BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW746257.1|AW746257 WS1_40_H02.b1_A002 Water-stressed 1 ... 466 e-129
gb|CX608159.1|CX608159 ANR1_37_B07.b1_A002 Anaerobic roots ... 466 e-129
gb|CX608247.1|CX608247 ANR1_37_B07.g1_A002 Anaerobic roots ... 466 e-129
gb|AW924253.1|AW924253 WS1_51_B07.b1_A002 Water-stressed 1 ... 464 e-129
gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 ... 458 e-127
gb|BI140000.1|BI140000 IP1_48_F03.b1_A002 Immature pannicle... 440 e-122
gb|BI139744.1|BI139744 IP1_48_F03.g1_A002 Immature pannicle... 420 e-116
gb|CF071236.1|CF071236 FE1_16_E07.b1_A002 Iron-deficient se... 371 e-101
gb|BE917644.1|BE917644 OV1_6_C09.g1_A002 Ovary 1 (OV1) Sorg... 168 4e-040
gb|BE917721.1|BE917721 OV1_6_C09.b1_A002 Ovary 1 (OV1) Sorg... 168 4e-040
gb|CF480318.1|CF480318 POL1_65_B09.b1_A002 Pollen Sorghum b... 168 4e-040
gb|CF480395.1|CF480395 POL1_65_B09.g1_A002 Pollen Sorghum b... 168 4e-040
gb|CF488916.1|CF488916 POL1_53_B08.b1_A002 Pollen Sorghum b... 168 4e-040
gb|BZ349519.1|BZ349519 hr41f08.g1 WGS-SbicolorF (JM107 adap... 123 2e-026
gb|CW058903.1|CW058903 104_301_10519003_114_30158 Sorghum m... 123 2e-026
gb|CW327725.1|CW327725 104_823_11478908_116_35982_072 Sorgh... 123 2e-026
gb|CW327726.1|CW327726 104_823_11478908_148_35981_072 Sorgh... 123 2e-026
gb|CW386919.1|CW386919 fsbb001f071a21f0 Sorghum methylation... 103 2e-020
gb|CW489220.1|CW489220 fsbb001f274a14f0 Sorghum methylation... 103 2e-020
gb|CW489546.1|CW489546 fsbb001f274i17f0 Sorghum methylation... 103 2e-020
gb|CW132443.1|CW132443 104_515_11116214_116_34799_051 Sorgh... 94 2e-017
gb|CL163922.1|CL163922 104_357_10807515_114_31812_267 Sorgh... 88 1e-015
gb|CW035318.1|CW035318 104_265_10503085_115_30379 Sorghum m... 88 1e-015
gb|CW481098.1|CW481098 fsbb001f240h20f0 Sorghum methylation... 88 1e-015
gb|CW492839.1|CW492839 fsbb001f283f11k0 Sorghum methylation... 88 1e-015
gb|CW147524.1|CW147524 104_540_11139553_148_34992_001 Sorgh... 48 0.001
gb|CW153361.1|CW153361 104_555_11145007_116_36343_032 Sorgh... 48 0.001
gb|CW159138.1|CW159138 104_565_11149202_116_36406_011 Sorgh... 48 0.001
gb|CW217127.1|CW217127 104_650_11195490_148_37131_075 Sorgh... 48 0.001
gb|CW405227.1|CW405227 fsbb001f097l05k0 Sorghum methylation... 48 0.001
gb|CD213967.1|CD213967 HS1_69_D10.g1_A012 Heat-shocked seed... 48 0.001
gb|CD235328.1|CD235328 SS1_28_G08.g1_A012 Salt-stressed see... 48 0.001
gb|CF428977.1|CF428977 PH1_18_G05.g1_A002 Phosphorous-defic... 48 0.001
gb|CN140208.1|CN140208 OX1_34_F04.g1_A002 Oxidatively-stres... 48 0.001
gb|CW135874.1|CW135874 104_520_11118077_148_34834_021 Sorgh... 42 0.059
gb|CD205983.1|CD205983 HS1_19_D08.g1_A012 Heat-shocked seed... 42 0.059
gb|CD211677.1|CD211677 HS1_63_E02.g1_A012 Heat-shocked seed... 42 0.059
gb|CD231139.1|CD231139 SS1_8_C02.g1_A012 Salt-stressed seed... 42 0.059
gb|CD233257.1|CD233257 SS1_12_H01.g1_A012 Salt-stressed see... 42 0.059
gb|CD234277.1|CD234277 SS1_26_B03.g1_A012 Salt-stressed see... 42 0.059
gb|CD235179.1|CD235179 SS1_21_D05.g1_A012 Salt-stressed see... 42 0.059
gb|CD235725.1|CD235725 SS1_37_G01.g1_A012 Salt-stressed see... 42 0.059
gb|CD235877.1|CD235877 SS1_24_D05.g1_A012 Salt-stressed see... 42 0.059
gb|CD235941.1|CD235941 SS1_24_A07.g1_A012 Salt-stressed see... 42 0.059
gb|CL162156.1|CL162156 104_354_10806212_114_31830_116 Sorgh... 40 0.23
gb|CW056637.1|CW056637 104_298_10517789_114_30151 Sorghum m... 40 0.23
gb|CW065116.1|CW065116 104_311_10522957_115_30121 Sorghum m... 40 0.23
gb|CW067431.1|CW067431 104_315_10524273_114_30124 Sorghum m... 40 0.23
gb|CW105862.1|CW105862 104_475_11013106_116_34457_043 Sorgh... 40 0.23
gb|CW210265.1|CW210265 104_640_11189703_116_36997_054 Sorgh... 40 0.23
gb|CW313688.1|CW313688 104_804_11471419_148_35798_080 Sorgh... 40 0.23
gb|CW316910.1|CW316910 104_808_11473138_148_35858_039 Sorgh... 40 0.23
gb|CW317248.1|CW317248 104_809_11473315_116_35859_080 Sorgh... 40 0.23
gb|CW317249.1|CW317249 104_809_11473315_148_35863_080 Sorgh... 40 0.23
gb|CW341707.1|CW341707 104_843_11486477_148_36162_027 Sorgh... 40 0.23
gb|CW369262.1|CW369262 fsbb001f043j13k0 Sorghum methylation... 40 0.23
gb|CW415780.1|CW415780 fsbb001f116a14f0 Sorghum methylation... 40 0.23
gb|CW420037.1|CW420037 fsbb001f126c17f0 Sorghum methylation... 40 0.23
gb|CW431200.1|CW431200 fsbb001f145e16k0 Sorghum methylation... 40 0.23
gb|CW450444.1|CW450444 fsbb001f189b09k0 Sorghum methylation... 40 0.23
gb|CW485270.1|CW485270 fsbb001f247o11f0 Sorghum methylation... 40 0.23
gb|CW494779.1|CW494779 fsbb001f286d21f0 Sorghum methylation... 40 0.23
gb|CW494780.1|CW494780 fsbb001f286d21k0 Sorghum methylation... 40 0.23
gb|AW679698.1|AW679698 WS1_30_F01.g1_A002 Water-stressed 1 ... 40 0.23
gb|AW745500.1|AW745500 WS1_35_B03.b1_A002 Water-stressed 1 ... 40 0.23
gb|BG047879.1|BG047879 OV1_28_H06.b1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|BG048197.1|BG048197 OV1_28_H06.g1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|BG049322.1|BG049322 OV1_18_E03.g1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|BG240148.1|BG240148 OV1_18_E03.b1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|BG240209.1|BG240209 OV1_19_C01.b1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|CD222422.1|CD222422 CCC1_21_A12.g1_A007 Callus culture/c... 40 0.23
gb|CD222591.1|CD222591 CCC1_22_C03.g1_A007 Callus culture/c... 40 0.23
gb|CD432410.1|CD432410 ETH1_29_H10.g1_A002 Ethylene-treated... 40 0.23
gb|CF071685.1|CF071685 FE1_18_C11.b1_A002 Iron-deficient se... 40 0.23
gb|CF480753.1|CF480753 POL1_67_E03.g1_A002 Pollen Sorghum b... 40 0.23
gb|CF757327.1|CF757327 DSAF1_16_E09.g1_A011 Drought-stresse... 40 0.23
gb|CF757661.1|CF757661 DSAF1_20_F09.g1_A011 Drought-stresse... 40 0.23
gb|CF760365.1|CF760365 DSAF1_59_C10.b1_A011 Drought-stresse... 40 0.23
gb|CN138703.1|CN138703 OX1_13_A04.g1_A002 Oxidatively-stres... 40 0.23
>gb|AW746257.1|AW746257 WS1_40_H02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 466 bits (235), Expect = e-129
Identities = 272/284 (95%), Gaps = 4/284 (1%)
Strand = Plus / Minus
Query: 242 tatgatactacgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtc 301
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 375 tatgatactacgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtc 320
Query: 302 tcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatg 361
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 319 tcagtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatg 260
Query: 362 agcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgag 421
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 259 agcatccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgag 200
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 140
Query: 482 gtgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 139 gtgaagcagcgcaccgggatgatcatcttcgccgccgccgccgc 96
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 92 gttatatcgattaaaatctccaacatcgtagcatagatgcaacatgca 139
|||||||| ||||||| |||||| || | ||||||||||||||||||
Sbjct: 515 gttatatcacttaaaatatccaacgtcatggcatagatgcaacatgca 468
>gb|CX608159.1|CX608159 ANR1_37_B07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B07_A002 3', mRNA sequence
Length = 532
Score = 466 bits (235), Expect = e-129
Identities = 272/284 (95%), Gaps = 4/284 (1%)
Strand = Plus / Minus
Query: 242 tatgatactacgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtc 301
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 340 tatgatactacgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtc 285
Query: 302 tcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatg 361
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 284 tcagtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatg 225
Query: 362 agcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgag 421
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 224 agcatccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgag 165
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 105
Query: 482 gtgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 104 gtgaagcagcgcaccgggatgatcatcttcgccgccgccgccgc 61
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 92 gttatatcgattaaaatctccaacatcgtagcatagatgcaacatgca 139
|||||||| ||||||| |||||| || | ||||||||||||||||||
Sbjct: 480 gttatatcacttaaaatatccaacgtcatggcatagatgcaacatgca 433
>gb|CX608247.1|CX608247 ANR1_37_B07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B07_A002 5', mRNA sequence
Length = 543
Score = 466 bits (235), Expect = e-129
Identities = 272/284 (95%), Gaps = 4/284 (1%)
Strand = Plus / Minus
Query: 242 tatgatactacgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtc 301
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 338 tatgatactacgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtc 283
Query: 302 tcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatg 361
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 282 tcagtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatg 223
Query: 362 agcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgag 421
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 222 agcatccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgag 163
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 103
Query: 482 gtgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 102 gtgaagcagcgcaccgggatgatcatcttcgccgccgccgccgc 59
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 92 gttatatcgattaaaatctccaacatcgtagcatagatgcaacatgca 139
|||||||| ||||||| |||||| || | ||||||||||||||||||
Sbjct: 478 gttatatcacttaaaatatccaacgtcatggcatagatgcaacatgca 431
>gb|AW924253.1|AW924253 WS1_51_B07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 348
Score = 464 bits (234), Expect = e-129
Identities = 271/283 (95%), Gaps = 4/283 (1%)
Strand = Plus / Minus
Query: 243 atgatactacgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtct 302
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 348 atgatactacgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtct 293
Query: 303 cagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatga 362
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 292 cagtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatga 233
Query: 363 gcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagt 422
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 232 gcatccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagt 173
Query: 423 agtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcagg 113
Query: 483 tgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 112 tgaagcagcgcaccgggatgatcatcttcgccgccgccgccgc 70
>gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 490
Score = 458 bits (231), Expect = e-127
Identities = 271/284 (95%), Gaps = 4/284 (1%)
Strand = Plus / Minus
Query: 242 tatgatactacgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtc 301
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 297 tatgatactacgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtc 242
Query: 302 tcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatg 361
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 241 tcagtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatg 182
Query: 362 agcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgag 421
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 agcatccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgag 122
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 62
Query: 482 gtgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 61 gtgaagcagcgcaccgggatgatcatcttcgccggcgccgccgc 18
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 92 gttatatcgattaaaatctccaacatcgtagcatagatgcaacatgca 139
|||||||| ||||||| |||||| || | ||||||||||||||||||
Sbjct: 437 gttatatcacttaaaatatccaacgtcatggcatagatgcaacatgca 390
>gb|BI140000.1|BI140000 IP1_48_F03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 627
Score = 440 bits (222), Expect = e-122
Identities = 262/275 (95%), Gaps = 4/275 (1%)
Strand = Plus / Minus
Query: 251 acgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtctcagtcttc 310
|||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 627 acgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtctcagtcttc 572
Query: 311 tccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcattcgc 370
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 571 tccagtgtattgtagttgagcaatctctcaatgaggtcaacatgggtcatgagcatccgc 512
Query: 371 ctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcggcc 430
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 511 ctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagtagtcggcc 452
Query: 431 tggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaagcag 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaagcag 392
Query: 491 cgcaccggtatgatcatcttcgccgccgccgccgc 525
|||||||| ||||||||||||||||||||||||||
Sbjct: 391 cgcaccgggatgatcatcttcgccgccgccgccgc 357
>gb|BI139744.1|BI139744 IP1_48_F03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 450
Score = 420 bits (212), Expect = e-116
Identities = 246/257 (95%), Gaps = 4/257 (1%)
Strand = Plus / Minus
Query: 242 tatgatactacgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtc 301
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 257 tatgatactacgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtc 202
Query: 302 tcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatg 361
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcagtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatg 142
Query: 362 agcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgag 421
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 141 agcatccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgag 82
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 22
Query: 482 gtgaagcagcgcaccgg 498
|||||||||||||||||
Sbjct: 21 gtgaagcagcgcaccgg 5
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 92 gttatatcgattaaaatctccaacatcgtagcatagatgcaacatgca 139
|||||||| ||||||| |||||| || | ||||||||||||||||||
Sbjct: 397 gttatatcacttaaaatatccaacgtcatggcatagatgcaacatgca 350
>gb|CF071236.1|CF071236 FE1_16_E07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_E07_A002 3', mRNA sequence
Length = 422
Score = 371 bits (187), Expect = e-101
Identities = 221/232 (95%), Gaps = 4/232 (1%)
Strand = Plus / Minus
Query: 242 tatgatactacgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtc 301
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 228 tatgatactacgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtc 173
Query: 302 tcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatg 361
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 172 tcagtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatg 113
Query: 362 agcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgag 421
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 112 agcatccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgag 53
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 92 gttatatcgattaaaatctccaacatcgtagcatagatgcaacatgca 139
|||||||| ||||||| |||||| || | ||||||||||||||||||
Sbjct: 368 gttatatcacttaaaatatccaacgtcatggcatagatgcaacatgca 321
>gb|BE917644.1|BE917644 OV1_6_C09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 396
Score = 168 bits (85), Expect = 4e-040
Identities = 184/217 (84%)
Strand = Plus / Minus
Query: 305 gtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagc 364
||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||| |||
Sbjct: 253 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 194
Query: 365 attcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtag 424
|||||||| |||||||| ||| || | || ||| |||||||||| | || |||
Sbjct: 193 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 134
Query: 425 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 484
|| ||||||| ||| |||||||| |||||||||| ||| |||||||||||||| |||
Sbjct: 133 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 74
Query: 485 aagcagcgcaccggtatgatcatcttcgccgccgccg 521
|||||||||||||| ||||||||||||||||||||||
Sbjct: 73 aagcagcgcaccgggatgatcatcttcgccgccgccg 37
>gb|BE917721.1|BE917721 OV1_6_C09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 480
Score = 168 bits (85), Expect = 4e-040
Identities = 184/217 (84%)
Strand = Plus / Minus
Query: 305 gtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagc 364
||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||| |||
Sbjct: 253 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 194
Query: 365 attcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtag 424
|||||||| |||||||| ||| || | || ||| |||||||||| | || |||
Sbjct: 193 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 134
Query: 425 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 484
|| ||||||| ||| |||||||| |||||||||| ||| |||||||||||||| |||
Sbjct: 133 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 74
Query: 485 aagcagcgcaccggtatgatcatcttcgccgccgccg 521
|||||||||||||| ||||||||||||||||||||||
Sbjct: 73 aagcagcgcaccgggatgatcatcttcgccgccgccg 37
>gb|CF480318.1|CF480318 POL1_65_B09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_B09_A002 3', mRNA sequence
Length = 399
Score = 168 bits (85), Expect = 4e-040
Identities = 184/217 (84%)
Strand = Plus / Minus
Query: 305 gtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagc 364
||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||| |||
Sbjct: 236 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 177
Query: 365 attcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtag 424
|||||||| |||||||| ||| || | || ||| |||||||||| | || |||
Sbjct: 176 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 117
Query: 425 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 484
|| ||||||| ||| |||||||| |||||||||| ||| |||||||||||||| |||
Sbjct: 116 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 57
Query: 485 aagcagcgcaccggtatgatcatcttcgccgccgccg 521
|||||||||||||| ||||||||||||||||||||||
Sbjct: 56 aagcagcgcaccgggatgatcatcttcgccgccgccg 20
>gb|CF480395.1|CF480395 POL1_65_B09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_B09_A002 5', mRNA sequence
Length = 504
Score = 168 bits (85), Expect = 4e-040
Identities = 184/217 (84%)
Strand = Plus / Minus
Query: 305 gtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagc 364
||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||| |||
Sbjct: 317 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 258
Query: 365 attcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtag 424
|||||||| |||||||| ||| || | || ||| |||||||||| | || |||
Sbjct: 257 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 198
Query: 425 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 484
|| ||||||| ||| |||||||| |||||||||| ||| |||||||||||||| |||
Sbjct: 197 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 138
Query: 485 aagcagcgcaccggtatgatcatcttcgccgccgccg 521
|||||||||||||| ||||||||||||||||||||||
Sbjct: 137 aagcagcgcaccgggatgatcatcttcgccgccgccg 101
>gb|CF488916.1|CF488916 POL1_53_B08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_53_B08_A002 3', mRNA sequence
Length = 462
Score = 168 bits (85), Expect = 4e-040
Identities = 184/217 (84%)
Strand = Plus / Minus
Query: 305 gtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagc 364
||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||| |||
Sbjct: 261 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 202
Query: 365 attcgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtag 424
|||||||| |||||||| ||| || | || ||| |||||||||| | || |||
Sbjct: 201 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 142
Query: 425 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 484
|| ||||||| ||| |||||||| |||||||||| ||| |||||||||||||| |||
Sbjct: 141 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 82
Query: 485 aagcagcgcaccggtatgatcatcttcgccgccgccg 521
|||||||||||||| ||||||||||||||||||||||
Sbjct: 81 aagcagcgcaccgggatgatcatcttcgccgccgccg 45
>gb|BZ349519.1|BZ349519 hr41f08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr41f08 5', DNA sequence
Length = 484
Score = 123 bits (62), Expect = 2e-026
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 412 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 219
Query: 472 ct 473
||
Sbjct: 220 ct 221
>gb|CW058903.1|CW058903 104_301_10519003_114_30158 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519003, DNA
sequence
Length = 622
Score = 123 bits (62), Expect = 2e-026
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 412 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 265
Query: 472 ct 473
||
Sbjct: 266 ct 267
Score = 103 bits (52), Expect = 2e-020
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 470 accttgccgcaggtgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 545 accttgccgcaggtgaagcagcgcaccgggatgatcatcttcgccgccgccgccgc 600
>gb|CW327725.1|CW327725 104_823_11478908_116_35982_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478908, DNA
sequence
Length = 237
Score = 123 bits (62), Expect = 2e-026
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 412 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 84
Query: 472 ct 473
||
Sbjct: 85 ct 86
>gb|CW327726.1|CW327726 104_823_11478908_148_35981_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478908, DNA
sequence
Length = 237
Score = 123 bits (62), Expect = 2e-026
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 412 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 152
Query: 472 ct 473
||
Sbjct: 151 ct 150
>gb|CW386919.1|CW386919 fsbb001f071a21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071a21, DNA
sequence
Length = 454
Score = 103 bits (52), Expect = 2e-020
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 470 accttgccgcaggtgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 279 accttgccgcaggtgaagcagcgcaccgggatgatcatcttcgccgccgccgccgc 224
>gb|CW489220.1|CW489220 fsbb001f274a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274a14, DNA
sequence
Length = 534
Score = 103 bits (52), Expect = 2e-020
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 470 accttgccgcaggtgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 190 accttgccgcaggtgaagcagcgcaccgggatgatcatcttcgccgccgccgccgc 245
>gb|CW489546.1|CW489546 fsbb001f274i17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274i17, DNA
sequence
Length = 588
Score = 103 bits (52), Expect = 2e-020
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 470 accttgccgcaggtgaagcagcgcaccggtatgatcatcttcgccgccgccgccgc 525
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 190 accttgccgcaggtgaagcagcgcaccgggatgatcatcttcgccgccgccgccgc 245
>gb|CW132443.1|CW132443 104_515_11116214_116_34799_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116214, DNA
sequence
Length = 714
Score = 93.7 bits (47), Expect = 2e-017
Identities = 69/76 (90%), Gaps = 4/76 (5%)
Strand = Plus / Minus
Query: 242 tatgatactacgaaacagtagtgctttcagagcatgatatgcttgctcacttaacttgtc 301
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 173 tatgatactacgaaacagtagtgcttttggagcatgatgtgct----cacttaacttgtc 118
Query: 302 tcagtcttctccagtg 317
||||||||||||||||
Sbjct: 117 tcagtcttctccagtg 102
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 92 gttatatcgattaaaatctccaacatcgtagcatagatgcaacatgca 139
|||||||| ||||||| |||||| || | ||||||||||||||||||
Sbjct: 313 gttatatcacttaaaatatccaacgtcatggcatagatgcaacatgca 266
>gb|CL163922.1|CL163922 104_357_10807515_114_31812_267 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807515, DNA
sequence
Length = 726
Score = 87.7 bits (44), Expect = 1e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 318 tgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcattcgcctgcagc 377
||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 240 tgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagcattcgcctacagc 299
Query: 378 agta 381
||||
Sbjct: 300 agta 303
>gb|CW035318.1|CW035318 104_265_10503085_115_30379 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503085, DNA
sequence
Length = 630
Score = 87.7 bits (44), Expect = 1e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 318 tgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcattcgcctgcagc 377
||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 394 tgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagcattcgcctacagc 335
Query: 378 agta 381
||||
Sbjct: 334 agta 331
>gb|CW481098.1|CW481098 fsbb001f240h20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240h20, DNA
sequence
Length = 552
Score = 87.7 bits (44), Expect = 1e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 318 tgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcattcgcctgcagc 377
||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 210 tgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagcattcgcctacagc 269
Query: 378 agta 381
||||
Sbjct: 270 agta 273
>gb|CW492839.1|CW492839 fsbb001f283f11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283f11, DNA
sequence
Length = 531
Score = 87.7 bits (44), Expect = 1e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 318 tgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcattcgcctgcagc 377
||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 171 tgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagcattcgcctacagc 112
Query: 378 agta 381
||||
Sbjct: 111 agta 108
>gb|CW147524.1|CW147524 104_540_11139553_148_34992_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139553, DNA
sequence
Length = 684
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 378 catcttcgccgccgccgccgcagc 401
>gb|CW153361.1|CW153361 104_555_11145007_116_36343_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145007, DNA
sequence
Length = 617
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 316 catcttcgccgccgccgccgcagc 339
>gb|CW159138.1|CW159138 104_565_11149202_116_36406_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149202, DNA
sequence
Length = 726
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 103 catcttcgccgccgccgccgcagc 126
>gb|CW217127.1|CW217127 104_650_11195490_148_37131_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195490, DNA
sequence
Length = 671
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 164 catcttcgccgccgccgccgcagc 187
>gb|CW405227.1|CW405227 fsbb001f097l05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097l05, DNA
sequence
Length = 687
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 386 catcttcgccgccgccgccgcagc 409
>gb|CD213967.1|CD213967 HS1_69_D10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_69_D10_A012 5', mRNA sequence
Length = 521
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 201 catcttcgccgccgccgccgcagc 178
>gb|CD235328.1|CD235328 SS1_28_G08.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_28_G08_A012 5', mRNA sequence
Length = 545
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 149 catcttcgccgccgccgccgcagc 126
>gb|CF428977.1|CF428977 PH1_18_G05.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_G05_A002 5', mRNA sequence
Length = 716
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 209 catcttcgccgccgccgccgcagc 186
>gb|CN140208.1|CN140208 OX1_34_F04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_34_F04_A002 5', mRNA sequence
Length = 674
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 505 catcttcgccgccgccgccgcagc 528
||||||||||||||||||||||||
Sbjct: 120 catcttcgccgccgccgccgcagc 97
>gb|CW135874.1|CW135874 104_520_11118077_148_34834_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118077, DNA
sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 ggaacaattccagagcatcca 404
|||||||||||||||||||||
Sbjct: 91 ggaacaattccagagcatcca 111
>gb|CD205983.1|CD205983 HS1_19_D08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_D08_A012 5', mRNA sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 104 tcatcttcgccgccgccgccg 84
>gb|CD211677.1|CD211677 HS1_63_E02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_63_E02_A012 5', mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 113 tcatcttcgccgccgccgccg 93
>gb|CD231139.1|CD231139 SS1_8_C02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_8_C02_A012 5', mRNA sequence
Length = 462
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 96 tcatcttcgccgccgccgccg 76
>gb|CD233257.1|CD233257 SS1_12_H01.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_12_H01_A012 5', mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 582 tcatcttcgccgccgccgccg 562
>gb|CD234277.1|CD234277 SS1_26_B03.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_26_B03_A012 5', mRNA sequence
Length = 631
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 108 tcatcttcgccgccgccgccg 88
>gb|CD235179.1|CD235179 SS1_21_D05.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_21_D05_A012 5', mRNA sequence
Length = 603
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 102 tcatcttcgccgccgccgccg 82
>gb|CD235725.1|CD235725 SS1_37_G01.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_G01_A012 5', mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 65 tcatcttcgccgccgccgccg 45
>gb|CD235877.1|CD235877 SS1_24_D05.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_24_D05_A012 5', mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 110 tcatcttcgccgccgccgccg 90
>gb|CD235941.1|CD235941 SS1_24_A07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_24_A07_A012 5', mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 504 tcatcttcgccgccgccgccg 524
|||||||||||||||||||||
Sbjct: 118 tcatcttcgccgccgccgccg 98
>gb|CL162156.1|CL162156 104_354_10806212_114_31830_116 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806212, DNA
sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 511 cgccgccgccgccgcagctg 530
||||||||||||||||||||
Sbjct: 294 cgccgccgccgccgcagctg 313
>gb|CW056637.1|CW056637 104_298_10517789_114_30151 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517789, DNA
sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 511 cgccgccgccgccgcagctg 530
||||||||||||||||||||
Sbjct: 551 cgccgccgccgccgcagctg 570
>gb|CW065116.1|CW065116 104_311_10522957_115_30121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522957, DNA
sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 511 cgccgccgccgccgcagctg 530
||||||||||||||||||||
Sbjct: 323 cgccgccgccgccgcagctg 342
>gb|CW067431.1|CW067431 104_315_10524273_114_30124 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524273, DNA
sequence
Length = 664
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 507 tcttcgccgccgccgccgcagctg 530
||||||||||||||||||| ||||
Sbjct: 613 tcttcgccgccgccgccgccgctg 590
>gb|CW105862.1|CW105862 104_475_11013106_116_34457_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11013106, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 511 cgccgccgccgccgcagctg 530
||||||||||||||||||||
Sbjct: 533 cgccgccgccgccgcagctg 552
>gb|CW210265.1|CW210265 104_640_11189703_116_36997_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189703, DNA
sequence
Length = 657
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 511 cgccgccgccgccgcagctg 530
||||||||||||||||||||
Sbjct: 399 cgccgccgccgccgcagctg 418
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 322,726
Number of Sequences: 832831
Number of extensions: 322726
Number of successful extensions: 143106
Number of sequences better than 0.5: 80
Number of HSP's better than 0.5 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142852
Number of HSP's gapped (non-prelim): 143
length of query: 608
length of database: 491,359,669
effective HSP length: 19
effective length of query: 589
effective length of database: 475,535,880
effective search space: 280090633320
effective search space used: 280090633320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)