BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methy... 297 7e-079
gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Me... 178 5e-043
gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorgh... 145 6e-033
gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum met... 109 4e-022
gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation... 109 4e-022
gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) So... 96 5e-018
gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stres... 52 7e-005
gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorgh... 48 0.001
gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg... 48 0.001
gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg... 48 0.001
gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg... 48 0.001
gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg... 48 0.001
gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Me... 48 0.001
gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg... 48 0.001
gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infecte... 48 0.001
gb|CF758905.1|CF758905 DSAF1_38_A02.g1_A011 Drought-stresse... 48 0.001
gb|CF758940.1|CF758940 DSAF1_38_D04.g1_A011 Drought-stresse... 48 0.001
gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stresse... 48 0.001
gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves... 46 0.004
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 42 0.068
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.27
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.27
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.27
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.27
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.27
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.27
>gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii39c04, DNA sequence
Length = 589
Score = 297 bits (150), Expect = 7e-079
Identities = 174/182 (95%)
Strand = Plus / Plus
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 279 agaccgtatcagtgggcaggaggaggttcagtgcagagttccagctcgtgttccggttga 338
Query: 190 tcaagggtctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctg 249
|||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct: 339 tcaagggtctcatatttataacttttacagccatcgtggtaatcttaatagcaatccctg 398
Query: 250 gcatgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatggggtt 309
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gcatgacggttctggacatctttgtttgcatccttgctttcatgcccactggatggggtt 458
Query: 310 tg 311
||
Sbjct: 459 tg 460
>gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 397
Score = 178 bits (90), Expect = 5e-043
Identities = 113/122 (92%)
Strand = Plus / Plus
Query: 400 tgatgggacttctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcgg 459
|||||||||||||||||||||||||||| |||||||| ||||| || |||| ||||| |
Sbjct: 5 tgatgggacttctcctgttcacgcccattgccttccttgcctggttcccgttggtgtccg 64
Query: 460 aattccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgta 519
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 65 aattccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgta 124
Query: 520 tc 521
||
Sbjct: 125 tc 126
>gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211451, DNA
sequence
Length = 580
Score = 145 bits (73), Expect = 6e-033
Identities = 118/138 (85%)
Strand = Plus / Plus
Query: 422 gcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctgtt 481
|||||| |||||||| ||||| || |||||||||| |||||||||||||||||||||||
Sbjct: 1 gcccattgccttccttgcctggttcccgttcgtgtccgaattccagaccaggatgctgtt 60
Query: 482 caaccaggcgttcagcagnggtctgcagatctcccgtatcnnnnnnggacacaagaaaga 541
||||||||| |||||||| ||||||||||||||||||||| || |||||||||||
Sbjct: 61 caaccaggccttcagcagaggtctgcagatctcccgtatcctcggaggccacaagaaaga 120
Query: 542 cngagnnacnnggaacaa 559
| ||| || |||||||
Sbjct: 121 ccgagggacccggaacaa 138
>gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431366, DNA
sequence
Length = 343
Score = 109 bits (55), Expect = 4e-022
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
|||| |||||||| |||||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 96 agactgtatcagttggcaggaggaaattcagtgcagagttccagcttgtgttccggttga 155
Query: 190 tcaagggtctgatatttataacattta 216
|||||||||||||||| ||||| ||||
Sbjct: 156 tcaagggtctgatattcataacgttta 182
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttg 311
|||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 229 ggacatctttgtttgcatccttgcgttcatgccgactgggtggggtttg 277
>gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 727
Score = 109 bits (55), Expect = 4e-022
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
|||| |||||||| |||||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 324 agactgtatcagttggcaggaggaaattcagtgcagagttccagcttgtgttccggttga 265
Query: 190 tcaagggtctgatatttataacattta 216
|||||||||||||||| ||||| ||||
Sbjct: 264 tcaagggtctgatattcataacgttta 238
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttg 311
|||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 191 ggacatctttgtttgcatccttgcgttcatgccgactgggtggggtttg 143
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 95.6 bits (48), Expect = 5e-018
Identities = 137/168 (81%)
Strand = Plus / Plus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| ||| |||| || |||||||| ||||| |||||| | ||||| | ||
Sbjct: 73 gggctatggggatcggtcaaagcgcttgcccgaggctatgagatcatcatgggcttgctg 132
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|||||||| || ||||| ||||| || || || |||| || ||||| |||||||| |||
Sbjct: 133 ctgttcaccccgatcgcattcctagcttggttcccgtttgtttcggagttccagacaagg 192
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
||||| ||||||||||| ||||| || ||||||||||| || ||||||
Sbjct: 193 atgctattcaaccaggccttcagtagaggtctgcagatttctcgtatc 240
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
Length = 732
Score = 52.0 bits (26), Expect = 7e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 121 tcgttatgaagaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgt 180
||||||||||||| || || ||||| ||| ||| ||||||||||| ||||||||| | |
Sbjct: 180 tcgttatgaagacagtgtcggtgggaaggcgaacattcagtgcagatttccagctattct 239
Query: 181 tccggttgatcaag 194
|||| ||||||||
Sbjct: 240 tccgtctgatcaag 253
>gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463402, DNA
sequence
Length = 563
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 174 ctgttcaaccaggcgttcagcagaggt 148
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 352
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 250 ctgttcaaccaggcgttcagcagaggt 276
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 651
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 353 ctgttcaaccaggcgttcagcagaggt 379
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 508
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 196 ctgttcaaccaggcgttcagcagaggt 222
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 650
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 341 ctgttcaaccaggcgttcagcagaggt 367
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 601
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 283 ctgttcaaccaggcgttcagcagaggt 309
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 590
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 287 ctgttcaaccaggcgttcagcagaggt 313
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 612
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 285 ctgttcaaccaggcgttcagcagaggt 311
>gb|CF758905.1|CF758905 DSAF1_38_A02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_38_A02_A011 3', mRNA sequence
Length = 344
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 28 ctgttcaaccaggcgttcagcagaggt 54
>gb|CF758940.1|CF758940 DSAF1_38_D04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_38_D04_A011 3', mRNA sequence
Length = 345
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 28 ctgttcaaccaggcgttcagcagaggt 54
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
Length = 634
Score = 48.1 bits (24), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
||||||||||||||||||||||| |||
Sbjct: 290 ctgttcaaccaggcgttcagcagaggt 316
>gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 3', mRNA sequence
Length = 735
Score = 46.1 bits (23), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 478 tgttcaaccaggcgttcagcagnggt 503
|||||||||||||||||||||| |||
Sbjct: 435 tgttcaaccaggcgttcagcagaggt 460
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 42.1 bits (21), Expect = 0.068
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacg 21
|||||||||||||||||||||
Sbjct: 119 gcggccgcccgggcaggtacg 99
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 204 gcggccgcccgggcaggtac 223
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 211 gcggccgcccgggcaggtac 192
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 225 gcggccgcccgggcaggtac 244
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 2 gcggccgcccgggcaggtac 21
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 65
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 21 gcggccgcccgggcaggtac 2
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,373
Number of Sequences: 832831
Number of extensions: 107373
Number of successful extensions: 30464
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30431
Number of HSP's gapped (non-prelim): 32
length of query: 710
length of database: 491,359,669
effective HSP length: 20
effective length of query: 690
effective length of database: 474,703,049
effective search space: 327545103810
effective search space used: 327545103810
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)