BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440716.2.1
(774 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ348795.1|BZ348795 hp61d04.g2 WGS-SbicolorF (JM107 adap... 70 3e-010
gb|CW032833.1|CW032833 104_262_10501615_115_30362 Sorghum m... 70 3e-010
gb|CW093428.1|CW093428 104_456_10999770_148_37471_071 Sorgh... 70 3e-010
gb|CW176402.1|CW176402 104_589_11158468_148_36680_010 Sorgh... 70 3e-010
gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum m... 68 1e-009
gb|CW263776.1|CW263776 104_732_11230904_148_35236_028 Sorgh... 56 5e-006
gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum m... 52 8e-005
gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorgh... 52 8e-005
gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorgh... 52 8e-005
gb|CW024022.1|CW024022 104_164_10434714_1_30002 Sorghum met... 46 0.005
gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum m... 46 0.005
gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorgh... 46 0.005
gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorgh... 46 0.005
gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorgh... 46 0.005
gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorgh... 46 0.005
gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation... 46 0.005
gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation... 46 0.005
gb|CN141745.1|CN141745 WOUND1_1_C12.g1_A002 Wounded leaves ... 46 0.005
gb|CN144845.1|CN144845 WOUND1_25_G01.b2_A002 Wounded leaves... 46 0.005
gb|CW370930.1|CW370930 fsbb001f046c06k0 Sorghum methylation... 44 0.019
gb|CB928346.1|CB928346 ABA1_15_C06.b1_A012 Abscisic acid-tr... 44 0.019
gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorgh... 42 0.075
gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation... 42 0.075
gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation... 42 0.075
gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation... 42 0.075
gb|CL147748.1|CL147748 104_327_10592607_148_31780_115 Sorgh... 40 0.30
gb|CL154714.1|CL154714 104_340_10781602_116_31470_082 Sorgh... 40 0.30
gb|CL175246.1|CL175246 104_380_10892299_116_31767_283 Sorgh... 40 0.30
gb|CW049015.1|CW049015 104_288_10513772_115_30199 Sorghum m... 40 0.30
gb|CW056988.1|CW056988 104_298_10517976_115_30157 Sorghum m... 40 0.30
gb|CW062728.1|CW062728 104_308_10521501_1_30092 Sorghum met... 40 0.30
gb|CW062729.1|CW062729 104_308_10521501_5_30097 Sorghum met... 40 0.30
gb|CW072473.1|CW072473 104_325_10592285_116_30541 Sorghum m... 40 0.30
gb|CW090792.1|CW090792 104_436_10949475_116_32608_002 Sorgh... 40 0.30
gb|CW095662.1|CW095662 104_460_11001451_116_34326_066 Sorgh... 40 0.30
gb|CW107148.1|CW107148 104_477_11096408_116_34475_028 Sorgh... 40 0.30
gb|CW185050.1|CW185050 104_602_11165857_148_36690_005 Sorgh... 40 0.30
gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorgh... 40 0.30
gb|CW215009.1|CW215009 104_647_11194316_116_37464_078 Sorgh... 40 0.30
gb|CW222298.1|CW222298 104_657_11202302_116_37448_051 Sorgh... 40 0.30
gb|CW222899.1|CW222899 104_658_11202620_116_37184_072 Sorgh... 40 0.30
gb|CW224946.1|CW224946 104_662_11204091_116_37203_010 Sorgh... 40 0.30
gb|CW224947.1|CW224947 104_662_11204091_148_37204_010 Sorgh... 40 0.30
gb|CW269433.1|CW269433 104_740_11401840_148_35315_054 Sorgh... 40 0.30
gb|CW312127.1|CW312127 104_801_11470592_116_36284_018 Sorgh... 40 0.30
gb|CW312128.1|CW312128 104_801_11470592_148_36283_018 Sorgh... 40 0.30
gb|CW389986.1|CW389986 fsbb001f075h01f0 Sorghum methylation... 40 0.30
gb|CW404738.1|CW404738 fsbb001f097a06f0 Sorghum methylation... 40 0.30
gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation... 40 0.30
gb|CW408967.1|CW408967 fsbb001f103b09k0 Sorghum methylation... 40 0.30
gb|CW472599.1|CW472599 fsbb001f227j19k0 Sorghum methylation... 40 0.30
gb|CW483537.1|CW483537 fsbb001f245d19f0 Sorghum methylation... 40 0.30
gb|BE355032.1|BE355032 DG1_10_A04.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE359082.1|BE359082 DG1_38_F04.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1... 40 0.30
gb|CB926451.1|CB926451 ABA1_9_A08.b1_A012 Abscisic acid-tre... 40 0.30
gb|CB927938.1|CB927938 ABA1_35_B08.b1_A012 Abscisic acid-tr... 40 0.30
gb|CB928358.1|CB928358 ABA1_15_H11.b1_A012 Abscisic acid-tr... 40 0.30
gb|CD212039.1|CD212039 HS1_68_G01.b1_A012 Heat-shocked seed... 40 0.30
gb|CD227847.1|CD227847 CCC1_56_A04.b1_A007 Callus culture/c... 40 0.30
gb|CD463502.1|CD463502 ETH1_44_C11.g1_A002 Ethylene-treated... 40 0.30
gb|CN125405.1|CN125405 RHOH1_10_H03.g1_A002 Acid- and alkal... 40 0.30
gb|CN133765.1|CN133765 OX1_18_E06.b1_A002 Oxidatively-stres... 40 0.30
gb|CN144834.1|CN144834 WOUND1_25_E11.b2_A002 Wounded leaves... 40 0.30
>gb|BZ348795.1|BZ348795 hp61d04.g2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp61d04 5', DNA sequence
Length = 346
Score = 69.9 bits (35), Expect = 3e-010
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||||||| |||||| | ||| ||||||||||||||||| || || | |||||
Sbjct: 200 tggagttccaaccgcagtgggtcacgaagccgccgacggccgggtgggccaggatctcct 259
Query: 656 cctgcggcgcccagg 670
||||||||||||||
Sbjct: 260 tctgcggcgcccagg 274
>gb|CW032833.1|CW032833 104_262_10501615_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501615, DNA
sequence
Length = 665
Score = 69.9 bits (35), Expect = 3e-010
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||||||| |||||| | ||| ||||||||||||||||| || || | |||||
Sbjct: 342 tggagttccaaccgcagtgggtcacgaagccgccgacggccgggtgggccaggatctcct 283
Query: 656 cctgcggcgcccagg 670
||||||||||||||
Sbjct: 282 tctgcggcgcccagg 268
>gb|CW093428.1|CW093428 104_456_10999770_148_37471_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999770, DNA
sequence
Length = 641
Score = 69.9 bits (35), Expect = 3e-010
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||||||| |||||| | ||| ||||||||||||||||| || || | |||||
Sbjct: 85 tggagttccaaccgcagtgggtcacgaagccgccgacggccgggtgggccaggatctcct 144
Query: 656 cctgcggcgcccagg 670
||||||||||||||
Sbjct: 145 tctgcggcgcccagg 159
>gb|CW176402.1|CW176402 104_589_11158468_148_36680_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158468, DNA
sequence
Length = 680
Score = 69.9 bits (35), Expect = 3e-010
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||||||| |||||| | ||| ||||||||||||||||| || || | |||||
Sbjct: 17 tggagttccaaccgcagtgggtcacgaagccgccgacggccgggtgggccaggatctcct 76
Query: 656 cctgcggcgcccagg 670
||||||||||||||
Sbjct: 77 tctgcggcgcccagg 91
>gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 556
Score = 67.9 bits (34), Expect = 1e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcc 654
||||||||||| |||||||| || ||| ||||||||||| ||||| ||||||||||
Sbjct: 456 gtggagttccagccgttgtgcgtccagaacccgccgacggcgcggtgccggagcacctcc 397
Query: 655 tcctgcggcgccca 668
||||||||||||||
Sbjct: 396 tcctgcggcgccca 383
>gb|CW263776.1|CW263776 104_732_11230904_148_35236_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230904, DNA
sequence
Length = 637
Score = 56.0 bits (28), Expect = 5e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||| ||| |||||||||||| ||||||||||| | ||| | ||||||||||
Sbjct: 481 tggagttccagccgcagtgggtgaggaagccgccgacggcggcgtgggagagcacctcca 422
Query: 656 cctg 659
||||
Sbjct: 421 cctg 418
>gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515929, DNA
sequence
Length = 565
Score = 52.0 bits (26), Expect = 8e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcc 654
||||||||||| |||||||| || || || ||||| ||||||||||| |||||||||
Sbjct: 441 gtggagttccatccgttgtgagtccaaaatccaccgaccgccgggtgcgccagcacctcc 500
Query: 655 tcctgcggcgccca 668
||||||||||||
Sbjct: 501 agctgcggcgccca 514
>gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 697
Score = 52.0 bits (26), Expect = 8e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcc 654
||||||||||| |||||||| || || || ||||| ||||||||||| |||||||||
Sbjct: 379 gtggagttccatccgttgtgagtccaaaatccaccgaccgccgggtgcgccagcacctcc 438
Query: 655 tcctgcggcgccca 668
||||||||||||
Sbjct: 439 agctgcggcgccca 452
>gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 704
Score = 52.0 bits (26), Expect = 8e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcc 654
||||||||||| |||||||| || || || ||||| ||||||||||| |||||||||
Sbjct: 610 gtggagttccatccgttgtgagtccaaaatccaccgaccgccgggtgcgccagcacctcc 551
Query: 655 tcctgcggcgccca 668
||||||||||||
Sbjct: 550 agctgcggcgccca 537
>gb|CW024022.1|CW024022 104_164_10434714_1_30002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10434714, DNA
sequence
Length = 430
Score = 46.1 bits (23), Expect = 0.005
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||||| | ||| ||||| |||||| ||||| ||||||| ||| |
Sbjct: 235 gagttccacccgcagtgggtcacgaagccgcccacggccccgtgcgagagcaccgccttc 176
Query: 658 tgcggcgccca 668
|||||||||||
Sbjct: 175 tgcggcgccca 165
>gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506614, DNA
sequence
Length = 710
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 626 cgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
|||| ||||| |||||| | || ||||||||||||||||||||
Sbjct: 448 cgcccacggcggggtgctccaggacctcctcctgcggcgccca 490
>gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 646 agcacctcctcctgcggcgccca 668
|||||||||||||||||||||||
Sbjct: 346 agcacctcctcctgcggcgccca 368
>gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 577
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 646 agcacctcctcctgcggcgccca 668
|||||||||||||||||||||||
Sbjct: 391 agcacctcctcctgcggcgccca 369
>gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 707
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 646 agcacctcctcctgcggcgccca 668
|||||||||||||||||||||||
Sbjct: 500 agcacctcctcctgcggcgccca 522
>gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472951, DNA
sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 646 agcacctcctcctgcggcgccca 668
|||||||||||||||||||||||
Sbjct: 601 agcacctcctcctgcggcgccca 623
>gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006d02, DNA
sequence
Length = 704
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 646 agcacctcctcctgcggcgccca 668
|||||||||||||||||||||||
Sbjct: 520 agcacctcctcctgcggcgccca 542
>gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235j04, DNA
sequence
Length = 541
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 646 agcacctcctcctgcggcgccca 668
|||||||||||||||||||||||
Sbjct: 387 agcacctcctcctgcggcgccca 365
>gb|CN141745.1|CN141745 WOUND1_1_C12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_1_C12_A002 5', mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.005
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||||| | ||| ||||| |||||| ||||| ||||||| ||| |
Sbjct: 330 gagttccacccgcagtgggtcacgaagccgcccacggccccgtgcgagagcaccgccttc 389
Query: 658 tgcggcgccca 668
|||||||||||
Sbjct: 390 tgcggcgccca 400
>gb|CN144845.1|CN144845 WOUND1_25_G01.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_G01_A002 3', mRNA sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.005
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||||| | ||| ||||| |||||| ||||| ||||||| ||| |
Sbjct: 102 gagttccacccgcagtgggtcacgaagccgcccacggccccgtgcgagagcaccgccttc 43
Query: 658 tgcggcgccca 668
|||||||||||
Sbjct: 42 tgcggcgccca 32
>gb|CW370930.1|CW370930 fsbb001f046c06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f046c06, DNA
sequence
Length = 534
Score = 44.1 bits (22), Expect = 0.019
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| ||||||| ||||| | ||| |||||||||||| ||||||| ||||
Sbjct: 326 gagttccacccgctgtgggtcaggaagcagcccacggccgggtgccgcagcacctgctcc 267
Query: 658 tg 659
||
Sbjct: 266 tg 265
>gb|CB928346.1|CB928346 ABA1_15_C06.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_C06_A012 3', mRNA sequence
Length = 491
Score = 44.1 bits (22), Expect = 0.019
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| ||||||| ||||| | ||| |||||||||||| ||||||| ||||
Sbjct: 62 gagttccacccgctgtgggtcaggaagcagcccacggccgggtgccgcagcacctgctcc 3
Query: 658 tg 659
||
Sbjct: 2 tg 1
>gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224968, DNA
sequence
Length = 561
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 640 tgcgcgagcacctcctcctgcggcgccca 668
||||||||||| | |||||||||||||||
Sbjct: 187 tgcgcgagcactttctcctgcggcgccca 159
>gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012k24, DNA
sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 640 tgcgcgagcacctcctcctgcggcgccca 668
||||||||||| | |||||||||||||||
Sbjct: 143 tgcgcgagcactttctcctgcggcgccca 115
>gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012m22, DNA
sequence
Length = 637
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 640 tgcgcgagcacctcctcctgcggcgccca 668
||||||||||| | |||||||||||||||
Sbjct: 143 tgcgcgagcactttctcctgcggcgccca 115
>gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f081l05, DNA
sequence
Length = 604
Score = 42.1 bits (21), Expect = 0.075
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 648 cacctcctcctgcggcgccca 668
|||||||||||||||||||||
Sbjct: 486 cacctcctcctgcggcgccca 506
>gb|CL147748.1|CL147748 104_327_10592607_148_31780_115 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592607, DNA
sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.30
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 633 ggccgggtgcgcgagcacctcctcctgcggcgccca 668
|||||||||| ||||||||| |||||||||||||
Sbjct: 593 ggccgggtgccgcagcacctccacctgcggcgccca 558
>gb|CL154714.1|CL154714 104_340_10781602_116_31470_082 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781602, DNA
sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 556 cagcagaccatgggcacgccctcc 579
||||| ||||||||||||||||||
Sbjct: 121 cagcacaccatgggcacgccctcc 98
>gb|CL175246.1|CL175246 104_380_10892299_116_31767_283 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892299, DNA
sequence
Length = 272
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 556 cagcagaccatgggcacgccctcc 579
||||| ||||||||||||||||||
Sbjct: 120 cagcacaccatgggcacgccctcc 97
>gb|CW049015.1|CW049015 104_288_10513772_115_30199 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 379
Score = 40.1 bits (20), Expect = 0.30
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcc 654
||||||||||| |||||||| || ||| ||||||||||| ||||| || |||||||
Sbjct: 316 gtggagttccagccgttgtgcgtccagaacccgccgacggcgcggtgccggaacacctcc 375
Query: 655 tcct 658
||||
Sbjct: 376 tcct 379
>gb|CW056988.1|CW056988 104_298_10517976_115_30157 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517976, DNA
sequence
Length = 559
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 556 cagcagaccatgggcacgccctcc 579
||||| ||||||||||||||||||
Sbjct: 244 cagcacaccatgggcacgccctcc 221
>gb|CW062728.1|CW062728 104_308_10521501_1_30092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521501, DNA
sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 408 gatctcctccccttccttgg 427
||||||||||||||||||||
Sbjct: 347 gatctcctccccttccttgg 328
>gb|CW062729.1|CW062729 104_308_10521501_5_30097 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521501, DNA
sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 408 gatctcctccccttccttgg 427
||||||||||||||||||||
Sbjct: 466 gatctcctccccttccttgg 485
>gb|CW072473.1|CW072473 104_325_10592285_116_30541 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592285, DNA
sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.30
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcac 650
||||||||||| ||| |||||| | ||| | ||| |||||||||||||| |||||
Sbjct: 609 gtggagttccagccgcagtgggtcacgaagcagcccacggccgggtgcgccagcac 664
>gb|CW090792.1|CW090792 104_436_10949475_116_32608_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949475, DNA
sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 645 gagcacctcctcctgcggcgccca 668
|||||||||| |||||||||||||
Sbjct: 264 gagcacctccacctgcggcgccca 287
>gb|CW095662.1|CW095662 104_460_11001451_116_34326_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001451, DNA
sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 556 cagcagaccatgggcacgccctcc 579
||||| ||||||||||||||||||
Sbjct: 5 cagcacaccatgggcacgccctcc 28
>gb|CW107148.1|CW107148 104_477_11096408_116_34475_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096408, DNA
sequence
Length = 314
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 408 gatctcctccccttccttgg 427
||||||||||||||||||||
Sbjct: 201 gatctcctccccttccttgg 220
>gb|CW185050.1|CW185050 104_602_11165857_148_36690_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165857, DNA
sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 340 tcgtcgacgtcgacgccgatgccg 363
||||||||||||| ||||||||||
Sbjct: 174 tcgtcgacgtcgatgccgatgccg 151
>gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183983, DNA
sequence
Length = 699
Score = 40.1 bits (20), Expect = 0.30
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcc 654
||||||||||| ||| |||| |||||||| || | ||||||||||| | |||||| ||
Sbjct: 252 gtggagttccatccgctgtgcgtgaggaacgcggccacggccgggtggtccagcaccgcc 193
Query: 655 tcctgcgg 662
| ||||||
Sbjct: 192 tgctgcgg 185
>gb|CW215009.1|CW215009 104_647_11194316_116_37464_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194316, DNA
sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 340 tcgtcgacgtcgacgccgatgccg 363
||||||||||||| ||||||||||
Sbjct: 325 tcgtcgacgtcgatgccgatgccg 348
>gb|CW222298.1|CW222298 104_657_11202302_116_37448_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202302, DNA
sequence
Length = 418
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 645 gagcacctcctcctgcggcgccca 668
|||||||||| |||||||||||||
Sbjct: 139 gagcacctccacctgcggcgccca 162
>gb|CW222899.1|CW222899 104_658_11202620_116_37184_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202620, DNA
sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 556 cagcagaccatgggcacgccctcc 579
||||| ||||||||||||||||||
Sbjct: 336 cagcacaccatgggcacgccctcc 359
>gb|CW224946.1|CW224946 104_662_11204091_116_37203_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204091, DNA
sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 645 gagcacctcctcctgcggcgccca 668
|||||||||| |||||||||||||
Sbjct: 555 gagcacctccacctgcggcgccca 578
>gb|CW224947.1|CW224947 104_662_11204091_148_37204_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204091, DNA
sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 645 gagcacctcctcctgcggcgccca 668
|||||||||| |||||||||||||
Sbjct: 490 gagcacctccacctgcggcgccca 467
>gb|CW269433.1|CW269433 104_740_11401840_148_35315_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401840, DNA
sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.30
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcac 650
||||||||||| ||| |||||| | ||| | ||| |||||||||||||| |||||
Sbjct: 431 gtggagttccagccgcagtgggtcacgaagcagcccacggccgggtgcgccagcac 376
>gb|CW312127.1|CW312127 104_801_11470592_116_36284_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470592, DNA
sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.30
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcac 650
||||||||||| ||| |||||| | ||| | ||| |||||||||||||| |||||
Sbjct: 501 gtggagttccagccgcagtgggtcacgaagcagcccacggccgggtgcgccagcac 446
>gb|CW312128.1|CW312128 104_801_11470592_148_36283_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470592, DNA
sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.30
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcac 650
||||||||||| ||| |||||| | ||| | ||| |||||||||||||| |||||
Sbjct: 572 gtggagttccagccgcagtgggtcacgaagcagcccacggccgggtgcgccagcac 627
>gb|CW389986.1|CW389986 fsbb001f075h01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f075h01, DNA
sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 408 gatctcctccccttccttgg 427
||||||||||||||||||||
Sbjct: 212 gatctcctccccttccttgg 231
>gb|CW404738.1|CW404738 fsbb001f097a06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097a06, DNA
sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 631 acggccgggtgcgcgagcacctcc 654
|||||||||||||| |||||||||
Sbjct: 489 acggccgggtgcgctagcacctcc 466
>gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097a06, DNA
sequence
Length = 690
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 631 acggccgggtgcgcgagcacctcc 654
|||||||||||||| |||||||||
Sbjct: 424 acggccgggtgcgctagcacctcc 447
>gb|CW408967.1|CW408967 fsbb001f103b09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f103b09, DNA
sequence
Length = 609
Score = 40.1 bits (20), Expect = 0.30
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 595 gtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcac 650
||||||||||| ||| |||||| | ||| | ||| |||||||||||||| |||||
Sbjct: 597 gtggagttccagccgcagtgggtcacgaagcagcccacggccgggtgcgccagcac 542
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 229,106
Number of Sequences: 832831
Number of extensions: 229106
Number of successful extensions: 66381
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66269
Number of HSP's gapped (non-prelim): 109
length of query: 774
length of database: 491,359,669
effective HSP length: 20
effective length of query: 754
effective length of database: 474,703,049
effective search space: 357926098946
effective search space used: 357926098946
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)