BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW249841.1|CW249841 104_711_11223062_116_35044_051 Sorgh... 295 2e-078
gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorgh... 285 2e-075
gb|BZ628758.1|BZ628758 ih62b02.b1 WGS-SbicolorF (DH5a methy... 234 8e-060
gb|BZ628759.1|BZ628759 ih62b02.g1 WGS-SbicolorF (DH5a methy... 234 8e-060
gb|CL177459.1|CL177459 104_384_10893845_116_31916_293 Sorgh... 234 8e-060
gb|CW318949.1|CW318949 104_811_11474228_148_35883_074 Sorgh... 234 8e-060
gb|CN146262.1|CN146262 WOUND1_39_D11.b1_A002 Wounded leaves... 234 8e-060
gb|CD236128.1|CD236128 SS1_32_B09.b1_A012 Salt-stressed see... 226 2e-057
gb|CX612764.1|CX612764 GABR1_4_G09.b1_A002 GA- or brassinol... 226 2e-057
gb|BG241494.1|BG241494 RHIZ2_50_A05.g1_A003 Rhizome2 (RHIZ2... 218 5e-055
gb|BE363001.2|BE363001 DG1_92_G01.g1_A002 Dark Grown 1 (DG1... 218 5e-055
gb|BG101966.1|BG101966 RHIZ2_22_A05.g1_A003 Rhizome2 (RHIZ2... 210 1e-052
gb|BE361254.1|BE361254 DG1_70_D12.g1_A002 Dark Grown 1 (DG1... 192 3e-047
gb|CW180237.1|CW180237 104_594_11160530_148_36631_003 Sorgh... 188 4e-046
gb|BE356814.1|BE356814 DG1_12_D07.g1_A002 Dark Grown 1 (DG1... 188 4e-046
gb|CW184571.1|CW184571 104_600_11165220_116_36688_034 Sorgh... 168 4e-040
gb|CN137489.1|CN137489 OX1_57_D04.g1_A002 Oxidatively-stres... 147 1e-033
gb|CN146340.1|CN146340 WOUND1_39_D11.g1_A002 Wounded leaves... 147 1e-033
gb|CW249842.1|CW249842 104_711_11223062_148_35048_051 Sorgh... 145 6e-033
gb|BE361185.1|BE361185 DG1_70_D12.b1_A002 Dark Grown 1 (DG1... 139 3e-031
gb|BG557655.1|BG557655 EM1_54_G11.g1_A002 Embryo 1 (EM1) So... 139 3e-031
gb|CX612853.1|CX612853 GABR1_4_G09.g1_A002 GA- or brassinol... 139 3e-031
gb|BG103195.1|BG103195 RHIZ2_19_D03.g1_A003 Rhizome2 (RHIZ2... 135 5e-030
gb|BG103368.1|BG103368 RHIZ2_19_D03.b1_A003 Rhizome2 (RHIZ2... 135 5e-030
gb|CW180236.1|CW180236 104_594_11160530_116_36635_003 Sorgh... 125 5e-027
gb|CD430220.1|CD430220 ETH1_17_C09.g1_A002 Ethylene-treated... 123 2e-026
gb|CD462503.1|CD462503 ETH1_38_E02.b1_A002 Ethylene-treated... 115 5e-024
gb|CN137417.1|CN137417 OX1_57_D04.b1_A002 Oxidatively-stres... 115 5e-024
gb|BG559614.1|BG559614 RHIZ2_71_B07.g1_A003 Rhizome2 (RHIZ2... 113 2e-023
gb|AW923175.1|AW923175 DG1_49_A09.g1_A002 Dark Grown 1 (DG1... 111 8e-023
gb|CD430207.1|CD430207 ETH1_17_H03.g1_A002 Ethylene-treated... 107 1e-021
gb|BE353027.1|BE353027 DG1_2_H03.g1_A002 Dark Grown 1 (DG1)... 100 3e-019
gb|CN127149.1|CN127149 RHOH1_21_G07.b1_A002 Acid- and alkal... 76 4e-012
gb|CN127238.1|CN127238 RHOH1_21_G07.g3_A002 Acid- and alkal... 76 4e-012
gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorgh... 74 2e-011
gb|AW282821.1|AW282821 LG1_305_H12.g1_A002 Light Grown 1 (L... 74 2e-011
gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1... 74 2e-011
gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1... 74 2e-011
gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sor... 74 2e-011
gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2... 74 2e-011
gb|BI098677.1|BI098677 IP1_35_E08.g1_A002 Immature pannicle... 74 2e-011
gb|BI099425.1|BI099425 IP1_41_H11.g1_A002 Immature pannicle... 74 2e-011
gb|BI351083.1|BI351083 IP1_69_F01.g1_A002 Immature pannicle... 74 2e-011
gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/c... 74 2e-011
gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated... 74 2e-011
gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-defici... 74 2e-011
gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficie... 74 2e-011
gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum b... 74 2e-011
gb|CN132666.1|CN132666 OX1_7_B07.g1_A002 Oxidatively-stress... 74 2e-011
gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stres... 74 2e-011
gb|CW247562.1|CW247562 104_708_11221843_116_35017_070 Sorgh... 70 3e-010
gb|CW463139.1|CW463139 fsbb001f211j12f0 Sorghum methylation... 70 3e-010
gb|BG466056.1|BG466056 RHIZ2_48_A08.g1_A003 Rhizome2 (RHIZ2... 66 4e-009
gb|BI099415.1|BI099415 IP1_41_G12.g1_A002 Immature pannicle... 66 4e-009
gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkal... 66 4e-009
gb|CN132579.1|CN132579 OX1_7_B07.b1_A002 Oxidatively-stress... 66 4e-009
gb|CX609214.1|CX609214 ANR1_11_G12.b1_A002 Anaerobic roots ... 60 3e-007
gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkal... 58 1e-006
gb|CW463140.1|CW463140 fsbb001f211j12k0 Sorghum methylation... 56 4e-006
gb|CW265397.1|CW265397 104_734_11231853_148_35263_085 Sorgh... 50 2e-004
gb|BG465826.1|BG465826 RHIZ2_45_A09.g1_A003 Rhizome2 (RHIZ2... 50 2e-004
gb|CF432712.1|CF432712 NIT1_18_A03.g1_A002 Nitrogen-deficie... 48 0.001
gb|BE125749.1|BE125749 DG1_55_H11.b1_A002 Dark Grown 1 (DG1... 44 0.015
gb|BE360832.1|BE360832 DG1_67_F09.b2_A002 Dark Grown 1 (DG1... 44 0.015
gb|BE363067.1|BE363067 DG1_9_E08.b1_A002 Dark Grown 1 (DG1)... 44 0.015
gb|BE363151.1|BE363151 DG1_9_E08.g1_A002 Dark Grown 1 (DG1)... 44 0.015
gb|CF433879.1|CF433879 NIT1_30_C03.g1_A002 Nitrogen-deficie... 44 0.015
gb|CF479933.1|CF479933 POL1_62_E11.g1_A002 Pollen Sorghum b... 44 0.015
gb|CN138077.1|CN138077 OX1_61_C04.g1_A002 Oxidatively-stres... 44 0.015
gb|CX609300.1|CX609300 ANR1_11_G12.g1_A002 Anaerobic roots ... 44 0.015
gb|CL154605.1|CL154605 104_340_10781530_116_31470_010 Sorgh... 40 0.23
gb|CL154777.1|CL154777 104_340_10781642_116_31470_122 Sorgh... 40 0.23
gb|CL197586.1|CL197586 104_424_10943840_114_32385_022 Sorgh... 40 0.23
gb|CW091113.1|CW091113 104_451_10997678_116_32541_006 Sorgh... 40 0.23
gb|CW116952.1|CW116952 104_492_11107397_148_34602_017 Sorgh... 40 0.23
gb|CW119176.1|CW119176 104_496_11108622_148_34635_031 Sorgh... 40 0.23
gb|CW251700.1|CW251700 104_714_11224079_116_35068_090 Sorgh... 40 0.23
gb|CW273826.1|CW273826 104_746_11404107_116_35364_008 Sorgh... 40 0.23
gb|CW273827.1|CW273827 104_746_11404107_148_35368_008 Sorgh... 40 0.23
gb|CW439466.1|CW439466 fsbb001f157j23k0 Sorghum methylation... 40 0.23
>gb|CW249841.1|CW249841 104_711_11223062_116_35044_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223062, DNA
sequence
Length = 683
Score = 295 bits (149), Expect = 2e-078
Identities = 257/293 (87%)
Strand = Plus / Plus
Query: 243 atcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atcacacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 282
Query: 303 cgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggt 362
|||| || ||| || || ||| ||||||| || | || ||||||||||| | |||||
Sbjct: 283 cgcgcgggtccgccgagaggcgggcgttgaggtcgcggacggcggcggagatgcggcggt 342
Query: 363 cgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgt 422
|| |||| | ||||||||||| || |||||||| || ||| |||||||||||||||
Sbjct: 343 cgtggtccgacatgggcgcgtcgggcggcagcgccacggtgccgtcccacagcgtgttgt 402
Query: 423 cgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgt 482
|||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 403 cgtacacgacggcgccgccgacgcgcaccaggcggagcagctgctcgtggtaccgcacgt 462
Query: 483 agttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
|||| |||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 463 agttgggcttgtcggcgtcgacgaaggcgaagtcgaacgcgccgtggttggcc 515
>gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111651, DNA
sequence
Length = 594
Score = 285 bits (144), Expect = 2e-075
Identities = 249/284 (87%)
Strand = Plus / Plus
Query: 252 cgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcggggat 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1 cgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcgcgggt 60
Query: 312 cctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcgaggtcgc 371
|| || || ||| ||||||| || | || ||||||||||| | ||||||| ||||
Sbjct: 61 ccgccgagaggcgggcgttgaggtcgcggacggcggcggagatgcggcggtcgtggtccg 120
Query: 372 tgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgtacacga 431
| ||||||||||| || |||||||| || ||| ||||||||||||||||||||||||
Sbjct: 121 acatgggcgcgtcgggcggcagcgccacggtgccgtcccacagcgtgttgtcgtacacga 180
Query: 432 cggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagttaggct 491
||| || ||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 181 cggcgccgccgacgcgcaccaggcggagcagctgctcgtggtaccgcacgtagttgggct 240
Query: 492 tgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
|||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 241 tgtcggcgtcgacgaaggcgaagtcgaacgcgccgtggttggcc 284
>gb|BZ628758.1|BZ628758 ih62b02.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih62b02 5', DNA sequence
Length = 564
Score = 234 bits (118), Expect = 8e-060
Identities = 250/294 (85%)
Strand = Plus / Plus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 113 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 172
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 173 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 232
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 233 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 292
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 293 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 352
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 353 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcc 406
>gb|BZ628759.1|BZ628759 ih62b02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih62b02 5', DNA sequence
Length = 645
Score = 234 bits (118), Expect = 8e-060
Identities = 250/294 (85%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 629 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 570
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 569 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 510
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 509 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 450
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 449 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 390
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 389 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcc 336
>gb|CL177459.1|CL177459 104_384_10893845_116_31916_293 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893845, DNA
sequence
Length = 545
Score = 234 bits (118), Expect = 8e-060
Identities = 250/294 (85%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 301 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 242
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 241 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 182
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 181 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 122
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 121 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 62
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 61 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcc 8
>gb|CW318949.1|CW318949 104_811_11474228_148_35883_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474228, DNA
sequence
Length = 708
Score = 234 bits (118), Expect = 8e-060
Identities = 250/294 (85%)
Strand = Plus / Plus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 172 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 231
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 232 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 291
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 292 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 351
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 352 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 411
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 412 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcc 465
>gb|CN146262.1|CN146262 WOUND1_39_D11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D11_A002 3', mRNA sequence
Length = 713
Score = 234 bits (118), Expect = 8e-060
Identities = 250/294 (85%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 482 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 423
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 422 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 363
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 362 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 303
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 302 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 243
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 242 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcc 189
>gb|CD236128.1|CD236128 SS1_32_B09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_32_B09_A012 3', mRNA sequence
Length = 591
Score = 226 bits (114), Expect = 2e-057
Identities = 249/294 (84%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 364 catcaaacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 305
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 304 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 245
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 244 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 185
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 184 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 125
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 124 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcc 71
>gb|CX612764.1|CX612764 GABR1_4_G09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_G09_A002 3', mRNA sequence
Length = 661
Score = 226 bits (114), Expect = 2e-057
Identities = 249/294 (84%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 372 catcaaacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 313
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 312 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 253
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 252 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 193
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 192 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 133
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 132 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcc 79
>gb|BG241494.1|BG241494 RHIZ2_50_A05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 526
Score = 218 bits (110), Expect = 5e-055
Identities = 248/294 (84%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 372 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 313
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| ||
Sbjct: 312 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccga 253
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 252 tccaggtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttg 193
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 192 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 133
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttggcc 535
||||| |||||||||||||| ||||| ||||||||||| |||||| ||||||||
Sbjct: 132 tagttgggcttgtcggcgtccacgaacgcgaagtcgaacgcgccgtggttggcc 79
>gb|BE363001.2|BE363001 DG1_92_G01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 519
Score = 218 bits (110), Expect = 5e-055
Identities = 236/278 (84%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 222
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 221 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 162
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 161 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 102
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 101 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 42
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaa 519
||||| |||||||||||||||||||| |||||||||||
Sbjct: 41 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaa 4
>gb|BG101966.1|BG101966 RHIZ2_22_A05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 546
Score = 210 bits (106), Expect = 1e-052
Identities = 244/290 (84%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 290 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 231
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| ||
Sbjct: 230 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccga 171
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 170 tccaggtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttg 111
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 110 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 51
Query: 482 tagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggtt 531
||||| |||||||||||||| ||||| ||||||||||| |||||| ||||
Sbjct: 50 tagttgggcttgtcggcgtccacgaacgcgaagtcgaacgcgccgtggtt 1
>gb|BE361254.1|BE361254 DG1_70_D12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 408
Score = 192 bits (97), Expect = 3e-047
Identities = 130/141 (92%)
Strand = Plus / Minus
Query: 395 gccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcaccagg 454
||||| || ||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 408 gccacggtgccgtcccacagcgtgttgtcgtacacgacggcgccgccgacgcgcaccagg 349
Query: 455 cggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcgaag 514
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 348 cggagcagctgctcgtggtaccgcacgtagttgggcttgtcggcgtcgacgaaggcgaag 289
Query: 515 tcgaaggcgccggggttggcc 535
||||| |||||| ||||||||
Sbjct: 288 tcgaacgcgccgtggttggcc 268
>gb|CW180237.1|CW180237 104_594_11160530_148_36631_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160530, DNA
sequence
Length = 742
Score = 188 bits (95), Expect = 4e-046
Identities = 218/259 (84%)
Strand = Plus / Plus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 484 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 543
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 544 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 603
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 604 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 663
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 664 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 723
Query: 482 tagttaggcttgtcggcgt 500
||||| |||||||||||||
Sbjct: 724 tagttgggcttgtcggcgt 742
>gb|BE356814.1|BE356814 DG1_12_D07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 188 bits (95), Expect = 4e-046
Identities = 218/259 (84%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 259 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 200
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 199 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 140
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 139 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 80
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 79 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 20
Query: 482 tagttaggcttgtcggcgt 500
||||| |||||||||||||
Sbjct: 19 tagttgggcttgtcggcgt 1
>gb|CW184571.1|CW184571 104_600_11165220_116_36688_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165220, DNA
sequence
Length = 640
Score = 168 bits (85), Expect = 4e-040
Identities = 205/245 (83%)
Strand = Plus / Plus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 392 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 451
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 452 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 511
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 512 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 571
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacg 481
|| ||||||| | | || || || | |||||| |||||||| |||||||||||||| |||
Sbjct: 572 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 631
Query: 482 tagtt 486
|||||
Sbjct: 632 tagtt 636
>gb|CN137489.1|CN137489 OX1_57_D04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_D04_A002 5', mRNA sequence
Length = 786
Score = 147 bits (74), Expect = 1e-033
Identities = 125/142 (88%)
Strand = Plus / Minus
Query: 394 cgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcaccag 453
|||||| || |||||||||||||||||||| ||||||| | | || || || | ||||||
Sbjct: 709 cgccacggtcccggcccacagcgtgttgtcatacacgatgctcccgcccaccctcaccag 650
Query: 454 gcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcgaa 513
|||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 649 acggagcagctgctcgtggtaccgcacgtagttgggcttgtcggcgtcgacgaacgcgaa 590
Query: 514 gtcgaaggcgccggggttggcc 535
|||||| |||||| ||||||||
Sbjct: 589 gtcgaacgcgccgtggttggcc 568
>gb|CN146340.1|CN146340 WOUND1_39_D11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D11_A002 5', mRNA sequence
Length = 719
Score = 147 bits (74), Expect = 1e-033
Identities = 125/142 (88%)
Strand = Plus / Minus
Query: 394 cgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcaccag 453
|||||| || |||||||||||||||||||| ||||||| | | || || || | ||||||
Sbjct: 711 cgccacggtcccggcccacagcgtgttgtcatacacgatgctcccgcccaccctcaccag 652
Query: 454 gcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcgaa 513
|||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 651 acggagcagctgctcgtggtaccgcacgtagttgggcttgtcggcgtcgacgaacgcgaa 592
Query: 514 gtcgaaggcgccggggttggcc 535
|||||| |||||| ||||||||
Sbjct: 591 gtcgaacgcgccgtggttggcc 570
>gb|CW249842.1|CW249842 104_711_11223062_148_35048_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223062, DNA
sequence
Length = 695
Score = 145 bits (73), Expect = 6e-033
Identities = 90/96 (93%)
Strand = Plus / Minus
Query: 440 ccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcg 499
||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||
Sbjct: 695 ccgacgcgcaccaggcggagcagctgctcgtggtaccgcacgtagttgggctngtcggcg 636
Query: 500 tcgacgaaggcgaagtcgaaggcgccggggttggcc 535
|||||||||||||||||||| |||||| ||||||||
Sbjct: 635 tcgacgaaggcgaagtcgaacgcgccgtggttggcc 600
>gb|BE361185.1|BE361185 DG1_70_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 532
Score = 139 bits (70), Expect = 3e-031
Identities = 85/90 (94%)
Strand = Plus / Minus
Query: 446 cgcaccaggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacg 505
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 532 cgcaccaggcggagcagctgctcgtggtaccgcacgtagttgggcttgtcggcgtcgacg 473
Query: 506 aaggcgaagtcgaaggcgccggggttggcc 535
|||||||||||||| |||||| ||||||||
Sbjct: 472 aaggcgaagtcgaacgcgccgtggttggcc 443
>gb|BG557655.1|BG557655 EM1_54_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 528
Score = 139 bits (70), Expect = 3e-031
Identities = 160/190 (84%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 209 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 150
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 149 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 90
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 89 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 30
Query: 422 tcgtacacga 431
|| |||||||
Sbjct: 29 tcatacacga 20
>gb|CX612853.1|CX612853 GABR1_4_G09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_G09_A002 5', mRNA sequence
Length = 732
Score = 139 bits (70), Expect = 3e-031
Identities = 124/142 (87%)
Strand = Plus / Minus
Query: 394 cgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcaccag 453
|||||| || |||||||||||||||||||| ||||||| | | || || || | ||||||
Sbjct: 725 cgccacggtcccggcccacagcgtgttgtcatacacgatgctcccgcccaccctcaccag 666
Query: 454 gcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcgaa 513
|||||||| |||||||||||||| |||||||| |||| ||||||||||||||| |||||
Sbjct: 665 acggagcagctgctcgtggtaccgcacgtagttgggctagtcggcgtcgacgaacgcgaa 606
Query: 514 gtcgaaggcgccggggttggcc 535
|||||| |||||| ||||||||
Sbjct: 605 gtcgaacgcgccgtggttggcc 584
>gb|BG103195.1|BG103195 RHIZ2_19_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 359
Score = 135 bits (68), Expect = 5e-030
Identities = 188/228 (82%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 228 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 169
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| ||
Sbjct: 168 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccga 109
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 108 tccaggtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttg 49
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcg 469
|| ||||||| | | || || || | |||||| |||||||| ||||||
Sbjct: 48 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcg 1
>gb|BG103368.1|BG103368 RHIZ2_19_D03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 411
Score = 135 bits (68), Expect = 5e-030
Identities = 188/228 (82%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 228 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 169
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| ||
Sbjct: 168 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccga 109
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 108 tccaggtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttg 49
Query: 422 tcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcg 469
|| ||||||| | | || || || | |||||| |||||||| ||||||
Sbjct: 48 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcg 1
>gb|CW180236.1|CW180236 104_594_11160530_116_36635_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160530, DNA
sequence
Length = 688
Score = 125 bits (63), Expect = 5e-027
Identities = 108/123 (87%)
Strand = Plus / Minus
Query: 413 agcgtgttgtcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtgg 472
||||||||||| ||||||| | | || || || | |||||| |||||||| |||||||||
Sbjct: 688 agcgtgttgtcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtgg 629
Query: 473 taccggacgtagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccggggttg 532
||||| |||||||| |||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct: 628 taccgcacgtagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttg 569
Query: 533 gcc 535
|||
Sbjct: 568 gcc 566
>gb|CD430220.1|CD430220 ETH1_17_C09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_C09_A002 5', mRNA sequence
Length = 744
Score = 123 bits (62), Expect = 2e-026
Identities = 116/133 (87%), Gaps = 1/133 (0%)
Strand = Plus / Minus
Query: 404 ccggcccacagcgtgttgtcgtacacgacggtacccccgacgcg-caccaggcggagcag 462
|||||||||||||||||||| ||||||| | | || || || | |||||| ||||||||
Sbjct: 725 ccggcccacagcgtgttgtcatacacgatgctcccgcccacccctcaccagacggagcag 666
Query: 463 ttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcgaagtcgaaggc 522
|||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||| ||
Sbjct: 665 ctgctcgtggtaccgcacgtagttgggctngtcggcgtcgacgaacgcgaagtcgaacgc 606
Query: 523 gccggggttggcc 535
|||| ||||||||
Sbjct: 605 gccgtggttggcc 593
>gb|CD462503.1|CD462503 ETH1_38_E02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_E02_A002 3', mRNA sequence
Length = 552
Score = 115 bits (58), Expect = 5e-024
Identities = 157/190 (82%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
||||| |||| ||||||||||||||||| || ||||||||||||||||||| ||||||||
Sbjct: 210 catcaaacgaggcggcggcagatggtgatgcggtcggcgatggcgagctggaagacctcg 151
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| ||| |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 150 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 91
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || || || | |||||| || ||||||||||||||||||
Sbjct: 90 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 31
Query: 422 tcgtacacga 431
|| |||||||
Sbjct: 30 tcatacacga 21
>gb|CN137417.1|CN137417 OX1_57_D04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_D04_A002 3', mRNA sequence
Length = 531
Score = 115 bits (58), Expect = 5e-024
Identities = 157/190 (82%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 198 catcagacgaggcggcggcagatggtgatgccctcggcgatggcgagctggcaaacctcg 139
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
|| || ||||| | | |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 138 acccgctcatccttaaacagcctgacattgaggtccttgatcgccgccgagaacctccgg 79
Query: 362 tcgaggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttg 421
|| ||||| | | |||| || ||||| | |||||| || ||||||||||||||||||
Sbjct: 78 tccaggtcattcatgggcgtctccgggggcaacgccacggtcccggcccacagcgtgttg 19
Query: 422 tcgtacacga 431
|| |||||||
Sbjct: 18 tcatacacga 9
>gb|BG559614.1|BG559614 RHIZ2_71_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 294
Score = 113 bits (57), Expect = 2e-023
Identities = 147/177 (83%)
Strand = Plus / Minus
Query: 247 gacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 196 gacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcgacgcg 137
Query: 307 gggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcgag 366
||||| ||| |||| ||| ||||| ||| |||| || || |||||||| || || ||
Sbjct: 136 ctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgatccag 77
Query: 367 gtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtc 423
||| | | |||| || || || | |||||| || ||||||||||||||||||||
Sbjct: 76 gtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttgtc 20
>gb|AW923175.1|AW923175 DG1_49_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 111 bits (56), Expect = 8e-023
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 242 catcagacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcg 301
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 179 catcaaacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 120
Query: 302 acgcggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcgg 361
||||| ||||| | | |||| ||| ||||| ||| |||| || || |||||||| |||
Sbjct: 119 acgcgctcatccttaaacagcctgacattgaggtccttgatcgccgccgagaacctccgg 60
Query: 362 tcgaggtc 369
|| |||||
Sbjct: 59 tccaggtc 52
>gb|CD430207.1|CD430207 ETH1_17_H03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_H03_A002 5', mRNA sequence
Length = 681
Score = 107 bits (54), Expect = 1e-021
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 455 cggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcgaag 514
|||||||| |||||||||||||| |||||||| |||| ||||||||||||||| ||||||
Sbjct: 679 cggagcagctgctcgtggtaccgcacgtagttgggctngtcggcgtcgacgaacgcgaag 620
Query: 515 tcgaaggcgccggggttggcc 535
||||| |||||| ||||||||
Sbjct: 619 tcgaacgcgccgtggttggcc 599
>gb|BE353027.1|BE353027 DG1_2_H03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 436
Score = 99.6 bits (50), Expect = 3e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 253 gcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 73 gcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcgacgcg 20
>gb|CN127149.1|CN127149 RHOH1_21_G07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G07_A002 3', mRNA sequence
Length = 819
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcgg 307
|||||||||||||| ||||||||||||| ||| || ||||||||||| ||||||||||
Sbjct: 496 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgg 439
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 301 cttgtcggcgtccacgaagacgaagtcgaa 272
>gb|CN127238.1|CN127238 RHOH1_21_G07.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G07_A002 5', mRNA sequence
Length = 859
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcgg 307
|||||||||||||| ||||||||||||| ||| || ||||||||||| ||||||||||
Sbjct: 844 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgg 787
>gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231851, DNA
sequence
Length = 649
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 158 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 214
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 398 cttgtcggcgtccacgaagacgaagtcgaa 427
>gb|AW282821.1|AW282821 LG1_305_H12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 248 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 192
>gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 342 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 286
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 102 cttgtcggcgtccacgaagacgaagtcgaa 73
>gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 372 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 316
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 132 cttgtcggcgtccacgaagacgaagtcgaa 103
>gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 408 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 352
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 168 cttgtcggcgtccacgaagacgaagtcgaa 139
>gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 449
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 444 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 388
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 204 cttgtcggcgtccacgaagacgaagtcgaa 175
>gb|BI098677.1|BI098677 IP1_35_E08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 414
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 182 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 126
>gb|BI099425.1|BI099425 IP1_41_H11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 229 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 173
>gb|BI351083.1|BI351083 IP1_69_F01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 222 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 166
>gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_F11_A007 3', mRNA sequence
Length = 542
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 295 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 239
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 55 cttgtcggcgtccacgaagacgaagtcgaa 26
>gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_C02_A002 3', mRNA sequence
Length = 604
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 374 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 318
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 134 cttgtcggcgtccacgaagacgaagtcgaa 105
>gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_H04_A002 3', mRNA sequence
Length = 573
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 349 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 293
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 109 cttgtcggcgtccacgaagacgaagtcgaa 80
>gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_G06_A002 3', mRNA sequence
Length = 610
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 379 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 323
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 138 cttgtcggcgtccacgaagacgaagtcgaa 109
>gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_F12_A002 5', mRNA sequence
Length = 649
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 231 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 287
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 471 cttgtcggcgtccacgaagacgaagtcgaa 500
>gb|CN132666.1|CN132666 OX1_7_B07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_B07_A002 5', mRNA sequence
Length = 773
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 745 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 689
>gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_C04_A002 3', mRNA sequence
Length = 716
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcg 306
|||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||
Sbjct: 416 gacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 360
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 490 cttgtcggcgtcgacgaaggcgaagtcgaa 519
|||||||||||| |||||| ||||||||||
Sbjct: 176 cttgtcggcgtccacgaagacgaagtcgaa 147
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 195,057
Number of Sequences: 832831
Number of extensions: 195057
Number of successful extensions: 55552
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55362
Number of HSP's gapped (non-prelim): 173
length of query: 617
length of database: 491,359,669
effective HSP length: 19
effective length of query: 598
effective length of database: 475,535,880
effective search space: 284370456240
effective search space used: 284370456240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)