BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418885.2.3
(568 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG356834.1|BG356834 OV2_10_E11.g1_A002 Ovary 2 (OV2) Sor... 54 1e-005
gb|BG357161.1|BG357161 OV2_10_E11.b1_A002 Ovary 2 (OV2) Sor... 54 1e-005
gb|BZ334102.1|BZ334102 hx76g03.g1 WGS-SbicolorF (JM107 adap... 46 0.003
gb|CW025375.1|CW025375 104_226_10488157_114_30497 Sorghum m... 46 0.003
gb|CL158584.1|CL158584 104_347_10803639_114_31377_231 Sorgh... 42 0.055
gb|CW074430.1|CW074430 104_347_10803639_116_31378_231 Sorgh... 42 0.055
gb|CW138789.1|CW138789 104_528_11134883_116_34890_038 Sorgh... 40 0.22
gb|CW138790.1|CW138790 104_528_11134883_148_34894_038 Sorgh... 40 0.22
gb|CW273192.1|CW273192 104_745_11403764_148_35717_070 Sorgh... 40 0.22
gb|CW286037.1|CW286037 104_763_11410664_116_35510_022 Sorgh... 40 0.22
>gb|BG356834.1|BG356834 OV2_10_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 375
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 336 tgctgctccaccctgcgtgcgcaggaggcatgcttgtgc 374
|||||||||| |||||| || ||||||||||||||||||
Sbjct: 167 tgctgctccatcctgcgagcacaggaggcatgcttgtgc 205
Score = 44.1 bits (22), Expect = 0.014
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 436 ttacctcgtgcggcatagccatccccaaatgcta 469
||||||| |||||||| ||||||||||| |||||
Sbjct: 261 ttacctcctgcggcatggccatccccaactgcta 294
>gb|BG357161.1|BG357161 OV2_10_E11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 413
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 336 tgctgctccaccctgcgtgcgcaggaggcatgcttgtgc 374
|||||||||| |||||| || ||||||||||||||||||
Sbjct: 167 tgctgctccatcctgcgagcacaggaggcatgcttgtgc 205
Score = 44.1 bits (22), Expect = 0.014
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 436 ttacctcgtgcggcatagccatccccaaatgcta 469
||||||| |||||||| ||||||||||| |||||
Sbjct: 261 ttacctcctgcggcatggccatccccaactgcta 294
>gb|BZ334102.1|BZ334102 hx76g03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx76g03 5', DNA sequence
Length = 490
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 336 tgctgctccaccctgcgtgcgcaggaggcatgcttgtgc 374
|||||||||| ||| || ||||||||| |||||||||||
Sbjct: 204 tgctgctccagcctacgagcgcaggagccatgcttgtgc 242
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 438 acctcgtgcggcatagccatccccaaatgcta 469
||||| |||||||| ||||||||||| |||||
Sbjct: 300 acctcctgcggcatggccatccccaactgcta 331
>gb|CW025375.1|CW025375 104_226_10488157_114_30497 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488157, DNA
sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 336 tgctgctccaccctgcgtgcgcaggaggcatgcttgtgc 374
|||||||||| ||| || ||||||||| |||||||||||
Sbjct: 148 tgctgctccagcctacgagcgcaggagccatgcttgtgc 186
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 438 acctcgtgcggcatagccatccccaaatgcta 469
||||| |||||||| ||||||||||| |||||
Sbjct: 244 acctcctgcggcatggccatccccaactgcta 275
>gb|CL158584.1|CL158584 104_347_10803639_114_31377_231 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803639, DNA
sequence
Length = 732
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 211 tggccctggtggtggtgatgg 231
|||||||||||||||||||||
Sbjct: 682 tggccctggtggtggtgatgg 702
>gb|CW074430.1|CW074430 104_347_10803639_116_31378_231 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803639, DNA
sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 211 tggccctggtggtggtgatgg 231
|||||||||||||||||||||
Sbjct: 351 tggccctggtggtggtgatgg 331
>gb|CW138789.1|CW138789 104_528_11134883_116_34890_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134883, DNA
sequence
Length = 693
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 218 ggtggtggtgatggcgacgacgag 241
|||||||||||||||||| |||||
Sbjct: 675 ggtggtggtgatggcgacaacgag 652
>gb|CW138790.1|CW138790 104_528_11134883_148_34894_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134883, DNA
sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 218 ggtggtggtgatggcgacgacgag 241
|||||||||||||||||| |||||
Sbjct: 182 ggtggtggtgatggcgacaacgag 205
>gb|CW273192.1|CW273192 104_745_11403764_148_35717_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403764, DNA
sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 218 ggtggtggtgatggcgacgacgag 241
|||||||||||||||||| |||||
Sbjct: 371 ggtggtggtgatggcgacaacgag 348
>gb|CW286037.1|CW286037 104_763_11410664_116_35510_022 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11410664, DNA sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tatatagatagcaagacaga 93
||||||||||||||||||||
Sbjct: 13 tatatagatagcaagacaga 32
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,145
Number of Sequences: 832831
Number of extensions: 204145
Number of successful extensions: 60046
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60030
Number of HSP's gapped (non-prelim): 16
length of query: 568
length of database: 491,359,669
effective HSP length: 19
effective length of query: 549
effective length of database: 475,535,880
effective search space: 261069198120
effective search space used: 261069198120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)