BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419390.2.1
(1603 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG356900.1|BG356900 OV2_11_D08.g1_A002 Ovary 2 (OV2) Sor... 640 0.0
gb|BF587835.1|BF587835 FM1_33_G06.g1_A003 Floral-Induced Me... 622 e-176
gb|BG240756.1|BG240756 OV1_37_H04.g1_A002 Ovary 1 (OV1) Sor... 507 e-142
gb|CW135162.1|CW135162 104_519_11117699_116_34830_038 Sorgh... 311 1e-082
gb|CW135163.1|CW135163 104_519_11117699_148_34826_038 Sorgh... 311 1e-082
gb|CW413938.1|CW413938 fsbb001f113f13k0 Sorghum methylation... 311 1e-082
gb|CW458016.1|CW458016 fsbb001f204b14f0 Sorghum methylation... 311 1e-082
gb|CW177944.1|CW177944 104_591_11159301_116_36607_087 Sorgh... 228 1e-057
gb|CW458017.1|CW458017 fsbb001f204b14k0 Sorghum methylation... 226 5e-057
gb|BZ348728.1|BZ348728 hp60e11.g2 WGS-SbicolorF (JM107 adap... 218 1e-054
gb|CW177945.1|CW177945 104_591_11159301_148_36608_087 Sorgh... 216 5e-054
gb|CW228616.1|CW228616 104_668_11206476_148_37249_038 Sorgh... 182 7e-044
gb|CW086376.1|CW086376 104_430_10946936_116_33018_028 Sorgh... 161 2e-037
gb|CW291515.1|CW291515 104_771_11413593_148_35573_043 Sorgh... 161 2e-037
gb|CW086375.1|CW086375 104_430_10946936_114_33015_028 Sorgh... 159 1e-036
gb|CW155872.1|CW155872 104_558_11146371_116_36363_006 Sorgh... 159 1e-036
gb|CW155873.1|CW155873 104_558_11146371_148_36364_006 Sorgh... 159 1e-036
gb|CW291514.1|CW291514 104_771_11413593_116_35569_043 Sorgh... 159 1e-036
gb|BF587229.1|BF587229 FM1_33_G06.b2_A003 Floral-Induced Me... 135 1e-029
gb|CW228615.1|CW228615 104_668_11206476_116_37250_038 Sorgh... 70 7e-010
gb|CW314382.1|CW314382 104_805_11471800_116_35818_064 Sorgh... 44 0.040
gb|CL197375.1|CL197375 104_424_10943704_114_32385_060 Sorgh... 42 0.16
gb|CL197376.1|CL197376 104_424_10943704_116_32340_060 Sorgh... 42 0.16
gb|CW082431.1|CW082431 104_424_10943704_114_32336_060 Sorgh... 42 0.16
gb|DV162814.1|DV162814 P1-N10 Sorghum bicolor greenbug-resp... 42 0.16
>gb|BG356900.1|BG356900 OV2_11_D08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 640 bits (323), Expect = 0.0
Identities = 429/463 (92%), Gaps = 1/463 (0%)
Strand = Plus / Minus
Query: 490 caagcaagtacttggactcagctgcgaagt-cgaccggtgcttcacccctcacggtgatt 548
|||||| ||||||||| |||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 463 caagcaggtacttggattcagctgcatagttcgaccggtgcttcactcctcacggtgatc 404
Query: 549 ctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcggaacaggtgagga 608
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 403 ctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgagga 344
Query: 609 acccaggtggcttccttgagcttgagaacgtagctgtcgtccccctcctctttcctgatc 668
|||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||
Sbjct: 343 acccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcctctttcctgatc 284
Query: 669 cgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctcgttgaacacggac 728
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 283 cgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgctcgttgaacacggac 224
Query: 729 acccaagcctcaccagtgggatcggagagcttgatcaccatgatgtatctcagcgagcac 788
||||| ||||||||||||||||| |||| ||||| ||||| ||||||||||| |||||
Sbjct: 223 acccatgcctcaccagtgggatcagagatcttgaggaccattatgtatctcagtgagcat 164
Query: 789 tcagagtcattcttttggcacccctcgcaccagtatccagacccaaaagcttcagtcacc 848
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct: 163 tcagagtcgttcttttggcatccctcacaccagtatccagatccaaaagcttcagtcacc 104
Query: 849 ttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggcttgatgtggctt 908
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 103 ttcttgttgcaggtcttgcaagcacggtaccacatattctggtcaggcttgatgtggctt 44
Query: 909 atgatggcatacagactgaagaaaacaggcttttcctggccca 951
|||||||||| | |||||||||||||||||||||||||||||
Sbjct: 43 atgatggcatttaaactgaagaaaacaggcttttcctggccca 1
>gb|BF587835.1|BF587835 FM1_33_G06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 607
Score = 622 bits (314), Expect = e-176
Identities = 404/434 (93%)
Strand = Plus / Minus
Query: 429 tccttcaagaaccaccagaaagactgcgtcttctagcaagcggtgagcttcgcgatctct 488
||||||| ||||||||||||||| ||| ||||||||||||| || |||||||||||||||
Sbjct: 434 tccttcacgaaccaccagaaagattgcatcttctagcaagcagtaagcttcgcgatctct 375
Query: 489 tcaagcaagtacttggactcagctgcgaagtcgaccggtgcttcacccctcacggtgatt 548
||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 374 tcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtgatc 315
Query: 549 ctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcggaacaggtgagga 608
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 314 ctctgccttttctcgttcatgtattcatgctgtgtgacgctgacgcggaaaaggtgagga 255
Query: 609 acccaggtggcttccttgagcttgagaacgtagctgtcgtccccctcctctttcctgatc 668
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 254 acccaggtggcttccttgagcttgagaacgtaactgtcatcgccctcctctttcctgatc 195
Query: 669 cgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctcgttgaacacggac 728
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 194 cgatcaagctcgtcagcgctgcagccaatgatcttctcggcatgctcgttgaacacggac 135
Query: 729 acccaagcctcaccagtgggatcggagagcttgatcaccatgatgtatctcagcgagcac 788
||||| ||||||||||||||||| |||| ||||| ||||||||||||||||| |||||
Sbjct: 134 acccatgcctcaccagtgggatcagagatcttgaggaccatgatgtatctcagtgagcat 75
Query: 789 tcagagtcattcttttggcacccctcgcaccagtatccagacccaaaagcttcagtcacc 848
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct: 74 tcagagtcgttcttttggcatccctcacaccagtatccagatccaaaagcttcagtcacc 15
Query: 849 ttcttgttacaggt 862
|||||||| |||||
Sbjct: 14 ttcttgttgcaggt 1
Score = 73.8 bits (37), Expect = 4e-011
Identities = 73/83 (87%), Gaps = 4/83 (4%)
Strand = Plus / Minus
Query: 315 agcatctacatataccttacagaagtgctaaaacccagtgagagcaacacacagaacagt 374
||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 546 agcatctacatat--cttacagaagtgctaaagaccaatgagagca--acacagaacagt 491
Query: 375 aatcaagttactggagctcaaaa 397
||| |||||||| |||||||||
Sbjct: 490 aataaagttactacagctcaaaa 468
>gb|BG240756.1|BG240756 OV1_37_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 507 bits (256), Expect = e-142
Identities = 340/368 (92%)
Strand = Plus / Minus
Query: 429 tccttcaagaaccaccagaaagactgcgtcttctagcaagcggtgagcttcgcgatctct 488
||||||| ||||||||||||||| ||| ||||||||||||| || |||||||||||||||
Sbjct: 370 tccttcacgaaccaccagaaagattgcatcttctagcaagcagtaagcttcgcgatctct 311
Query: 489 tcaagcaagtacttggactcagctgcgaagtcgaccggtgcttcacccctcacggtgatt 548
||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 310 tcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtgatc 251
Query: 549 ctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcggaacaggtgagga 608
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 250 ctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgagga 191
Query: 609 acccaggtggcttccttgagcttgagaacgtagctgtcgtccccctcctctttcctgatc 668
|||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||
Sbjct: 190 acccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcctctttcctgatc 131
Query: 669 cgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctcgttgaacacggac 728
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 130 cgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgctcgttgaacacggac 71
Query: 729 acccaagcctcaccagtgggatcggagagcttgatcaccatgatgtatctcagcgagcac 788
||||| ||||||||||||||||| |||| ||||| ||||| ||||||||||| |||||
Sbjct: 70 acccatgcctcaccagtgggatcagagatcttgaggaccattatgtatctcagtgagcat 11
Query: 789 tcagagtc 796
||||||||
Sbjct: 10 tcagagtc 3
Score = 69.9 bits (35), Expect = 7e-010
Identities = 71/81 (87%), Gaps = 4/81 (4%)
Strand = Plus / Minus
Query: 317 catctacatataccttacagaagtgctaaaacccagtgagagcaacacacagaacagtaa 376
||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct: 480 catctacatat--cttacagaagtgctaaagaccaatgagagca--acacagaacagtaa 425
Query: 377 tcaagttactggagctcaaaa 397
| |||||||| |||||||||
Sbjct: 424 taaagttactacagctcaaaa 404
>gb|CW135162.1|CW135162 104_519_11117699_116_34830_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117699, DNA
sequence
Length = 563
Score = 311 bits (157), Expect = 1e-082
Identities = 211/229 (92%)
Strand = Plus / Minus
Query: 429 tccttcaagaaccaccagaaagactgcgtcttctagcaagcggtgagcttcgcgatctct 488
||||||| ||||||||||||||| ||| ||||||||||||| || |||||||||||||||
Sbjct: 377 tccttcacgaaccaccagaaagattgcatcttctagcaagcagtaagcttcgcgatctct 318
Query: 489 tcaagcaagtacttggactcagctgcgaagtcgaccggtgcttcacccctcacggtgatt 548
||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 317 tcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtgatc 258
Query: 549 ctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcggaacaggtgagga 608
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 257 ctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgagga 198
Query: 609 acccaggtggcttccttgagcttgagaacgtagctgtcgtccccctcct 657
|||||||||||||||||||||||||||| ||| ||||| || |||||||
Sbjct: 197 acccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcct 149
Score = 79.8 bits (40), Expect = 7e-013
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatg 698
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 44 cctctttcctgatccgatcaagctcgtcagcgctgcagccaatg 1
Score = 69.9 bits (35), Expect = 7e-010
Identities = 71/81 (87%), Gaps = 4/81 (4%)
Strand = Plus / Minus
Query: 317 catctacatataccttacagaagtgctaaaacccagtgagagcaacacacagaacagtaa 376
||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 487 catctacatat--cttacagaagtgctaaagaccaatgagagcaa--cacagaacagtaa 432
Query: 377 tcaagttactggagctcaaaa 397
| |||||||| |||||||||
Sbjct: 431 taaagttactacagctcaaaa 411
>gb|CW135163.1|CW135163 104_519_11117699_148_34826_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117699, DNA
sequence
Length = 563
Score = 311 bits (157), Expect = 1e-082
Identities = 211/229 (92%)
Strand = Plus / Plus
Query: 429 tccttcaagaaccaccagaaagactgcgtcttctagcaagcggtgagcttcgcgatctct 488
||||||| ||||||||||||||| ||| ||||||||||||| || |||||||||||||||
Sbjct: 185 tccttcacgaaccaccagaaagattgcatcttctagcaagcagtaagcttcgcgatctct 244
Query: 489 tcaagcaagtacttggactcagctgcgaagtcgaccggtgcttcacccctcacggtgatt 548
||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 245 tcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtgatc 304
Query: 549 ctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcggaacaggtgagga 608
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 305 ctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgagga 364
Query: 609 acccaggtggcttccttgagcttgagaacgtagctgtcgtccccctcct 657
|||||||||||||||||||||||||||| ||| ||||| || |||||||
Sbjct: 365 acccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcct 413
Score = 83.8 bits (42), Expect = 5e-014
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgat 700
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 518 cctctttcctgatccgatcaagctcgtcagcgctgcagccaatgat 563
Score = 69.9 bits (35), Expect = 7e-010
Identities = 71/81 (87%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 317 catctacatataccttacagaagtgctaaaacccagtgagagcaacacacagaacagtaa 376
||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct: 75 catctacatat--cttacagaagtgctaaagaccaatgagagca--acacagaacagtaa 130
Query: 377 tcaagttactggagctcaaaa 397
| |||||||| |||||||||
Sbjct: 131 taaagttactacagctcaaaa 151
>gb|CW413938.1|CW413938 fsbb001f113f13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f113f13, DNA
sequence
Length = 579
Score = 311 bits (157), Expect = 1e-082
Identities = 211/229 (92%)
Strand = Plus / Minus
Query: 429 tccttcaagaaccaccagaaagactgcgtcttctagcaagcggtgagcttcgcgatctct 488
||||||| ||||||||||||||| ||| ||||||||||||| || |||||||||||||||
Sbjct: 322 tccttcacgaaccaccagaaagattgcatcttctagcaagcagtaagcttcgcgatctct 263
Query: 489 tcaagcaagtacttggactcagctgcgaagtcgaccggtgcttcacccctcacggtgatt 548
||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 262 tcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtgatc 203
Query: 549 ctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcggaacaggtgagga 608
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 202 ctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgagga 143
Query: 609 acccaggtggcttccttgagcttgagaacgtagctgtcgtccccctcct 657
|||||||||||||||||||||||||||| ||| ||||| || |||||||
Sbjct: 142 acccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcct 94
Score = 61.9 bits (31), Expect = 2e-007
Identities = 70/81 (86%), Gaps = 4/81 (4%)
Strand = Plus / Minus
Query: 317 catctacatataccttacagaagtgctaaaacccagtgagagcaacacacagaacagtaa 376
||||||||||| ||||||||||||||||| ||| || |||||||||| |||||||||
Sbjct: 432 catctacatat--cttacagaagtgctaaagaccaatgcgagcaacaca--gaacagtaa 377
Query: 377 tcaagttactggagctcaaaa 397
| |||||||| |||||||||
Sbjct: 376 taaagttactacagctcaaaa 356
Score = 42.1 bits (21), Expect = 0.16
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 234 caaagttgcagatacacggaattggaactgcaattttgcaa 274
||||| |||||| ||| ||||| |||||||||||| |||||
Sbjct: 529 caaagctgcagagacaaggaatcggaactgcaattctgcaa 489
>gb|CW458016.1|CW458016 fsbb001f204b14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f204b14, DNA
sequence
Length = 738
Score = 311 bits (157), Expect = 1e-082
Identities = 211/229 (92%)
Strand = Plus / Plus
Query: 429 tccttcaagaaccaccagaaagactgcgtcttctagcaagcggtgagcttcgcgatctct 488
||||||| ||||||||||||||| ||| ||||||||||||| || |||||||||||||||
Sbjct: 98 tccttcacgaaccaccagaaagattgcatcttctagcaagcagtaagcttcgcgatctct 157
Query: 489 tcaagcaagtacttggactcagctgcgaagtcgaccggtgcttcacccctcacggtgatt 548
||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 158 tcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtgatc 217
Query: 549 ctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcggaacaggtgagga 608
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 218 ctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgagga 277
Query: 609 acccaggtggcttccttgagcttgagaacgtagctgtcgtccccctcct 657
|||||||||||||||||||||||||||| ||| ||||| || |||||||
Sbjct: 278 acccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcct 326
Score = 182 bits (92), Expect = 7e-044
Identities = 116/124 (93%)
Strand = Plus / Plus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 431 cctctttcctgatccgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgct 490
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||
Sbjct: 491 cgttgaacacggacacccatgcctcaccagtgggatcagagatcttgaggaccattatgt 550
Query: 775 atct 778
||||
Sbjct: 551 atct 554
Score = 157 bits (79), Expect = 4e-036
Identities = 103/111 (92%)
Strand = Plus / Plus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 628 ctcagtgagcattcagagtcgttcttttggcatccctcacaccagtatccagatccaaaa 687
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattc 887
|||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 688 gcttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatattc 738
>gb|CW177944.1|CW177944 104_591_11159301_116_36607_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159301, DNA
sequence
Length = 690
Score = 228 bits (115), Expect = 1e-057
Identities = 151/163 (92%)
Strand = Plus / Plus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 196 ctcagtgagcattcagagtcgttcttttggcatccctcacaccagtatccagatccaaaa 255
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct: 256 gcttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatattctggtcaggc 315
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
|||||||||||||||||||||| | |||||||||||||||||
Sbjct: 316 ttgatgtggcttatgatggcatttaaactgaagaaaacaggct 358
Score = 210 bits (106), Expect = 3e-052
Identities = 136/146 (93%)
Strand = Plus / Plus
Query: 938 cttttcctggcccatagcaggatcactggtgatgtgagacagaaaaactctatcagaata 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttttcctggcccatagcaggatcactggtgatgtgagacagaaaaactctatcagaata 494
Query: 998 catggacttgaaaccaccagcgcgtgtggcacccacttctgcactgattggtgccagtga 1057
||||||||| | |||||||| |||| ||||||| |||||||| |||||||| |||||
Sbjct: 495 catggacttcaggccaccagcccgtgcagcacccatttctgcaccaattggtgctagtga 554
Query: 1058 agtatctttgccttcagagtcatacc 1083
||||||||||||||||||||||||||
Sbjct: 555 agtatctttgccttcagagtcatacc 580
Score = 178 bits (90), Expect = 1e-042
Identities = 114/122 (93%)
Strand = Plus / Plus
Query: 657 tctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctcg 716
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1 tctttcctgatccgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgctcg 60
Query: 717 ttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgtat 776
||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 61 ttgaacacggacacccatgcctcaccagtgggatcagagatcttgaggaccattatgtat 120
Query: 777 ct 778
||
Sbjct: 121 ct 122
>gb|CW458017.1|CW458017 fsbb001f204b14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f204b14, DNA
sequence
Length = 651
Score = 226 bits (114), Expect = 5e-057
Identities = 123/126 (97%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ccttggaaatcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 171
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 170 tccaaaagctcttggccagtagtagtagcaagatcattccagagagaaatactaacagtt 111
Query: 1281 ttgcca 1286
||||||
Sbjct: 110 ttgcca 105
Score = 210 bits (106), Expect = 3e-052
Identities = 136/146 (93%)
Strand = Plus / Minus
Query: 938 cttttcctggcccatagcaggatcactggtgatgtgagacagaaaaactctatcagaata 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cttttcctggcccatagcaggatcactggtgatgtgagacagaaaaactctatcagaata 575
Query: 998 catggacttgaaaccaccagcgcgtgtggcacccacttctgcactgattggtgccagtga 1057
||||||||| | |||||||| |||| ||||||| |||||||| |||||||| |||||
Sbjct: 574 catggacttcaggccaccagcccgtgcagcacccatttctgcaccaattggtgctagtga 515
Query: 1058 agtatctttgccttcagagtcatacc 1083
||||||||||||||||||||||||||
Sbjct: 514 agtatctttgccttcagagtcatacc 489
Score = 71.9 bits (36), Expect = 2e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 1080 taccaggacttaagattcttagcctcaggcaagtcaggattaatctcgagagtacttctg 1139
||||| || |||| ||||| ||||||||||| ||| |||||||| | ||||| ||||||
Sbjct: 404 taccatgatttaacattctgagcctcaggcaggtctggattaatagcaagagtgcttctg 345
Query: 1140 ccaatagttgaaagagacacgcct 1163
|| ||||||||||| |||||||||
Sbjct: 344 cctatagttgaaagtgacacgcct 321
>gb|BZ348728.1|BZ348728 hp60e11.g2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp60e11 5', DNA sequence
Length = 674
Score = 218 bits (110), Expect = 1e-054
Identities = 122/126 (96%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 153 ccttggaaatcagatacttttaggctctttatcgcaacaccaggagaactgtcaaccatg 94
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 93 tccaaaagctcttggccagtagtagtagcaagatcattccagagagaaatactaacagtt 34
Query: 1281 ttgcca 1286
||||||
Sbjct: 33 ttgcca 28
Score = 210 bits (106), Expect = 3e-052
Identities = 136/146 (93%)
Strand = Plus / Minus
Query: 938 cttttcctggcccatagcaggatcactggtgatgtgagacagaaaaactctatcagaata 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cttttcctggcccatagcaggatcactggtgatgtgagacagaaaaactctatcagaata 498
Query: 998 catggacttgaaaccaccagcgcgtgtggcacccacttctgcactgattggtgccagtga 1057
||||||||| | |||||||| |||| ||||||| |||||||| |||||||| |||||
Sbjct: 497 catggacttcaggccaccagcccgtgcagcacccatttctgcaccaattggtgctagtga 438
Query: 1058 agtatctttgccttcagagtcatacc 1083
||||||||||||||||||||||||||
Sbjct: 437 agtatctttgccttcagagtcatacc 412
Score = 71.9 bits (36), Expect = 2e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 1080 taccaggacttaagattcttagcctcaggcaagtcaggattaatctcgagagtacttctg 1139
||||| || |||| ||||| ||||||||||| ||| |||||||| | ||||| ||||||
Sbjct: 327 taccatgatttaacattctgagcctcaggcaggtctggattaatagcaagagtgcttctg 268
Query: 1140 ccaatagttgaaagagacacgcct 1163
|| ||||||||||| |||||||||
Sbjct: 267 cctatagttgaaagtgacacgcct 244
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 899 gatgtggcttatgatggcatacagactgaagaaaacaggct 939
|||||||||||||||||||| | |||||||||| ||||||
Sbjct: 674 gatgtggcttatgatggcatttaaactgaagaaaccaggct 634
>gb|CW177945.1|CW177945 104_591_11159301_148_36608_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159301, DNA
sequence
Length = 710
Score = 216 bits (109), Expect = 5e-054
Identities = 115/117 (98%)
Strand = Plus / Minus
Query: 1170 tcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatgtccaaaagc 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatgtccaaaagc 614
Query: 1230 tcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagttttgcca 1286
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 613 tcttggccagtagtagtagcaagatcattccagagagaaatactaacagttttgcca 557
Score = 161 bits (81), Expect = 2e-037
Identities = 99/105 (94%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 113 gagtcatctgctacaacaatgtcacgctttggtattgtctcattgtcaatctttctccta 54
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatct 1391
|| ||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 53 acgctgagtgtgggagatacactctgaaccacaccgataatatct 9
>gb|CW228616.1|CW228616 104_668_11206476_148_37249_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206476, DNA
sequence
Length = 302
Score = 182 bits (92), Expect = 7e-044
Identities = 116/124 (93%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 160 cctctttcctgatccgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgct 101
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||
Sbjct: 100 cgttgaacacggacacccatgcctcaccagtgggatcagagatcttgaggaccattatgt 41
Query: 775 atct 778
||||
Sbjct: 40 atct 37
>gb|CW086376.1|CW086376 104_430_10946936_116_33018_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946936, DNA
sequence
Length = 685
Score = 161 bits (81), Expect = 2e-037
Identities = 138/157 (87%)
Strand = Plus / Minus
Query: 783 gagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaagcttca 842
||||| |||||| ||||||| | ||| | ||| ||||||||||||| ||||||||||||
Sbjct: 272 gagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagcttca 213
Query: 843 gtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggcttgatg 902
|||||||| ||| |||||| |||||||||| |||||||||| ||| ||||||||||||
Sbjct: 212 gtcaccttgttgcagcaggtcttgcaagcacgataccacatatgctgctcaggcttgatg 153
Query: 903 tggcttatgatggcatacagactgaagaaaacaggct 939
|||||||||||||||| || |||||||||||||||||
Sbjct: 152 tggcttatgatggcattcaaactgaagaaaacaggct 116
Score = 159 bits (80), Expect = 1e-036
Identities = 113/124 (91%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
Sbjct: 474 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 415
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
||||||||||||| ||||| ||||||||| ||||||| || | |||||| ||||||||||
Sbjct: 414 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 355
Query: 775 atct 778
||||
Sbjct: 354 atct 351
>gb|CW291515.1|CW291515 104_771_11413593_148_35573_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413593, DNA
sequence
Length = 646
Score = 161 bits (81), Expect = 2e-037
Identities = 138/157 (87%)
Strand = Plus / Minus
Query: 783 gagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaagcttca 842
||||| |||||| ||||||| | ||| | ||| ||||||||||||| ||||||||||||
Sbjct: 337 gagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagcttca 278
Query: 843 gtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggcttgatg 902
|||||||| ||| |||||| |||||||||| |||||||||| ||| ||||||||||||
Sbjct: 277 gtcaccttgttgcagcaggtcttgcaagcacgataccacatatgctgctcaggcttgatg 218
Query: 903 tggcttatgatggcatacagactgaagaaaacaggct 939
|||||||||||||||| || |||||||||||||||||
Sbjct: 217 tggcttatgatggcattcaaactgaagaaaacaggct 181
Score = 159 bits (80), Expect = 1e-036
Identities = 113/124 (91%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
Sbjct: 539 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 480
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
||||||||||||| ||||| ||||||||| ||||||| || | |||||| ||||||||||
Sbjct: 479 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 420
Query: 775 atct 778
||||
Sbjct: 419 atct 416
>gb|CW086375.1|CW086375 104_430_10946936_114_33015_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946936, DNA
sequence
Length = 708
Score = 159 bits (80), Expect = 1e-036
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
Sbjct: 362 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 421
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
||||||||||||| ||||| ||||||||| ||||||| || | |||||| ||||||||||
Sbjct: 422 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 481
Query: 775 atct 778
||||
Sbjct: 482 atct 485
Score = 137 bits (69), Expect = 4e-030
Identities = 126/145 (86%)
Strand = Plus / Plus
Query: 783 gagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaagcttca 842
||||| |||||| ||||||| | ||| | ||| ||||||||||||| ||||||||||||
Sbjct: 564 gagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagcttca 623
Query: 843 gtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggcttgatg 902
|||||||| ||| |||||| |||||||||| |||||||||| ||| ||||||||||||
Sbjct: 624 gtcaccttgttgcagcaggtcttgcaagcacgataccacatatgctgctcaggcttgatg 683
Query: 903 tggcttatgatggcatacagactga 927
|||||||||||||||| || |||||
Sbjct: 684 tggcttatgatggcattcaaactga 708
>gb|CW155872.1|CW155872 104_558_11146371_116_36363_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146371, DNA
sequence
Length = 755
Score = 159 bits (80), Expect = 1e-036
Identities = 113/124 (91%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
Sbjct: 350 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 291
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
||||||||||||| ||||| ||||||||| ||||||| || | |||||| ||||||||||
Sbjct: 290 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 231
Query: 775 atct 778
||||
Sbjct: 230 atct 227
Score = 143 bits (72), Expect = 6e-032
Identities = 129/148 (87%)
Strand = Plus / Minus
Query: 783 gagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaagcttca 842
||||| |||||| ||||||| | ||| | ||| ||||||||||||| ||||||||||||
Sbjct: 148 gagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagcttca 89
Query: 843 gtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggcttgatg 902
|||||||| ||| |||||| |||||||||| |||||||||| ||| ||||||||||||
Sbjct: 88 gtcaccttgttgcagcaggtcttgcaagcacgataccacatatgctgctcaggcttgatg 29
Query: 903 tggcttatgatggcatacagactgaaga 930
|||||||||||||||| || ||||||||
Sbjct: 28 tggcttatgatggcattcaaactgaaga 1
>gb|CW155873.1|CW155873 104_558_11146371_148_36364_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146371, DNA
sequence
Length = 732
Score = 159 bits (80), Expect = 1e-036
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
Sbjct: 604 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 663
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
||||||||||||| ||||| ||||||||| ||||||| || | |||||| ||||||||||
Sbjct: 664 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 723
Query: 775 atct 778
||||
Sbjct: 724 atct 727
>gb|CW291514.1|CW291514 104_771_11413593_116_35569_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413593, DNA
sequence
Length = 653
Score = 159 bits (80), Expect = 1e-036
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
Sbjct: 307 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 366
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
||||||||||||| ||||| ||||||||| ||||||| || | |||||| ||||||||||
Sbjct: 367 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 426
Query: 775 atct 778
||||
Sbjct: 427 atct 430
Score = 123 bits (62), Expect = 5e-026
Identities = 124/145 (85%)
Strand = Plus / Plus
Query: 783 gagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaagcttca 842
||||| |||||| ||||||| | ||| | ||| ||||||||||||| ||||||||||||
Sbjct: 509 gagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagcttca 568
Query: 843 gtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggcttgatg 902
|||||||| ||| | ||| |||||||||| |||||||||| ||| ||||||||||||
Sbjct: 569 gtcaccttgttgcagcnagtcttgcaagcacgataccacatatgctgctcaggcttgatg 628
Query: 903 tggcttatgatggcatacagactga 927
|||||||||||||||| || |||||
Sbjct: 629 tggcttatgatggcattcaaactga 653
>gb|BF587229.1|BF587229 FM1_33_G06.b2_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 433
Score = 135 bits (68), Expect = 1e-029
Identities = 80/84 (95%)
Strand = Plus / Minus
Query: 1493 agcattctcgtttagtgacaactcatagtcatttttgactgtcttgaactgcttgttggc 1552
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 433 agcattctcgtttagtgacatctcatagtcattttgaacagtcttgaactgcttgttggc 374
Query: 1553 aattctaagagatccttttgagac 1576
||||||||||||||||||||||||
Sbjct: 373 aattctaagagatccttttgagac 350
>gb|CW228615.1|CW228615 104_668_11206476_116_37250_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206476, DNA
sequence
Length = 574
Score = 69.9 bits (35), Expect = 7e-010
Identities = 71/81 (87%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 317 catctacatataccttacagaagtgctaaaacccagtgagagcaacacacagaacagtaa 376
||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct: 492 catctacatat--cttacagaagtgctaaagaccaatgagagca--acacagaacagtaa 547
Query: 377 tcaagttactggagctcaaaa 397
| |||||||| |||||||||
Sbjct: 548 taaagttactacagctcaaaa 568
Score = 42.1 bits (21), Expect = 0.16
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 234 caaagttgcagatacacggaattggaactgcaattttgcaa 274
||||| |||||| ||| ||||| |||||||||||| |||||
Sbjct: 395 caaagctgcagagacaaggaatcggaactgcaattctgcaa 435
>gb|CW314382.1|CW314382 104_805_11471800_116_35818_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471800, DNA
sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.040
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 190 acctaacatcatcaatcagtactcataatc 219
|||||||||||| |||||| ||||||||||
Sbjct: 127 acctaacatcatgaatcagcactcataatc 98
>gb|CL197375.1|CL197375 104_424_10943704_114_32385_060 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943704, DNA
sequence
Length = 714
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 337 aagtgctaaaacccagtgagagcaacaca 365
||||||||||||||| ||| |||||||||
Sbjct: 474 aagtgctaaaacccaatgacagcaacaca 502
>gb|CL197376.1|CL197376 104_424_10943704_116_32340_060 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943704, DNA
sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 337 aagtgctaaaacccagtgagagcaacaca 365
||||||||||||||| ||| |||||||||
Sbjct: 407 aagtgctaaaacccaatgacagcaacaca 379
>gb|CW082431.1|CW082431 104_424_10943704_114_32336_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943704, DNA
sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 337 aagtgctaaaacccagtgagagcaacaca 365
||||||||||||||| ||| |||||||||
Sbjct: 473 aagtgctaaaacccaatgacagcaacaca 501
>gb|DV162814.1|DV162814 P1-N10 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 198
Score = 42.1 bits (21), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1580 cgtacctcggccgngaccacgcta 1603
||||||||||||| ||||||||||
Sbjct: 94 cgtacctcggccgcgaccacgcta 117
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 376,061
Number of Sequences: 832831
Number of extensions: 376061
Number of successful extensions: 102296
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102201
Number of HSP's gapped (non-prelim): 87
length of query: 1603
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1583
effective length of database: 474,703,049
effective search space: 751454926567
effective search space used: 751454926567
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)