BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419417.2.5
(733 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW494468.1|CW494468 fsbb001f285m07k0 Sorghum methylation... 268 7e-070
gb|CW041974.1|CW041974 104_275_10506864_115_30285 Sorghum m... 204 8e-051
gb|CW226825.1|CW226825 104_665_11205092_116_37226_080 Sorgh... 204 8e-051
gb|CW373637.1|CW373637 fsbb001f050b24k0 Sorghum methylation... 204 8e-051
gb|CW389479.1|CW389479 fsbb001f074l04f0 Sorghum methylation... 204 8e-051
gb|CW493895.1|CW493895 fsbb001f284o06f0 Sorghum methylation... 204 8e-051
gb|CW498861.1|CW498861 fsbb001f293f01k0 Sorghum methylation... 165 7e-039
gb|CW290725.1|CW290725 104_770_11413169_148_35561_077 Sorgh... 100 3e-019
gb|CW265858.1|CW265858 104_735_11232113_148_35265_073 Sorgh... 88 1e-015
gb|CW421777.1|CW421777 fsbb001f130l22k0 Sorghum methylation... 82 8e-014
gb|CW437333.1|CW437333 fsbb001f154g12f0 Sorghum methylation... 82 8e-014
gb|CW491525.1|CW491525 fsbb001f281g21f0 Sorghum methylation... 82 8e-014
gb|CW437080.1|CW437080 fsbb001f154a08f0 Sorghum methylation... 74 2e-011
gb|CW123119.1|CW123119 104_502_11111040_116_34690_092 Sorgh... 56 5e-006
gb|CW081454.1|CW081454 104_419_10941845_116_32296_023 Sorgh... 48 0.001
gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorgh... 48 0.001
gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorgh... 48 0.001
gb|CW190500.1|CW190500 104_612_11174536_148_36759_062 Sorgh... 48 0.001
gb|CW210000.1|CW210000 104_640_11189560_116_37000_060 Sorgh... 48 0.001
gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation... 48 0.001
gb|CW457729.1|CW457729 fsbb001f203k19f0 Sorghum methylation... 48 0.001
gb|CW457730.1|CW457730 fsbb001f203k19k0 Sorghum methylation... 48 0.001
gb|CW472326.1|CW472326 fsbb001f227d11f0 Sorghum methylation... 48 0.001
gb|AW284341.2|AW284341 LG1_275_C12.g1_A002 Light Grown 1 (L... 48 0.001
gb|AW286529.2|AW286529 LG1_334_A07.g1_A002 Light Grown 1 (L... 48 0.001
gb|AW676919.1|AW676919 DG1_2_E11.b1_A002 Dark Grown 1 (DG1)... 48 0.001
gb|AW677220.1|AW677220 DG1_6_D11.g1_A002 Dark Grown 1 (DG1)... 48 0.001
gb|AW744827.1|AW744827 LG1_384_D09.g1_A002 Light Grown 1 (L... 48 0.001
gb|AW922651.1|AW922651 DG1_20_B09.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|AW923243.1|AW923243 DG1_50_B11.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|AW923628.1|AW923628 DG1_56_E12.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE356472.1|BE356472 DG1_125_D03.g1_A002 Dark Grown 1 (DG... 48 0.001
gb|BE356746.1|BE356746 DG1_12_B04.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE357387.1|BE357387 DG1_15_B06.b2_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE358119.1|BE358119 DG1_24_H05.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE358884.1|BE358884 DG1_32_G02.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE359233.1|BE359233 DG1_39_G12.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE359750.1|BE359750 DG1_56_E12.g2_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE360002.1|BE360002 DG1_60_H01.g2_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE360562.1|BE360562 DG1_64_C07.b1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE361214.1|BE361214 DG1_70_H03.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE361473.1|BE361473 DG1_72_G02.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BG464390.1|BG464390 EM1_69_B10.g1_A002 Embryo 1 (EM1) So... 48 0.001
gb|BG557199.1|BG557199 EM1_43_H09.g1_A002 Embryo 1 (EM1) So... 48 0.001
gb|BG557200.1|BG557200 EM1_43_H10.g1_A002 Embryo 1 (EM1) So... 48 0.001
gb|CD461465.1|CD461465 SA1_32_D07.b1_A002 Salicylic acid-tr... 48 0.001
gb|CF430559.1|CF430559 NIT1_3_G08.b1_A002 Nitrogen-deficien... 48 0.001
gb|CF433098.1|CF433098 NIT1_25_G09.b1_A002 Nitrogen-deficie... 48 0.001
gb|CN128121.1|CN128121 RHOH1_27_D08.b1_A002 Acid- and alkal... 48 0.001
gb|CX614275.1|CX614275 GABR1_13_C10.b1_A002 GA- or brassino... 48 0.001
gb|CX614453.1|CX614453 GABR1_14_E02.b1_A002 GA- or brassino... 48 0.001
gb|CX615129.1|CX615129 GABR1_18_G09.b1_A002 GA- or brassino... 48 0.001
gb|CX615723.1|CX615723 GABR1_22_F02.b1_A002 GA- or brassino... 48 0.001
gb|CX616148.1|CX616148 GABR1_26_D10.b1_A002 GA- or brassino... 48 0.001
gb|CX620938.1|CX620938 GABR1_55_B01.b1_A002 GA- or brassino... 48 0.001
gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nucle... 48 0.001
gb|CW077452.1|CW077452 104_381_10892527_116_31765_127 Sorgh... 46 0.005
gb|CW077453.1|CW077453 104_381_10892527_148_31764_127 Sorgh... 46 0.005
gb|CW112744.1|CW112744 104_486_11105051_116_34545_036 Sorgh... 46 0.005
gb|CW112745.1|CW112745 104_486_11105051_148_34541_036 Sorgh... 46 0.005
gb|CW128496.1|CW128496 104_510_11114036_148_34753_078 Sorgh... 46 0.005
gb|CW164626.1|CW164626 104_572_11152084_148_36463_004 Sorgh... 46 0.005
gb|BG559169.1|BG559169 RHIZ2_55_E04.g1_A003 Rhizome2 (RHIZ2... 46 0.005
gb|CN147921.1|CN147921 WOUND1_53_C12.b1_A002 Wounded leaves... 46 0.005
gb|BZ628246.1|BZ628246 ih58g10.g1 WGS-SbicolorF (DH5a methy... 44 0.018
gb|CW029341.1|CW029341 104_256_10499619_114_30399 Sorghum m... 44 0.018
gb|CW038580.1|CW038580 104_270_10505004_115_30386 Sorghum m... 44 0.018
gb|CW110613.1|CW110613 104_483_11103812_148_34522_072 Sorgh... 44 0.018
gb|CW165207.1|CW165207 104_573_11152383_148_36473_056 Sorgh... 44 0.018
gb|CW274641.1|CW274641 104_747_11404533_116_35374_085 Sorgh... 44 0.018
gb|CW299705.1|CW299705 104_782_11463260_148_35687_068 Sorgh... 44 0.018
gb|CW458790.1|CW458790 fsbb001f205d22f0 Sorghum methylation... 44 0.018
gb|BG049317.1|BG049317 OV1_18_D10.g1_A002 Ovary 1 (OV1) Sor... 44 0.018
gb|BG932995.1|BG932995 DG1_69_H05.g1_A002 Dark Grown 1 (DG1... 44 0.018
gb|CD231994.1|CD231994 SS1_31_E11.b1_A012 Salt-stressed see... 44 0.018
gb|CD233911.1|CD233911 SS1_5_B11.b1_A012 Salt-stressed seed... 44 0.018
gb|CN123998.1|CN123998 RHOH1_2_A09.b1_A002 Acid- and alkali... 44 0.018
gb|CN127628.1|CN127628 RHOH1_24_C12.b1_A002 Acid- and alkal... 44 0.018
gb|CN129227.1|CN129227 RHOH1_34_E11.b3_A002 Acid- and alkal... 44 0.018
gb|BZ337449.1|BZ337449 ia87h03.g1 WGS-SbicolorF (JM107 adap... 42 0.071
gb|CD212567.1|CD212567 HS1_6_E05.b1_A012 Heat-shocked seedl... 42 0.071
gb|CW498860.1|CW498860 fsbb001f293f01f0 Sorghum methylation... 40 0.28
gb|BE358178.1|BE358178 DG1_24_A06.g1_A002 Dark Grown 1 (DG1... 40 0.28
gb|BF422097.1|BF422097 FM1_12_H01.g1_A003 Floral-Induced Me... 40 0.28
gb|BF586059.1|BF586059 FM1_26_B07.g1_A003 Floral-Induced Me... 40 0.28
gb|CN124461.1|CN124461 RHOH1_5_A02.b1_A002 Acid- and alkali... 40 0.28
>gb|CW494468.1|CW494468 fsbb001f285m07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285m07, DNA
sequence
Length = 598
Score = 268 bits (135), Expect = 7e-070
Identities = 171/183 (93%)
Strand = Plus / Plus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 293 ggaggacgggtgcgatgtgcgtgggtatttcgcgtggtcgctgctggacaactgggaatg 352
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| |||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 353 ggcggccgggtacagttcgagatttgggctctacttcgtggactacaaggataatctcaa 412
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctgagctccagctgaaggcg 357
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 413 gaggtaccccaagaactcggtgcagtggttcaaaaccctgctgagctccagctgaaggcg 472
Query: 358 tca 360
|||
Sbjct: 473 tca 475
Score = 165 bits (83), Expect = 7e-039
Identities = 104/111 (93%)
Strand = Plus / Plus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct: 53 gggatggacgacggcaacagccctttcacttccatccaggacgcgctcaaggacaaaaag 112
Query: 128 aggatcaagtaccacaacggctacctcaacaacgttgctgcctccataaag 178
|| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 113 agaatcaagtaccacaacgactacctcagcaacgttgctgcctccataaag 163
>gb|CW041974.1|CW041974 104_275_10506864_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506864, DNA
sequence
Length = 631
Score = 204 bits (103), Expect = 8e-051
Identities = 160/179 (89%)
Strand = Plus / Plus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 270 ggaggatgggtgcgacgtgcgtggctacttcgcgtggtcgctgctggacaactgggagtg 329
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
| | ||||| ||| | ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 330 gacggccggctactcatccagattcgggctctacttcgtggactacaaggacagcctcaa 389
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctgagctccagctgaaggc 356
||| |||||||||| |||||| ||||||||||||| |||| | ||||| ||||||||||
Sbjct: 390 gagataccccaagagctcggtgcagtggttcaagaacctgttaagctctagctgaaggc 448
Score = 157 bits (79), Expect = 2e-036
Identities = 103/111 (92%)
Strand = Plus / Plus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 77 gggatggatgacggcaacagccctttcacttccatcaaggacgcgctcaaggacagcaag 136
Query: 128 aggatcaagtaccacaacggctacctcaacaacgttgctgcctccataaag 178
||||||||||||||||||| |||||||| |||| | |||||||||||||||
Sbjct: 137 aggatcaagtaccacaacgactacctcaccaacctggctgcctccataaag 187
>gb|CW226825.1|CW226825 104_665_11205092_116_37226_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205092, DNA
sequence
Length = 686
Score = 204 bits (103), Expect = 8e-051
Identities = 160/179 (89%)
Strand = Plus / Plus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 394 ggaggatgggtgcgacgtgcgtggctacttcgcgtggtcgctgctggacaactgggagtg 453
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
| | ||||| ||| | ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 454 gacggccggctactcatccagattcgggctctacttcgtggactacaaggacagcctcaa 513
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctgagctccagctgaaggc 356
||| |||||||||| |||||| ||||||||||||| |||| | ||||| ||||||||||
Sbjct: 514 gagataccccaagagctcggtgcagtggttcaagaacctgttaagctctagctgaaggc 572
Score = 157 bits (79), Expect = 2e-036
Identities = 103/111 (92%)
Strand = Plus / Plus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 201 gggatggatgacggcaacagccctttcacttccatcaaggacgcgctcaaggacagcaag 260
Query: 128 aggatcaagtaccacaacggctacctcaacaacgttgctgcctccataaag 178
||||||||||||||||||| |||||||| |||| | |||||||||||||||
Sbjct: 261 aggatcaagtaccacaacgactacctcaccaacctggctgcctccataaag 311
Score = 56.0 bits (28), Expect = 5e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
||||||||||| |||||||| ||||||| |||||| | ||||||||||| |||||
Sbjct: 38 ctgatgaactacgtcaaggaaaggtacaacagcccaccagtttacatcacggaaaa 93
>gb|CW373637.1|CW373637 fsbb001f050b24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f050b24, DNA
sequence
Length = 565
Score = 204 bits (103), Expect = 8e-051
Identities = 160/179 (89%)
Strand = Plus / Plus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 30 ggaggatgggtgcgacgtgcgtggctacttcgcgtggtcgctgctggacaactgggagtg 89
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
| | ||||| ||| | ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 90 gacggccggctactcatccagattcgggctctacttcgtggactacaaggacagcctcaa 149
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctgagctccagctgaaggc 356
||| |||||||||| |||||| ||||||||||||| |||| | ||||| ||||||||||
Sbjct: 150 gagataccccaagagctcggtgcagtggttcaagaacctgttaagctctagctgaaggc 208
>gb|CW389479.1|CW389479 fsbb001f074l04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f074l04, DNA
sequence
Length = 674
Score = 204 bits (103), Expect = 8e-051
Identities = 160/179 (89%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 528 ggaggatgggtgcgacgtgcgtggctacttcgcgtggtcgctgctggacaactgggagtg 469
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
| | ||||| ||| | ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 468 gacggccggctactcatccagattcgggctctacttcgtggactacaaggacagcctcaa 409
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctgagctccagctgaaggc 356
||| |||||||||| |||||| ||||||||||||| |||| | ||||| ||||||||||
Sbjct: 408 gagataccccaagagctcggtgcagtggttcaagaacctgttaagctctagctgaaggc 350
Score = 71.9 bits (36), Expect = 8e-011
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 123 gcaagaggatcaagtaccacaacggctacctcaacaacgttgctgcctccataaag 178
||||||||||||||||||||| || |||||||| |||| | |||||||||||||||
Sbjct: 666 gcaagaggatcaagtaccacatcgactacctcaccaacttggctgcctccataaag 611
>gb|CW493895.1|CW493895 fsbb001f284o06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284o06, DNA
sequence
Length = 812
Score = 204 bits (103), Expect = 8e-051
Identities = 160/179 (89%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 542 ggaggatgggtgcgacgtgcgtggctacttcgcgtggtcgctgctggacaactgggagtg 483
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
| | ||||| ||| | ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 482 gacggccggctactcatccagattcgggctctacttcgtggactacaaggacagcctcaa 423
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctgagctccagctgaaggc 356
||| |||||||||| |||||| ||||||||||||| |||| | ||||| ||||||||||
Sbjct: 422 gagataccccaagagctcggtgcagtggttcaagaacctgttaagctctagctgaaggc 364
Score = 157 bits (79), Expect = 2e-036
Identities = 103/111 (92%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 735 gggatggatgacggcaacagccctttcacttccatcaaggacgcgctcaaggacagcaag 676
Query: 128 aggatcaagtaccacaacggctacctcaacaacgttgctgcctccataaag 178
||||||||||||||||||| |||||||| |||| | |||||||||||||||
Sbjct: 675 aggatcaagtaccacaacgactacctcaccaacctggctgcctccataaag 625
>gb|CW498861.1|CW498861 fsbb001f293f01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293f01, DNA
sequence
Length = 626
Score = 165 bits (83), Expect = 7e-039
Identities = 104/111 (93%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct: 362 gggatggacgacggcaacagccctttcacttccatccaggacgcgctcaaggacaaaaag 303
Query: 128 aggatcaagtaccacaacggctacctcaacaacgttgctgcctccataaag 178
|| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 302 agaatcaagtaccacaacgactacctcagcaacgttgctgcctccataaag 252
Score = 163 bits (82), Expect = 3e-038
Identities = 112/122 (91%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 122 ggaggacgggtgcgatgtgcgtgggtatttcgcgtggtcgctgctggacaactgggaatg 63
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| |||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 62 ggcggccgggtacagttcgagatttgggctctacttcgtggactacaaggataatctcaa 3
Query: 298 ga 299
||
Sbjct: 2 ga 1
Score = 93.7 bits (47), Expect = 2e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 8 aagctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 519 aagctgatgaactatgtcaaggagaggtacaatagcccgacggtttacatcaccgaaaa 461
>gb|CW290725.1|CW290725 104_770_11413169_148_35561_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413169, DNA
sequence
Length = 305
Score = 99.6 bits (50), Expect = 3e-019
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct: 236 gggatggacgacggcaacagccctttcacttccatccaggacgcgctcaaggacaaaaag 295
Query: 128 aggatcaagt 137
|| |||||||
Sbjct: 296 agaatcaagt 305
Score = 93.7 bits (47), Expect = 2e-017
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 8 aagctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 79 aagctgatgaactatgtcaaggagaggtacaatagcccgacggtttacatcaccgaaaa 137
>gb|CW265858.1|CW265858 104_735_11232113_148_35265_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232113, DNA
sequence
Length = 101
Score = 87.7 bits (44), Expect = 1e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 254 tccagattcgggctctacttcgtggactacaaggataacctcaagaggtaccccaagaac 313
|||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||| |
Sbjct: 101 tccagattcgggatctacttcgtggactacaaggacagcctcaagagataccccaagacc 42
Query: 314 tcgg 317
||||
Sbjct: 41 tcgg 38
>gb|CW421777.1|CW421777 fsbb001f130l22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f130l22, DNA
sequence
Length = 648
Score = 81.8 bits (41), Expect = 8e-014
Identities = 98/117 (83%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| ||| |||| || ||||| || ||||||||| | ||||| |||||||||
Sbjct: 211 gacaactgggagtggaccgctggatacacgtcgagattcgggttgtactttgtggactac 270
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaagaccctgctg 340
|| | || |||||||| ||||| |||||||| || | ||||||||||| |||||||
Sbjct: 271 aacaacaatctcaagagatacccaaagaactcagtgctgtggttcaagaacctgctg 327
>gb|CW437333.1|CW437333 fsbb001f154g12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f154g12, DNA
sequence
Length = 698
Score = 81.8 bits (41), Expect = 8e-014
Identities = 98/117 (83%)
Strand = Plus / Minus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| ||| |||| || ||||| || ||||||||| | ||||| |||||||||
Sbjct: 468 gacaactgggagtggaccgctggatacacgtcgagattcgggttgtactttgtggactac 409
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaagaccctgctg 340
|| | || |||||||| ||||| |||||||| || | ||||||||||| |||||||
Sbjct: 408 aacaacaatctcaagagatacccaaagaactcagtgctgtggttcaagaacctgctg 352
>gb|CW491525.1|CW491525 fsbb001f281g21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281g21, DNA
sequence
Length = 648
Score = 81.8 bits (41), Expect = 8e-014
Identities = 98/117 (83%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| ||| |||| || ||||| || ||||||||| | ||||| |||||||||
Sbjct: 73 gacaactgggagtggaccgctggatacacgtcgagattcgggttgtactttgtggactac 132
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaagaccctgctg 340
|| | || |||||||| ||||| |||||||| || | ||||||||||| |||||||
Sbjct: 133 aacaacaatctcaagagatacccaaagaactcagtgctgtggttcaagaacctgctg 189
>gb|CW437080.1|CW437080 fsbb001f154a08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f154a08, DNA
sequence
Length = 667
Score = 73.8 bits (37), Expect = 2e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| ||| |||| || ||||| || ||||||||| | ||||| |||||||||
Sbjct: 467 gacaactgggagtggaccgctggatacacgtcgagattcgggttgtactttgtggactac 408
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaagaccctgctg 340
|| | || ||||||| ||||| |||||||| || | ||||||||||| |||||||
Sbjct: 407 aacaacaatatcaagagatacccaaagaactcagtgctgtggttcaagaacctgctg 351
>gb|CW123119.1|CW123119 104_502_11111040_116_34690_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111040, DNA
sequence
Length = 587
Score = 56.0 bits (28), Expect = 5e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
||||||||||| |||||||| ||||||| |||||| | ||||||||||| |||||
Sbjct: 151 ctgatgaactacgtcaaggaaaggtacaacagcccaccagtttacatcacggaaaa 96
>gb|CW081454.1|CW081454 104_419_10941845_116_32296_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941845, DNA
sequence
Length = 693
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 188 gacgtgcgcggctacttcgcgtggtctctgctggacaact 227
>gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137466, DNA
sequence
Length = 599
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 203 tacttcgcgtggtcgttgctggacaact 230
||||||||||||||| ||||||||||||
Sbjct: 514 tacttcgcgtggtcgctgctggacaact 541
>gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137466, DNA
sequence
Length = 694
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 203 tacttcgcgtggtcgttgctggacaact 230
||||||||||||||| ||||||||||||
Sbjct: 521 tacttcgcgtggtcgctgctggacaact 494
>gb|CW190500.1|CW190500 104_612_11174536_148_36759_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174536, DNA
sequence
Length = 596
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 439 gacgtgcgcggctacttcgcgtggtctctgctggacaact 478
>gb|CW210000.1|CW210000 104_640_11189560_116_37000_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189560, DNA
sequence
Length = 665
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 636 gacgtgcgcggctacttcgcgtggtctctgctggacaact 597
>gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077d18, DNA
sequence
Length = 682
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 203 tacttcgcgtggtcgttgctggacaact 230
||||||||||||||| ||||||||||||
Sbjct: 380 tacttcgcgtggtcgctgctggacaact 407
>gb|CW457729.1|CW457729 fsbb001f203k19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203k19, DNA
sequence
Length = 722
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 663 gacgtgcgcggctacttcgcgtggtctctgctggacaact 624
>gb|CW457730.1|CW457730 fsbb001f203k19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203k19, DNA
sequence
Length = 751
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 501 gacgtgcgcggctacttcgcgtggtctctgctggacaact 540
>gb|CW472326.1|CW472326 fsbb001f227d11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227d11, DNA
sequence
Length = 449
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 324 gacgtgcgcggctacttcgcgtggtctctgctggacaact 285
>gb|AW284341.2|AW284341 LG1_275_C12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 178
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 25 gacgtgcgcggctacttcgcgtggtctctgctggacaact 64
>gb|AW286529.2|AW286529 LG1_334_A07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 415
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 63 gacgtgcgcggctacttcgcgtggtctctgctggacaact 102
>gb|AW676919.1|AW676919 DG1_2_E11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 459
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 418 gacgtgcgcggctacttcgcgtggtctctgctggacaact 457
>gb|AW677220.1|AW677220 DG1_6_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 497
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 64 gacgtgcgcggctacttcgcgtggtctctgctggacaact 103
>gb|AW744827.1|AW744827 LG1_384_D09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 449
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 28 gacgtgcgcggctacttcgcgtggtctctgctggacaact 67
>gb|AW922651.1|AW922651 DG1_20_B09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 459
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 47 gacgtgcgcggctacttcgcgtggtctctgctggacaact 86
>gb|AW923243.1|AW923243 DG1_50_B11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 589
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 179 gacgtgcgcggctacttcgcgtggtctctgctggacaact 218
>gb|AW923628.1|AW923628 DG1_56_E12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 66 gacgtgcgcggctacttcgcgtggtctctgctggacaact 105
>gb|BE356472.1|BE356472 DG1_125_D03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 457
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 102 gacgtgcgcggctacttcgcgtggtctctgctggacaact 141
>gb|BE356746.1|BE356746 DG1_12_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 294 gacgtgcgcggctacttcgcgtggtctctgctggacaact 333
>gb|BE357387.1|BE357387 DG1_15_B06.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 601
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 477 gacgtgcgcggctacttcgcgtggtctctgctggacaact 516
>gb|BE358119.1|BE358119 DG1_24_H05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 685
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 319 gacgtgcgcggctacttcgcgtggtctctgctggacaact 358
>gb|BE358884.1|BE358884 DG1_32_G02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 640
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 322 gacgtgcgcggctacttcgcgtggtctctgctggacaact 361
>gb|BE359233.1|BE359233 DG1_39_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 596
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 184 gacgtgcgcggctacttcgcgtggtctctgctggacaact 223
>gb|BE359750.1|BE359750 DG1_56_E12.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 285
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 64 gacgtgcgcggctacttcgcgtggtctctgctggacaact 103
>gb|BE360002.1|BE360002 DG1_60_H01.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 623
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 222 gacgtgcgcggctacttcgcgtggtctctgctggacaact 261
>gb|BE360562.1|BE360562 DG1_64_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 563
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 382 gacgtgcgcggctacttcgcgtggtctctgctggacaact 343
>gb|BE361214.1|BE361214 DG1_70_H03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 596
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 166 gacgtgcgcggctacttcgcgtggtctctgctggacaact 205
>gb|BE361473.1|BE361473 DG1_72_G02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 690
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 249 gacgtgcgcggctacttcgcgtggtctctgctggacaact 288
>gb|BG464390.1|BG464390 EM1_69_B10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 562
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 297 gacgtgcgcggctacttcgcgtggtctctgctggacaact 336
>gb|BG557199.1|BG557199 EM1_43_H09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 136 gacgtgcgcggctacttcgcgtggtctctgctggacaact 175
>gb|BG557200.1|BG557200 EM1_43_H10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 109 gacgtgcgcggctacttcgcgtggtctctgctggacaact 148
>gb|CD461465.1|CD461465 SA1_32_D07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_32_D07_A002 3', mRNA sequence
Length = 597
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 181 gacgtgcgcggctacttcgcgtggtctctgctggacaact 220
>gb|CF430559.1|CF430559 NIT1_3_G08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_3_G08_A002 3', mRNA sequence
Length = 588
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 167 gacgtgcgcggctacttcgcgtggtctctgctggacaact 206
>gb|CF433098.1|CF433098 NIT1_25_G09.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_25_G09_A002 3', mRNA sequence
Length = 691
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 267 gacgtgcgcggctacttcgcgtggtctctgctggacaact 306
>gb|CN128121.1|CN128121 RHOH1_27_D08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_D08_A002 3', mRNA sequence
Length = 840
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 420 gacgtgcgcggctacttcgcgtggtctctgctggacaact 459
>gb|CX614275.1|CX614275 GABR1_13_C10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_13_C10_A002 3', mRNA sequence
Length = 732
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||| || |||||||||||||| ||||||||||||
Sbjct: 312 gacgtgcgcggctacttcgcgtggtctctgctggacaact 351
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 175,077
Number of Sequences: 832831
Number of extensions: 175077
Number of successful extensions: 51882
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51743
Number of HSP's gapped (non-prelim): 138
length of query: 733
length of database: 491,359,669
effective HSP length: 20
effective length of query: 713
effective length of database: 474,703,049
effective search space: 338463273937
effective search space used: 338463273937
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)