BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.1
(1264 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD228570.1|CD228570 CCC1_8_A06.g1_A007 Callus culture/ce... 797 0.0
gb|BM324254.1|BM324254 PIC1_26_B07.b1_A002 Pathogen-infecte... 755 0.0
gb|CN139974.1|CN139974 OX1_33_F07.b1_A002 Oxidatively-stres... 662 0.0
gb|BG159361.1|BG159361 OV2_6_G12.g1_A002 Ovary 2 (OV2) Sorg... 609 e-172
gb|BM328755.1|BM328755 PIC1_26_B07.g1_A002 Pathogen-infecte... 468 e-130
gb|BG465944.1|BG465944 RHIZ2_46_E09.g1_A003 Rhizome2 (RHIZ2... 442 e-122
gb|CD228545.1|CD228545 CCC1_8_A06.b1_A007 Callus culture/ce... 422 e-116
gb|CN140055.1|CN140055 OX1_33_F07.g1_A002 Oxidatively-stres... 329 4e-088
gb|BG159615.1|BG159615 OV2_6_G12.b1_A002 Ovary 2 (OV2) Sorg... 323 2e-086
gb|CW070747.1|CW070747 104_322_10590981_116_30543 Sorghum m... 242 7e-062
gb|AW564073.1|AW564073 LG1_282_A07.b1_A002 Light Grown 1 (L... 226 4e-057
gb|BG102344.1|BG102344 RHIZ2_22_F05.b1_A003 Rhizome2 (RHIZ2... 194 1e-047
gb|BG159352.1|BG159352 OV2_6_F12.g1_A002 Ovary 2 (OV2) Sorg... 194 1e-047
gb|CW438004.1|CW438004 fsbb001f155g11f0 Sorghum methylation... 180 2e-043
gb|CW161271.1|CW161271 104_568_11150325_148_36430_093 Sorgh... 168 8e-040
gb|BG101804.1|BG101804 RHIZ2_22_F05.g1_A003 Rhizome2 (RHIZ2... 129 7e-028
gb|CW070746.1|CW070746 104_322_10590981_114_30544 Sorghum m... 103 4e-020
gb|BZ351623.1|BZ351623 hw04f09.g1 WGS-SbicolorF (JM107 adap... 96 1e-017
gb|AW283881.1|AW283881 LG1_282_A07.g1_A002 Light Grown 1 (L... 80 6e-013
gb|CW410942.1|CW410942 fsbb001f105o10k0 Sorghum methylation... 64 3e-008
gb|CW444206.1|CW444206 fsbb001f164l01k0 Sorghum methylation... 64 3e-008
gb|CD227672.1|CD227672 CCC1_53_D08.b1_A007 Callus culture/c... 48 0.002
gb|CX612583.1|CX612583 GABR1_3_F09.b1_A002 GA- or brassinol... 48 0.002
gb|CX608003.1|CX608003 ANR1_32_C02.b1_A002 Anaerobic roots ... 42 0.12
gb|CL161950.1|CL161950 104_353_10806077_114_31828_365 Sorgh... 40 0.49
gb|CL161951.1|CL161951 104_353_10806077_116_31829_365 Sorgh... 40 0.49
gb|CW370097.1|CW370097 fsbb001f044n13f0 Sorghum methylation... 40 0.49
gb|BG355405.1|BG355405 EM1_16_A11.b1_A002 Embryo 1 (EM1) So... 40 0.49
>gb|CD228570.1|CD228570 CCC1_8_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A06_A007 5', mRNA sequence
Length = 640
Score = 797 bits (402), Expect = 0.0
Identities = 453/470 (96%)
Strand = Plus / Minus
Query: 781 tgtcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtg 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tgtcagtctgaaggaccaccgttgatgttatgaatccaaatgcatattcaccaattcgtg 581
Query: 841 gatgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcag 900
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 580 gatgacgaattattgcaacttctttgaaagctgttgtattttgatctggtgaaattgcag 521
Query: 901 tgctgacttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaacc 960
|||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 520 tgctgacttgctttgacgctgaatatagatgccttacaaatggcattttctttataaacc 461
Query: 961 actcgcccacccagaagatggttgaaccaacccatgaagaaacaaatattccaaccagaa 1020
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 460 actctcctacccagaagatggttgaaccaacccatgaagaaacaaatagtccaaccagaa 401
Query: 1021 atatgaataccagagaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcat 1080
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 400 atatgaataccagagaagtcaaaaaaccaagaccaaatatgtcaactccaaattttgcat 341
Query: 1081 ataggggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtga 1140
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 340 ataagggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaatgtga 281
Query: 1141 ctgcaacaggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaa 1200
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 280 ctgcaacagggaaaaggactacgcatccagtcataaattttcttgagacccaactttgaa 221
Query: 1201 gaacagcacagcatgccttgcgtgtggaggtggtgggcgagctgggtcgc 1250
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaacagcacagcatgccttgcgtgtggaggtggtgggcgagctgggtcgc 171
>gb|BM324254.1|BM324254 PIC1_26_B07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 755 bits (381), Expect = 0.0
Identities = 429/445 (96%)
Strand = Plus / Minus
Query: 806 tgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttcttt 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 558 tgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctct 499
Query: 866 gaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaata 925
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 498 gaaagctgttgtattttgatctggtgaaattgcagtgctgacttgctttgacgctgaata 439
Query: 926 tatatgtcttacaaatggcattttctttataaaccactcgcccacccagaagatggttga 985
|| ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 438 tagatgccttacaaatggcattttctttataaaccactctcctacccagaagatggttga 379
Query: 986 accaacccatgaagaaacaaatattccaaccagaaatatgaataccagagaagtcaaaaa 1045
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 accaacccatgaagaaacaaatagtccaaccagaaatatgaataccagagaagtcaaaaa 319
Query: 1046 accaagaccaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaac 1105
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 318 accaagaccaaatatgtcgactccaaattttgcatataagggactgaaaaaaccatcaac 259
Query: 1106 aaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaaggactacaca 1165
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 258 aaattgaataaaccaccatgtgatgaagaatgtgactgcaacagggaaaaggactacgca 199
Query: 1166 tccagtcataaactttcttgagacccaactttgaagaacagcacagcatgccttgcgtgt 1225
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tccagtcataaattttcttgagacccaactttgaagaacagcacagcatgccttgcgtgt 139
Query: 1226 ggaggtggtgggcgagctgggtcgc 1250
|||||||||||||||||||||||||
Sbjct: 138 ggaggtggtgggcgagctgggtcgc 114
>gb|CN139974.1|CN139974 OX1_33_F07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_F07_A002 3', mRNA sequence
Length = 608
Score = 662 bits (334), Expect = 0.0
Identities = 391/410 (95%)
Strand = Plus / Minus
Query: 555 ttacatcacgtcattctatttagacgaatgttctggcttttccgtggcatgggctccagt 614
|||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 417 ttacatcacgacattctatttagacgaatgctctggcttttccgcggcataggctccagt 358
Query: 615 gatgcaatcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcga 674
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 357 gatgcaatcacctgaggcatggtcattcctcctgaaacaattatttcaattccttcccga 298
Query: 675 atggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtat 734
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 297 atggataaattaggtcttataatctcctcacagttcaccagaaatatgtcaccgatgtat 238
Query: 735 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 794
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agatgatttgttgggacatacacactacacagttcttcatcgcctttgtcagtctgaagg 178
Query: 795 accacagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattatt 854
||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct: 177 accaccgttgatgttatgaatcccaatgcgtattcgccaattcggggatgacgaattatt 118
Query: 855 gcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgcttt 914
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gcaacttctttgaaagctgttgtattttgatctggtgaaattgcagtgctgacttgcttt 58
Query: 915 gatgctgaatatatatgtcttacaaatggcattttctttataaaccactc 964
|| |||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 57 gacgctgaatatagatgccttacaaatggcattttctttataaaccactc 8
Score = 121 bits (61), Expect = 2e-025
Identities = 129/145 (88%), Gaps = 5/145 (3%)
Strand = Plus / Minus
Query: 376 attatcccagggcatcaacacgatgcttccc-tgcagtatggaaatgccacaatggctca 434
|||||||||| |||||||||||| ||||||| |||| | |||||| ||||| |||||||
Sbjct: 578 attatcccagagcatcaacacgaggcttcccctgcact-tggaaa-gccacgatggctcg 521
Query: 435 -gcacaaagttgctcctctatccaaatcacatggctacgcatatagccaaggcaccctaa 493
||||| |||||||||||||||| |||||||||| || ||||| |||||||||||| ||
Sbjct: 520 cgcacagagttgctcctctatcccaatcacatgg-taagcatacagccaaggcacctgaa 462
Query: 494 tcgtgccccacaggtcatgctatct 518
|||||||||||||||||||||||||
Sbjct: 461 tcgtgccccacaggtcatgctatct 437
>gb|BG159361.1|BG159361 OV2_6_G12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 486
Score = 609 bits (307), Expect = e-172
Identities = 334/343 (97%)
Strand = Plus / Minus
Query: 555 ttacatcacgtcattctatttagacgaatgttctggcttttccgtggcatgggctccagt 614
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 343 ttacatcacgtcattctatttagacgaatgctctggcttttccgcggcataggctccagt 284
Query: 615 gatgcaatcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcga 674
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 283 gatgcaatcacctgaggcatggtcattcctcctgaaacaattatttcaattccttcccga 224
Query: 675 atggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtat 734
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atggataaattaggtcttataatctcctcagagttcaccagaaatatgtcaccgatgtat 164
Query: 735 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 104
Query: 795 accacagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattatt 854
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 accaccgttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattatt 44
Query: 855 gcaacttctttgaaagcagtcgtattttgatctggtgaaattg 897
||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 43 gcaacttctttgaaagctgttgtattttgatctggtgaaattg 1
Score = 129 bits (65), Expect = 7e-028
Identities = 93/101 (92%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 418 aatgccacaatggctcagcacaaagttgctcctctatccaaatcacatggctacgcatat 477
|||||||| ||||||| ||||| ||||||||||||||||||||||||||| || |||||
Sbjct: 462 aatgccacgatggctcggcacagagttgctcctctatccaaatcacatgg-taagcatac 404
Query: 478 agccaaggcaccctaatcgtgccccacaggtcatgctatct 518
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 403 agccaaggcacctgaatcgtgccccacaggtcatgctatct 363
>gb|BM328755.1|BM328755 PIC1_26_B07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 574
Score = 468 bits (236), Expect = e-130
Identities = 257/264 (97%)
Strand = Plus / Minus
Query: 555 ttacatcacgtcattctatttagacgaatgttctggcttttccgtggcatgggctccagt 614
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 264 ttacatcacgtcattctatttagacgaatgctctggcttttccgcggcataggctccagt 205
Query: 615 gatgcaatcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcga 674
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 204 gatgcaatcacctgaggcatggtcattcctcctgaaacaattatttcaattccttcccga 145
Query: 675 atggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtat 734
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atggataaattaggtcttataatctcctcagagttcaccagaaatatgtcaccgatgtat 85
Query: 735 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 25
Query: 795 accacagttgatgttatgaatcca 818
||||| ||||||||||||||||||
Sbjct: 24 accaccgttgatgttatgaatcca 1
Score = 147 bits (74), Expect = 3e-033
Identities = 129/142 (90%), Gaps = 4/142 (2%)
Strand = Plus / Minus
Query: 378 tatcccagggcatcaacacgatgcttccc-tgcagtatggaaatgccacaatggctcagc 436
|||||||| |||||||||||||||||||| |||| | ||||| |||||| ||||||| ||
Sbjct: 422 tatcccagagcatcaacacgatgcttcccctgcact-tggaa-tgccacgatggctcggc 365
Query: 437 acaaagttgctcctctatccaaatcacatggctacgcatatagccaaggcaccctaatcg 496
||| ||||||||||||||||||||||||||| || ||||| |||||||||||| |||||
Sbjct: 364 acagagttgctcctctatccaaatcacatgg-taagcatacagccaaggcacctgaatcg 306
Query: 497 tgccccacaggtcatgctatct 518
||||||||||||||||||||||
Sbjct: 305 tgccccacaggtcatgctatct 284
Score = 111 bits (56), Expect = 2e-022
Identities = 101/116 (87%)
Strand = Plus / Minus
Query: 73 ctttgtaacgtaagatgttatacagcacgtagttacaaacgaatttaatcaattatacac 132
|||| ||||||||||||||||||||| | |||| ||||||||||||||| | | ||||
Sbjct: 559 ctttataacgtaagatgttatacagcgcacagttgtaaacgaatttaatcactcacacac 500
Query: 133 ctcacgcgtagccgctaacattttggaccagtactagtaagtgcacaaagagtagc 188
||||||||| | || ||||||||||||| || |||||| |||||||||||||||||
Sbjct: 499 ctcacgcgttgacgttaacattttggacaagcactagtcagtgcacaaagagtagc 444
>gb|BG465944.1|BG465944 RHIZ2_46_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 442 bits (223), Expect = e-122
Identities = 238/243 (97%)
Strand = Plus / Minus
Query: 555 ttacatcacgtcattctatttagacgaatgttctggcttttccgtggcatgggctccagt 614
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 243 ttacatcacgtcattctatttagacgaatgctctggcttttccgcggcataggctccagt 184
Query: 615 gatgcaatcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcga 674
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 183 gatgcaatcacctgaggcatggtcattcctcctgaaacaattatttcaattccttcccga 124
Query: 675 atggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtat 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtat 64
Query: 735 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 4
Query: 795 acc 797
|||
Sbjct: 3 acc 1
Score = 135 bits (68), Expect = 1e-029
Identities = 128/143 (89%), Gaps = 5/143 (3%)
Strand = Plus / Minus
Query: 378 tatcccagggcatcaacacgatgcttccc--tgcagtatggaaatgccacaatggctcag 435
|||||||| |||||||||||||||||||| |||| | ||||| |||||| ||||| | |
Sbjct: 402 tatcccagagcatcaacacgatgcttccccctgcact-tggaa-tgccacgatggcacgg 345
Query: 436 cacaaagttgctcctctatccaaatcacatggctacgcatatagccaaggcaccctaatc 495
|||| ||||||||||||||||||||||||||| || ||||| |||||||||||| ||||
Sbjct: 344 cacagagttgctcctctatccaaatcacatgg-taagcatacagccaaggcacctgaatc 286
Query: 496 gtgccccacaggtcatgctatct 518
|||||||||||||||||||||||
Sbjct: 285 gtgccccacaggtcatgctatct 263
Score = 119 bits (60), Expect = 7e-025
Identities = 102/116 (87%)
Strand = Plus / Minus
Query: 73 ctttgtaacgtaagatgttatacagcacgtagttacaaacgaatttaatcaattatacac 132
|||| ||||||||||||||||||||| | |||| ||||||||||||||| | | ||||
Sbjct: 539 ctttataacgtaagatgttatacagcgcacagttgtaaacgaatttaatcactcacacac 480
Query: 133 ctcacgcgtagccgctaacattttggaccagtactagtaagtgcacaaagagtagc 188
||||||||| | || ||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 479 ctcacgcgttgacgttaacattttggacaagtactagtcagtgcacaaagagtagc 424
>gb|CD228545.1|CD228545 CCC1_8_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A06_A007 3', mRNA sequence
Length = 652
Score = 422 bits (213), Expect = e-116
Identities = 234/241 (97%)
Strand = Plus / Minus
Query: 555 ttacatcacgtcattctatttagacgaatgttctggcttttccgtggcatgggctccagt 614
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 241 ttacatcacgtcattctatttagacgaatgctctggcttttccgcggcataggctccagt 182
Query: 615 gatgcaatcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcga 674
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 181 gatgcaatcacctgaggcatggtcattcctcctgaaacaattatttcaattccttcccga 122
Query: 675 atggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtat 734
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 atggataaattaggtcttataatctcctcagagtccaccagaaatatgtcaccgatgtat 62
Query: 735 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaagg 2
Query: 795 a 795
|
Sbjct: 1 a 1
Score = 147 bits (74), Expect = 3e-033
Identities = 129/142 (90%), Gaps = 4/142 (2%)
Strand = Plus / Minus
Query: 378 tatcccagggcatcaacacgatgcttccc-tgcagtatggaaatgccacaatggctcagc 436
|||||||| |||||||||||||||||||| |||| | ||||| |||||| ||||||| ||
Sbjct: 399 tatcccagagcatcaacacgatgcttcccctgcact-tggaa-tgccacgatggctcggc 342
Query: 437 acaaagttgctcctctatccaaatcacatggctacgcatatagccaaggcaccctaatcg 496
||| ||||||||||||||||||||||||||| || ||||| |||||||||||| |||||
Sbjct: 341 acagagttgctcctctatccaaatcacatgg-taagcatacagccaaggcacctgaatcg 283
Query: 497 tgccccacaggtcatgctatct 518
||||||||||||||||||||||
Sbjct: 282 tgccccacaggtcatgctatct 261
Score = 127 bits (64), Expect = 3e-027
Identities = 130/151 (86%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 38 gaaagaagaaatctggtcagagcgttatgtgatctctttgtaacgtaagatgttatacag 97
||||||||||||||||||| || || |||| || |||| ||||||||||||||||||||
Sbjct: 569 gaaagaagaaatctggtcaaag--ttgtgtgctccctttataacgtaagatgttatacag 512
Query: 98 cacgtagttacaaacgaatttaatcaattatacacctcacgcgtagccgctaacattttg 157
| | |||| ||||||||||||||| | | ||||||||||||| | || ||||||||||
Sbjct: 511 cgcacagttgtaaacgaatttaatcactcacacacctcacgcgttgacgttaacattttg 452
Query: 158 gaccagtactagtaagtgcacaaagagtagc 188
||| || |||||| |||||||||||||||||
Sbjct: 451 gacaagcactagtcagtgcacaaagagtagc 421
>gb|CN140055.1|CN140055 OX1_33_F07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_F07_A002 5', mRNA sequence
Length = 431
Score = 329 bits (166), Expect = 4e-088
Identities = 215/230 (93%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 1022 tatgaataccagagaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcata 1081
|||||||||||| ||||||||||| ||||||||||||| ||||| ||||| ||| |||||
Sbjct: 431 tatgaataccagtgaagtcaaaaacccaagaccaaatacgtcgactccaaatttcgcata 372
Query: 1082 taggggactgaaaaaa-ccatcaacaaattgaataaaccaccatgtgatgaagaacgtga 1140
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 371 taagggactgaaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaatgtga 312
Query: 1141 ctgcaacaggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaa 1200
|||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct: 311 ctgcaacagggacaaggactacgcatccagtcataaattttcttgggacccaactttgaa 252
Query: 1201 gaacagcacagcatgccttgcgtgtggaggtggtgggcgagctgggtcgc 1250
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 251 gaacagcacagcatgccttgcctgtggaggtggtgggcgagctgggtcgc 202
>gb|BG159615.1|BG159615 OV2_6_G12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 515
Score = 323 bits (163), Expect = 2e-086
Identities = 184/191 (96%)
Strand = Plus / Minus
Query: 1060 tgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattgaataaacc 1119
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 515 tgtcgactccaaattttgcatataagggactgaaaaaaccatcaacaaattgaataaacc 456
Query: 1120 accatgtgatgaagaacgtgactgcaacaggaaaaaggactacacatccagtcataaact 1179
|||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 455 accatgtgatgaagaatgtgactgcaacagggaaaaggactacgcatccagtcataaatt 396
Query: 1180 ttcttgagacccaactttgaagaacagcacagcatgccttgcgtgtggaggtggtgggcg 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttcttgagacccaactttgaagaacagcacagcatgccttgcgtgtggaggtggtgggcg 336
Query: 1240 agctgggtcgc 1250
|||||||||||
Sbjct: 335 agctgggtcgc 325
>gb|CW070747.1|CW070747 104_322_10590981_116_30543 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10590981, DNA
sequence
Length = 656
Score = 242 bits (122), Expect = 7e-062
Identities = 128/130 (98%)
Strand = Plus / Minus
Query: 661 caattccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaata 720
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 525 caattccttcccgaatggataaattaggtcttataatctcctcagagttcaccagaaata 466
Query: 721 tgtcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgtcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctt 406
Query: 781 tgtcagtctg 790
||||||||||
Sbjct: 405 tgtcagtctg 396
Score = 176 bits (89), Expect = 3e-042
Identities = 98/101 (97%)
Strand = Plus / Minus
Query: 788 ctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacg 847
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ctgaaggaccaccgttgatgttatgaatccaaatgcatattcaccaattcgtggatgacg 96
Query: 848 aattattgcaacttctttgaaagcagtcgtattttgatctg 888
|||||||||||||||||||||||| || |||||||||||||
Sbjct: 95 aattattgcaacttctttgaaagctgttgtattttgatctg 55
>gb|AW564073.1|AW564073 LG1_282_A07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 226 bits (114), Expect = 4e-057
Identities = 240/282 (85%)
Strand = Plus / Minus
Query: 969 acccagaagatggttgaaccaacccatgaagaaacaaatattccaaccagaaatatgaat 1028
|||||||||| ||||||||| ||||| ||||| ||||| ||||| || |||| ||| ||
Sbjct: 484 acccagaagacggttgaacccacccaagaagatacaaagattccgacaagaagtataaac 425
Query: 1029 accagagaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatatagggga 1088
| ||| || || || || ||||| || |||||||| | || | ||||||||| || ||
Sbjct: 424 aacagggaggttaagaacccaagtccgaatatgtcaaaccccagttttgcatagagtggg 365
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 364 ctgaaaaaaccatcgacaaattgaataaaccaccaagtgatgaagaatgtgacagcaatt 305
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
|| ||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 304 gggaaaagaactacacatccagtcataaattttcttgacacccagctttgaagaacagca 245
Query: 1209 cagcatgccttgcgtgtggaggtggtgggcgagctgggtcgc 1250
||||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 244 aagcatgccttgcgagtggacgtgccgggcgagctgggtcgc 203
>gb|BG102344.1|BG102344 RHIZ2_22_F05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 194 bits (98), Expect = 1e-047
Identities = 158/178 (88%)
Strand = Plus / Minus
Query: 1073 ttttgcatataggggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaa 1132
||||||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 ttttgcatagagtgggctgaacaaaccatcaacaaattgaataaaccaccaagtgatgaa 372
Query: 1133 gaacgtgactgcaacaggaaaaaggactacacatccagtcataaactttcttgagaccca 1192
||| ||||| |||| || ||||| || ||||||||||||||||| |||||||| |||||
Sbjct: 371 gaatgtgacagcaattgggaaaagaaccacacatccagtcataaattttcttgacaccca 312
Query: 1193 actttgaagaacagcacagcatgccttgcgtgtggaggtggtgggcgagctgggtcgc 1250
||||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 311 gctttgaagaacagcaaagcatgccttgcgagtggacgtgccgggcgagctgggtcgc 254
>gb|BG159352.1|BG159352 OV2_6_F12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 244
Score = 194 bits (98), Expect = 1e-047
Identities = 110/114 (96%)
Strand = Plus / Minus
Query: 555 ttacatcacgtcattctatttagacgaatgttctggcttttccgtggcatgggctccagt 614
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 114 ttacatcacgtcattctatttagacgaatgctctggcttttccgcggcataggctccagt 55
Query: 615 gatgcaatcacctgaggcatggtcattcctcctgacacaattatttcaattcct 668
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 54 gatgcaatcacctgaggcatggtcattcctcctgaaacaattatttcaattcct 1
Score = 129 bits (65), Expect = 7e-028
Identities = 93/101 (92%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 418 aatgccacaatggctcagcacaaagttgctcctctatccaaatcacatggctacgcatat 477
|||||||| ||||||| ||||| ||||||||||||||||||||||||||| || |||||
Sbjct: 233 aatgccacgatggctcggcacagagttgctcctctatccaaatcacatgg-taagcatac 175
Query: 478 agccaaggcaccctaatcgtgccccacaggtcatgctatct 518
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 174 agccaaggcacctgaatcgtgccccacaggtcatgctatct 134
>gb|CW438004.1|CW438004 fsbb001f155g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f155g11, DNA
sequence
Length = 766
Score = 180 bits (91), Expect = 2e-043
Identities = 103/107 (96%)
Strand = Plus / Minus
Query: 555 ttacatcacgtcattctatttagacgaatgttctggcttttccgtggcatgggctccagt 614
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 214 ttacatcacgtcattctatttagacgaatgctctggcttttccgcggcataggctccagt 155
Query: 615 gatgcaatcacctgaggcatggtcattcctcctgacacaattatttc 661
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 154 gatgcaatcacctgaggcatggtcattcctcctgaaacaattatttc 108
Score = 168 bits (85), Expect = 8e-040
Identities = 140/153 (91%), Gaps = 4/153 (2%)
Strand = Plus / Minus
Query: 378 tatcccagggcatcaacacgatgcttccc-tgcagtatggaaatgccacaatggctcagc 436
|||||||| |||||||||||||||||||| |||| | ||||| |||||| ||||||| ||
Sbjct: 448 tatcccagagcatcaacacgatgcttcccctgcact-tggaa-tgccacgatggctcggc 391
Query: 437 acaaagttgctcctctatccaaatcacatggctacgcatatagccaaggcaccctaatcg 496
||| ||||||||||||||||||||||||||| || ||||| |||||||||||| |||||
Sbjct: 390 acagagttgctcctctatccaaatcacatgg-taagcatacagccaaggcacctgaatcg 332
Query: 497 tgccccacaggtcatgctatctgcttgatgcac 529
|||||||||||||||||||||||||||||||||
Sbjct: 331 tgccccacaggtcatgctatctgcttgatgcac 299
Score = 127 bits (64), Expect = 3e-027
Identities = 130/151 (86%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 38 gaaagaagaaatctggtcagagcgttatgtgatctctttgtaacgtaagatgttatacag 97
||||||||||||||||||| || || |||| || |||| ||||||||||||||||||||
Sbjct: 618 gaaagaagaaatctggtcaaag--ttgtgtgctccctttataacgtaagatgttatacag 561
Query: 98 cacgtagttacaaacgaatttaatcaattatacacctcacgcgtagccgctaacattttg 157
| | |||| ||||||||||||||| | | ||||||||||||| | || ||||||||||
Sbjct: 560 cgcacagttgtaaacgaatttaatcactcacacacctcacgcgttgacgttaacattttg 501
Query: 158 gaccagtactagtaagtgcacaaagagtagc 188
||| || |||||| |||||||||||||||||
Sbjct: 500 gacaagcactagtcagtgcacaaagagtagc 470
>gb|CW161271.1|CW161271 104_568_11150325_148_36430_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150325, DNA
sequence
Length = 746
Score = 168 bits (85), Expect = 8e-040
Identities = 140/153 (91%), Gaps = 4/153 (2%)
Strand = Plus / Minus
Query: 378 tatcccagggcatcaacacgatgcttccc-tgcagtatggaaatgccacaatggctcagc 436
|||||||| |||||||||||||||||||| |||| | ||||| |||||| ||||||| ||
Sbjct: 306 tatcccagagcatcaacacgatgcttcccctgcact-tggaa-tgccacgatggctcggc 249
Query: 437 acaaagttgctcctctatccaaatcacatggctacgcatatagccaaggcaccctaatcg 496
||| ||||||||||||||||||||||||||| || ||||| |||||||||||| |||||
Sbjct: 248 acagagttgctcctctatccaaatcacatgg-taagcatacagccaaggcacctgaatcg 190
Query: 497 tgccccacaggtcatgctatctgcttgatgcac 529
|||||||||||||||||||||||||||||||||
Sbjct: 189 tgccccacaggtcatgctatctgcttgatgcac 157
Score = 127 bits (64), Expect = 3e-027
Identities = 130/151 (86%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 38 gaaagaagaaatctggtcagagcgttatgtgatctctttgtaacgtaagatgttatacag 97
||||||||||||||||||| || || |||| || |||| ||||||||||||||||||||
Sbjct: 476 gaaagaagaaatctggtcaaag--ttgtgtgctccctttataacgtaagatgttatacag 419
Query: 98 cacgtagttacaaacgaatttaatcaattatacacctcacgcgtagccgctaacattttg 157
| | |||| ||||||||||||||| | | ||||||||||||| | || ||||||||||
Sbjct: 418 cgcacagttgtaaacgaatttaatcactcacacacctcacgcgttgacgttaacattttg 359
Query: 158 gaccagtactagtaagtgcacaaagagtagc 188
||| || |||||| |||||||||||||||||
Sbjct: 358 gacaagcactagtcagtgcacaaagagtagc 328
Score = 119 bits (60), Expect = 7e-025
Identities = 69/72 (95%)
Strand = Plus / Minus
Query: 555 ttacatcacgtcattctatttagacgaatgttctggcttttccgtggcatgggctccagt 614
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 72 ttacatcacgtcattctatttagacgaatgctctggcttttccgcggcataggctccagt 13
Query: 615 gatgcaatcacc 626
||||||||||||
Sbjct: 12 gatgcaatcacc 1
>gb|BG101804.1|BG101804 RHIZ2_22_F05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 290
Score = 129 bits (65), Expect = 7e-028
Identities = 179/217 (82%)
Strand = Plus / Minus
Query: 582 atgttctggcttttccgtggcatgggctccagtgatgcaatcacctgaggcatggtcatt 641
||||||||||| ||||| || | || |||||||| | |||||||| ||||| ||||||
Sbjct: 217 atgttctggctcttccgaggtgttggttccagtgacgtgatcacctgtggcatagtcatt 158
Query: 642 cctcctgacacaattatttcaattccttctcgaatggataaattaggtcttatgatctcc 701
|||||||| ||||||||||| || ||||| |||||||| ||||| || || || || ||
Sbjct: 157 cctcctgaaacaattatttctatgccttcacgaatggacaaattgggcctaataatttca 98
Query: 702 tcagagttcaccagaaatatgtcaccgatgtatagatgatttgttggcacatacacacta 761
| ||||| |||| ||| ||||| || || |||| |||||| ||||| ||||| ||||||
Sbjct: 97 gcggagtttaccaaaaagatgtctccaatatataaatgattggttgggacataaacacta 38
Query: 762 cacagttcttcatcgcctttgtcagtctgaaggacca 798
|||| ||||||||| |||||||| |||||||| ||||
Sbjct: 37 cacaattcttcatcacctttgtctgtctgaagaacca 1
>gb|CW070746.1|CW070746 104_322_10590981_114_30544 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10590981, DNA
sequence
Length = 708
Score = 103 bits (52), Expect = 4e-020
Identities = 122/143 (85%), Gaps = 3/143 (2%)
Strand = Plus / Plus
Query: 38 gaaagaagaaatctggtcagagcgttatgtgatctctttgtaacgtaagatgttatacag 97
||||||||||||||||||| || || |||| || |||| ||||||||||||||||||||
Sbjct: 563 gaaagaagaaatctggtcaaag--ttgtgtgctccctttataacgtaagatgttatacag 620
Query: 98 cacgtagttacaaacgaatttaatcaattatacacctcacgcgtagccgctaacattttg 157
| | |||| ||||||||||||||| | | ||||||||||||| | || ||||||||||
Sbjct: 621 cgcacagttgtaaacgaatttaatcactcacacacctcacgcgttgacgttaacattttg 680
Query: 158 gaccagtactagtaagtgcacaa 180
|| ||| |||||| |||||||||
Sbjct: 681 ga-cagcactagtcagtgcacaa 702
>gb|BZ351623.1|BZ351623 hw04f09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw04f09 5', DNA sequence
Length = 610
Score = 95.6 bits (48), Expect = 1e-017
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 1073 ttttgcatataggggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaa 1132
||||||||| || || |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 609 ttttgcatagagtgggctgaaaaaaccatcgacaaattgaataaaccaccaagtgatgaa 550
Query: 1133 gaacgtgactgcaacaggaaaaaggactacac 1164
||| ||||| |||| || ||||| |||||||
Sbjct: 549 gaatgtgacagcaattgggaaaagaactacac 518
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 1164 catccagtcataaactttcttgagacccaactttgaagaacagcacagcatgcct 1218
|||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||
Sbjct: 425 catccagtcataaattttcttgacacccagctttgaagaacagcaaagcatgcct 371
>gb|AW283881.1|AW283881 LG1_282_A07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 446
Score = 79.8 bits (40), Expect = 6e-013
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 582 atgttctggcttttccgtggcatgggctccagtgatgcaatcacctgaggcatggtcatt 641
||||||||||| ||||| || | || |||||||| | |||||||| ||||| ||||||
Sbjct: 135 atgttctggctcttccgaggtgttggttccagtgacgtgatcacctgtggcatagtcatt 76
Query: 642 cctcctgacacaattatttcaattccttctcgaatggataaatt 685
|||||||| ||||||||||| || ||||| |||||||| |||||
Sbjct: 75 cctcctgaaacaattatttctatgccttcacgaatggacaaatt 32
>gb|CW410942.1|CW410942 fsbb001f105o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105o10, DNA
sequence
Length = 747
Score = 63.9 bits (32), Expect = 3e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 582 atgttctggcttttccgtggcatgggctccagtgatgcaatcacctgaggcatggtcatt 641
||||||||||| ||||| || | || |||||||| | |||||||| ||||| ||||||
Sbjct: 306 atgttctggctcttccgaggtgttggttccagtgacgtgatcacctgtggcatagtcatt 247
Query: 642 cctcctgacacaattatttc 661
|||||||| |||||||||||
Sbjct: 246 cctcctgaaacaattatttc 227
>gb|CW444206.1|CW444206 fsbb001f164l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164l01, DNA
sequence
Length = 786
Score = 63.9 bits (32), Expect = 3e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 582 atgttctggcttttccgtggcatgggctccagtgatgcaatcacctgaggcatggtcatt 641
||||||||||| ||||| || | || |||||||| | |||||||| ||||| ||||||
Sbjct: 455 atgttctggctcttccgaggtgttggttccagtgacgtgatcacctgtggcatagtcatt 396
Query: 642 cctcctgacacaattatttc 661
|||||||| |||||||||||
Sbjct: 395 cctcctgaaacaattatttc 376
>gb|CD227672.1|CD227672 CCC1_53_D08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_D08_A007 3', mRNA sequence
Length = 655
Score = 48.1 bits (24), Expect = 0.002
Identities = 120/152 (78%)
Strand = Plus / Minus
Query: 813 aatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagca 872
||||||||||||||||| ||||||| ||| || | ||| || | ||||| ||||| |||
Sbjct: 154 aatccaaatgcatattcgccaattcttgggtgcctaatgatgaccacttccttgaatgca 95
Query: 873 gtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgt 932
| | |||||||| |||||||| |||| |||| |||||| ||||| ||| |||||
Sbjct: 94 tgcttgttttgatcaggtgaaatggcagcactgatttgcttagatgcatcataaatatgg 35
Query: 933 cttacaaatggcattttctttataaaccactc 964
| |||||||||||| ||||| ||||||||
Sbjct: 34 cgaacaaatggcattcgttttatgaaccactc 3
>gb|CX612583.1|CX612583 GABR1_3_F09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_3_F09_A002 3', mRNA sequence
Length = 724
Score = 48.1 bits (24), Expect = 0.002
Identities = 120/152 (78%)
Strand = Plus / Minus
Query: 813 aatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagca 872
||||||||||||||||| ||||||| ||| || | ||| || | ||||| ||||| |||
Sbjct: 286 aatccaaatgcatattcgccaattcttgggtgcctaatgatgaccacttccttgaatgca 227
Query: 873 gtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgt 932
| | |||||||| |||||||| |||| |||| |||||| ||||| ||| |||||
Sbjct: 226 tgcttgttttgatcaggtgaaatggcagcactgatttgcttagatgcatcataaatatgg 167
Query: 933 cttacaaatggcattttctttataaaccactc 964
| |||||||||||| ||||| ||||||||
Sbjct: 166 cgaacaaatggcattcgttttatgaaccactc 135
>gb|CX608003.1|CX608003 ANR1_32_C02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_32_C02_A002 3', mRNA sequence
Length = 760
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 813 aatccaaatgcatattcaccaattc 837
||||||||||||||||| |||||||
Sbjct: 174 aatccaaatgcatattcgccaattc 150
>gb|CL161950.1|CL161950 104_353_10806077_114_31828_365 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806077, DNA
sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 814 atccaaatgcatattcacca 833
||||||||||||||||||||
Sbjct: 478 atccaaatgcatattcacca 459
>gb|CL161951.1|CL161951 104_353_10806077_116_31829_365 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806077, DNA
sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 814 atccaaatgcatattcacca 833
||||||||||||||||||||
Sbjct: 685 atccaaatgcatattcacca 704
>gb|CW370097.1|CW370097 fsbb001f044n13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044n13, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 814 atccaaatgcatattcacca 833
||||||||||||||||||||
Sbjct: 636 atccaaatgcatattcacca 655
>gb|BG355405.1|BG355405 EM1_16_A11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 693 atgatctcctcagagttcac 712
||||||||||||||||||||
Sbjct: 577 atgatctcctcagagttcac 558
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 356,697
Number of Sequences: 832831
Number of extensions: 356697
Number of successful extensions: 97564
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97482
Number of HSP's gapped (non-prelim): 61
length of query: 1264
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1244
effective length of database: 474,703,049
effective search space: 590530592956
effective search space used: 590530592956
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)