BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440958.2.1
(791 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD235375.1|CD235375 SS1_29_H10.b1_A012 Salt-stressed see... 339 2e-091
gb|CX622109.1|CX622109 GABR1_62_C09.b2_A002 GA- or brassino... 327 9e-088
gb|CN149045.1|CN149045 WOUND1_60_H10.b1_A002 Wounded leaves... 311 5e-083
gb|AW923055.1|AW923055 DG1_48_G01.g1_A002 Dark Grown 1 (DG1... 309 2e-082
gb|CN146677.1|CN146677 WOUND1_43_B07.b1_A002 Wounded leaves... 305 3e-081
gb|CX618728.1|CX618728 GABR1_41_G07.b1_A002 GA- or brassino... 301 5e-080
gb|CN150018.1|CN150018 WOUND1_66_H09.b1_A002 Wounded leaves... 293 1e-077
gb|CF433158.1|CF433158 NIT1_25_E08.b1_A002 Nitrogen-deficie... 281 5e-074
gb|CD234204.1|CD234204 SS1_26_B02.b1_A012 Salt-stressed see... 276 3e-072
gb|CN150014.1|CN150014 WOUND1_66_H05.b1_A002 Wounded leaves... 274 1e-071
gb|CF431162.1|CF431162 NIT1_6_C08.b1_A002 Nitrogen-deficien... 266 3e-069
gb|CN145288.1|CN145288 WOUND1_28_A10.b2_A002 Wounded leaves... 262 4e-068
gb|CN141678.1|CN141678 WOUND1_1_E01.b1_A002 Wounded leaves ... 258 7e-067
gb|CN124677.1|CN124677 RHOH1_6_F06.b1_A002 Acid- and alkali... 246 3e-063
gb|CN141999.1|CN141999 WOUND1_3_E12.b1_A002 Wounded leaves ... 228 6e-058
gb|CW364958.1|CW364958 fsbb001f037d22f0 Sorghum methylation... 226 2e-057
gb|CL152122.1|CL152122 104_335_10779735_116_31364_135 Sorgh... 224 1e-056
gb|CL152965.1|CL152965 104_337_10780377_116_31368_009 Sorgh... 224 1e-056
gb|CW124854.1|CW124854 104_504_11112012_116_34706_034 Sorgh... 224 1e-056
gb|CW255681.1|CW255681 104_720_11226371_148_35403_042 Sorgh... 224 1e-056
gb|CD236143.1|CD236143 SS1_32_H03.b1_A012 Salt-stressed see... 218 6e-055
gb|CN148575.1|CN148575 WOUND1_57_A09.g1_A002 Wounded leaves... 210 1e-052
gb|CN150772.1|CN150772 WOUND1_71_H03.b1_A002 Wounded leaves... 194 9e-048
gb|CW097149.1|CW097149 104_463_11002295_116_34344_094 Sorgh... 182 3e-044
gb|BF421814.1|BF421814 FM1_11_C04.g1_A003 Floral-Induced Me... 174 8e-042
gb|CN150866.1|CN150866 WOUND1_72_A06.b1_A002 Wounded leaves... 172 3e-041
gb|AI723825.1|AI723825 RHIZ1_12_H04.y1_A001 Rhizome1 (RHIZ1... 151 1e-034
gb|CN143623.1|CN143623 WOUND1_17_H12.b1_A002 Wounded leaves... 133 3e-029
gb|CW125845.1|CW125845 104_506_11112559_116_34722_028 Sorgh... 127 2e-027
gb|CN149132.1|CN149132 WOUND1_60_H10.g1_A002 Wounded leaves... 123 3e-026
gb|CN124765.1|CN124765 RHOH1_6_F06.g1_A002 Acid- and alkali... 119 4e-025
gb|CN144107.1|CN144107 WOUND1_20_E12.b1_A002 Wounded leaves... 119 4e-025
gb|CN144667.1|CN144667 WOUND1_23_F05.g1_A002 Wounded leaves... 119 4e-025
gb|CN148282.1|CN148282 WOUND1_55_G06.b1_A002 Wounded leaves... 119 4e-025
gb|CN150569.1|CN150569 WOUND1_70_C05.b1_A002 Wounded leaves... 119 4e-025
gb|CN151544.1|CN151544 WOUND1_76_C11.b1_A002 Wounded leaves... 119 4e-025
gb|CN142079.1|CN142079 WOUND1_3_E12.g1_A002 Wounded leaves ... 115 6e-024
gb|CN150048.1|CN150048 WOUND1_66_C07.g1_A002 Wounded leaves... 115 6e-024
gb|BG102714.1|BG102714 RHIZ2_36_D11.g1_A003 Rhizome2 (RHIZ2... 111 1e-022
gb|CF433215.1|CF433215 NIT1_25_E08.g1_A002 Nitrogen-deficie... 111 1e-022
gb|BZ338207.1|BZ338207 ia93g08.b1 WGS-SbicolorF (JM107 adap... 105 6e-021
gb|CW092078.1|CW092078 104_454_10998930_116_33041_073 Sorgh... 105 6e-021
gb|CW473754.1|CW473754 fsbb001f229e09k0 Sorghum methylation... 105 6e-021
gb|CN144196.1|CN144196 WOUND1_20_F05.g1_A002 Wounded leaves... 105 6e-021
gb|CN146754.1|CN146754 WOUND1_43_B07.g1_A002 Wounded leaves... 105 6e-021
gb|BG052711.1|BG052711 RHIZ2_28_G08.g1_A003 Rhizome2 (RHIZ2... 103 2e-020
gb|CN148348.1|CN148348 WOUND1_55_G02.g1_A002 Wounded leaves... 103 2e-020
gb|CN151846.1|CN151846 WOUND1_78_C02.b1_A002 Wounded leaves... 103 2e-020
gb|BZ338208.1|BZ338208 ia93g08.g1 WGS-SbicolorF (JM107 adap... 101 1e-019
gb|AI724512.1|AI724512 RHIZ1_37_C02.y1_A001 Rhizome1 (RHIZ1... 98 1e-018
gb|CW108984.1|CW108984 104_480_11097815_116_34493_082 Sorgh... 86 6e-015
gb|CW108985.1|CW108985 104_480_11097815_148_34497_082 Sorgh... 86 6e-015
gb|CW332999.1|CW332999 104_830_11481709_116_36036_049 Sorgh... 86 6e-015
gb|CW214663.1|CW214663 104_646_11194133_116_37048_019 Sorgh... 82 9e-014
gb|CW444933.1|CW444933 fsbb001f166m13k0 Sorghum methylation... 82 9e-014
gb|CW128167.1|CW128167 104_509_11113857_148_34750_037 Sorgh... 80 4e-013
gb|CN147854.1|CN147854 WOUND1_52_E02.g1_A002 Wounded leaves... 80 4e-013
gb|CN143379.1|CN143379 WOUND1_15_H07.g1_A002 Wounded leaves... 72 9e-011
gb|CN146609.1|CN146609 WOUND1_42_A04.g1_A002 Wounded leaves... 72 9e-011
gb|CW209940.1|CW209940 104_640_11189528_116_36996_028 Sorgh... 70 3e-010
gb|CW223611.1|CW223611 104_659_11203008_148_37191_088 Sorgh... 70 3e-010
gb|CW324653.1|CW324653 104_819_11477275_116_35916_076 Sorgh... 70 3e-010
gb|CW347989.1|CW347989 fsbb001f008c13k0 Sorghum methylation... 70 3e-010
gb|AW677325.1|AW677325 DG1_5_C12.g1_A002 Dark Grown 1 (DG1)... 66 5e-009
gb|CW351997.1|CW351997 fsbb001f014a15k0 Sorghum methylation... 64 2e-008
gb|CF427655.1|CF427655 PH1_10_F04.b1_A002 Phosphorous-defic... 64 2e-008
gb|CF429614.1|CF429614 PH1_23_D07.b1_A002 Phosphorous-defic... 64 2e-008
gb|CF432253.1|CF432253 NIT1_15_E06.b1_A002 Nitrogen-deficie... 64 2e-008
gb|CF432260.1|CF432260 NIT1_15_D05.b1_A002 Nitrogen-deficie... 64 2e-008
gb|CN128566.1|CN128566 RHOH1_30_G06.b1_A002 Acid- and alkal... 64 2e-008
gb|CN129718.1|CN129718 RHOH1_37_B03.b1_A002 Acid- and alkal... 64 2e-008
gb|CN130050.1|CN130050 RHOH1_39_A12.b1_A002 Acid- and alkal... 64 2e-008
gb|CN135665.1|CN135665 OX1_38_F05.b1_A002 Oxidatively-stres... 64 2e-008
gb|CX606124.1|CX606124 ANR1_1_F10.b1_A002 Anaerobic roots S... 64 2e-008
gb|CX606431.1|CX606431 ANR1_3_B02.b1_A002 Anaerobic roots S... 64 2e-008
gb|CX606801.1|CX606801 ANR1_5_B12.b1_A002 Anaerobic roots S... 64 2e-008
gb|CX608043.1|CX608043 ANR1_32_F11.b1_A002 Anaerobic roots ... 64 2e-008
gb|CX610703.1|CX610703 ANR1_20_G07.b1_A002 Anaerobic roots ... 64 2e-008
gb|CX614913.1|CX614913 GABR1_17_C07.b1_A002 GA- or brassino... 64 2e-008
gb|CX616691.1|CX616691 GABR1_29_H04.b1_A002 GA- or brassino... 64 2e-008
gb|CX621118.1|CX621118 GABR1_56_D04.b1_A002 GA- or brassino... 64 2e-008
gb|CW063049.1|CW063049 104_308_10521687_1_30092 Sorghum met... 62 8e-008
gb|CW152280.1|CW152280 104_553_11144405_116_36323_023 Sorgh... 62 8e-008
gb|CF431021.1|CF431021 NIT1_4_H02.b1_A002 Nitrogen-deficien... 62 8e-008
gb|CF431998.1|CF431998 NIT1_16_E10.b1_A002 Nitrogen-deficie... 62 8e-008
gb|CF490081.1|CF490081 POL1_62_H01.b1_A002 Pollen Sorghum b... 62 8e-008
gb|CN135321.1|CN135321 OX1_32_B07.b1_A002 Oxidatively-stres... 62 8e-008
gb|CN151211.1|CN151211 WOUND1_74_C10.b1_A002 Wounded leaves... 62 8e-008
gb|CL152121.1|CL152121 104_335_10779735_114_31363_135 Sorgh... 60 3e-007
gb|BG558734.1|BG558734 RHIZ2_59_G10.g1_A003 Rhizome2 (RHIZ2... 60 3e-007
gb|BE596903.1|BE596903 PI1_60_A01.g1_A002 Pathogen induced ... 58 1e-006
gb|CN123882.1|CN123882 RHOH1_1_G06.b1_A002 Acid- and alkali... 58 1e-006
gb|CN150938.1|CN150938 WOUND1_72_A06.g1_A002 Wounded leaves... 58 1e-006
gb|CW245147.1|CW245147 104_706_11220910_148_35077_093 Sorgh... 54 2e-005
gb|CW245148.1|CW245148 104_706_11220910_148_37599_093 Sorgh... 54 2e-005
gb|CW353559.1|CW353559 fsbb001f016f20k0 Sorghum methylation... 54 2e-005
gb|CF429902.1|CF429902 PH1_25_D10.b1_A002 Phosphorous-defic... 54 2e-005
gb|CN129547.1|CN129547 RHOH1_36_B08.b3_A002 Acid- and alkal... 54 2e-005
gb|CX607042.1|CX607042 ANR1_6_H06.b1_A002 Anaerobic roots S... 54 2e-005
gb|CX608050.1|CX608050 ANR1_32_G10.b1_A002 Anaerobic roots ... 54 2e-005
gb|CX620993.1|CX620993 GABR1_55_G09.b1_A002 GA- or brassino... 54 2e-005
gb|CB925746.1|CB925746 ABA1_23_E12.b1_A012 Abscisic acid-tr... 52 8e-005
gb|CW064459.1|CW064459 104_310_10522583_114_30141 Sorghum m... 48 0.001
gb|CW294913.1|CW294913 104_776_11460652_148_35615_016 Sorgh... 48 0.001
gb|CW404977.1|CW404977 fsbb001f097f17k0 Sorghum methylation... 46 0.005
gb|CW392630.1|CW392630 fsbb001f079f09f0 Sorghum methylation... 44 0.019
gb|BG463547.1|BG463547 EM1_49_H04.g1_A002 Embryo 1 (EM1) So... 44 0.019
gb|CW792366.1|CW792366 SP__Ba0092A24.f SP__Ba Sorghum propi... 42 0.076
gb|CD232077.1|CD232077 SS1_38_E04.b1_A012 Salt-stressed see... 42 0.076
gb|CF755720.1|CF755720 DSAF1_1_B02.b1_A011 Drought-stressed... 42 0.076
gb|CF771144.1|CF771144 DSBF1_14_E10.g1_A010 Drought-stresse... 42 0.076
gb|CN148351.1|CN148351 WOUND1_55_G06.g1_A002 Wounded leaves... 42 0.076
gb|BZ337350.1|BZ337350 ia86g10.b1 WGS-SbicolorF (JM107 adap... 40 0.30
gb|BZ626636.1|BZ626636 ih47e02.b1 WGS-SbicolorF (DH5a methy... 40 0.30
gb|CL157132.1|CL157132 104_344_10783336_116_31374_280 Sorgh... 40 0.30
gb|CL161784.1|CL161784 104_353_10805958_116_31829_246 Sorgh... 40 0.30
gb|CL171572.1|CL171572 104_373_10889516_148_31776_188 Sorgh... 40 0.30
gb|CW048139.1|CW048139 104_286_10513155_115_30215 Sorghum m... 40 0.30
gb|CW110992.1|CW110992 104_484_11104049_148_34525_077 Sorgh... 40 0.30
gb|CW146757.1|CW146757 104_539_11139158_148_34987_051 Sorgh... 40 0.30
gb|CW152281.1|CW152281 104_553_11144405_148_36327_023 Sorgh... 40 0.30
gb|CW198052.1|CW198052 104_622_11182004_116_36828_070 Sorgh... 40 0.30
gb|CW198053.1|CW198053 104_622_11182004_148_36827_070 Sorgh... 40 0.30
gb|CW232529.1|CW232529 104_685_11212867_116_37488_076 Sorgh... 40 0.30
gb|CW305101.1|CW305101 104_790_11466139_116_37439_076 Sorgh... 40 0.30
gb|CW311970.1|CW311970 104_801_11470509_148_36282_085 Sorgh... 40 0.30
gb|CW402460.1|CW402460 fsbb001f093l20k0 Sorghum methylation... 40 0.30
gb|CW428701.1|CW428701 fsbb001f141i24f0 Sorghum methylation... 40 0.30
gb|CW442115.1|CW442115 fsbb001f161j20k0 Sorghum methylation... 40 0.30
gb|CW456192.1|CW456192 fsbb001f201g22k0 Sorghum methylation... 40 0.30
gb|CW458589.1|CW458589 fsbb001f204p04f0 Sorghum methylation... 40 0.30
gb|CW466513.1|CW466513 fsbb001f217m13f0 Sorghum methylation... 40 0.30
gb|CW469992.1|CW469992 fsbb001f222p16f0 Sorghum methylation... 40 0.30
gb|CW485202.1|CW485202 fsbb001f247m20k0 Sorghum methylation... 40 0.30
gb|CN124537.1|CN124537 RHOH1_5_A06.g1_A002 Acid- and alkali... 40 0.30
gb|CN150084.1|CN150084 WOUND1_66_G08.g1_A002 Wounded leaves... 40 0.30
>gb|CD235375.1|CD235375 SS1_29_H10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_29_H10_A012 3', mRNA sequence
Length = 652
Score = 339 bits (171), Expect = 2e-091
Identities = 398/474 (83%), Gaps = 6/474 (1%)
Strand = Plus / Plus
Query: 35 cgtcttccaggggatcagctccctcgtcgacgtcggcggcgggtttggtggcgccacaca 94
|||||| |||||||| |||||||| |||||||||| ||||||| | || ||||| || ||
Sbjct: 40 cgtctttcaggggattagctcccttgtcgacgtcgccggcgggctcggcggcgctaccca 99
Query: 95 ggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgt 154
| |||||||||| ||||||||||| |||||||||||||||| |||||||| |||| ||
Sbjct: 100 gaccatcgcgaaggcgttcccgcatgtggagtgcagcgtgctggatctcccacacgttgt 159
Query: 155 cgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagcgt 214
|||| ||||| |||| ||| ||||| || | |||||||||||||| |||||| |
Sbjct: 160 cgccaatgctcccactgacaccaatgtgaaatacattgccggtgacatgtttgagagcat 219
Query: 215 ttcgtcggcagacgctgtcttcctcaagtcgattatacatgactggggtgatgccgactg 274
| |||| ||| |||| ||||||||||||| |||| | |||||||||||||||||||| ||
Sbjct: 220 tccgtcagcaaacgcggtcttcctcaagtggattctgcatgactggggtgatgccgaatg 279
Query: 275 tgtcaagatactgaagaactgcaagaaggccataccagctcaaggaggcaaggtgataat 334
|||||||||| |||||||||||||||| |||||| || |||||||||| |||||| ||||
Sbjct: 280 tgtcaagatattgaagaactgcaagaaagccatagcatctcaaggaggaaaggtggtaat 339
Query: 335 actggatatcgtggttggagcaggatcgtcgtcgtgcgaccggaagaacgtggagacgca 394
| ||||||| |||||||||||||| ||||| |||| |||| | |||||||||||
Sbjct: 340 attggatatggtggttggagcagg------gtcgtccgacgagaagcatgtggagacgca 393
Query: 395 atgcttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtg 454
| |||||||||||||| || ||| |||||| |||| |||||||||||||| ||||||
Sbjct: 394 aatcttgtttgatctctttatgatgtttatcaatggtgccgagcgagatgagctagagtg 453
Query: 455 gaagaagatcatctttgaagccgggtttacatcttacaagatcatacctgttct 508
||||||||| || |||||||| || |||| |||||||||||||| ||||||||
Sbjct: 454 gaagaagattatttttgaagctggatttagctcttacaagatcatccctgttct 507
>gb|CX622109.1|CX622109 GABR1_62_C09.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_62_C09_A002 3', mRNA sequence
Length = 740
Score = 327 bits (165), Expect = 9e-088
Identities = 380/452 (84%), Gaps = 6/452 (1%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 51 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 110
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 111 attgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 170
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
|||||||| ||||||| |||||||| ||||||||| | |||||| | | ||||||||||
Sbjct: 171 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcctc 230
Query: 240 aagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
|||| | || | ||||| |||||||| || || |||||||||||| ||||||||||||||
Sbjct: 231 aagtgggttctgcatgattggggtgacgctgaatgtgtcaagatattgaagaactgcaag 290
Query: 300 aaggccataccagctcaaggaggcaaggtgataatactggatatcgtggttggagcagga 359
||||| |||||| || ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 291 aaggctataccatctgaaggagggaaggtgataataatggatatcgtggttggagcagg- 349
Query: 360 tcgtcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatg 419
||| | ||||| |||||| || ||||||||| |||||||||||||| ||||||
Sbjct: 350 -----gtcatccgaccagaagaatgtagagacgcaagtcttgtttgatctctttatcatg 404
Query: 420 actatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaagccggg 479
|||||||| || | ||| ||||||||| |||||||||||||||||| |||||||||||
Sbjct: 405 actatcaatggagccgaacgagatgagaaagagtggaagaagatcatttttgaagccgga 464
Query: 480 tttacatcttacaagatcatacctgttctggg 511
|||| ||||||||||| || |||||||||||
Sbjct: 465 tttaggtcttacaagataatgcctgttctggg 496
>gb|CN149045.1|CN149045 WOUND1_60_H10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_60_H10_A002 3', mRNA sequence
Length = 681
Score = 311 bits (157), Expect = 5e-083
Identities = 366/436 (83%), Gaps = 6/436 (1%)
Strand = Plus / Plus
Query: 76 ggtttggtggcgccacacaggccatcgcgaaagcgttcccgcacctggagtgcagcgtgc 135
||||||||||||| || ||||||||||| || |||||||||||| | || || || ||||
Sbjct: 1 ggtttggtggcgctacccaggccatcgcaaaggcgttcccgcacatcgaatgtagtgtgc 60
Query: 136 tagatctcccgaacgtcgtcgccggcgctcctgctgataccgccgtgaagtatgtcgccg 195
| |||||||| ||||| ||||||| ||||| |||| |||| ||||||||| | ||||
Sbjct: 61 tcgatctcccaaacgttgtcgccgttgctccgactgacaccgacgtgaagtacattgccg 120
Query: 196 gtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaagtcgattatacatg 255
| |||||||| ||||||||| | |||||| | | |||||||||||||| | || | ||||
Sbjct: 121 gcgacatgtttgagagcgttccatcggcaaatgttgtcttcctcaagtgggttctgcatg 180
Query: 256 actggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccataccagctc 315
| |||||||| || || |||||||||||| ||||||||||||||||||| |||||| ||
Sbjct: 181 attggggtgacgctgaatgtgtcaagatattgaagaactgcaagaaggctataccatctg 240
Query: 316 aaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgcgacc 375
||||||| |||||||||||| |||||||||||||||||||||| ||| | | |||
Sbjct: 241 aaggagggaaggtgataataatggatatcgtggttggagcagg------gtcatcctacc 294
Query: 376 ggaagaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggtgtcg 435
|||||| || ||||||||| |||||||||||||| |||||||||||||| || | ||
Sbjct: 295 agaagaatgtagagacgcaagtcttgtttgatctctttatcatgactatcaatggagccg 354
Query: 436 agcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttacaaga 495
| ||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 355 aacgagatgagaaagagtggaagaagatcatttttgaagccggatttaggtcttacaaga 414
Query: 496 tcatacctgttctggg 511
| || |||||||||||
Sbjct: 415 taatgcctgttctggg 430
>gb|AW923055.1|AW923055 DG1_48_G01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 690
Score = 309 bits (156), Expect = 2e-082
Identities = 353/419 (84%), Gaps = 6/419 (1%)
Strand = Plus / Plus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| || |||||||||||| | || || || ||||| |||||||| |||||
Sbjct: 5 caggccatcgcaaaggcgttcccgcacatcgaatgtagtgtgctcgatctcccaaacgtt 64
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
||||||| ||||| |||| |||| ||||||||| ||||||| |||||||| ||||||
Sbjct: 65 gtcgccgttgctccgactgacaccgacgtgaagtacatcgccggcgacatgtttgagagc 124
Query: 213 gtttcgtcggcagacgctgtcttcctcaagtcgattatacatgactggggtgatgccgac 272
||| | |||||| | | |||||||||||||| | || | ||||| |||||||| || ||
Sbjct: 125 gttccatcggcaaatgttgtcttcctcaagtgggttctgcatgattggggtgacgctgaa 184
Query: 273 tgtgtcaagatactgaagaactgcaagaaggccataccagctcaaggaggcaaggtgata 332
|||||||||||| ||||||||||||||||||| |||||| || ||||||| |||||||||
Sbjct: 185 tgtgtcaagatattgaagaactgcaagaaggctataccatctgaaggagggaaggtgata 244
Query: 333 atactggatatcgtggttggagcaggatcgtcgtcgtgcgaccggaagaacgtggagacg 392
||| |||||||||||||||||||||| ||| | ||||| |||||| || ||||||
Sbjct: 245 ataatggatatcgtggttggagcagg------gtcatccgaccagaagaatgtagagacg 298
Query: 393 caatgcttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagag 452
||| |||||||||||||| |||||||||||||| || | ||| ||||||||| ||||
Sbjct: 299 caagtcttgtttgatctctttatcatgactatcaatggagccgaacgagatgagaaagag 358
Query: 453 tggaagaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctggg 511
|||||||||||||| ||||||||||| |||| ||||||||||| || |||||||||||
Sbjct: 359 tggaagaagatcatttttgaagccggatttaggtcttacaagataatgcctgttctggg 417
>gb|CN146677.1|CN146677 WOUND1_43_B07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_43_B07_A002 3', mRNA sequence
Length = 754
Score = 305 bits (154), Expect = 3e-081
Identities = 375/449 (83%), Gaps = 6/449 (1%)
Strand = Plus / Plus
Query: 63 gacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcacctg 122
||||||| ||||||| | || ||||| || ||||||||||| || |||||||||||| |
Sbjct: 68 gacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcacatc 127
Query: 123 gagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgccgtg 182
|| || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| ||||
Sbjct: 128 gaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgacgtg 187
Query: 183 aagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
||||| ||||||| |||||||| ||||||||| | |||||| | | |||||||||||||
Sbjct: 188 aagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcctcaag 247
Query: 243 tcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaag 302
| | || | ||||| |||||||| || || |||||||||||| |||||||||||||||||
Sbjct: 248 tgggttctgcatgattggggtgacgctgaatgtgtcaagatattgaagaactgcaagaag 307
Query: 303 gccataccagctcaaggaggcaaggtgataatactggatatcgtggttggagcaggatcg 362
|| |||||| || ||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct: 308 gctataccatctgaaggagggaaggtgataataatggatattgtggttggagcagg---- 363
Query: 363 tcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatgact 422
||| | ||||| |||||| || ||||||||| |||||||||||||| |||||||||
Sbjct: 364 --gtcatccgaccagaagaatgtagagacgcaagtcttgtttgatctctttatcatgact 421
Query: 423 atcaacggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggttt 482
||||| || | ||| ||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 422 atcaatggagccgaacgagatgagaaagagtggaagaagatcattttcgaagccggattt 481
Query: 483 acatcttacaagatcatacctgttctggg 511
| ||||||||||| || |||||||||||
Sbjct: 482 aggtcttacaagataatgcctgttctggg 510
>gb|CX618728.1|CX618728 GABR1_41_G07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_41_G07_A002 3', mRNA sequence
Length = 669
Score = 301 bits (152), Expect = 5e-080
Identities = 352/419 (84%), Gaps = 6/419 (1%)
Strand = Plus / Plus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| || |||| ||||||| | || || || ||||| |||||||| |||||
Sbjct: 4 caggccatcgcaaaggcgtacccgcacatcgaatgtagtgtgctcgatctcccaaacgtt 63
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
||||||| ||||| |||| |||| ||||||||| ||||||| |||||||| ||||||
Sbjct: 64 gtcgccgttgctccgactgacaccgacgtgaagtacatcgccggcgacatgtttgagagc 123
Query: 213 gtttcgtcggcagacgctgtcttcctcaagtcgattatacatgactggggtgatgccgac 272
||| | |||||| | | |||||||||||||| | || | ||||| |||||||| || ||
Sbjct: 124 gttccatcggcaaatgttgtcttcctcaagtgggttctgcatgattggggtgacgctgaa 183
Query: 273 tgtgtcaagatactgaagaactgcaagaaggccataccagctcaaggaggcaaggtgata 332
|||||||||||| ||||||||||||||||||| |||||| || ||||||| |||||||||
Sbjct: 184 tgtgtcaagatattgaagaactgcaagaaggctataccatctgaaggagggaaggtgata 243
Query: 333 atactggatatcgtggttggagcaggatcgtcgtcgtgcgaccggaagaacgtggagacg 392
||| |||||||||||||||||||||| ||| | ||||| |||||| || ||||||
Sbjct: 244 ataatggatatcgtggttggagcagg------gtcatccgaccagaagaatgtagagacg 297
Query: 393 caatgcttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagag 452
||| |||||||||||||| |||||||||||||| || | ||| ||||||||| ||||
Sbjct: 298 caagtcttgtttgatctctttatcatgactatcaatggagccgaacgagatgagaaagag 357
Query: 453 tggaagaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctggg 511
|||||||||||||| ||||||||||| |||| ||||||||||| || |||||||||||
Sbjct: 358 tggaagaagatcatttttgaagccggatttaggtcttacaagataatgcctgttctggg 416
>gb|CN150018.1|CN150018 WOUND1_66_H09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_H09_A002 3', mRNA sequence
Length = 688
Score = 293 bits (148), Expect = 1e-077
Identities = 351/419 (83%), Gaps = 6/419 (1%)
Strand = Plus / Plus
Query: 93 caggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtc 152
||||||||||| || |||||||||||| | || || || ||||| |||||||| |||||
Sbjct: 9 caggccatcgcaaaggcgttcccgcacatcgaatgtagtgtgctcgatctcccaaacgtt 68
Query: 153 gtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagc 212
||||||| ||||| |||| |||| ||||||||| ||||||| |||||||| ||||||
Sbjct: 69 gtcgccgttgctccgactgacaccgacgtgaagtacatcgccggcgacatgtttgagagc 128
Query: 213 gtttcgtcggcagacgctgtcttcctcaagtcgattatacatgactggggtgatgccgac 272
||| | |||||| | |||||||||||||| | || | ||||| |||||||| || ||
Sbjct: 129 gttccatcggcaagtgttgtcttcctcaagtgggttctgcatgattggggtgacgctgaa 188
Query: 273 tgtgtcaagatactgaagaactgcaagaaggccataccagctcaaggaggcaaggtgata 332
|||||||||||| ||||||||||||||||||| |||||| || ||||||| |||||||||
Sbjct: 189 tgtgtcaagatattgaagaactgcaagaaggctataccatctgaaggagggaaggtgata 248
Query: 333 atactggatatcgtggttggagcaggatcgtcgtcgtgcgaccggaagaacgtggagacg 392
||| |||||||||||||||||||||| ||| | ||||| |||||| || ||| ||
Sbjct: 249 ataatggatatcgtggttggagcagg------gtcatccgaccagaagaatgtagagtcg 302
Query: 393 caatgcttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagag 452
||| |||||||||||||| |||||||||||||| || | ||| ||||||||| ||||
Sbjct: 303 caagtcttgtttgatctctttatcatgactatcaatggagccgaacgagatgagaaagag 362
Query: 453 tggaagaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctggg 511
|||||||||||||| ||||||||||| |||| ||||||||||| || |||||||||||
Sbjct: 363 tggaagaagatcatttttgaagccggatttaggtcttacaagataatgcctgttctggg 421
>gb|CF433158.1|CF433158 NIT1_25_E08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_25_E08_A002 3', mRNA sequence
Length = 626
Score = 281 bits (142), Expect = 5e-074
Identities = 354/425 (83%), Gaps = 6/425 (1%)
Strand = Plus / Plus
Query: 84 ggcgccacacaggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctc 143
||||| || ||| |||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct: 2 ggcgctacccagaccatcgcgaaggcgttcccgcatgtggagtgcagcgtgctggatctc 61
Query: 144 ccgaacgtcgtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatg 203
|| |||| |||||| ||||| |||| ||| ||||| || | ||||||||||||
Sbjct: 62 ccacacgtggtcgccaatgctcccactgacaccaatgtgaaatacattgccggtgacatg 121
Query: 204 ttcgagagcgtttcgtcggcagacgctgtcttcctcaagtcgattatacatgactggggt 263
|| |||||| || |||| ||| |||| ||||||||||||| |||| | ||||||||||||
Sbjct: 122 tttgagagcattccgtcagcaaacgcggtcttcctcaagtggattctgcatgactggggt 181
Query: 264 gatgccgactgtgtcaagatactgaagaactgcaagaaggccataccagctcaaggaggc 323
|||||||| |||||||||||| |||||||||||||||| |||||| || ||||||||||
Sbjct: 182 gatgccgaatgtgtcaagatattgaagaactgcaagaaagccatagcatctcaaggagga 241
Query: 324 aaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgcgaccggaagaac 383
|||||| ||||| ||||||| |||||||||||||| ||||| |||| |||| |
Sbjct: 242 aaggtggtaatattggatatggtggttggagcagg------gtcgtccgacgagaagcat 295
Query: 384 gtggagacgcaatgcttgtttgatctctacatcatgactatcaacggtgtcgagcgagat 443
|||||||| ||| |||||||||||||| || | | |||||| || | ||||||||||
Sbjct: 296 gtggagacccaaatcttgtttgatctctttatgacgtttatcaatggcgccgagcgagat 355
Query: 444 gagcgagagtggaagaagatcatctttgaagccgggtttacatcttacaagatcatacct 503
|||| ||||||||||||||| || |||||||| || |||| ||||||||||||||||||
Sbjct: 356 gagctagagtggaagaagattatttttgaagctggatttagctcttacaagatcatacct 415
Query: 504 gttct 508
|||||
Sbjct: 416 gttct 420
>gb|CD234204.1|CD234204 SS1_26_B02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_26_B02_A012 3', mRNA sequence
Length = 618
Score = 276 bits (139), Expect = 3e-072
Identities = 308/365 (84%), Gaps = 6/365 (1%)
Strand = Plus / Plus
Query: 147 aacgtcgtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttc 206
||||| ||||||| ||||| |||| |||| ||||||||| ||||||| ||||||||
Sbjct: 5 aacgtngtcgccgttgctccgactgacaccgacgtgaagtacatcgccggcgacatgttt 64
Query: 207 gagagcgtttcgtcggcagacgctgtcttcctcaagtcgattatacatgactggggtgat 266
||||||||| | |||||| | | |||||||||||||| | || | ||||| ||||||||
Sbjct: 65 gagagcgttccatcggcaaatgttgtcttcctcaagtgggttctgcatgattggggtgac 124
Query: 267 gccgactgtgtcaagatactgaagaactgcaagaaggccataccagctcaaggaggcaag 326
|| || |||||||||||| ||||||||||||||||||| |||||| || ||||||| |||
Sbjct: 125 gctgaatgtgtcaagatattgaagaactgcaagaaggctataccatctgaaggagggaag 184
Query: 327 gtgataatactggatatcgtggttggagcaggatcgtcgtcgtgcgaccggaagaacgtg 386
||||||||| |||||||||||||||||||||| ||| | ||||| |||||| ||
Sbjct: 185 gtgataataatggatatcgtggttggagcagg------gtcatccgaccagaagaatgta 238
Query: 387 gagacgcaatgcttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgag 446
||||||||| |||||||||||||| |||||||||||||| || | ||| |||||||||
Sbjct: 239 gagacgcaagtcttgtttgatctctttatcatgactatcaatggagccgaacgagatgag 298
Query: 447 cgagagtggaagaagatcatctttgaagccgggtttacatcttacaagatcatacctgtt 506
|||||||||||||||||| ||||||||||| |||| ||||||||||| || ||||||
Sbjct: 299 aaagagtggaagaagatcatttttgaagccggatttaggtcttacaagataatgcctgtt 358
Query: 507 ctggg 511
|||||
Sbjct: 359 ctggg 363
>gb|CN150014.1|CN150014 WOUND1_66_H05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_H05_A002 3', mRNA sequence
Length = 627
Score = 274 bits (138), Expect = 1e-071
Identities = 314/373 (84%), Gaps = 6/373 (1%)
Strand = Plus / Plus
Query: 139 atctcccgaacgtcgtcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtg 198
||||||| ||||| ||||||| ||||| |||| |||| ||||||||| ||||||| |
Sbjct: 1 atctcccaaacgttgtcgccgttgctccgactgacaccgacgtgaagtacatcgccggcg 60
Query: 199 acatgttcgagagcgtttcgtcggcagacgctgtcttcctcaagtcgattatacatgact 258
||||||| ||||||||| | |||||| | | |||||||||||||| | || | ||||| |
Sbjct: 61 acatgtttgagagcgttccatcggcaaatgttgtcttcctcaagtgggttctgcatgatt 120
Query: 259 ggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccataccagctcaag 318
||||||| || || |||||||||||| ||||||||||||||||||| |||||| | |||
Sbjct: 121 ggggtgacgctgaatgtgtcaagatattgaagaactgcaagaaggctataccatttgaag 180
Query: 319 gaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgcgaccgga 378
|||| |||||||||||| |||||||||||||||||||||| ||| | ||||| ||
Sbjct: 181 gagggaaggtgataataatggatatcgtggttggagcagg------gtcatccgaccaga 234
Query: 379 agaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggtgtcgagc 438
|||| || ||||||||| |||||||||||||| |||||||||||||| || | ||| |
Sbjct: 235 agaatgtagagacgcaagtcttgtttgatctctttatcatgactatcaatggagccgaac 294
Query: 439 gagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttacaagatca 498
|||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||| |
Sbjct: 295 gagatgagaaagagtggaagaagatcatttttgaagccggatttaggtcttacaagataa 354
Query: 499 tacctgttctggg 511
| |||||||||||
Sbjct: 355 tgcctgttctggg 367
>gb|CF431162.1|CF431162 NIT1_6_C08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_6_C08_A002 3', mRNA sequence
Length = 487
Score = 266 bits (134), Expect = 3e-069
Identities = 271/317 (85%), Gaps = 6/317 (1%)
Strand = Plus / Plus
Query: 192 gccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaagtcgattata 251
|||||||||||||| |||||| || |||| ||| |||| || |||||||||| |||| |
Sbjct: 40 gccggtgacatgtttgagagcattccgtcagcaaacgcggttttcctcaagtggattctg 99
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccatacca 311
|||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||
Sbjct: 100 catgactggggtgatgccgaatgtgtcaagatattgaagaactgcaagaaagccatagca 159
Query: 312 gctcaaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgc 371
|||||||||| |||||| ||||| ||||||| |||||||||||||| ||||| |
Sbjct: 160 tctcaaggaggaaaggtggtaatattggatatggtggttggagcagg------gtcgtcc 213
Query: 372 gaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggt 431
||| |||| | |||||||||||| |||||||||||||| || ||| |||||| |||
Sbjct: 214 gacgagaagcatgtggagacgcaaatcttgtttgatctctttatgatgtttatcaatggt 273
Query: 432 gtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttac 491
| |||||||||||||| ||||||||||||||| || |||||||| || |||| ||||||
Sbjct: 274 gccgagcgagatgagctagagtggaagaagattatttttgaagctggatttagctcttac 333
Query: 492 aagatcatacctgttct 508
|||||||||||||||||
Sbjct: 334 aagatcatacctgttct 350
>gb|CN145288.1|CN145288 WOUND1_28_A10.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_A10_A002 3', mRNA sequence
Length = 623
Score = 262 bits (132), Expect = 4e-068
Identities = 290/343 (84%), Gaps = 6/343 (1%)
Strand = Plus / Plus
Query: 169 ctgataccgccgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacg 228
|||| |||| ||||||||| ||||||| |||||||| ||||||||| | |||||| | |
Sbjct: 7 ctgacaccgacgtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatg 66
Query: 229 ctgtcttcctcaagtcgattatacatgactggggtgatgccgactgtgtcaagatactga 288
|||||||||||||| | || | ||||| |||||||| || || |||||||||||| |||
Sbjct: 67 ttgtcttcctcaagtgggttctgcatgattggggtgacgctgaatgtgtcaagatattga 126
Query: 289 agaactgcaagaaggccataccagctcaaggaggcaaggtgataatactggatatcgtgg 348
|||||||||||||||| |||||| || ||||||| |||||||||||| ||||||| ||||
Sbjct: 127 agaactgcaagaaggctataccatctgaaggagggaaggtgataataatggatatggtgg 186
Query: 349 ttggagcaggatcgtcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatc 408
|||||||||| ||| | ||||| |||||| || ||||||||| |||||||||||
Sbjct: 187 ttggagcagg------gtcatccgaccagaagaatgtagagacgcaagtcttgtttgatc 240
Query: 409 tctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatct 468
||| |||||||||||||| || | ||| ||||||||| |||||||||||||||||| |
Sbjct: 241 tctttatcatgactatcaagggagccgaacgagatgagaaagagtggaagaagatcattt 300
Query: 469 ttgaagccgggtttacatcttacaagatcatacctgttctggg 511
|||||||||| |||| ||||||||||| || |||||||||||
Sbjct: 301 ttgaagccggatttaggtcttacaagataatgcctgttctggg 343
>gb|CN141678.1|CN141678 WOUND1_1_E01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_1_E01_A002 3', mRNA sequence
Length = 584
Score = 258 bits (130), Expect = 7e-067
Identities = 279/329 (84%), Gaps = 6/329 (1%)
Strand = Plus / Plus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
||||||||| ||||||| |||||||| ||||||||| | |||||| | | |||||||||
Sbjct: 2 cgtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcct 61
Query: 239 caagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaa 298
||||| | || | ||||| |||||||| || || |||||||||||| |||||||||||||
Sbjct: 62 caagtgggttctgcatgattggggtgacgctgaatgtgtcaagatattgaagaactgcaa 121
Query: 299 gaaggccataccagctcaaggaggcaaggtgataatactggatatcgtggttggagcagg 358
|||||| |||||| || ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 122 gaaggctataccatctgaaggagggaaggtgataataatggatatcgtggttggagcagg 181
Query: 359 atcgtcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatctctacatcat 418
||| | ||||| |||||| || ||||||||| |||||||||||||| |||||
Sbjct: 182 ------gtcatccgaccagaagaatgtagagacgcaagtcttgtttgatctctttatcat 235
Query: 419 gactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgg 478
||||||||| || | ||| ||||||||| |||||||||||||||||| |||||||||||
Sbjct: 236 gactatcaatggagccgaacgagatgagaaagagtggaagaagatcatttttgaagccgg 295
Query: 479 gtttacatcttacaagatcatacctgttc 507
|||| ||||||||||| || |||||||
Sbjct: 296 atttaggtcttacaagataatgcctgttc 324
>gb|CN124677.1|CN124677 RHOH1_6_F06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_6_F06_A002 3', mRNA sequence
Length = 619
Score = 246 bits (124), Expect = 3e-063
Identities = 264/311 (84%), Gaps = 6/311 (1%)
Strand = Plus / Plus
Query: 201 atgttcgagagcgtttcgtcggcagacgctgtcttcctcaagtcgattatacatgactgg 260
||||| ||||||||| | |||||| | | |||||||||||||| | || | ||||| |||
Sbjct: 1 atgtttgagagcgttccatcggcaaatgttgtcttcctcaagtgggttctgcatgattgg 60
Query: 261 ggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccataccagctcaagga 320
||||| || || |||||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 61 ggtgacgctgaatgtgtcaagatattgaagaactgcaagaaggctataccatctgaagga 120
Query: 321 ggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgcgaccggaag 380
|| |||||||||||| |||||||||||||||||||||| ||| | ||||| ||||
Sbjct: 121 gggaaggtgataataatggatatcgtggttggagcagg------gtcatccgaccagaag 174
Query: 381 aacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggtgtcgagcga 440
|| || ||||||||| |||||||||||||| |||||||||||||| || | |||||||
Sbjct: 175 aatgtagagacgcaagtcttgtttgatctctttatcatgactatcaagggagccgagcga 234
Query: 441 gatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttacaagatcata 500
|||||| |||||||||||||||||| |||||| |||| |||| ||||||||||| ||
Sbjct: 235 gatgagaaagagtggaagaagatcatttttgaacccggatttaggtcttacaagataatg 294
Query: 501 cctgttctggg 511
|||||||||||
Sbjct: 295 cctgttctggg 305
>gb|CN141999.1|CN141999 WOUND1_3_E12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_3_E12_A002 3', mRNA sequence
Length = 539
Score = 228 bits (115), Expect = 6e-058
Identities = 240/282 (85%), Gaps = 6/282 (2%)
Strand = Plus / Plus
Query: 230 tgtcttcctcaagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaa 289
|||||||||||||| | || | ||||| ||||||||||| || |||||||||||| ||||
Sbjct: 2 tgtcttcctcaagtgggttctgcatgattggggtgatgctgaatgtgtcaagatattgaa 61
Query: 290 gaactgcaagaaggccataccagctcaaggaggcaaggtgataatactggatatcgtggt 349
||||||||||||||| |||||| || ||||||| |||||||||||| ||||||||||| |
Sbjct: 62 gaactgcaagaaggctataccatctgaaggagggaaggtgataataatggatatcgtgct 121
Query: 350 tggagcaggatcgtcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatct 409
||||||||| ||| | ||||| |||||| || ||||||||| ||||||||||||
Sbjct: 122 tggagcagg------gtcatccgaccagaagaatgtagagacgcaagtcttgtttgatct 175
Query: 410 ctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatctt 469
|| |||||||||||||| || | ||| ||||||||| |||||||||||||||||| ||
Sbjct: 176 ctttatcatgactatcaatggagccgaacgagatgagaaagagtggaagaagatcatttt 235
Query: 470 tgaagccgggtttacatcttacaagatcatacctgttctggg 511
||||||||| |||| |||| |||||| || |||||||||||
Sbjct: 236 tgaagccggatttaggtctttcaagataatgcctgttctggg 277
>gb|CW364958.1|CW364958 fsbb001f037d22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f037d22, DNA
sequence
Length = 730
Score = 226 bits (114), Expect = 2e-057
Identities = 221/257 (85%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccatacca 311
|||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||
Sbjct: 642 catgactggggtgatgccgaatgtgtcaagatattgaagaactgcaagaaagccatagca 583
Query: 312 gctcaaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgc 371
|||||||||| |||||| ||||| ||||||| |||||||||||||| ||||| |
Sbjct: 582 tctcaaggaggaaaggtggtaatattggatatggtggttggagcagg------gtcgtcc 529
Query: 372 gaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggt 431
||| |||| | |||||||||||| |||||||||||||| || ||| |||||| |||
Sbjct: 528 gacgagaagcatgtggagacgcaaatcttgtttgatctctttatgatgtttatcaatggt 469
Query: 432 gtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttac 491
| |||||||||||||| ||||||||||||||| || |||||||| || |||| ||||||
Sbjct: 468 gccgagcgagatgagctagagtggaagaagattatttttgaagctggatttagctcttac 409
Query: 492 aagatcatacctgttct 508
|||||||||||||||||
Sbjct: 408 aagatcatacctgttct 392
>gb|CL152122.1|CL152122 104_335_10779735_116_31364_135 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779735, DNA
sequence
Length = 699
Score = 224 bits (113), Expect = 1e-056
Identities = 223/260 (85%), Gaps = 6/260 (2%)
Strand = Plus / Minus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccatacca 311
||||| |||||||| || || |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 461 catgattggggtgacgctgaatgtgtcaagatattgaagaactgcaagaaggctatacca 402
Query: 312 gctcaaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgc 371
|| ||||||| |||||||||||| |||||||||||||||||||||| ||| | |
Sbjct: 401 tctgaaggagggaaggtgataataatggatatcgtggttggagcagg------gtcatcc 348
Query: 372 gaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggt 431
|||| |||||| || ||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 347 gaccagaagaatgtagagacgcaagtcttgtttgatctctttatcatgactatcaatgga 288
Query: 432 gtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttac 491
| ||| ||||||||| |||||||||||||||||| ||||||||||| |||| ||||||
Sbjct: 287 gccgaacgagatgagaaagagtggaagaagatcatttttgaagccggatttaggtcttac 228
Query: 492 aagatcatacctgttctggg 511
||||| || |||||||||||
Sbjct: 227 aagataatgcctgttctggg 208
Score = 97.6 bits (49), Expect = 1e-018
Identities = 124/149 (83%)
Strand = Plus / Minus
Query: 94 aggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcg 153
|||||||||| || |||||||||||| | || || || ||||| |||||||| ||||| |
Sbjct: 699 aggccatcgcaaaggcgttcccgcacatcgaatgtagtgtgctcgatctcccaaacgttg 640
Query: 154 tcgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagcg 213
|||||| ||||| |||| |||| ||||||||| ||||||| |||||||| |||||||
Sbjct: 639 tcgccgttgctccgactgacaccgacgtgaagtacatcgccggcgacatgtttgagagcg 580
Query: 214 tttcgtcggcagacgctgtcttcctcaag 242
|| | |||||| | | |||||||||||||
Sbjct: 579 ttccatcggcaaatgttgtcttcctcaag 551
>gb|CL152965.1|CL152965 104_337_10780377_116_31368_009 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780377, DNA
sequence
Length = 583
Score = 224 bits (113), Expect = 1e-056
Identities = 223/260 (85%), Gaps = 6/260 (2%)
Strand = Plus / Minus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccatacca 311
||||| |||||||| || || |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 461 catgattggggtgacgctgaatgtgtcaagatattgaagaactgcaagaaggctatacca 402
Query: 312 gctcaaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgc 371
|| ||||||| |||||||||||| |||||||||||||||||||||| ||| | |
Sbjct: 401 tctgaaggagggaaggtgataataatggatatcgtggttggagcagg------gtcatcc 348
Query: 372 gaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggt 431
|||| |||||| || ||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 347 gaccagaagaatgtagagacgcaagtcttgtttgatctctttatcatgactatcaatgga 288
Query: 432 gtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttac 491
| ||| ||||||||| |||||||||||||||||| ||||||||||| |||| ||||||
Sbjct: 287 gccgaacgagatgagaaagagtggaagaagatcatttttgaagccggatttaggtcttac 228
Query: 492 aagatcatacctgttctggg 511
||||| || |||||||||||
Sbjct: 227 aagataatgcctgttctggg 208
>gb|CW124854.1|CW124854 104_504_11112012_116_34706_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112012, DNA
sequence
Length = 512
Score = 224 bits (113), Expect = 1e-056
Identities = 223/260 (85%), Gaps = 6/260 (2%)
Strand = Plus / Minus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccatacca 311
||||| |||||||| || || |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 373 catgattggggtgacgctgaatgtgtcaagatattgaagaactgcaagaaggctatacca 314
Query: 312 gctcaaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgc 371
|| ||||||| |||||||||||| |||||||||||||||||||||| ||| | |
Sbjct: 313 tctgaaggagggaaggtgataataatggatatcgtggttggagcagg------gtcatcc 260
Query: 372 gaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggt 431
|||| |||||| || ||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 259 gaccagaagaatgtagagacgcaagtcttgtttgatctctttatcatgactatcaatgga 200
Query: 432 gtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttac 491
| ||| ||||||||| |||||||||||||||||| ||||||||||| |||| ||||||
Sbjct: 199 gccgaacgagatgagaaagagtggaagaagatcatttttgaagccggatttaggtcttac 140
Query: 492 aagatcatacctgttctggg 511
||||| || |||||||||||
Sbjct: 139 aagataatgcctgttctggg 120
Score = 42.1 bits (21), Expect = 0.076
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 198 gacatgttcgagagcgtttcgtcggcagacgctgtcttcctcaag 242
|||||||| ||||||||| | |||||| | | |||||||||||||
Sbjct: 507 gacatgtttgagagcgttccatcggcaaatgttgtcttcctcaag 463
>gb|CW255681.1|CW255681 104_720_11226371_148_35403_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226371, DNA
sequence
Length = 706
Score = 224 bits (113), Expect = 1e-056
Identities = 223/260 (85%), Gaps = 6/260 (2%)
Strand = Plus / Minus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccatacca 311
||||| |||||||| || || |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 346 catgattggggtgacgctgaatgtgtcaagatattgaagaactgcaagaaggctatacca 287
Query: 312 gctcaaggaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgc 371
|| ||||||| |||||||||||| |||||||||||||||||||||| ||| | |
Sbjct: 286 tctgaaggagggaaggtgataataatggatatcgtggttggagcagg------gtcatcc 233
Query: 372 gaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggt 431
|||| |||||| || ||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 232 gaccagaagaatgtagagacgcaagtcttgtttgatctctttatcatgactatcaatgga 173
Query: 432 gtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttac 491
| ||| ||||||||| |||||||||||||||||| ||||||||||| |||| ||||||
Sbjct: 172 gccgaacgagatgagaaagagtggaagaagatcatttttgaagccggatttaggtcttac 113
Query: 492 aagatcatacctgttctggg 511
||||| || |||||||||||
Sbjct: 112 aagataatgcctgttctggg 93
Score = 117 bits (59), Expect = 2e-024
Identities = 152/183 (83%)
Strand = Plus / Minus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 618 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 559
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 558 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 499
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
|||||||| ||||||| |||||||| ||||||||| | |||||| | | ||||||||||
Sbjct: 498 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcctc 439
Query: 240 aag 242
|||
Sbjct: 438 aag 436
>gb|CD236143.1|CD236143 SS1_32_H03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_32_H03_A012 3', mRNA sequence
Length = 531
Score = 218 bits (110), Expect = 6e-055
Identities = 235/277 (84%), Gaps = 6/277 (2%)
Strand = Plus / Plus
Query: 235 tcctcaagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaact 294
||||||||| | || | ||||| |||||||| || || |||||||||||| |||||||||
Sbjct: 1 tcctcaagtgggttctgcatgattggggtgacgctgaatgtgtcaagatattgaagaact 60
Query: 295 gcaagaaggccataccagctcaaggaggcaaggtgataatactggatatcgtggttggag 354
|||||||||| |||||| || ||||||| |||||||||||| ||||||||||||||||||
Sbjct: 61 gcaagaaggctataccatctgaaggagggaaggtgataataatggatatcgtggttggag 120
Query: 355 caggatcgtcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatctctaca 414
|||| ||| | ||||| |||||| || ||||||||| |||||||||||||| |
Sbjct: 121 cagg------gtcatccgaccagaagaatgtagagacgcaagtcttgtttgatctcttta 174
Query: 415 tcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaag 474
||||||||||||| || | | | ||||||||| |||||||||||||||||| |||||||
Sbjct: 175 tcatgactatcaatggagccaaacgagatgagaaagagtggaagaagatcatttttgaag 234
Query: 475 ccgggtttacatcttacaagatcatacctgttctggg 511
|||| |||| ||||||||||| || |||||||||||
Sbjct: 235 ccggatttaggtcttacaagataatgcctgttctggg 271
>gb|CN148575.1|CN148575 WOUND1_57_A09.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_57_A09_A002 5', mRNA sequence
Length = 863
Score = 210 bits (106), Expect = 1e-052
Identities = 232/274 (84%)
Strand = Plus / Plus
Query: 35 cgtcttccaggggatcagctccctcgtcgacgtcggcggcgggtttggtggcgccacaca 94
|||||| |||||||| |||||||| |||||||||| ||||||| | || ||||| || ||
Sbjct: 589 cgtctttcaggggattagctcccttgtcgacgtcgccggcgggctcggcggcgctaccca 648
Query: 95 ggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgt 154
| |||||||||| ||||||||||| |||||||||||||||| |||||||| |||| ||
Sbjct: 649 gaccatcgcgaaggcgttcccgcatgtggagtgcagcgtgctggatctcccacacgttgt 708
Query: 155 cgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagcgt 214
|||| ||||| |||| ||| ||||| || | |||||||||||||| |||||| |
Sbjct: 709 cgccaatgctcccactgacaccaatgtgaaatacattgccggtgacatgtttgagagcat 768
Query: 215 ttcgtcggcagacgctgtcttcctcaagtcgattatacatgactggggtgatgccgactg 274
| |||| ||| |||| ||||||||||||| |||| | |||||||||||||||||||| ||
Sbjct: 769 tccgtcagcaaacgcggtcttcctcaagtggattctgcatgactggggtgatgccgaatg 828
Query: 275 tgtcaagatactgaagaactgcaagaaggccata 308
|||||||||| |||||||||||||||| ||||||
Sbjct: 829 tgtcaagatattgaagaactgcaagaaagccata 862
>gb|CN150772.1|CN150772 WOUND1_71_H03.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_71_H03_A002 3', mRNA sequence
Length = 569
Score = 194 bits (98), Expect = 9e-048
Identities = 259/313 (82%), Gaps = 6/313 (1%)
Strand = Plus / Plus
Query: 199 acatgttcgagagcgtttcgtcggcagacgctgtcttcctcaagtcgattatacatgact 258
||||||| ||||||||| | |||||| | | |||||||||||||| | || | ||||| |
Sbjct: 1 acatgtttgagagcgttccatcggcaaatgttgtcttcctcaagtgggttctgcatgatt 60
Query: 259 ggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggccataccagctcaag 318
| ||||| || || |||||||||||| |||||||||||||||||| || ||| || |||
Sbjct: 61 gaggtgacgctgaatgtgtcaagatattgaagaactgcaagaagggtatgccatctgaag 120
Query: 319 gaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgcgaccgga 378
|||| |||||||||||| ||||||||| |||||||||||| ||| | ||||| ||
Sbjct: 121 gagggaaggtgataataatggatatcggggttggagcagg------gtcatccgaccaga 174
Query: 379 agaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggtgtcgagc 438
|| | || ||||||||| |||||||||||||| |||||||||||||| || | ||| |
Sbjct: 175 aggatgtagagacgcaagtcttgtttgatctctttatcatgactatcaatggagccgaac 234
Query: 439 gagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttacaagatca 498
|||||||| |||| ||||||||||||| ||||||||||| |||| ||||||||||| |
Sbjct: 235 gagatgagaaagagcggaagaagatcatttttgaagccggatttaggtcttacaagataa 294
Query: 499 tacctgttctggg 511
| | |||||||||
Sbjct: 295 tccgtgttctggg 307
>gb|CW097149.1|CW097149 104_463_11002295_116_34344_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002295, DNA
sequence
Length = 439
Score = 182 bits (92), Expect = 3e-044
Identities = 225/265 (84%), Gaps = 7/265 (2%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaa-ctgcaagaagg 303
|||||| ||||||||||| |||||||| |||||||||||| | ||||| ||||||||| |
Sbjct: 320 gattatgcatgactggggagatgccgaatgtgtcaagatatttaagaatctgcaagaaag 261
Query: 304 ccataccagctcaaggaggcaaggtgataatactggatatcgtggttggagcaggatcgt 363
||||| || |||||||||| |||||| ||||| ||||||| |||||||||||||| ||||
Sbjct: 260 ccatagcatctcaaggaggaaaggtggtaatattggatatggtggttggagcagggtcgt 201
Query: 364 cgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatctctacatcatgacta 423
| ||| ||| |||| | |||||||||||| |||||||||||||| || ||| |
Sbjct: 200 c--cgt-cga---gaagcatgtggagacgcaaatcttgtttgatctctttatgatgttaa 147
Query: 424 tcaacggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggttta 483
|||| |||| |||||||||||||| ||||||||||||||| || || ||||| || ||||
Sbjct: 146 tcaatggtgccgagcgagatgagctagagtggaagaagattattttggaagctggattta 87
Query: 484 catcttacaagatcatacctgttct 508
|||||||||||||||||||||||
Sbjct: 86 gctcttacaagatcatacctgttct 62
>gb|BF421814.1|BF421814 FM1_11_C04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 492
Score = 174 bits (88), Expect = 8e-042
Identities = 186/219 (84%), Gaps = 6/219 (2%)
Strand = Plus / Plus
Query: 293 ctgcaagaaggccataccagctcaaggaggcaaggtgataatactggatatcgtggttgg 352
|||||||||||| |||||| || ||||||| ||||| |||||| ||||||||||||||||
Sbjct: 4 ctgcaagaaggctataccatctgaaggagggaaggtaataataatggatatcgtggttgg 63
Query: 353 agcaggatcgtcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatctcta 412
|||||| || || ||||| |||||| || ||||||||| ||||||||||||||
Sbjct: 64 agcagggtcatc------cgaccagaagaatgtagagacgcaagtcttgtttgatctctt 117
Query: 413 catcatgactatcaacggtgtcgagcgagatgagcgagagtggaagaagatcatctttga 472
|||||||||||||| || | ||| ||||||||| |||||||||||||||||| |||||
Sbjct: 118 tatcatgactatcaatggagccgaacgagatgagaaagagtggaagaagatcatttttga 177
Query: 473 agccgggtttacatcttacaagatcatacctgttctggg 511
|||||| |||| ||||||||||| || |||||||||||
Sbjct: 178 agccggatttaggtcttacaagataatgcctgttctggg 216
>gb|CN150866.1|CN150866 WOUND1_72_A06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_72_A06_A002 3', mRNA sequence
Length = 725
Score = 172 bits (87), Expect = 3e-041
Identities = 304/375 (81%), Gaps = 6/375 (1%)
Strand = Plus / Plus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcgggtttggtggcgccacacaggcc 98
||||| ||||| ||||| || || ||||||| ||||||| |||||||| | ||| |
Sbjct: 62 ttccaagggattagctctcttgtggacgtcgccggcgggcacggtggcgcggcgcagact 121
Query: 99 atcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgcc 158
||||| || ||||||||||| |||||||||||||||| |||||| | |||| |||||
Sbjct: 122 atcgcaaaggcgttcccgcatgtggagtgcagcgtgctggatctctcacacgttatcgcc 181
Query: 159 ggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagcgtttcg 218
| ||||| || | ||| |||||||| ||||||| |||||||| |||||| || ||
Sbjct: 182 agtgctcccactaacaccaatgtgaagtacatcgccggagacatgtttgagagcattccg 241
Query: 219 tcggcagacgctgtcttcctcaagtcgattatacatgactggggtgatgccgactgtgtc 278
|||||| ||||||||||||| |||| |||||| |||||||||||||||||||| ||||||
Sbjct: 242 tcggcaaacgctgtcttccttaagtggattatgcatgactggggtgatgccgaatgtgtc 301
Query: 279 aagatactgaagaactgcaagaaggccataccagctcaagg---aggcaaggtgataata 335
|| ||| ||||||||||||||||| | ||| || ||||||| ||| ||||| ||| ||
Sbjct: 302 aaaatattgaagaactgcaagaagactatagcatctcaagggggaggaaaggtaatatta 361
Query: 336 ctggatatcgtggttggagcaggatcgtcgtcgtgcgaccggaagaacgtggagacgcaa 395
||||||| ||||||||| |||| ||||| || |||| |||| | ||||||||||||
Sbjct: 362 ttggatatggtggttggaacagggtcgtcatc---cgacgagaagcatgtggagacgcaa 418
Query: 396 tgcttgtttgatctc 410
||||||||||||
Sbjct: 419 gtattgtttgatctc 433
Score = 101 bits (51), Expect = 1e-019
Identities = 105/123 (85%)
Strand = Plus / Plus
Query: 429 ggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatct 488
|||| |||||||||||| | ||||||||| ||||| || |||||||| || |||| |
Sbjct: 458 ggtgccgagcgagatgaactagagtggaaaaagattatttttgaagcgggatttagccat 517
Query: 489 tacaagatcatacctgttctgggcactcgatccataattgaagtctgcccatagaaacca 548
|||||||||||||||||||| || |||||||||||||| || |||| |||||||||| ||
Sbjct: 518 tacaagatcatacctgttctaggtactcgatccataatggaggtctacccatagaaatca 577
Query: 549 ata 551
|||
Sbjct: 578 ata 580
>gb|AI723825.1|AI723825 RHIZ1_12_H04.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 427
Score = 151 bits (76), Expect = 1e-034
Identities = 258/318 (81%), Gaps = 3/318 (0%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcgggtttggtggcgccacacaggcc 98
||||| ||||| ||||| || |||||||||| ||||||| |||||||| | ||| |
Sbjct: 321 ttccaagggattagctctcttgtcgacgtcgccggcgggcacggtggcgctgcgcagact 262
Query: 99 atcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgcc 158
||||| || |||||||||| |||||||||||||||| |||||| | |||| |||||
Sbjct: 261 atcgcaaagacgttcccgcatgtggagtgcagcgtgctggatctctcacacgttatcgcc 202
Query: 159 ggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagcgtttcg 218
| ||||| || | ||| |||||||| ||||||| |||||||| |||||| || ||
Sbjct: 201 agtgctcccactaacaccaatgtgaagtacatcgccggagacatgtttgagagcattccg 142
Query: 219 tcggcagacgctgtcttcctcaagtcgattatacatgactggggtgatgccgactgtgtc 278
|||||| ||||||||||||| |||| |||||| |||||||||||||| | ||| ||| ||
Sbjct: 141 tcggcaaacgctgtcttccttaagtggattatgcatgactggggtgacgacgaatgtatc 82
Query: 279 aagatactgaagaactgcaagaaggccataccagctc---aaggaggcaaggtgataata 335
|| ||| ||||||||||||||||||| ||| || ||| ||||||| ||| | ||||||
Sbjct: 81 aaaatattgaagaactgcaagaaggctatagcatctcaaaaaggagggaagataataata 22
Query: 336 ctggatatcgtggttgga 353
||||||| |||||||||
Sbjct: 21 ttggatatggtggttgga 4
>gb|CN143623.1|CN143623 WOUND1_17_H12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_17_H12_A002 3', mRNA sequence
Length = 389
Score = 133 bits (67), Expect = 3e-029
Identities = 162/194 (83%), Gaps = 6/194 (3%)
Strand = Plus / Plus
Query: 318 ggaggcaaggtgataatactggatatcgtggttggagcaggatcgtcgtcgtgcgaccgg 377
||||| |||||||||||| |||||||||||||||||||||| || || ||||| |
Sbjct: 1 ggagggaaggtgataataatggatatcgtggttggagcagggtcatc------cgaccag 54
Query: 378 aagaacgtggagacgcaatgcttgtttgatctctacatcatgactatcaacggtgtcgag 437
||||| || ||||||||| ||||||||| |||| ||||||||||||||||| | |||
Sbjct: 55 aagaatgtagagacgcaagtcttgtttgacctctttatcatgactatcaacggagccgaa 114
Query: 438 cgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatcttacaagatc 497
|||||||| |||||||||||||||| | ||||||||||| |||| |||||||||||
Sbjct: 115 tgagatgagaaagagtggaagaagatcttttttgaagccggatttaggtcttacaagata 174
Query: 498 atacctgttctggg 511
|| |||||| ||||
Sbjct: 175 atgcctgttatggg 188
>gb|CW125845.1|CW125845 104_506_11112559_116_34722_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112559, DNA
sequence
Length = 370
Score = 127 bits (64), Expect = 2e-027
Identities = 172/208 (82%)
Strand = Plus / Minus
Query: 35 cgtcttccaggggatcagctccctcgtcgacgtcggcggcgggtttggtggcgccacaca 94
|||||| |||||||| |||||||| |||||||||| ||||||| | || ||||| || ||
Sbjct: 251 cgtctttcaggggattagctcccttgtcgacgtcgccggcgggctcggcggcgctaccca 192
Query: 95 ggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgt 154
| |||||||||| ||||||||||| |||||||||||||||| |||||||| |||| ||
Sbjct: 191 gaccatcgcgaaggcgttcccgcatgtggagtgcagcgtgctggatctcccacacgttgt 132
Query: 155 cgccggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagcgt 214
|||| ||||| |||| ||| ||||| || | |||||||||||||| |||||| |
Sbjct: 131 cgccaatgctcccactgacaccaatgtgaaatacattgccggtgacatgtttgagagcat 72
Query: 215 ttcgtcggcagacgctgtcttcctcaag 242
| |||| ||| |||| ||||||||||||
Sbjct: 71 tccgtcagcaaacgcggtcttcctcaag 44
>gb|CN149132.1|CN149132 WOUND1_60_H10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_60_H10_A002 5', mRNA sequence
Length = 861
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 656 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 715
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 716 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 775
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
|||||||| ||||||| |||||||| ||||||||| | |||||| | | ||||||||||
Sbjct: 776 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcctc 835
Query: 240 aagtcgattatacatgactggggtga 265
|||| | || | ||||| ||||||||
Sbjct: 836 aagtgggttctgcatgattggggtga 861
>gb|CN124765.1|CN124765 RHOH1_6_F06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_6_F06_A002 5', mRNA sequence
Length = 794
Score = 119 bits (60), Expect = 4e-025
Identities = 153/184 (83%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 599 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 658
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 659 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 718
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
|||||||| ||||||| |||||||| ||||||||| | |||||| | | ||||||||||
Sbjct: 719 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcctc 778
Query: 240 aagt 243
||||
Sbjct: 779 aagt 782
>gb|CN144107.1|CN144107 WOUND1_20_E12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_20_E12_A002 3', mRNA sequence
Length = 473
Score = 119 bits (60), Expect = 4e-025
Identities = 123/144 (85%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||||||| ||||||| | ||||||| ||||||||||| |||| ||| |||||
Sbjct: 282 cttgtttgatctcttcatcatgtttgtcaacggcgtcgagcgagacgagcaagaatggaa 341
Query: 458 gaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctgggcactcg 517
||||||||||||||||||||| |||| |||||| |||||||||||||| || |||
Sbjct: 342 gaagatcatctttgaagccggatttagggattacaaaatcatacctgttcttggtgttcg 401
Query: 518 atccataattgaagtctgcccata 541
|||||| ||||| |||| ||||||
Sbjct: 402 atccatcattgaggtctacccata 425
Score = 83.8 bits (42), Expect = 2e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
||||||||||| || ||||||||||| |||||| || | ||||| |||| ||||||||
Sbjct: 64 gtgaagtatgttgctggtgacatgtttgagagcattccaccggcaaacgccgtcttcctt 123
Query: 240 aagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
|||| | || | ||||||||||| ||||| || ||| |||||||||||||||| || |||
Sbjct: 124 aagtgggttttgcatgactggggcgatgctgattgtatcaagatactgaagaattgtaag 183
Query: 300 aa 301
||
Sbjct: 184 aa 185
>gb|CN144667.1|CN144667 WOUND1_23_F05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_23_F05_A002 5', mRNA sequence
Length = 792
Score = 119 bits (60), Expect = 4e-025
Identities = 153/184 (83%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 599 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 658
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 659 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 718
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
|||||||| ||||||| |||||||| ||||||||| | |||||| | | ||||||||||
Sbjct: 719 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcctc 778
Query: 240 aagt 243
||||
Sbjct: 779 aagt 782
>gb|CN148282.1|CN148282 WOUND1_55_G06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_G06_A002 3', mRNA sequence
Length = 741
Score = 119 bits (60), Expect = 4e-025
Identities = 123/144 (85%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||||||| ||||||| | ||||||| ||||||||||| |||| ||| |||||
Sbjct: 552 cttgtttgatctcttcatcatgtttgtcaacggcgtcgagcgagacgagcaagaatggaa 611
Query: 458 gaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctgggcactcg 517
||||||||||||||||||||| |||| |||||| |||||||||||||| || |||
Sbjct: 612 gaagatcatctttgaagccggatttagcgattacaaaatcatacctgttcttggtgttcg 671
Query: 518 atccataattgaagtctgcccata 541
|||||| ||||| |||| ||||||
Sbjct: 672 atccatcattgaggtctacccata 695
Score = 85.7 bits (43), Expect = 6e-015
Identities = 109/131 (83%)
Strand = Plus / Plus
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
||||||||||| || ||||||||||| |||||| || | ||||| |||| ||||||||
Sbjct: 334 gtgaagtatgttgctggtgacatgtttgagagcattccaccggcaaacgccgtcttcctt 393
Query: 240 aagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
|||| | || | ||||||||||| ||||| || ||| |||||||||||||||| || |||
Sbjct: 394 aagtgggttttgcatgactggggcgatgctgattgtatcaagatactgaagaattgtaag 453
Query: 300 aaggccatacc 310
|| || |||||
Sbjct: 454 aatgctatacc 464
>gb|CN150569.1|CN150569 WOUND1_70_C05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_70_C05_A002 3', mRNA sequence
Length = 749
Score = 119 bits (60), Expect = 4e-025
Identities = 123/144 (85%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||||||| ||||||| | ||||||| ||||||||||| |||| ||| |||||
Sbjct: 458 cttgtttgatctcttcatcatgtttgtcaacggcgtcgagcgagacgagcaagaatggaa 517
Query: 458 gaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctgggcactcg 517
||||||||||||||||||||| |||| |||||| |||||||||||||| || |||
Sbjct: 518 gaagatcatctttgaagccggatttagcgattacaaaatcatacctgttcttggtgttcg 577
Query: 518 atccataattgaagtctgcccata 541
|||||| ||||| |||| ||||||
Sbjct: 578 atccatcattgaggtctacccata 601
Score = 77.8 bits (39), Expect = 1e-012
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
||||||||||| || ||||||||||| |||||| || | ||||| |||| ||||||||
Sbjct: 240 gtgaagtatgttgctggtgacatgtttgagagcattccaccggcaaacgccgtcttcctt 299
Query: 240 aagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
|||| | || | ||||||||||| | ||| || ||| |||||||||||||||| || |||
Sbjct: 300 aagtgggttttgcatgactggggcggtgctgattgtatcaagatactgaagaattgtaag 359
Query: 300 aaggccatacc 310
|| || |||||
Sbjct: 360 aatgctatacc 370
>gb|CN151544.1|CN151544 WOUND1_76_C11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_76_C11_A002 3', mRNA sequence
Length = 620
Score = 119 bits (60), Expect = 4e-025
Identities = 123/144 (85%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||||||| ||||||| | ||||||| ||||||||||| |||| ||| |||||
Sbjct: 327 cttgtttgatctcttcatcatgtttgtcaacggcgtcgagcgagacgagcaagaatggaa 386
Query: 458 gaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctgggcactcg 517
||||||||||||||||||||| |||| |||||| |||||||||||||| || |||
Sbjct: 387 gaagatcatctttgaagccggatttagcgattacaaaatcatacctgttcttggtgttcg 446
Query: 518 atccataattgaagtctgcccata 541
|||||| ||||| |||| ||||||
Sbjct: 447 atccatcattgaggtctacccata 470
Score = 85.7 bits (43), Expect = 6e-015
Identities = 109/131 (83%)
Strand = Plus / Plus
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
||||||||||| || ||||||||||| |||||| || | ||||| |||| ||||||||
Sbjct: 109 gtgaagtatgttgctggtgacatgtttgagagcattccaccggcaaacgccgtcttcctt 168
Query: 240 aagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
|||| | || | ||||||||||| ||||| || ||| |||||||||||||||| || |||
Sbjct: 169 aagtgggttttgcatgactggggcgatgctgattgtatcaagatactgaagaattgtaag 228
Query: 300 aaggccatacc 310
|| || |||||
Sbjct: 229 aatgctatacc 239
>gb|CN142079.1|CN142079 WOUND1_3_E12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_3_E12_A002 5', mRNA sequence
Length = 832
Score = 115 bits (58), Expect = 6e-024
Identities = 151/182 (82%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 651 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 710
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 711 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 770
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
|||||||| ||||||| |||||||| ||||||||| | |||||| | | ||||||||||
Sbjct: 771 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcctc 830
Query: 240 aa 241
||
Sbjct: 831 aa 832
>gb|CN150048.1|CN150048 WOUND1_66_C07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_C07_A002 5', mRNA sequence
Length = 815
Score = 115 bits (58), Expect = 6e-024
Identities = 169/206 (82%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| | ||||||||||||
Sbjct: 610 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcagaggcgttcccgcac 669
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 670 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 729
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
|||||||| ||||||| |||||||| ||||||||| | |||||| | | ||||||||||
Sbjct: 730 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggcaaatgttgtcttcctc 789
Query: 240 aagtcgattatacatgactggggtga 265
|||| | || | ||||| ||||||||
Sbjct: 790 aagtgggttctgcatgattggggtga 815
>gb|BG102714.1|BG102714 RHIZ2_36_D11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 632
Score = 111 bits (56), Expect = 1e-022
Identities = 122/144 (84%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||||||| ||||||| | |||| || ||||||||||| |||| ||| |||||
Sbjct: 413 cttgtttgatctcttcatcatgtttgtcaatggcgtcgagcgagacgagcaagaatggaa 472
Query: 458 gaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctgggcactcg 517
||||||||||||||||||||| |||| |||||| |||||||||||||| || |||
Sbjct: 473 gaagatcatctttgaagccggatttagcgattacaaaatcatacctgttcttggtgttcg 532
Query: 518 atccataattgaagtctgcccata 541
|||||| ||||| |||| ||||||
Sbjct: 533 atccatcattgaggtctacccata 556
Score = 85.7 bits (43), Expect = 6e-015
Identities = 109/131 (83%)
Strand = Plus / Plus
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
||||||||||| || ||||||||||| |||||| || | ||||||| || ||||||||
Sbjct: 195 gtgaagtatgttgctggtgacatgtttgagagcattccaccggcagatgccgtcttcctt 254
Query: 240 aagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
|||| | || | ||||||||||| ||||| || ||| |||||||||||||||| || |||
Sbjct: 255 aagtgggttttgcatgactggggcgatgctgattgtatcaagatactgaagaattgtaag 314
Query: 300 aaggccatacc 310
|| || |||||
Sbjct: 315 aaagctatacc 325
>gb|CF433215.1|CF433215 NIT1_25_E08.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_25_E08_A002 5', mRNA sequence
Length = 739
Score = 111 bits (56), Expect = 1e-022
Identities = 107/124 (86%)
Strand = Plus / Plus
Query: 35 cgtcttccaggggatcagctccctcgtcgacgtcggcggcgggtttggtggcgccacaca 94
|||||| |||||||| |||||||| |||||||||| ||||||| | || ||||| || ||
Sbjct: 590 cgtctttcaggggattagctcccttgtcgacgtcgccggcgggctcggcggcgctaccca 649
Query: 95 ggccatcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgt 154
| |||||||||| ||||||||||| |||||||||||||||| |||||||| |||| ||
Sbjct: 650 gaccatcgcgaaggcgttcccgcatgtggagtgcagcgtgctggatctcccacacgttgt 709
Query: 155 cgcc 158
||||
Sbjct: 710 cgcc 713
>gb|BZ338207.1|BZ338207 ia93g08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia93g08 5', DNA sequence
Length = 392
Score = 105 bits (53), Expect = 6e-021
Identities = 106/123 (86%), Gaps = 3/123 (2%)
Strand = Plus / Plus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||| |
Sbjct: 246 gattatgcatgactggggtgatgccgaatgtgtcaaaatattgaagaactgcaagaagac 305
Query: 305 cataccagctca---aggaggcaaggtgataatactggatatcgtggttggagcaggatc 361
||| || |||| |||||| ||||| |||||| ||||||| ||||||||| |||| ||
Sbjct: 306 tatagcatctcaaggaggaggaaaggtaataatattggatatggtggttggaacagggtc 365
Query: 362 gtc 364
|||
Sbjct: 366 gtc 368
Score = 40.1 bits (20), Expect = 0.30
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 207 gagagcgtttcgtcggcagacgctgtcttcct 238
|||||| || |||||||| |||||||||||||
Sbjct: 15 gagagcattccgtcggcaaacgctgtcttcct 46
>gb|CW092078.1|CW092078 104_454_10998930_116_33041_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998930, DNA
sequence
Length = 707
Score = 105 bits (53), Expect = 6e-021
Identities = 106/123 (86%), Gaps = 3/123 (2%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||| |
Sbjct: 144 gattatgcatgactggggtgatgccgaatgtgtcaaaatattgaagaactgcaagaagac 85
Query: 305 cataccagctca---aggaggcaaggtgataatactggatatcgtggttggagcaggatc 361
||| || |||| |||||| ||||| |||||| ||||||| ||||||||| |||| ||
Sbjct: 84 tatagcatctcaaggaggaggaaaggtaataatattggatatggtggttggaacagggtc 25
Query: 362 gtc 364
|||
Sbjct: 24 gtc 22
Score = 79.8 bits (40), Expect = 4e-013
Identities = 160/200 (80%)
Strand = Plus / Minus
Query: 39 ttccaggggatcagctccctcgtcgacgtcggcggcgggtttggtggcgccacacaggcc 98
||||| ||||| ||||| || || ||||||| ||||||| |||||||| | ||| |
Sbjct: 543 ttccaagggattagctctcttgtggacgtcgccggcgggcacggtggcgcggcgcagact 484
Query: 99 atcgcgaaagcgttcccgcacctggagtgcagcgtgctagatctcccgaacgtcgtcgcc 158
||||| || ||||||||||| |||||||||||||||| |||||| | |||| |||||
Sbjct: 483 atcgcaaaggcgttcccgcatgtggagtgcagcgtgctggatctctcacacgttatcgcc 424
Query: 159 ggcgctcctgctgataccgccgtgaagtatgtcgccggtgacatgttcgagagcgtttcg 218
| ||||| || | ||| |||||||| ||||||| |||||||| |||||| || ||
Sbjct: 423 agtgctcccactaacaccaatgtgaagtacatcgccggagacatgtttgagagcattccg 364
Query: 219 tcggcagacgctgtcttcct 238
|||||| |||||||||||||
Sbjct: 363 tcggcaaacgctgtcttcct 344
>gb|CW473754.1|CW473754 fsbb001f229e09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229e09, DNA
sequence
Length = 683
Score = 105 bits (53), Expect = 6e-021
Identities = 141/169 (83%), Gaps = 6/169 (3%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||| |
Sbjct: 358 gattatgcatgactggggtgatgccgaatgtgtcaaaatattgaagaactgcaagaagac 299
Query: 305 cataccagctcaaggaggc---aaggtgataatactggatatcgtggttggagcaggatc 361
||| || |||||||||| ||||| |||||| ||||||| ||||||||| |||| ||
Sbjct: 298 tatagcatctcaaggaggaggaaaggtaataatattggatatggtggttggaacagggtc 239
Query: 362 gtcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatctc 410
||| || |||| |||| | |||||||||||| ||||||||||||
Sbjct: 238 gtcatc---cgacgagaagcatgtggagacgcaaatattgtttgatctc 193
Score = 101 bits (51), Expect = 1e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 429 ggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatct 488
|||| |||||||||||| | ||||||||| ||||| || |||||||| || |||| |
Sbjct: 168 ggtgccgagcgagatgaactagagtggaaaaagattatttttgaagcgggatttagccat 109
Query: 489 tacaagatcatacctgttctgggcactcgatccataattgaagtctgcccatagaaacca 548
|||||||||||||||||||| || |||||||||||||| || |||| |||||||||| ||
Sbjct: 108 tacaagatcatacctgttctaggtactcgatccataatcgaggtctacccatagaaatca 49
Query: 549 ata 551
|||
Sbjct: 48 ata 46
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcct 238
|||||||| ||||||| |||||||| |||||| | |||||||| |||||||||||||
Sbjct: 616 gtgaagtacatcgccggagacatgtttgagagcatcccgtcggcaaacgctgtcttcct 558
>gb|CN144196.1|CN144196 WOUND1_20_F05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_20_F05_A002 5', mRNA sequence
Length = 771
Score = 105 bits (53), Expect = 6e-021
Identities = 137/165 (83%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 599 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 658
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 659 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 718
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggca 224
|||||||| ||||||| |||||||| ||||||||| | ||||||
Sbjct: 719 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggca 763
>gb|CN146754.1|CN146754 WOUND1_43_B07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_43_B07_A002 5', mRNA sequence
Length = 775
Score = 105 bits (53), Expect = 6e-021
Identities = 137/165 (83%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 599 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 658
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 659 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 718
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggca 224
|||||||| ||||||| |||||||| ||||||||| | ||||||
Sbjct: 719 gtgaagtacatcgccggcgacatgtttgagagcgttccatcggca 763
>gb|BG052711.1|BG052711 RHIZ2_28_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 469
Score = 103 bits (52), Expect = 2e-020
Identities = 121/144 (84%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||||||| ||||||| | |||| || ||||||||| | |||| ||| |||||
Sbjct: 224 cttgtttgatctcttcatcatgtttgtcaatggcgtcgagcgatacgagcaagaatggaa 283
Query: 458 gaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctgggcactcg 517
||||||||||||||||||||| |||| |||||| |||||||||||||| || |||
Sbjct: 284 gaagatcatctttgaagccggatttagcgattacaaaatcatacctgttcttggtgttcg 343
Query: 518 atccataattgaagtctgcccata 541
|||||| ||||| |||| ||||||
Sbjct: 344 atccatcattgaggtctacccata 367
Score = 67.9 bits (34), Expect = 1e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtttcgtcggcagacgctgtcttcctc 239
||||||||||| || ||||||||||| |||||| || | ||||||| || || |||||
Sbjct: 6 gtgaagtatgttgctggtgacatgtttgagagcattcccccggcagatgccgttttcctt 65
Query: 240 aagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaa 289
|||| | || | ||||||||||| ||||| || ||| |||||||||||||
Sbjct: 66 aagtgggttttgcatgactggggcgatgctgattgtatcaagatactgaa 115
>gb|CN148348.1|CN148348 WOUND1_55_G02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_G02_A002 5', mRNA sequence
Length = 814
Score = 103 bits (52), Expect = 2e-020
Identities = 130/156 (83%)
Strand = Plus / Plus
Query: 60 gtcgacgtcggcggcgggtttggtggcgccacacaggccatcgcgaaagcgttcccgcac 119
|||||||||| ||||||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct: 654 gtcgacgtcgccggcgggctcggcggcgctacccaggccatcgcaaaggcgttcccgcac 713
Query: 120 ctggagtgcagcgtgctagatctcccgaacgtcgtcgccggcgctcctgctgataccgcc 179
| || || || ||||| |||||||| ||||| ||||||| ||||| |||| |||| |
Sbjct: 714 atcgaatgtagtgtgctcgatctcccaaacgttgtcgccgttgctccgactgacaccgac 773
Query: 180 gtgaagtatgtcgccggtgacatgttcgagagcgtt 215
|||||||| ||||||| |||||||| |||||||||
Sbjct: 774 gtgaagtacatcgccggcgacatgtttgagagcgtt 809
>gb|CN151846.1|CN151846 WOUND1_78_C02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_78_C02_A002 3', mRNA sequence
Length = 363
Score = 103 bits (52), Expect = 2e-020
Identities = 121/144 (84%)
Strand = Plus / Plus
Query: 398 cttgtttgatctctacatcatgactatcaacggtgtcgagcgagatgagcgagagtggaa 457
|||||||||||| | ||||||| | ||||||| ||||||||||| |||| ||| |||||
Sbjct: 77 cttgtttgatcttttcatcatgtttgtcaacggcgtcgagcgagacgagcaagaatggaa 136
Query: 458 gaagatcatctttgaagccgggtttacatcttacaagatcatacctgttctgggcactcg 517
|||||||||||| |||||||| |||| |||||| |||||||||||||| || |||
Sbjct: 137 gaagatcatcttggaagccggatttagcgattacaaaatcatacctgttcttggtgttcg 196
Query: 518 atccataattgaagtctgcccata 541
|||||| ||||| |||| ||||||
Sbjct: 197 atccatcattgaggtctacccata 220
>gb|BZ338208.1|BZ338208 ia93g08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia93g08 5', DNA sequence
Length = 689
Score = 101 bits (51), Expect = 1e-019
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 429 ggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatct 488
|||| |||||||||||| | ||||||||| ||||| || |||||||| || |||| |
Sbjct: 468 ggtgccgagcgagatgaactagagtggaaaaagattatttttgaagcgggatttagccat 409
Query: 489 tacaagatcatacctgttctgggcactcgatccataattgaagtctgcccatagaaacca 548
|||||||||||||||||||| || |||||||||||||| || |||| |||||||||| ||
Sbjct: 408 tacaagatcatacctgttctaggtactcgatccataatcgaggtctacccatagaaatca 349
Query: 549 ata 551
|||
Sbjct: 348 ata 346
Score = 99.6 bits (50), Expect = 4e-019
Identities = 140/169 (82%), Gaps = 6/169 (3%)
Strand = Plus / Minus
Query: 245 gattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
|||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||| |
Sbjct: 658 gattatgcatgactggggtgatgccgaatgtgtcaaaatattgaagaactgcaagaagac 599
Query: 305 cataccagctcaaggaggc---aaggtgataatactggatatcgtggttggagcaggatc 361
||| || |||||||||| ||||| |||||| |||||| ||||||||| |||| ||
Sbjct: 598 tatagcatctcaaggaggaggaaaggtaataatatnggatatggtggttggaacagggtc 539
Query: 362 gtcgtcgtgcgaccggaagaacgtggagacgcaatgcttgtttgatctc 410
||| || |||| |||| | |||||||||||| ||||||||||||
Sbjct: 538 gtcatc---cgacgagaagcatgtggagacgcaaatattgtttgatctc 493
>gb|AI724512.1|AI724512 RHIZ1_37_C02.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 474
Score = 97.6 bits (49), Expect = 1e-018
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 429 ggtgtcgagcgagatgagcgagagtggaagaagatcatctttgaagccgggtttacatct 488
|||| |||||||||||| | ||||||||| ||||| || |||||||| || |||| |
Sbjct: 171 ggtgccgagcgagatgaactagagtggaaaaagattatttttgaagcgggatttagccat 230
Query: 489 tacaagatcatacctgttctgggcactcgatccataattgaagtctgcccatagaaa 545
|||||||||||||||||||| || |||||||||||||| || |||| ||||||||||
Sbjct: 231 tacaagatcatacctgttctaggtactcgatccataatcgaggtctacccatagaaa 287
Score = 58.0 bits (29), Expect = 1e-006
Identities = 79/95 (83%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 267 gccgactgtgtcaagatactgaagaactgcaagaaggccataccagctc---aaggaggc 323
||||| ||| |||| ||| ||||||||||||||||||| ||| || ||| |||||||
Sbjct: 3 gccgaatgtatcaaaatattgaagaactgcaagaaggctatagcatctcaaaaaggaggg 62
Query: 324 aaggtgataatactggatatcgtggttggagcagg 358
||| | |||||| ||||||| ||||||||| ||||
Sbjct: 63 aagataataatattggatatggtggttggaacagg 97
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 253,006
Number of Sequences: 832831
Number of extensions: 253006
Number of successful extensions: 72213
Number of sequences better than 0.5: 136
Number of HSP's better than 0.5 without gapping: 131
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 71895
Number of HSP's gapped (non-prelim): 303
length of query: 791
length of database: 491,359,669
effective HSP length: 20
effective length of query: 771
effective length of database: 474,703,049
effective search space: 365996050779
effective search space used: 365996050779
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)