BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG357146.1|BG357146 OV2_10_D07.b1_A002 Ovary 2 (OV2) Sor... 706 0.0
gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum m... 672 0.0
gb|BI140071.1|BI140071 IP1_49_F05.b1_A002 Immature pannicle... 422 e-116
gb|BI140457.1|BI140457 IP1_49_F05.b2_A002 Immature pannicle... 264 7e-069
gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum met... 258 4e-067
>gb|BG357146.1|BG357146 OV2_10_D07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 706 bits (356), Expect = 0.0
Identities = 421/443 (95%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 451 actttgggttcctgaatttaattggtgttccacgattaccactgccagagaagtagaact 392
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 391 tctgggtagcagcgttctgtagctgtttaagaacgggaacatatgatgcattgagccagg 332
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct: 331 tgaagtcctccaccttttgtatgtccacagtgactcctctgtagtcattcatggcaaacc 272
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 271 acgccttcatcggagcatagttcaagtcatcagtcactaggtgaaaaacaaccttgtcag 212
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 211 ggtgcctcgagtttatagccgtagaattgacaacaactgaaacagcaaggatgttgtctg 152
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 151 agaagacacagaaatgatagaggctgttatcccttagattgctctgcactgatgggctcc 92
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || |||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 91 tgtctgaaaactttctctgaagctcaggacttttgaaccattccatggttaatcggacac 32
Query: 421 caaggcaataaagtccctttggg 443
|||||||||||||||||||||||
Sbjct: 31 caaggcaataaagtccctttggg 9
>gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500694, DNA
sequence
Length = 776
Score = 672 bits (339), Expect = 0.0
Identities = 404/426 (94%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 426 actttgggttcctgaatttaattggtgttccacgattaccactgccagagaagtagaact 367
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 366 tctgggtagcagcgttctgtagctgtttaagaacgggaacatatgatgcattgagccagg 307
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct: 306 tgaagtcctccaccttttgtatgtccacagtgactcctctgtagtcattcatggcaaacc 247
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 246 acgccttcatcggagcatagttcaagtcatcagtcactaggtgaaaaacaaccttgtcag 187
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 186 ggtgcctcgagtttatagccgtagaattgacaacaactgaaacagcaaggatgttgtctg 127
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 126 agaagacacagaaatgatagaggctgttatcccttagattgctctgcactgatgggctcc 67
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 66 tgtctgaaaactttctctgaagctcaggactcttgaaccattccatggttaatcggacaa 7
Query: 421 caaggc 426
||||||
Sbjct: 6 caaggc 1
>gb|BI140071.1|BI140071 IP1_49_F05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 627
Score = 422 bits (213), Expect = e-116
Identities = 254/268 (94%)
Strand = Plus / Minus
Query: 194 agcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcagggtgcctcgagtt 253
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 agcatagttcaagtcatcagtcactaggtgaaaaacaaccttgtcagggtgcctcgagtt 568
Query: 254 tatagccgtagaattaacaacaactgaaacagcaaggatgttgtctgagaagacacaaaa 313
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 567 tatagccgtagaattgacaacaactgaaacagcaaggatgttgtctgagaagacacagaa 508
Query: 314 atgatagaggctgttatccctcagattgctctgcactgctgggctcctatccgaaaactt 373
||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||
Sbjct: 507 atgatagaggctgttatcccttagattgctctgcactgatgggctcctgtctgaaaactt 448
Query: 374 cctctgaagctcgggactcttgaaccantccatggttaaccggacaccaaggcaataaag 433
||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 447 tctctgaagctcaggacttttgaaccattccatggttaatcggacaccaaggcaataaag 388
Query: 434 tccctttgggagctcctcagcagcaatc 461
||||||||||||||||||||| ||||||
Sbjct: 387 tccctttgggagctcctcagctgcaatc 360
Score = 40.1 bits (20), Expect = 0.19
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 493 ctttcgacttctcntctagggac 515
||||||||||||| |||||||||
Sbjct: 328 ctttcgacttctcctctagggac 306
>gb|BI140457.1|BI140457 IP1_49_F05.b2_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 535
Score = 264 bits (133), Expect = 7e-069
Identities = 165/176 (93%)
Strand = Plus / Minus
Query: 286 caaggatgttgtctgagaagacacaaaaatgatagaggctgttatccctcagattgctct 345
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 535 caaggatgttgtctgagaagacacagaaatgatagaggctgttatcccttagattgctct 476
Query: 346 gcactgctgggctcctatccgaaaacttcctctgaagctcgggactcttgaaccantcca 405
|||||| ||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 475 gcactgatgggctcctgtctgaaaactttctctgaagctcaggacttttgaaccattcca 416
Query: 406 tggttaaccggacaccaaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 415 tggttaatcggacaccaaggcaataaagtccctttgggagctcctcagctgcaatc 360
Score = 40.1 bits (20), Expect = 0.19
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 493 ctttcgacttctcntctagggac 515
||||||||||||| |||||||||
Sbjct: 328 ctttcgacttctcctctagggac 306
>gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525284, DNA
sequence
Length = 432
Score = 258 bits (130), Expect = 4e-067
Identities = 148/154 (96%)
Strand = Plus / Plus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 275 actttgggttcctgaatttaattggtgttccacgattaccactgccagagaagtagaact 334
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 335 tctgggtagcagcgttctgtagctgtttaagaacgggaacatatgatgcattgagccagg 394
Query: 121 taaagtcctccaccttttgtatctccacagtgac 154
| |||||||||||||||||||| |||||||||||
Sbjct: 395 tgaagtcctccaccttttgtatgtccacagtgac 428
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,951
Number of Sequences: 832831
Number of extensions: 99951
Number of successful extensions: 26611
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26604
Number of HSP's gapped (non-prelim): 7
length of query: 515
length of database: 491,359,669
effective HSP length: 19
effective length of query: 496
effective length of database: 475,535,880
effective search space: 235865796480
effective search space used: 235865796480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)