BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440419.2.1
(616 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW063191.1|CW063191 104_308_10521767_1_30092 Sorghum met... 737 0.0
gb|CL187506.1|CL187506 104_403_10900934_114_32462_061 Sorgh... 708 0.0
gb|CW460548.1|CW460548 fsbb001f207m18k0 Sorghum methylation... 650 0.0
gb|CX607326.1|CX607326 ANR1_8_A01.b1_A002 Anaerobic roots S... 601 e-170
gb|CW232856.1|CW232856 104_685_11213043_148_37487_004 Sorgh... 585 e-165
gb|CW063192.1|CW063192 104_308_10521767_5_30097 Sorghum met... 281 4e-074
gb|CW391540.1|CW391540 fsbb001f077l15f0 Sorghum methylation... 163 2e-038
gb|CW124814.1|CW124814 104_504_11111989_148_34703_051 Sorgh... 86 4e-015
gb|CW403686.1|CW403686 fsbb001f095i11f0 Sorghum methylation... 86 4e-015
gb|CW403687.1|CW403687 fsbb001f095i11k0 Sorghum methylation... 86 4e-015
gb|CD427782.1|CD427782 ETH1_34_A07.b1_A002 Ethylene-treated... 86 4e-015
gb|CL194588.1|CL194588 104_419_10941741_114_32294_093 Sorgh... 62 6e-008
gb|CW044142.1|CW044142 104_280_10508785_114_30262 Sorghum m... 62 6e-008
gb|CW253365.1|CW253365 104_717_11225045_148_35106_031 Sorgh... 62 6e-008
gb|CW340016.1|CW340016 104_840_11485579_148_36143_066 Sorgh... 62 6e-008
gb|CW464493.1|CW464493 fsbb001f213m05k0 Sorghum methylation... 62 6e-008
gb|CF427061.1|CF427061 PH1_3_H06.b1_A002 Phosphorous-defici... 62 6e-008
gb|CX606134.1|CX606134 ANR1_1_G08.b1_A002 Anaerobic roots S... 62 6e-008
gb|CX607023.1|CX607023 ANR1_6_F05.b1_A002 Anaerobic roots S... 62 6e-008
gb|CX608555.1|CX608555 ANR1_39_G03.b1_A002 Anaerobic roots ... 62 6e-008
gb|CX611336.1|CX611336 ANR1_24_C05.b1_A002 Anaerobic roots ... 62 6e-008
gb|CX611873.1|CX611873 ANR1_27_E10.b1_A002 Anaerobic roots ... 62 6e-008
gb|CX617875.1|CX617875 GABR1_36_G09.b1_A002 GA- or brassino... 62 6e-008
gb|CX619183.1|CX619183 GABR1_44_A10.b1_A002 GA- or brassino... 62 6e-008
gb|CX621095.1|CX621095 GABR1_56_A09.b1_A002 GA- or brassino... 62 6e-008
gb|CW339413.1|CW339413 104_840_11485261_116_36138_061 Sorgh... 58 1e-006
gb|CW339414.1|CW339414 104_840_11485261_148_36139_061 Sorgh... 58 1e-006
gb|AW671797.1|AW671797 LG1_351_B05.g1_A002 Light Grown 1 (L... 58 1e-006
gb|CD231406.1|CD231406 SS1_16_D04.b1_A012 Salt-stressed see... 58 1e-006
gb|CX612734.1|CX612734 GABR1_4_D12.b1_A002 GA- or brassinol... 58 1e-006
gb|CX620500.1|CX620500 GABR1_52_F03.b1_A002 GA- or brassino... 58 1e-006
gb|CW501750.1|CW501750 fsbb001f297l21f0 Sorghum methylation... 50 2e-004
gb|CW148317.1|CW148317 104_542_11140356_148_35007_034 Sorgh... 40 0.23
gb|CW229880.1|CW229880 104_671_11207551_148_37265_026 Sorgh... 40 0.23
gb|CW246410.1|CW246410 104_707_11221331_116_35084_044 Sorgh... 40 0.23
gb|CW246411.1|CW246411 104_707_11221331_148_35088_044 Sorgh... 40 0.23
gb|CW246412.1|CW246412 104_707_11221331_148_37606_044 Sorgh... 40 0.23
gb|CW274119.1|CW274119 104_746_11404259_116_35364_034 Sorgh... 40 0.23
gb|CW340015.1|CW340015 104_840_11485579_116_36142_066 Sorgh... 40 0.23
gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation... 40 0.23
gb|CW467144.1|CW467144 fsbb001f218l09f0 Sorghum methylation... 40 0.23
gb|CF431128.1|CF431128 NIT1_6_G10.b1_A002 Nitrogen-deficien... 40 0.23
gb|CX608565.1|CX608565 ANR1_39_H01.b1_A002 Anaerobic roots ... 40 0.23
gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots ... 40 0.23
gb|CX615412.1|CX615412 GABR1_20_B03.b1_A002 GA- or brassino... 40 0.23
gb|CX615427.1|CX615427 GABR1_20_C07.b1_A002 GA- or brassino... 40 0.23
>gb|CW063191.1|CW063191 104_308_10521767_1_30092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521767, DNA
sequence
Length = 570
Score = 737 bits (372), Expect = 0.0
Identities = 470/502 (93%), Gaps = 1/502 (0%)
Strand = Plus / Minus
Query: 115 ccggccatgagcgcggtggccgnggcgccacaggatacagcctcgttgggcaccttggcg 174
||||||||||| |||||||||| |||||| ||||| || |||| ||||||||||||| ||
Sbjct: 570 ccggccatgagtgcggtggccgtggcgccgcaggacacggccttgttgggcaccttgccg 511
Query: 175 acgaggtcgacagcctcagcgaagatgacgcccatgcccatgtggaggtgcggctcgata 234
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 acgaggtccaccgcctcggcgaagatgacgcccatgcccatgtggaggtgcggctcgatg 451
Query: 235 tggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgtccacccg 294
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tggcagtggaacgcccacacccccgggttgtccgccacgaaccggagcatcgtccacccg 391
Query: 295 tacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggttgagccgcgcttcg 354
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 390 tacgggaagatcaccgccgtgttccgcagcggcgggtccctgaggttgagccgcgcctcg 331
Query: 355 tcggcggcgtccccgcggtacgcgccgtcgccgtagcccagcacccagaagtcgtggccg 414
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcggcggcgtcgccgcggtacgcgccgtcgccgtagcccagcacccagaagtcgtggccg 271
Query: 415 tggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgcgttggcgttctggagc 474
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 270 tggaggtgccacgggtgcacctcgctgacgttccgcgacagcgcgttggcgttctggagc 211
Query: 475 agcacgtcgacggtggtgttgtgcgccaggacgtacacgttgtcccccgccgtcgtgttg 534
| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 210 accacgtccacggtggtgttgtgcgccagcacgtacacgttgtccccgaccgtcgtgttc 151
Query: 535 gggttcggcggcggcagcgtcacgtcgtattcccggctgaacgtctccgcggngcgcgcc 594
|||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||||
Sbjct: 150 gggttcggcggcggcagcttcacgtcgtagccccggctgaacgtctccgccgggcgcgcc 91
Query: 595 gcccgccagcgtcgacttgagc 616
| |||||||||| |||||||||
Sbjct: 90 g-ccgccagcgtggacttgagc 70
>gb|CL187506.1|CL187506 104_403_10900934_114_32462_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900934, DNA
sequence
Length = 473
Score = 708 bits (357), Expect = 0.0
Identities = 437/464 (94%)
Strand = Plus / Plus
Query: 85 ccaatatttgatggcaatcacaggtgaccgccggccatgagcgcggtggccgnggcgcca 144
|||| ||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||
Sbjct: 10 ccaacatttgatggcaatcacacgtggccgccggccatgagtgcggtggccgtggcgccg 69
Query: 145 caggatacagcctcgttgggcaccttggcgacgaggtcgacagcctcagcgaagatgacg 204
||||| || |||||||||||||||||| |||||||||| || ||||| ||||||||||||
Sbjct: 70 caggacacggcctcgttgggcaccttgccgacgaggtccaccgcctcggcgaagatgacg 129
Query: 205 cccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgggttg 264
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 130 cccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacacccccgggttg 189
Query: 265 tccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccgtgttccgcagc 324
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 190 tccgccacgaaccggagcatcgtccacccgtacgggaagatcaccgccgtgttccgcagc 249
Query: 325 ggcgggtcccggaggttgagccgcgcttcgtcggcggcgtccccgcggtacgcgccgtcg 384
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 250 ggcgggtccctgaggttgagccgcgcctcgtcggcggcgtcgccgcggtacgcgccgtcg 309
Query: 385 ccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacg 369
Query: 445 ttgcgcgacagcgcgttggcgttctggagcagcacgtcgacggtggtgttgtgcgccagg 504
|| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 370 ttccgcgacagcgcgttggcgttctggagcaccacgtccacggtggtgttgtgcgccagc 429
Query: 505 acgtacacgttgtcccccgccgtcgtgttggggttcggcggcgg 548
||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 430 acgtacacgttgtccccgaccgtcgtgttcgggttcggcggcgg 473
>gb|CW460548.1|CW460548 fsbb001f207m18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207m18, DNA
sequence
Length = 488
Score = 650 bits (328), Expect = 0.0
Identities = 396/419 (94%)
Strand = Plus / Plus
Query: 85 ccaatatttgatggcaatcacaggtgaccgccggccatgagcgcggtggccgnggcgcca 144
|||| ||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||
Sbjct: 66 ccaacatttgatggcaatcacacgtggccgccggccatgagtgcggtggccgtggcgccg 125
Query: 145 caggatacagcctcgttgggcaccttggcgacgaggtcgacagcctcagcgaagatgacg 204
||||| || |||||||||||||||||| |||||||||| || ||||| ||||||||||||
Sbjct: 126 caggacacggcctcgttgggcaccttgccgacgaggtccaccgcctcggcgaagatgacg 185
Query: 205 cccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgggttg 264
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 186 cccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacacccccgggttg 245
Query: 265 tccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccgtgttccgcagc 324
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 246 tccgccacgaaccggagcatcgtccacccgtacgggaagatcaccgccgtgttccgcagc 305
Query: 325 ggcgggtcccggaggttgagccgcgcttcgtcggcggcgtccccgcggtacgcgccgtcg 384
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 306 ggcgggtccctgaggttgagccgcgcctcgtcggcggcgtcgccgcggtacgcgccgtcg 365
Query: 385 ccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacg 425
Query: 445 ttgcgcgacagcgcgttggcgttctggagcagcacgtcgacggtggtgttgtgcgccag 503
|| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 426 ttccgcgacagcgcgttggcgttctggagcaccacgtccacggtggtgttgtgcgccag 484
>gb|CX607326.1|CX607326 ANR1_8_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_8_A01_A002 3', mRNA sequence
Length = 609
Score = 601 bits (303), Expect = e-170
Identities = 368/390 (94%)
Strand = Plus / Minus
Query: 85 ccaatatttgatggcaatcacaggtgaccgccggccatgagcgcggtggccgnggcgcca 144
|||| ||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||
Sbjct: 390 ccaacatttgatggcaatcacacgtggccgccggccatgagtgcggtggccgtggcgccg 331
Query: 145 caggatacagcctcgttgggcaccttggcgacgaggtcgacagcctcagcgaagatgacg 204
||||| || |||||||||||||||||| |||||||||| || ||||| ||||||||||||
Sbjct: 330 caggacacggcctcgttgggcaccttgccgacgaggtccaccgcctcggcgaagatgacg 271
Query: 205 cccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgggttg 264
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 270 cccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacacccccgggttg 211
Query: 265 tccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccgtgttccgcagc 324
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 210 tccgccacgaaccggagcatcgtccacccgtacgggaagatcaccgccgtgttccgcagc 151
Query: 325 ggcgggtcccggaggttgagccgcgcttcgtcggcggcgtccccgcggtacgcgccgtcg 384
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 150 ggcgggtccctgaggttgagccgcgcctcgtcggcggcgtcgccgcggtacgcgccgtcg 91
Query: 385 ccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacg 31
Query: 445 ttgcgcgacagcgcgttggcgttctggagc 474
|| ||||||| |||||||||||||||||||
Sbjct: 30 ttccgcgacaacgcgttggcgttctggagc 1
>gb|CW232856.1|CW232856 104_685_11213043_148_37487_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213043, DNA
sequence
Length = 514
Score = 585 bits (295), Expect = e-165
Identities = 366/390 (93%)
Strand = Plus / Plus
Query: 85 ccaatatttgatggcaatcacaggtgaccgccggccatgagcgcggtggccgnggcgcca 144
|||| ||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||
Sbjct: 125 ccaacatttgatggcaatcacacgtggccgccggccatgagtgcggtggccgtggcgccg 184
Query: 145 caggatacagcctcgttgggcaccttggcgacgaggtcgacagcctcagcgaagatgacg 204
||||| || |||||||||||||||||| |||||||||| || ||||| ||||||||||||
Sbjct: 185 caggacacggcctcgttgggcaccttgccgacgaggtccaccgcctcggcgaagatgacg 244
Query: 205 cccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgggttg 264
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 245 cccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacacccccgggttg 304
Query: 265 tccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccgtgttccgcagc 324
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 305 tccgccacgaaccggagcatcgtccacccgtacgggaagatcaccgccgtgttccgcagc 364
Query: 325 ggcgggtcccggaggttgagccgcgcttcgtcggcggcgtccccgcggtacgcgccgtcg 384
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 365 ggcgggtccctgaggttgagccgcgcctcgtcggcggcgtcgccgcggtacgcgccgtcg 424
Query: 385 ccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacg 444
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 425 ccgtagcccagcacccagaagtcgtggccgtggaggtgccacgtgtgcacctcgctgacg 484
Query: 445 ttgcgcgacagcgcgttggcgttctggagc 474
|| |||||||||||| |||||||||||||
Sbjct: 485 ttccgcgacagcgcgcaggcgttctggagc 514
>gb|CW063192.1|CW063192 104_308_10521767_5_30097 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521767, DNA
sequence
Length = 554
Score = 281 bits (142), Expect = 4e-074
Identities = 186/201 (92%)
Strand = Plus / Plus
Query: 85 ccaatatttgatggcaatcacaggtgaccgccggccatgagcgcggtggccgnggcgcca 144
|||| ||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||
Sbjct: 354 ccaacatttgatggcaatcacacgtggccgccggccatgagtgcggtggccgtggcgccg 413
Query: 145 caggatacagcctcgttgggcaccttggcgacgaggtcgacagcctcagcgaagatgacg 204
||||| || |||||||||||||||||| |||||||||| || ||||| ||||||||||||
Sbjct: 414 caggacacggcctcgttgggcaccttgccgacgaggtccaccgcctcggcgaagatgacg 473
Query: 205 cccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgggttg 264
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 474 cccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacacccccgggttg 533
Query: 265 tccgccacgaaccggagcatc 285
|||||||||||||||||||||
Sbjct: 534 tccgccacgaaccggagcatc 554
>gb|CW391540.1|CW391540 fsbb001f077l15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077l15, DNA
sequence
Length = 467
Score = 163 bits (82), Expect = 2e-038
Identities = 124/138 (89%)
Strand = Plus / Plus
Query: 193 gcgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccac 252
||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 115 gcgaagatgacccccatgcccaaatggaggtgcggctcgatgtggcagtggaacgcccac 174
Query: 253 acgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgcc 312
|| |||||||||||||||||||||||||||| |||||| |||| ||| || | ||| ||
Sbjct: 175 acccccgggttgtccgccacgaaccggagcaccgtccagccgtgcgggaacagcaccacc 234
Query: 313 gtgttccgcagcggcggg 330
||||||||||||||||||
Sbjct: 235 gtgttccgcagcggcggg 252
Score = 83.8 bits (42), Expect = 2e-014
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 377 cgccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacct 436
|||| ||||||||||| |||||||||||||| |||||||| || |||||||||||| ||
Sbjct: 296 cgccatcgccgtagccgagcacccagaagtcatggccgtgcagatgccacgggtgcgact 355
Query: 437 cgctgacgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
||||||||| | ||||||| | |||||||| |||| ||||||||||
Sbjct: 356 cgctgacgtcttcctccagcgcgctcgcgttctgcagcaccacgtcgacg 405
>gb|CW124814.1|CW124814 104_504_11111989_148_34703_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111989, DNA
sequence
Length = 493
Score = 85.7 bits (43), Expect = 4e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 69 gccgtcgccgtaggcgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 15
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 205 cccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgggttg 264
||||||||||||| | ||||| |||||| || |||||||| |||||| || ||||||
Sbjct: 239 cccatgcccatgtacacgtgcgcctcgatgtgacagtggaacagccacaccccggggttg 180
Query: 265 tccgccacgaacc 277
|||||||||||||
Sbjct: 179 tccgccacgaacc 167
>gb|CW403686.1|CW403686 fsbb001f095i11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i11, DNA
sequence
Length = 635
Score = 85.7 bits (43), Expect = 4e-015
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 418 gccgtcgccgtaggcgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 472
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 205 cccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgggttg 264
||||||||||||| | ||||| |||||| || |||||||| |||||| || ||||||
Sbjct: 248 cccatgcccatgtacacgtgcgcctcgatgtgacagtggaacagccacaccccggggttg 307
Query: 265 tccgccacgaacc 277
|||||||||||||
Sbjct: 308 tccgccacgaacc 320
>gb|CW403687.1|CW403687 fsbb001f095i11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i11, DNA
sequence
Length = 571
Score = 85.7 bits (43), Expect = 4e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 gccgtcgccgtaggcgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 397
>gb|CD427782.1|CD427782 ETH1_34_A07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_A07_A002 3', mRNA sequence
Length = 665
Score = 85.7 bits (43), Expect = 4e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 199 gccgtcgccgtaggcgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 145
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 205 cccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgggttg 264
||||||||||||| | ||||| |||||| || |||||||| |||||| || ||||||
Sbjct: 369 cccatgcccatgtacacgtgcgcctcgatgtgacagtggaacagccacaccccggggttg 310
Query: 265 tccgccacgaacc 277
|||||||||||||
Sbjct: 309 tccgccacgaacc 297
>gb|CL194588.1|CL194588 104_419_10941741_114_32294_093 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941741, DNA
sequence
Length = 629
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 179 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 238
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 239 gccgccagcatgttggcgttctgcagcacgacgtcgacg 277
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 22 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 81
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 82 ccacccatacgga 94
>gb|CW044142.1|CW044142 104_280_10508785_114_30262 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508785, DNA
sequence
Length = 643
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 344 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 403
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 404 gccgccagcatgttggcgttctgcagcacgacgtcgacg 442
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 187 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 246
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 247 ccacccatacgga 259
>gb|CW253365.1|CW253365 104_717_11225045_148_35106_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225045, DNA
sequence
Length = 719
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 506 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 565
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 566 gccgccagcatgttggcgttctgcagcacgacgtcgacg 604
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 349 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 408
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 409 ccacccatacgga 421
>gb|CW340016.1|CW340016 104_840_11485579_148_36143_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485579, DNA
sequence
Length = 722
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||||||||||||||| || || ||||| |||||||| |||||| |||||| ||||
Sbjct: 191 tagcccagcacccagaaatcatgcccgtgcaggtgccaagggtgcgtctcgctcttgttg 250
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| ||||||||||
Sbjct: 251 gccgccagcatgttggcgttctgcagcaccacgtcgacg 289
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 34 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 93
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 94 ccacccatacgga 106
>gb|CW464493.1|CW464493 fsbb001f213m05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213m05, DNA
sequence
Length = 688
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 508 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 567
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 568 gccgccagcatgttggcgttctgcagcacgacgtcgacg 606
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 351 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 410
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 411 ccacccatacgga 423
>gb|CF427061.1|CF427061 PH1_3_H06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_3_H06_A002 3', mRNA sequence
Length = 576
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 158 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 99
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 98 gccgccagcatgttggcgttctgcagcacgacgtcgacg 60
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 315 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 256
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 255 ccacccatacgga 243
>gb|CX606134.1|CX606134 ANR1_1_G08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_G08_A002 3', mRNA sequence
Length = 750
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 331 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 272
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 271 gccgccagcatgttggcgttctgcagcacgacgtcgacg 233
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 488 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 429
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 428 ccacccatacgga 416
>gb|CX607023.1|CX607023 ANR1_6_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_F05_A002 3', mRNA sequence
Length = 723
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 270 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 211
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 210 gccgccagcatgttggcgttctgcagcacgacgtcgacg 172
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 427 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 368
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 367 ccacccatacgga 355
>gb|CX608555.1|CX608555 ANR1_39_G03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_G03_A002 3', mRNA sequence
Length = 630
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 206 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 147
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 146 gccgccagcatgttggcgttctgcagcacgacgtcgacg 108
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 363 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 304
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 303 ccacccatacgga 291
>gb|CX611336.1|CX611336 ANR1_24_C05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_C05_A002 3', mRNA sequence
Length = 777
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 371 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 312
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 311 gccgccagcatgttggcgttctgcagcacgacgtcgacg 273
>gb|CX611873.1|CX611873 ANR1_27_E10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_E10_A002 3', mRNA sequence
Length = 769
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 350 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 291
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 290 gccgccagcatgttggcgttctgcagcacgacgtcgacg 252
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 507 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 448
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 447 ccacccatacgga 435
>gb|CX617875.1|CX617875 GABR1_36_G09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_36_G09_A002 3', mRNA sequence
Length = 703
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 267 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 208
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 207 gccgccagcatgttggcgttctgcagcacgacgtcgacg 169
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 424 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 365
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 364 ccacccatacgga 352
>gb|CX619183.1|CX619183 GABR1_44_A10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_44_A10_A002 3', mRNA sequence
Length = 627
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 191 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 132
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 131 gccgccagcatgttggcgttctgcagcacgacgtcgacg 93
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 348 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 289
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 288 ccacccatacgga 276
>gb|CX621095.1|CX621095 GABR1_56_A09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_56_A09_A002 3', mRNA sequence
Length = 672
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct: 265 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgcgtctcgctcttgttg 206
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 205 gccgccagcatgttggcgttctgcagcacgacgtcgacg 167
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 422 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 363
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 362 ccacccatacgga 350
>gb|CW339413.1|CW339413 104_840_11485261_116_36138_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485261, DNA
sequence
Length = 245
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 189 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 130
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 129 ccacccatacgga 117
>gb|CW339414.1|CW339414 104_840_11485261_148_36139_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485261, DNA
sequence
Length = 245
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 55 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 114
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 115 ccacccatacgga 127
>gb|AW671797.1|AW671797 LG1_351_B05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 253 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 194
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 193 ccacccatacgga 181
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct: 96 tagccgagcacccagaagtcatgcccgtgcaggtgccacgggtgc 52
>gb|CD231406.1|CD231406 SS1_16_D04.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_16_D04_A012 3', mRNA sequence
Length = 589
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 287 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 228
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 227 ccacccatacgga 215
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct: 130 tagccgagcacccagaagtcatgtccgtgcaggtgccacgggtgc 86
>gb|CX612734.1|CX612734 GABR1_4_D12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_D12_A002 3', mRNA sequence
Length = 707
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 424 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 365
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 364 ccacccatacgga 352
Score = 54.0 bits (27), Expect = 2e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttg 447
||||| |||||||||||||| || ||||| ||| ||||||||||| |||||| ||||
Sbjct: 267 tagccgagcacccagaagtcatgcccgtgcaggcgccacgggtgcgtctcgctcttgttg 208
Query: 448 cgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|| |||| |||||||||||| |||| |||||||||
Sbjct: 207 gccgccagcatgttggcgttctgcagcacgacgtcgacg 169
>gb|CX620500.1|CX620500 GABR1_52_F03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_52_F03_A002 3', mRNA sequence
Length = 389
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 228 ctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgt 287
|||||| ||||| ||||| ||||||||||| |||||||| ||| |||||| ||| |||
Sbjct: 140 ctcgatgtggcaatggaacgcccacacgccggggttgtcagccttgaaccgcagcgccgt 81
Query: 288 ccacccgtacgga 300
|||||| ||||||
Sbjct: 80 ccacccatacgga 68
>gb|CW501750.1|CW501750 fsbb001f297l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297l21, DNA
sequence
Length = 479
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 388 tagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||| |||||||||||||| || || || |||||||||||||||
Sbjct: 389 tagccgagcacccagaagtcatgcccatgcaggtgccacgggtgc 433
>gb|CW148317.1|CW148317 104_542_11140356_148_35007_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140356, DNA
sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 331 ccacacccccggattatccgccacgaaccgga 362
>gb|CW229880.1|CW229880 104_671_11207551_148_37265_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207551, DNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 267 ccacacccccggattatccgccacgaaccgga 298
>gb|CW246410.1|CW246410 104_707_11221331_116_35084_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 269 ccacacccccggattatccgccacgaaccgga 300
>gb|CW246411.1|CW246411 104_707_11221331_148_35088_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 645 ccacacccccggattatccgccacgaaccgga 614
>gb|CW246412.1|CW246412 104_707_11221331_148_37606_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 645 ccacacccccggattatccgccacgaaccgga 614
>gb|CW274119.1|CW274119 104_746_11404259_116_35364_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404259, DNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 392 ccagcacccagaagtcgtggccgtggaggtgc 423
||||||| |||||||||| ||||||||||||
Sbjct: 369 ccagcacgaagaagtcgtgcccgtggaggtgc 400
>gb|CW340015.1|CW340015 104_840_11485579_116_36142_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485579, DNA
sequence
Length = 732
Score = 40.1 bits (20), Expect = 0.23
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 459 gttggcgttctggagcagcacgtcgacg 486
|||||||||||| |||| ||||||||||
Sbjct: 655 gttggcgttctgcagcaccacgtcgacg 628
>gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033k13, DNA
sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.23
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 397 acccagaagtcgtggccgtggaggtgccacgggtgcacctcgct 440
||||||||||||| |||| ||||||||||| |||| ||||||
Sbjct: 28 acccagaagtcgtatccgtcgaggtgccacgcctgcagctcgct 71
>gb|CW467144.1|CW467144 fsbb001f218l09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218l09, DNA
sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 521 ccacacccccggattatccgccacgaaccgga 552
>gb|CF431128.1|CF431128 NIT1_6_G10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_6_G10_A002 3', mRNA sequence
Length = 512
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 168 ccacacccccggattatccgccacgaaccgga 137
>gb|CX608565.1|CX608565 ANR1_39_H01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_H01_A002 3', mRNA sequence
Length = 448
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 183 ccacacccccggattatccgccacgaaccgga 152
>gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_G11_A002 3', mRNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.23
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 397 acccagaagtcgtggccgtggaggtgccacgggtgcacctcgct 440
||||||||||||| |||| ||||||||||| |||| ||||||
Sbjct: 133 acccagaagtcgtatccgtcgaggtgccacgcctgcagctcgct 90
>gb|CX615412.1|CX615412 GABR1_20_B03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_B03_A002 3', mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 333 ccacacccccggattatccgccacgaaccgga 302
>gb|CX615427.1|CX615427 GABR1_20_C07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_C07_A002 3', mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccgga 280
|||||| ||||| || ||||||||||||||||
Sbjct: 294 ccacacccccggattatccgccacgaaccgga 263
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 201,434
Number of Sequences: 832831
Number of extensions: 201434
Number of successful extensions: 59197
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59107
Number of HSP's gapped (non-prelim): 75
length of query: 616
length of database: 491,359,669
effective HSP length: 19
effective length of query: 597
effective length of database: 475,535,880
effective search space: 283894920360
effective search space used: 283894920360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)