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 268 bits (135), Expect = 9e-070
Identities = 393/479 (82%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 479 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 420
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 419 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 360
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 359 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 300
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 299 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 240
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 239 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 180
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 179 tagaccactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgt 120
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 119 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 60
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggt 754
| ||| || ||||| ||||| ||||| | ||| ||||||||||||||||| ||||||||
Sbjct: 59 tactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggaggagcgtggt 1
>gb|BG560132.1|BG560132 RHIZ2_69_G02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 251
Score = 258 bits (130), Expect = 9e-067
Identities = 200/221 (90%), Gaps = 3/221 (1%)
Strand = Plus / Minus
Query: 639 ccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgc 698
||||||||||||||||||||||||||| |||||||||| ||||| || |||||||||| |
Sbjct: 246 ccgaggtcgaacgccttgaacttgatcctgccgatgctcagctcttctgacgtcgggtac 187
Query: 699 tgcgtcggctggtgctgcaccaaccgctcgtcc--ttga-gcatgtggagcagcgtggtc 755
|||||||||||||||||||| | |||||||||| |||| |||||||||| || ||||||
Sbjct: 186 tgcgtcggctggtgctgcacgagccgctcgtccccttgacgcatgtggaggagggtggtc 127
Query: 756 ttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagg 815
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||
Sbjct: 126 ttgccggcgttgtcgaggccgaggaagaggatcttcgcctccttctgccacagcccaagc 67
Query: 816 gaggccagcaccccgtagaaccagtcccagaggaacatctc 856
|| |||||||||||||||||||||||| |||||||||||
Sbjct: 66 gacgccagcaccccgtagaaccagtccaccaggaacatctc 26
>gb|AW678236.1|AW678236 WS1_14_H05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 435
Score = 250 bits (126), Expect = 2e-064
Identities = 258/302 (85%)
Strand = Plus / Minus
Query: 541 cagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgt 600
||||||| |||||||| ||||| ||||| || ||||| || || ||||| ||||| || |
Sbjct: 435 cagcaaaccgctccttgtcataggcatccacaaggtagaccactgcatccaccttagcat 376
Query: 601 agtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaact 660
||||||||||||| || ||||| || ||||| || || || | || || ||||||||||
Sbjct: 375 agtaatccttccaaacacggcgagcaatctgatgtcctcctaaatcaaatgccttgaact 316
Query: 661 tgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcacca 720
||||||| |||||||| ||||| || || || || | ||| || ||||| ||||| ||||
Sbjct: 315 tgatcttcccgatgctcagctcttcagaagttggatactgtgtaggctgatgctggacca 256
Query: 721 accgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaagga 780
| | ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 255 atctctcatccttgagcatgtggaggagcgtggtcttgccggcgttgtcgaggccgagga 196
Query: 781 agaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagaaccagt 840
|||||||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 195 agaggatcttggcctccttctgccacagccccagcgacgccagcaccccgtagaaccagt 136
Query: 841 cc 842
||
Sbjct: 135 cc 134
>gb|BI074494.1|BI074494 IP1_16_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 655
Score = 244 bits (123), Expect = 1e-062
Identities = 378/463 (81%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 463 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 404
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 403 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 344
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 343 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 284
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 283 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 224
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 223 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 164
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 163 tagaccactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgt 104
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 103 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 44
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagca 738
| ||| || ||||| ||||| ||||| | ||| ||||||||||
Sbjct: 43 tactgtgtaggctgatgctggaccaatctctcatccttgagca 1
>gb|BG410710.1|BG410710 EM1_25_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 242 bits (122), Expect = 5e-062
Identities = 377/462 (81%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 462 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 403
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 402 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 343
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 342 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 283
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 282 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 223
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 222 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 163
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 162 tagaccactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgt 103
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 102 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 43
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagc 737
| ||| || ||||| ||||| ||||| | ||| |||||||||
Sbjct: 42 tactgtgtaggctgatgctggaccaatctctcatccttgagc 1
>gb|CD221229.1|CD221229 CCC1_74_E08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_E08_A007 3', mRNA sequence
Length = 607
Score = 236 bits (119), Expect = 3e-060
Identities = 335/407 (82%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 410 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 351
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 350 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 291
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 290 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 231
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 230 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 171
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 170 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 111
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 110 tagaccactgcatccaccttagcatagtaatccttccaaacacggcgagcaatctgatgt 51
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctc 682
|| || | || || ||||||||||||||||| |||||||| |||||
Sbjct: 50 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctc 4
>gb|CN128576.1|CN128576 RHOH1_30_H05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_H05_A002 3', mRNA sequence
Length = 662
Score = 234 bits (118), Expect = 1e-059
Identities = 382/470 (81%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 470 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 411
Query: 336 cacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccg 395
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 410 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 351
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
| ||||||||||| || || | |||||| || || ||||| || || || ||||| ||
Sbjct: 350 atggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaagg 291
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| || |||||||| || ||||| || ||||| ||| |||||| || ||||| || |||
Sbjct: 290 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 231
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 230 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataagcatccacaagg 171
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|| || || ||||| ||||| || |||||||||||||| || ||| | || ||||| ||
Sbjct: 170 taaaccactgcatccaccttggcatagtaatccttccaaacacggagagcaatctgatgt 111
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|| || | || || ||||||||||||||||| |||||||| ||||| || || || ||
Sbjct: 110 cctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcttcagaagttgga 51
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggag 745
| ||| || ||||| ||||| ||||| | ||| |||||||||||||||||
Sbjct: 50 tactgtgtaggctgatgctggaccaatctctcatccttgagcatgtggag 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 397,463
Number of Sequences: 832831
Number of extensions: 397463
Number of successful extensions: 114083
Number of sequences better than 0.5: 106
Number of HSP's better than 0.5 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113783
Number of HSP's gapped (non-prelim): 231
length of query: 1019
length of database: 491,359,669
effective HSP length: 20
effective length of query: 999
effective length of database: 474,703,049
effective search space: 474228345951
effective search space used: 474228345951
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)