BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.1
(1136 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorgh... 783 0.0
gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sor... 617 e-174
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 484 e-135
gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation... 252 6e-065
gb|AW565306.1|AW565306 LG1_342_G08.g1_A002 Light Grown 1 (L... 240 2e-061
gb|BE918689.1|BE918689 FM1_1_D02.g1_A003 Floral-Induced Mer... 240 2e-061
gb|BF656799.1|BF656799 OV2_23_A09.g1_A002 Ovary 2 (OV2) Sor... 240 2e-061
gb|BG053597.1|BG053597 RHIZ2_11_C10.g1_A003 Rhizome2 (RHIZ2... 240 2e-061
gb|BG103538.1|BG103538 RHIZ2_37_G03.g1_A003 Rhizome2 (RHIZ2... 240 2e-061
gb|BG241621.1|BG241621 RHIZ2_17_G12.g1_A003 Rhizome2 (RHIZ2... 240 2e-061
gb|BG465298.1|BG465298 EM1_74_E07.g1_A002 Embryo 1 (EM1) So... 240 2e-061
gb|BI245500.1|BI245500 IP1_66_C03.g1_A002 Immature pannicle... 240 2e-061
gb|BE364812.2|BE364812 PI1_16_E11.g1_A002 Pathogen induced ... 240 2e-061
gb|BM318696.1|BM318696 PI1_16_E11.b9_A002 Pathogen induced ... 240 2e-061
gb|BM329403.1|BM329403 PIC1_37_E01.g1_A002 Pathogen-infecte... 240 2e-061
gb|CD204940.1|CD204940 HS1_11_D02.b1_A012 Heat-shocked seed... 240 2e-061
gb|CN127152.1|CN127152 RHOH1_21_G12.b1_A002 Acid- and alkal... 240 2e-061
gb|CN148130.1|CN148130 WOUND1_54_H01.b1_A002 Wounded leaves... 240 2e-061
gb|CN152450.1|CN152450 WOUND1_82_D06.b1_A002 Wounded leaves... 240 2e-061
gb|CX609487.1|CX609487 ANR1_13_B05.b1_A002 Anaerobic roots ... 240 2e-061
gb|CX611720.1|CX611720 ANR1_26_G07.b1_A002 Anaerobic roots ... 240 2e-061
gb|CX613756.1|CX613756 GABR1_10_B09.b1_A002 GA- or brassino... 240 2e-061
gb|CX613776.1|CX613776 GABR1_10_D06.b1_A002 GA- or brassino... 240 2e-061
gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Mer... 232 6e-059
gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation... 155 1e-035
gb|BG240961.1|BG240961 OV1_40_D10.g1_A002 Ovary 1 (OV1) Sor... 137 3e-030
gb|BG240970.1|BG240970 OV1_40_E09.g1_A002 Ovary 1 (OV1) Sor... 137 3e-030
gb|BG241283.1|BG241283 OV1_40_D10.b1_A002 Ovary 1 (OV1) Sor... 133 4e-029
gb|BG241293.1|BG241293 OV1_40_E09.b1_A002 Ovary 1 (OV1) Sor... 133 4e-029
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 125 1e-026
gb|BG047809.1|BG047809 OV1_28_A12.b1_A002 Ovary 1 (OV1) Sor... 115 9e-024
gb|BG048132.1|BG048132 OV1_28_A12.g1_A002 Ovary 1 (OV1) Sor... 115 9e-024
gb|CN127243.1|CN127243 RHOH1_21_G12.g3_A002 Acid- and alkal... 115 9e-024
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 90 5e-016
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 90 5e-016
gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorgh... 90 5e-016
gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adap... 78 2e-012
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 78 2e-012
gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum m... 68 2e-009
gb|CW346635.1|CW346635 fsbb001f006d20f0 Sorghum methylation... 68 2e-009
gb|CW346636.1|CW346636 fsbb001f006d20k0 Sorghum methylation... 68 2e-009
gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorgh... 60 5e-007
gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2... 60 5e-007
gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorgh... 48 0.002
gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum met... 48 0.002
gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorgh... 48 0.002
gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorgh... 48 0.002
gb|BG411904.1|BG411904 OV2_39_F01.g1_A002 Ovary 2 (OV2) Sor... 48 0.002
gb|CW103468.1|CW103468 104_472_11011905_148_34436_045 Sorgh... 44 0.028
gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorgh... 44 0.028
gb|CW250634.1|CW250634 104_712_11223498_116_35053_065 Sorgh... 44 0.028
gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum b... 44 0.028
gb|CL179926.1|CL179926 104_389_10895643_116_31908_171 Sorgh... 42 0.11
gb|CW078143.1|CW078143 104_389_10895643_148_31907_171 Sorgh... 42 0.11
gb|BZ421646.1|BZ421646 hz32f10.b1 WGS-SbicolorF (DH5a methy... 40 0.44
gb|CL163406.1|CL163406 104_356_10807126_114_31810_262 Sorgh... 40 0.44
gb|CW099634.1|CW099634 104_466_11003657_148_34378_069 Sorgh... 40 0.44
gb|CW129556.1|CW129556 104_511_11114631_116_34766_054 Sorgh... 40 0.44
gb|CW202680.1|CW202680 104_629_11185220_148_37061_080 Sorgh... 40 0.44
gb|CW213095.1|CW213095 104_644_11191367_148_37027_088 Sorgh... 40 0.44
gb|CW252763.1|CW252763 104_716_11224692_148_35101_048 Sorgh... 40 0.44
gb|CW303421.1|CW303421 104_787_11465229_116_35676_081 Sorgh... 40 0.44
gb|CW337184.1|CW337184 104_836_11484012_116_36111_034 Sorgh... 40 0.44
gb|CX611468.1|CX611468 ANR1_24_G08.g1_A002 Anaerobic roots ... 40 0.44
>gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 653
Score = 783 bits (395), Expect = 0.0
Identities = 503/539 (93%)
Strand = Plus / Plus
Query: 313 ctagcacttcctgccgacgcggcagttgagcgcgccggcgtacctggtgagcgactcggc 372
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 115 ctagcacttcttgccgacgcggcagttgagcgcgccggcgtacctcgtgagcaactcggc 174
Query: 373 gtactggccgcccttggcctggatgaggtcgagcctgtcgtacttgcgctcgttctggcc 432
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 175 gtactgtccgcccttggcctggatgaggtcgagcctgtcgaaccggcgctcgttctcgcc 234
Query: 433 gccggactggttgaagaaggcgccgttgaggaacaggtcgtcctgcgacttccacaccca 492
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 235 gccggactggttgaagaaggccccattgaggaacaggtcgtcctgcgacttccacaccca 294
Query: 493 gttcttgtactcgctgtactgcgtgtactcccgcttggtcacctccttgaacctgctgtc 552
|| |||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||
Sbjct: 295 gtccttgtactcgctgtacggcgtgtactccctcttggtcacctccttgaacctcccgtc 354
Query: 553 gtcgacggcgcggaagcggttgccctggctgatgatggtggggttccggctgccgccgat 612
||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct: 355 gtcgacggcgcggaaccggttcccctggctgatgatggtagggttctggctgccgccgat 414
Query: 613 ggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 415 ggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccatggcggca 474
Query: 673 gcgcggcatccgctgcaccagccccttgccgaagtggttgaaggcgacggtgacctgcat 732
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 475 gcgcggcatccgctgcaccagcccctttccgaagtggttgaacgccacggtgacctgcat 534
Query: 733 ctccctgtccttggacgcggcgtcgctggccccgaacagcataacgtggtcgtgcctcgt 792
| || |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 535 cgccttgtccttgacggcggcgtcgctggcaccgaacagcatcacgtggtcgtgcctggt 594
Query: 793 gaagtggccgttggagacggtgatggcggtggagccgtccaccgcgtccaccagcccgt 851
||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 595 gaagtggccgttggagatggtcacggcggtggagccgtccaccacgtccaccagcccgt 653
>gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 617 bits (311), Expect = e-174
Identities = 377/399 (94%)
Strand = Plus / Minus
Query: 313 ctagcacttcctgccgacgcggcagttgagcgcgccggcgtacctggtgagcgactcggc 372
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 399 ctagcacttcttgccgacgcggcagttgagcgcgccggcgtacctcgtgagcaactcggc 340
Query: 373 gtactggccgcccttggcctggatgaggtcgagcctgtcgtacttgcgctcgttctggcc 432
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 339 gtactgtccgcccttggcctggatgaggtcgagcctgtcgaaccggcgctcgttctcgcc 280
Query: 433 gccggactggttgaagaaggcgccgttgaggaacaggtcgtcctgcgacttccacaccca 492
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 279 gccggactggttgaagaaggccccattgaggaacaggtcgtcctgcgacttccacaccca 220
Query: 493 gttcttgtactcgctgtactgcgtgtactcccgcttggtcacctccttgaacctgctgtc 552
|| |||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||
Sbjct: 219 gtccttgtactcgctgtacggcgtgtactccctcttggtcacctccttgaacctcccgtc 160
Query: 553 gtcgacggcgcggaagcggttgccctggctgatgatggtggggttccggctgccgccgat 612
||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct: 159 gtcgacggcgcggaaccggttcccctggctgatgatggtagggttctggctgccgccgat 100
Query: 613 ggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 99 ggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccatggcggca 40
Query: 673 gcgcggcatccgctgcaccagccccttgccgaagtggtt 711
||||||||||||||||||||||||||| |||||||||||
Sbjct: 39 gcgcggcatccgctgcaccagcccctttccgaagtggtt 1
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 484 bits (244), Expect = e-135
Identities = 328/356 (92%)
Strand = Plus / Minus
Query: 749 gcggcgtcgctggccccgaacagcataacgtggtcgtgcctcgtgaagtggccgttggag 808
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 609 gcggcgtcgctggcaccgaacagcatcacgtggtcgtgcctggtgaagtggccgttggag 550
Query: 809 acggtgatggcggtggagccgtccaccgcgtccaccagcccgtccgcgcagctgctcatg 868
| ||| | ||||||||||||||||||| |||||||||||||||| |||||||| | |||
Sbjct: 549 atggtcacggcggtggagccgtccaccacgtccaccagcccgtcggcgcagctccgcatc 490
Query: 869 gacaggtggtcgatccagatatcgctggaccccatcacggagacgccgtcgccgtcgctc 928
|||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 gacacgtggtcgatccagatgtcgctggaccccatcacggagaccccgtcgccgtcgctc 430
Query: 929 tccccgcgcacgccccagtggtgctgcgagtcccggatcgcgccgccgccgtgcgccgcg 988
|||||||| | |||||||||||||| |||||||| |||| ||||||||||| ||| |||
Sbjct: 429 tccccgcggaggccccagtggtgcttcgagtccctgatcacgccgccgccgcgcggggcg 370
Query: 989 gcgtcgtggacgtgcaggttgtggaggatcacgttgcgcacgttctgcagcgtgatctgc 1048
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 369 gcgtcgtggatgtggaggttgtggaggatcacgttccgcacgttctgcagcgtgatctgc 310
Query: 1049 gcgcccacgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcac 1104
|||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 309 gcgcccacgacgtgcacctgcgcgccgcgcccgtcgatggtcttgtcgctggtcac 254
>gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209b20, DNA
sequence
Length = 495
Score = 252 bits (127), Expect = 6e-065
Identities = 403/495 (81%)
Strand = Plus / Plus
Query: 424 gttctggccgccggactggttgaagaaggcgccgttgaggaacaggtcgtcctgcgactt 483
|||||| |||||||||| |||||||||||||||||| | | | ||| ||||||||||
Sbjct: 1 gttctgcccgccggactcgttgaagaaggcgccgttcatcatgacgtctccctgcgactt 60
Query: 484 ccacacccagttcttgtactcgctgtactgcgtgtactcccgcttggtcacctccttgaa 543
||| ||||| | |||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct: 61 ccagacccactccttgtagtccttgtacgccgtgtactccctcttggtcacctccttggc 120
Query: 544 cctgctgtcgtcgacggcgcggaagcggttgccctggctgatgatggtggggttccggct 603
|| |||||| |||| ||| ||||| |||||||||||||||||||||||| | |
Sbjct: 121 gttgggatcgtcgggggcgatgaaccggttcccctggctgatgatggtggggttcttgtt 180
Query: 604 gccgccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagcc 663
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 cccgccgatggcgtacatgatccagtgcgtgtagtcgttgttcaccacgtggaagaaccc 240
Query: 664 gtgacggcagcgcggcatccgctgcaccagccccttgccgaagtggttgaaggcgacggt 723
| ||||| ||||||||||||||||||||||| |||||||||||||||| || || ||
Sbjct: 241 ggaccggcaccgcggcatccgctgcaccagccctctgccgaagtggttgaacgccaccgt 300
Query: 724 gacctgcatctccctgtccttggacgcggcgtcgctggccccgaacagcataacgtggtc 783
|| ||||||| || ||||| | | ||| ||||| ||||||||||| ||||||||
Sbjct: 301 gatctgcatcacctcgtcctgcgggttgtcgttgctggggccgaacagcatcacgtggtc 360
Query: 784 gtgcctcgtgaagtggccgttggagacggtgatggcggtggagccgtccaccgcgtccac 843
||| ||||||||||| |||||| || ||||| || || || |||| |||| |||| |
Sbjct: 361 gtggtgcgtgaagtggctgttggacaccgtgatcgccgtcgacccgttcaccacgtcgat 420
Query: 844 cagcccgtccgcgcagctgctcatggacaggtggtcgatccagatatcgctggaccccat 903
|||||||| ||||| || |||||| | |||||||||||| | | |||||||| ||
Sbjct: 421 gagcccgtcggcgcacctcgacatggagacgtggtcgatccacacgtggctggaccacag 480
Query: 904 cacggagacgccgtc 918
||| |||| ||||||
Sbjct: 481 caccgagatgccgtc 495
>gb|AW565306.1|AW565306 LG1_342_G08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 686
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 261
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 201
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 200 ggatgcatggagtgaga 184
>gb|BE918689.1|BE918689 FM1_1_D02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 257
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 256 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 197
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 196 ggatgcatggagtgaga 180
>gb|BF656799.1|BF656799 OV2_23_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 633
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 235
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 234 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 175
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 174 ggatgcatggagtgaga 158
>gb|BG053597.1|BG053597 RHIZ2_11_C10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 589
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 156
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 155 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 96
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 95 ggatgcatggagtgaga 79
>gb|BG103538.1|BG103538 RHIZ2_37_G03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 568
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 170
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 169 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 110
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 109 ggatgcatggagtgaga 93
>gb|BG241621.1|BG241621 RHIZ2_17_G12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 619
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 220
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 219 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 160
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 159 ggatgcatggagtgaga 143
>gb|BG465298.1|BG465298 EM1_74_E07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 630
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 220
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 219 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 160
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 159 ggatgcatggagtgaga 143
>gb|BI245500.1|BI245500 IP1_66_C03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 503
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 78
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 77 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 18
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 17 ggatgcatggagtgaga 1
>gb|BE364812.2|BE364812 PI1_16_E11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 126
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 125 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 66
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 65 ggatgcatggagtgaga 49
>gb|BM318696.1|BM318696 PI1_16_E11.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 126
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 125 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 66
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 65 ggatgcatggagtgaga 49
>gb|BM329403.1|BM329403 PIC1_37_E01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 561
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 136
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 135 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 76
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 75 ggatgcatggagtgaga 59
>gb|CD204940.1|CD204940 HS1_11_D02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_11_D02_A012 3', mRNA sequence
Length = 624
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 186
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 185 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 126
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 125 ggatgcatggagtgaga 109
>gb|CN127152.1|CN127152 RHOH1_21_G12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G12_A002 3', mRNA sequence
Length = 823
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 403
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 402 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 343
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 342 ggatgcatggagtgaga 326
>gb|CN148130.1|CN148130 WOUND1_54_H01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_54_H01_A002 3', mRNA sequence
Length = 766
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 346
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 345 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 286
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 285 ggatgcatggagtgaga 269
>gb|CN152450.1|CN152450 WOUND1_82_D06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_82_D06_A002 3', mRNA sequence
Length = 788
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 368
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 367 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 308
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 307 ggatgcatggagtgaga 291
>gb|CX609487.1|CX609487 ANR1_13_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_13_B05_A002 3', mRNA sequence
Length = 857
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 412
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 411 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 352
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 351 ggatgcatggagtgaga 335
>gb|CX611720.1|CX611720 ANR1_26_G07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_G07_A002 3', mRNA sequence
Length = 812
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 344
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 343 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 284
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 283 ggatgcatggagtgaga 267
>gb|CX613756.1|CX613756 GABR1_10_B09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_10_B09_A002 3', mRNA sequence
Length = 444
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 81
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 80 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 21
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 20 ggatgcatggagtgaga 4
>gb|CX613776.1|CX613776 GABR1_10_D06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_10_D06_A002 3', mRNA sequence
Length = 712
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccacaagtcaaatctcaccacccaactatctgaaccagtctgtgtgataaaaagtctgtc 288
Query: 61 cacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 287 cacccatgctcggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaat 228
Query: 121 ggatgcatggagtgaga 137
|||||||||||||||||
Sbjct: 227 ggatgcatggagtgaga 211
>gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 232 bits (117), Expect = 6e-059
Identities = 240/281 (85%)
Strand = Plus / Minus
Query: 385 cttggcctggatgaggtcgagcctgtcgtacttgcgctcgttctggccgccggactggtt 444
||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct: 286 cttggccgggatgaagtcgagctcgtcgtacttgcgctcgttctgcccgccggactcgtt 227
Query: 445 gaagaaggcgccgttgaggaacaggtcgtcctgcgacttccacacccagttcttgtactc 504
||||||||||||||| | | | ||| ||||||||||||||||||| | |||||| ||
Sbjct: 226 gaagaaggcgccgttcatcatgacgtctccctgcgacttccacacccactccttgtagtc 167
Query: 505 gctgtactgcgtgtactcccgcttggtcacctccttgaacctgctgtcgtcgacggcgcg 564
||||| ||||||||||| |||||||||||||||| || |||||| ||||
Sbjct: 166 cttgtacgccgtgtactccctcttggtcacctccttggcgttgggatcgtcgggggcgat 107
Query: 565 gaagcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgag 624
||| ||||| |||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 106 gaaccggttcccctggctgatgatggtggggttcttgttcccgccgatggcgtacatgat 47
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaagaagccgt 665
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 46 ccagtgcgtgtagtcgttgttcaccacgtggaagaacccgt 6
>gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091j18, DNA
sequence
Length = 684
Score = 155 bits (78), Expect = 1e-035
Identities = 144/166 (86%)
Strand = Plus / Plus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 445 agcggttcccctggctgatgatggtcggcgccttgctgccgccgatggcgtacatgagcc 504
Query: 627 agtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggcagcgcggcatccgct 686
||||||||||||||||||| || ||||||||||| || ||||| | |||||||| ||
Sbjct: 505 agtgcgtgtagtcgttgttgacgacgtggaagaacccccagcggcacctcggcatcctct 564
Query: 687 gcaccagccccttgccgaagtggttgaaggcgacggtgacctgcat 732
|||| || || ||||||||||||||||||||||||||| ||||||
Sbjct: 565 gcacgaggcctctgccgaagtggttgaaggcgacggtgatctgcat 610
>gb|BG240961.1|BG240961 OV1_40_D10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 603
Score = 137 bits (69), Expect = 3e-030
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 385 cttggcctggatgaggtcgagcctgtcgtacttgcgctcgttctggccgccggactggtt 444
||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct: 315 cttggccgggatgaagtcgagctcgtcgtacttgcgctcgttctgcccgccggactcgtt 256
Query: 445 gaagaaggcgccgttgaggaacaggtcgtcctgcgacttccacacccagttcttgtactc 504
||||||||||||||| | | | ||| ||||||||||||||||||| | |||||| ||
Sbjct: 255 gaagaaggcgccgttcatcatgacgtctccctgcgacttccacacccactccttgtagtc 196
Query: 505 gctgtactgcgtgtactcccgcttggtcacctccttg 541
||||| ||||||||||| ||||||||||||||||
Sbjct: 195 cttgtacgccgtgtactccctcttggtcacctccttg 159
>gb|BG240970.1|BG240970 OV1_40_E09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 137 bits (69), Expect = 3e-030
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 385 cttggcctggatgaggtcgagcctgtcgtacttgcgctcgttctggccgccggactggtt 444
||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct: 314 cttggccgggatgaagtcgagctcgtcgtacttgcgctcgttctgcccgccggactcgtt 255
Query: 445 gaagaaggcgccgttgaggaacaggtcgtcctgcgacttccacacccagttcttgtactc 504
||||||||||||||| | | | ||| ||||||||||||||||||| | |||||| ||
Sbjct: 254 gaagaaggcgccgttcatcatgacgtctccctgcgacttccacacccactccttgtagtc 195
Query: 505 gctgtactgcgtgtactcccgcttggtcacctccttg 541
||||| ||||||||||| ||||||||||||||||
Sbjct: 194 cttgtacgccgtgtactccctcttggtcacctccttg 158
>gb|BG241283.1|BG241283 OV1_40_D10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 133 bits (67), Expect = 4e-029
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 387 tggcctggatgaggtcgagcctgtcgtacttgcgctcgttctggccgccggactggttga 446
||||| |||||| ||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 526 tggccgggatgaagtcgagctcgtcgtacttgcgctcgttctgcccgccggactcgttga 467
Query: 447 agaaggcgccgttgaggaacaggtcgtcctgcgacttccacacccagttcttgtactcgc 506
||||||||||||| | | | ||| ||||||||||||||||||| | |||||| ||
Sbjct: 466 agaaggcgccgttcatcatgacgtctccctgcgacttccacacccactccttgtagtcct 407
Query: 507 tgtactgcgtgtactcccgcttggtcacctccttg 541
||||| ||||||||||| ||||||||||||||||
Sbjct: 406 tgtacgccgtgtactccctcttggtcacctccttg 372
>gb|BG241293.1|BG241293 OV1_40_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 133 bits (67), Expect = 4e-029
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 387 tggcctggatgaggtcgagcctgtcgtacttgcgctcgttctggccgccggactggttga 446
||||| |||||| ||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 526 tggccgggatgaagtcgagctcgtcgtacttgcgctcgttctgcccgccggactcgttga 467
Query: 447 agaaggcgccgttgaggaacaggtcgtcctgcgacttccacacccagttcttgtactcgc 506
||||||||||||| | | | ||| ||||||||||||||||||| | |||||| ||
Sbjct: 466 agaaggcgccgttcatcatgacgtctccctgcgacttccacacccactccttgtagtcct 407
Query: 507 tgtactgcgtgtactcccgcttggtcacctccttg 541
||||| ||||||||||| ||||||||||||||||
Sbjct: 406 tgtacgccgtgtactccctcttggtcacctccttg 372
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 125 bits (63), Expect = 1e-026
Identities = 141/167 (84%)
Strand = Plus / Plus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct: 33 agcggttgccctggctgttgatggtggggtttgcgctgccgccgatggcgtacatctccc 92
Query: 627 agtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggcagcgcggcatccgct 686
| ||||||||||||||| || | ||||||| | || | ||||| |||||||||||||
Sbjct: 93 acgacgtgtagtcgttgttgacgatgtggaagtaccctcgccggcatcgcggcatccgct 152
Query: 687 gcaccagccccttgccgaagtggttgaaggcgacggtgacctgcatc 733
|||||||||| |||||| ||||||| |||| |||||||||||||
Sbjct: 153 gcaccagcccggggccgaaccggttgaacgcgatggtgacctgcatc 199
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 991 gtcgtggacgtgcaggttgtggaggatcacgttgcgcacgttctgcagcgtgat 1044
|||||||||||||| |||||||| |||||||||| ||||| ||||||||||||
Sbjct: 457 gtcgtggacgtgcacgttgtggatgatcacgttggacacgtactgcagcgtgat 510
Score = 50.1 bits (25), Expect = 5e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcac 1104
|||||||||| |||| || ||||||||||||||||||| |||| ||||
Sbjct: 528 cgatgtgcacgcgcgcgccccgcccgtcgatggtcttgtagctgttcac 576
>gb|BG047809.1|BG047809 OV1_28_A12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 312
Score = 115 bits (58), Expect = 9e-024
Identities = 70/74 (94%)
Strand = Plus / Minus
Query: 313 ctagcacttcctgccgacgcggcagttgagcgcgccggcgtacctggtgagcgactcggc 372
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 79 ctagcacttcttgccgacgcggcagttgagcgcgccggcgtacctcgtgagcaactcggc 20
Query: 373 gtactggccgccct 386
|||||| |||||||
Sbjct: 19 gtactgtccgccct 6
>gb|BG048132.1|BG048132 OV1_28_A12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 234
Score = 115 bits (58), Expect = 9e-024
Identities = 70/74 (94%)
Strand = Plus / Minus
Query: 313 ctagcacttcctgccgacgcggcagttgagcgcgccggcgtacctggtgagcgactcggc 372
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 79 ctagcacttcttgccgacgcggcagttgagcgcgccggcgtacctcgtgagcaactcggc 20
Query: 373 gtactggccgccct 386
|||||| |||||||
Sbjct: 19 gtactgtccgccct 6
>gb|CN127243.1|CN127243 RHOH1_21_G12.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G12_A002 5', mRNA sequence
Length = 836
Score = 115 bits (58), Expect = 9e-024
Identities = 64/66 (96%)
Strand = Plus / Minus
Query: 72 ggtactttctcccttgtttgtcaccataacatgatcccaacgcatcaatggatgcatgga 131
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 836 ggtactttttcccttgtttgtcaccataacatgatcccaatgcatcaatggatgcatgga 777
Query: 132 gtgaga 137
||||||
Sbjct: 776 gtgaga 771
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 89.7 bits (45), Expect = 5e-016
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcac 1104
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 442 cgatgtgcacctgcgcgccgcgcccgtcgatggtcttgtcgctgctcac 394
Score = 60.0 bits (30), Expect = 5e-007
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 990 cgtcgtggacgtgcaggttgtggaggatcacgtt 1023
|||||||||||||||||||||||| |||||||||
Sbjct: 511 cgtcgtggacgtgcaggttgtggatgatcacgtt 478
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 89.7 bits (45), Expect = 5e-016
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcac 1104
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 329 cgatgtgcacctgcgcgccgcgcccgtcgatggtcttgtcgctgctcac 377
Score = 63.9 bits (32), Expect = 3e-008
Identities = 107/132 (81%)
Strand = Plus / Plus
Query: 754 gtcgctggccccgaacagcataacgtggtcgtgcctcgtgaagtggccgttggagacggt 813
||||||||| ||||||||||| |||| || ||| | |||||||||| |||||||| |||
Sbjct: 24 gtcgctggcgccgaacagcatcacgtcgttgtggttggtgaagtggcagttggagatggt 83
Query: 814 gatggcggtggagccgtccaccgcgtccaccagcccgtccgcgcagctgctcatggacag 873
||| | ||||||| | |||| |||| | ||||||||| ||||| || |||||| |
Sbjct: 84 gatccccgtggagctctgcaccacgtcgatgagcccgtcctcgcagttggacatggagat 143
Query: 874 gtggtcgatcca 885
||||||||||||
Sbjct: 144 gtggtcgatcca 155
Score = 60.0 bits (30), Expect = 5e-007
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 990 cgtcgtggacgtgcaggttgtggaggatcacgtt 1023
|||||||||||||||||||||||| |||||||||
Sbjct: 260 cgtcgtggacgtgcaggttgtggatgatcacgtt 293
>gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210473, DNA
sequence
Length = 670
Score = 89.7 bits (45), Expect = 5e-016
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcac 1104
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 145 cgatgtgcacctgcgcgccgcgcccgtcgatggtcttgtcgctgctcac 193
Score = 60.0 bits (30), Expect = 5e-007
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 990 cgtcgtggacgtgcaggttgtggaggatcacgtt 1023
|||||||||||||||||||||||| |||||||||
Sbjct: 76 cgtcgtggacgtgcaggttgtggatgatcacgtt 109
>gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht56g09 5', DNA sequence
Length = 596
Score = 77.8 bits (39), Expect = 2e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 530 agcggttcccctggctgatgatggtcggcgccttgctgccgccgatggcgtacatgagcc 589
Query: 627 agtgcgt 633
|||||||
Sbjct: 590 agtgcgt 596
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 631 cgtgtagtcgttgttcaccacgtggaagaagccgtgacggcagcgcggcatccgctgcac 690
||||||||||||||| || | ||||||| | || | ||||| |||||||||||||||||
Sbjct: 14 cgtgtagtcgttgttgacgatgtggaagtaccctcgccggcatcgcggcatccgctgcac 73
Query: 691 cagccccttgccgaagtggttgaaggcgacggtgacctgcatc 733
|||||| |||||| ||||||| |||| |||||||||||||
Sbjct: 74 cagcccggggccgaaccggttgaacgcgatggtgacctgcatc 116
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 991 gtcgtggacgtgcaggttgtggaggatcacgttgcgcacgttctgcagcgtgat 1044
|||||||||||||| |||||||| |||||||||| ||||| ||||||||||||
Sbjct: 374 gtcgtggacgtgcacgttgtggatgatcacgttggacacgtactgcagcgtgat 427
Score = 50.1 bits (25), Expect = 5e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcac 1104
|||||||||| |||| || ||||||||||||||||||| |||| ||||
Sbjct: 445 cgatgtgcacgcgcgcgccccgcccgtcgatggtcttgtagctgttcac 493
>gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 670
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 991 gtcgtggacgtgcaggttgtggaggatcacgttgcgcacgttctgcagcgtgat 1044
|||||||||||||| |||||||| |||||||||| ||||| ||||||||||||
Sbjct: 486 gtcgtggacgtgcacgttgtggatgatcacgttggacacgtactgcagcgtgat 433
Score = 50.1 bits (25), Expect = 5e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcac 1104
|||||||||| |||| || ||||||||||||||||||| |||| ||||
Sbjct: 415 cgatgtgcacgcgcgcgccccgcccgtcgatggtcttgtagctgttcac 367
>gb|CW346635.1|CW346635 fsbb001f006d20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006d20, DNA
sequence
Length = 738
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 52 aagtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaa 111
|||||||||||||||||| ||| |||| | |||| |||||||||||| ||||| | ||
Sbjct: 567 aagtctgtccacccatgcccggaacttcttgccttttttgtcaccatagcatgaacgcag 626
Query: 112 cgcatcaatggatgcatg 129
|||||||||||||||||
Sbjct: 627 tgcatcaatggatgcatg 644
>gb|CW346636.1|CW346636 fsbb001f006d20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006d20, DNA
sequence
Length = 837
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 52 aagtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaa 111
|||||||||||||||||| ||| |||| | |||| |||||||||||| ||||| | ||
Sbjct: 413 aagtctgtccacccatgcccggaacttcttgccttttttgtcaccatagcatgaacgcag 354
Query: 112 cgcatcaatggatgcatg 129
|||||||||||||||||
Sbjct: 353 tgcatcaatggatgcatg 336
>gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 660
Score = 60.0 bits (30), Expect = 5e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||||||||||||| ||||||| || | ||| ||||| ||||||||||| ||
Sbjct: 315 agcggttgccctggctgttgatggtaggctcagcgctcccgccaatggcgtacatttccc 374
Query: 627 agtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
|||| |||||||| |||||||| || |||||| |||| || |||||
Sbjct: 375 agtgggtgtagtcattgttcacaacatggaagtagccatgccggca 420
>gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 60.0 bits (30), Expect = 5e-007
Identities = 87/106 (82%)
Strand = Plus / Minus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||||||||||||| ||||||| || | ||| ||||| ||||||||||| ||
Sbjct: 205 agcggttgccctggctgttgatggtaggctcagcgctcccgccaatggcgtacatttccc 146
Query: 627 agtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
|||| |||||||| |||||||| || |||||| |||| || |||||
Sbjct: 145 agtgggtgtagtcattgttcacaacatggaagtagccatgccggca 100
>gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 717
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 605 ccgccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccg 664
||||| ||||||||||| |||||| |||||||| |||||||| || |||||| ||||
Sbjct: 658 ccgccaatggcgtacatttcccagtgggtgtagtcattgttcacaacatggaagtagcca 599
Query: 665 tgacggca 672
|| |||||
Sbjct: 598 tgccggca 591
>gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone 10432101, DNA sequence
Length = 617
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1062 gcacctgcgctccgcgcccgtcgatggtcttgtcgc 1097
|||||||||| || || |||||||||||||||||||
Sbjct: 19 gcacctgcgcgccccggccgtcgatggtcttgtcgc 54
>gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 614
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcacgatgagctcct 1115
|||||||||| | || ||||| ||||||||||||||| |||| ||| |||||||||||
Sbjct: 455 cgatgtgcacgttggcgccgcggccgtcgatggtcttgaagctgttcatgatgagctcct 396
>gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 712
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcacgatgagctcct 1115
|||||||||| | || ||||| ||||||||||||||| |||| ||| |||||||||||
Sbjct: 404 cgatgtgcacgttggcgccgcggccgtcgatggtcttgaagctgttcatgatgagctcct 463
>gb|BG411904.1|BG411904 OV2_39_F01.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 381
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 ccacaagtcaaacctccccacccaactatctg 32
|||||||||||| ||| |||||||||||||||
Sbjct: 32 ccacaagtcaaatctcaccacccaactatctg 1
>gb|CW103468.1|CW103468 104_472_11011905_148_34436_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011905, DNA
sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1073 ccgcgcccgtcgatggtcttgt 1094
||||||||||||||||||||||
Sbjct: 164 ccgcgcccgtcgatggtcttgt 143
>gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183195, DNA
sequence
Length = 729
Score = 44.1 bits (22), Expect = 0.028
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 445 gaagaaggcgccgttgaggaacaggtcgtcctgcgacttccacacccagttctt 498
||||| ||| ||||| | |||||||||||||| || | |||||||||||||||
Sbjct: 94 gaagatggctccgttcatgaacaggtcgtcctccgtgtgccacacccagttctt 41
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 419,770
Number of Sequences: 832831
Number of extensions: 419770
Number of successful extensions: 120537
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120399
Number of HSP's gapped (non-prelim): 131
length of query: 1136
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1116
effective length of database: 474,703,049
effective search space: 529768602684
effective search space used: 529768602684
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)