BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.1
(614 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassino... 722 0.0
gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots ... 670 0.0
gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle... 624 e-177
gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum b... 613 e-174
gb|BG052086.1|BG052086 RHIZ2_5_H11.b1_A003 Rhizome2 (RHIZ2)... 398 e-109
gb|CN146201.1|CN146201 WOUND1_38_C11.g1_A002 Wounded leaves... 394 e-108
gb|CX609750.1|CX609750 ANR1_14_B09.g1_A002 Anaerobic roots ... 224 7e-057
gb|CW386868.1|CW386868 fsbb001f070p13f0 Sorghum methylation... 161 9e-038
gb|CW097070.1|CW097070 104_463_11002253_148_34358_031 Sorgh... 159 4e-037
gb|CW294831.1|CW294831 104_775_11415393_116_35774_033 Sorgh... 159 4e-037
gb|CW477444.1|CW477444 fsbb001f234m15f0 Sorghum methylation... 159 4e-037
gb|CW477445.1|CW477445 fsbb001f234m15k0 Sorghum methylation... 159 4e-037
gb|CW491399.1|CW491399 fsbb001f281e01f0 Sorghum methylation... 159 4e-037
gb|AW287677.2|AW287677 LG1_271_A09.b1_A002 Light Grown 1 (L... 159 4e-037
gb|BG051067.1|BG051067 FM1_55_H09.b1_A003 Floral-Induced Me... 159 4e-037
gb|CD221282.1|CD221282 CCC1_74_C08.g1_A007 Callus culture/c... 159 4e-037
gb|CN130770.1|CN130770 RHOH1_43_E05.g1_A002 Acid- and alkal... 159 4e-037
gb|CW133418.1|CW133418 104_517_11116752_148_34815_094 Sorgh... 155 6e-036
gb|CW294832.1|CW294832 104_775_11415393_148_35775_033 Sorgh... 155 6e-036
gb|CW391887.1|CW391887 fsbb001f078d24k0 Sorghum methylation... 127 1e-027
gb|BG051066.1|BG051066 FM1_55_H08.b1_A003 Floral-Induced Me... 127 1e-027
gb|CW252313.1|CW252313 104_715_11224427_148_35090_042 Sorgh... 115 5e-024
gb|CW058559.1|CW058559 104_301_10518804_115_30164 Sorghum m... 113 2e-023
gb|CW178025.1|CW178025 104_591_11159343_148_36608_054 Sorgh... 113 2e-023
gb|CN145583.1|CN145583 WOUND1_33_H10.g1_A002 Wounded leaves... 109 3e-022
gb|CW450904.1|CW450904 fsbb001f189m03f0 Sorghum methylation... 107 1e-021
gb|CL157009.1|CL157009 104_344_10783254_114_31373_198 Sorgh... 100 3e-019
gb|CL157010.1|CL157010 104_344_10783254_116_31374_198 Sorgh... 100 3e-019
gb|CW386869.1|CW386869 fsbb001f070p13k0 Sorghum methylation... 84 2e-014
gb|CW252312.1|CW252312 104_715_11224427_116_35094_042 Sorgh... 70 3e-010
gb|BG948491.1|BG948491 IP1_10_D02.b1_A002 Immature pannicle... 70 3e-010
gb|CW453085.1|CW453085 fsbb001f193o24f0 Sorghum methylation... 68 1e-009
gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sor... 68 1e-009
gb|CW162418.1|CW162418 104_569_11150932_116_36441_004 Sorgh... 64 2e-008
gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation... 62 6e-008
gb|BI076120.1|BI076120 IP1_25_A09.b1_A002 Immature pannicle... 62 6e-008
gb|CL178986.1|CL178986 104_387_10894976_116_31906_272 Sorgh... 58 1e-006
gb|BZ423764.1|BZ423764 id53a11.g1 WGS-SbicolorF (DH5a methy... 52 6e-005
gb|BZ424019.1|BZ424019 id56a09.g1 WGS-SbicolorF (DH5a methy... 52 6e-005
gb|CW025249.1|CW025249 104_226_10488078_116_30523 Sorghum m... 52 6e-005
gb|BG464985.1|BG464985 EM1_34_F10.b1_A002 Embryo 1 (EM1) So... 52 6e-005
gb|CW483980.1|CW483980 fsbb001f245o03f0 Sorghum methylation... 50 2e-004
gb|CW196811.1|CW196811 104_621_11181361_148_36818_015 Sorgh... 44 0.015
gb|BF421447.1|BF421447 FM1_8_H05.b1_A003 Floral-Induced Mer... 40 0.23
gb|BG488011.1|BG488011 RHIZ2_62_A10.g1_A003 Rhizome2 (RHIZ2... 40 0.23
gb|BI211424.1|BI211424 IP1_60_F02.b1_A002 Immature pannicle... 40 0.23
gb|BI351252.1|BI351252 IP1_69_A05.b1_A002 Immature pannicle... 40 0.23
gb|CF428097.1|CF428097 PH1_12_B04.g1_A002 Phosphorous-defic... 40 0.23
gb|CN127429.1|CN127429 RHOH1_23_A07.b1_A002 Acid- and alkal... 40 0.23
gb|CN127512.1|CN127512 RHOH1_23_A07.g3_A002 Acid- and alkal... 40 0.23
>gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_C02_A002 5', mRNA sequence
Length = 777
Score = 722 bits (364), Expect = 0.0
Identities = 403/416 (96%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 362 ccgtcgatgagtatgagaaatatcatggttactatggagggaaggaggaagcaagaaagt 421
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 422 ccaactatactgatatggttaataaatactatgatctagccactagcttctatgagtatg 481
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 482 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgcgaaagca 541
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 542 tcaagcgacatgagcattttcttgccctgcaacttggtttgaagccaggaatgaaggttt 601
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 661
Query: 475 cagttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgtt 534
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 662 cagttaccggattgaataacaatgagtaccagataaccaggggaaaggagctcaatcgtt 721
Query: 535 tagcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccg 590
| ||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||
Sbjct: 722 tggcaggaattagtggaacctgtgattttgtccaggcagacttcatgaaaatgccg 777
>gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 5', mRNA sequence
Length = 804
Score = 670 bits (338), Expect = 0.0
Identities = 413/438 (94%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 238 gtcgatgagtatgagaaatatcatggatattatggagggaaggaggaagcaagaaagtcc 297
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 298 aactacactgatatggttaacaaatattatgatcttgccactagcttctatgagtatggt 357
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 358 tggggtgaatccttccactttgctcacagatggaatggagaatccttgcgtgaaagcatc 417
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 418 aagcgtcatgagcattttcttgccctgcagcttggcttgaaaccaggaatgaaggttttg 477
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 478 gatgtgggctgcggaataggtggaccgctgagagagattgcgagatttagctcaacttca 537
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 538 gttactggattgaataacaatgaataccagataaccaggggaaaggagctcaatcggttg 597
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
|||||| |||||||||| ||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 598 gcaggagttagtggaacctgtgattttgtcaaggcagacttcatgaagatgccatttgat 657
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 658 gataacacttttgatgct 675
>gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 624 bits (315), Expect = e-177
Identities = 375/395 (94%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 118 gtcgatgagtatgagaaatatcatggatattatggagggaaggaggaagcaagaaagtcc 177
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 178 aactacactgatatggttaacaaatattatgatcttgccactagcttctatgagtatggt 237
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 238 tggggtgaatccttccactttgctcacagatggaatggagaatccttgcgtgaaagcatc 297
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 298 aagcgtcatgagcattttcttgccctgcagcttggcttgaaaccaggaatgaaggttttg 357
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 358 gatgtgggctgcggaataggtggaccgctgagagagattgcaagatttagctcaacttca 417
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 418 gttactggattgaataacaatgaataccagataaccaggggaaaggagctcaatcggttg 477
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggc 571
|||||| |||||||||| |||||||||||||||||
Sbjct: 478 gcaggagttagtggaacctgtgattttgtcaaggc 512
>gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 5', mRNA sequence
Length = 738
Score = 613 bits (309), Expect = e-174
Identities = 337/345 (97%), Gaps = 1/345 (0%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 394 ccgtcgatgagtatgagaaatatcatggttactatggagggaaggaggaagcaagaaagt 453
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 454 ccaactatactgatatggttaataaatactatgatctagccactagcttctatgagtatg 513
Query: 295 g-ttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagc 353
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 514 ggttggggtgaatccttccactttgctcacagatggaatggagaatccttacgcgaaagc 573
Query: 354 atcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtt 413
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 574 atcaagcgacatgagcattttcttgccctgcaacttggtttgaagccaggaatgaaggtt 633
Query: 414 ttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaact 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaact 693
Query: 474 tcagttaccggattgaataacaacgaataccagataaccagggga 518
||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 694 tcagttaccggattgaataacaatgagtaccagataaccagggga 738
>gb|BG052086.1|BG052086 RHIZ2_5_H11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 517
Score = 398 bits (201), Expect = e-109
Identities = 219/225 (97%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 293 ccgtccatgagtatgagaaatatcatggttactatggagggaaggaggaagcaagaaagt 352
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 353 ccaactatactgatatggttaataaatactatgatctagccactagcttctatgagtatg 412
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 413 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgcgaaagca 472
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaac 399
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 473 tcaagcgacatgagcattttcttgccctgcaacttggattgaaac 517
>gb|CN146201.1|CN146201 WOUND1_38_C11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_38_C11_A002 5', mRNA sequence
Length = 607
Score = 394 bits (199), Expect = e-108
Identities = 217/223 (97%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 383 ccgtcgatgagtatgagaaatatcatggttactatggagggaaggaggaagcaagaaagt 442
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 ccaactatacagatatggttaataaatactatgatctaaccactagcttctatgagtatg 502
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 503 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgcgaaagca 562
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaa 397
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcaagcgacatgagcattttcttgccctgcaacttggtttgaa 605
>gb|CX609750.1|CX609750 ANR1_14_B09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_B09_A002 5', mRNA sequence
Length = 508
Score = 224 bits (113), Expect = 7e-057
Identities = 125/129 (96%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct: 380 ccgtcgatgagtatgagaaatatcatggttactatggagggaaggaggaagcgagaaagt 439
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 ccaactatactgatatggttaataaatactatgatctagccactagcttctatgagtatg 499
Query: 295 gttggggtg 303
|||||||||
Sbjct: 500 gttggggtg 508
>gb|CW386868.1|CW386868 fsbb001f070p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070p13, DNA
sequence
Length = 695
Score = 161 bits (81), Expect = 9e-038
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 347 agatggaatggagaatccttacgcgaaagcatcaagcgacatgagcattttcttgccctg 406
Query: 384 caacttggtttgaaaccaggaatgaaggt 412
|||||||||||||| ||||||||||||||
Sbjct: 407 caacttggtttgaagccaggaatgaaggt 435
Score = 141 bits (71), Expect = 9e-032
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ggttaataaatactatgatctagccactagcttctatgagtatggttggggtgaatcctt 166
Query: 311 ccactttgctcacag 325
|||||||||||||||
Sbjct: 167 ccactttgctcacag 181
Score = 105 bits (53), Expect = 5e-021
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagattta 465
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 519 aggttttagatgtgggctgtggaatacgtggaccactgagagaaattgcaagattta 575
>gb|CW097070.1|CW097070 104_463_11002253_148_34358_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002253, DNA
sequence
Length = 662
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 167 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 226
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 227 cgccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 286
Query: 151 cgcc 154
||||
Sbjct: 287 cgcc 290
>gb|CW294831.1|CW294831 104_775_11415393_116_35774_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415393, DNA
sequence
Length = 704
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 389 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 448
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 449 cgccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 508
Query: 151 cgcc 154
||||
Sbjct: 509 cgcc 512
>gb|CW477444.1|CW477444 fsbb001f234m15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234m15, DNA
sequence
Length = 673
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 419 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 478
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 479 cgccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 538
Query: 151 cgcc 154
||||
Sbjct: 539 cgcc 542
>gb|CW477445.1|CW477445 fsbb001f234m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234m15, DNA
sequence
Length = 711
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Minus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 474 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 415
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 414 cgccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 355
Query: 151 cgcc 154
||||
Sbjct: 354 cgcc 351
>gb|CW491399.1|CW491399 fsbb001f281e01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281e01, DNA
sequence
Length = 268
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 115 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 174
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 175 cgccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 234
Query: 151 cgcc 154
||||
Sbjct: 235 cgcc 238
>gb|AW287677.2|AW287677 LG1_271_A09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 28 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 87
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 88 cgccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 147
Query: 151 cgcc 154
||||
Sbjct: 148 cgcc 151
>gb|BG051067.1|BG051067 FM1_55_H09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 565
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 6 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 65
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 66 cgccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 125
Query: 151 cgcc 154
||||
Sbjct: 126 cgcc 129
>gb|CD221282.1|CD221282 CCC1_74_C08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_C08_A007 5', mRNA sequence
Length = 721
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 27 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 86
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 87 cgccgcccgtcgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 146
Query: 151 cgcc 154
||||
Sbjct: 147 cgcc 150
>gb|CN130770.1|CN130770 RHOH1_43_E05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_43_E05_A002 5', mRNA sequence
Length = 884
Score = 159 bits (80), Expect = 4e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 28 ctcccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcc 87
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||
Sbjct: 88 cgccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagca 147
Query: 151 cgcc 154
||||
Sbjct: 148 cgcc 151
>gb|CW133418.1|CW133418 104_517_11116752_148_34815_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116752, DNA
sequence
Length = 493
Score = 155 bits (78), Expect = 6e-036
Identities = 111/122 (90%)
Strand = Plus / Minus
Query: 33 cccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcccg 92
||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 493 cccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcccg 434
Query: 93 ccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaacacg 152
||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||||
Sbjct: 433 ccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagcacg 374
Query: 153 cc 154
||
Sbjct: 373 cc 372
>gb|CW294832.1|CW294832 104_775_11415393_148_35775_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415393, DNA
sequence
Length = 656
Score = 155 bits (78), Expect = 6e-036
Identities = 111/122 (90%)
Strand = Plus / Minus
Query: 33 cccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcccg 92
||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 656 cccaccaccgccgcgcgcgagccctagcccgatctcgccggcggcaggcgccagatcccg 597
Query: 93 ccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaacacg 152
||||||| ||| ||||||||||||||||||| || | ||||||||||| ||||| ||||
Sbjct: 596 ccgcccgttgcgccccgggacgcgccccgccggattcaccgctcctcgcgctgcagcacg 537
Query: 153 cc 154
||
Sbjct: 536 cc 535
>gb|CW391887.1|CW391887 fsbb001f078d24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 725
Score = 127 bits (64), Expect = 1e-027
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 258 aaatactatgatcttgccactagcttctatgagtatggttggggtgaatccttccacttt 317
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aaatattatgatcttgccactagcttctatgagtatggttggggtgaatccttccacttt 119
Query: 318 gctcacag 325
||||||||
Sbjct: 120 gctcacag 127
Score = 117 bits (59), Expect = 1e-024
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 338 atccttacgtgaaagcatcaagcgacatgagcattttcttgccctgcaacttggtttgaa 397
|||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 296 atccttgcgtgaaagcatcaagcgtcatgagcattttcttgccctgcagcttggcttgaa 355
Query: 398 accaggaatgaaggt 412
|||||||||||||||
Sbjct: 356 accaggaatgaaggt 370
Score = 83.8 bits (42), Expect = 2e-014
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 466
||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 456 aggttttggatgtgggctgcggaataggtggaccgctgagagagattgcaagatttag 513
>gb|BG051066.1|BG051066 FM1_55_H08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 457
Score = 127 bits (64), Expect = 1e-027
Identities = 109/124 (87%)
Strand = Plus / Plus
Query: 31 ctcccaccaccgccgagcgcgagccctagcccgatctagccggcggcaggcaccagatcc 90
|||||||| ||| || ||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct: 6 ctcccaccgccggcgcgcgcgagccctagcccgatctcgccggcggtaggcgccagatcc 65
Query: 91 cgccgcccgcggcgtcccgggacgcgccccgccgaatccgccgctcctcgcactgcaaca 150
||||||||| ||| ||||||||||||||||||| || | ||| ||||||| ||||| ||
Sbjct: 66 cgccgcccgttgcgccccgggacgcgccccgccggattcaccggtcctcgcgctgcagca 125
Query: 151 cgcc 154
||||
Sbjct: 126 cgcc 129
>gb|CW252313.1|CW252313 104_715_11224427_148_35090_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224427, DNA
sequence
Length = 724
Score = 115 bits (58), Expect = 5e-024
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 409 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 aggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttag 136
Score = 69.9 bits (35), Expect = 3e-010
Identities = 55/59 (93%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 465 agctcaacttcagttaccgga-ttgaataacaacgaataccagataaccaggggaaagg 522
||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||
Sbjct: 652 agctcaacttcagttaccggatttgaataac-atgagtaccagataaccaggggaaagg 709
>gb|CW058559.1|CW058559 104_301_10518804_115_30164 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518804, DNA
sequence
Length = 618
Score = 113 bits (57), Expect = 2e-023
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
|||||||||||||||||||||| |||| |||||||||| |||||||||||||||| |||
Sbjct: 82 agatggaatggagaatccttacttgaatgcatcaagcggcatgagcattttcttgtactg 141
Query: 384 caacttggtttgaaaccaggaatgaaggt 412
|| ||||| ||||||| ||||||||||||
Sbjct: 142 cagcttggcttgaaacaaggaatgaaggt 170
>gb|CW178025.1|CW178025 104_591_11159343_148_36608_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159343, DNA
sequence
Length = 639
Score = 113 bits (57), Expect = 2e-023
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaactatac 244
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 85 gtatgagaaatatcatggatattatggagggaaggaggaagcaagaaagtccaactacac 26
Query: 245 tgatatggt 253
|||||||||
Sbjct: 25 tgatatggt 17
>gb|CN145583.1|CN145583 WOUND1_33_H10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_33_H10_A002 5', mRNA sequence
Length = 433
Score = 109 bits (55), Expect = 3e-022
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 371 ccgtcgatgagtatgagaaatatcatggttactatggagggaaggaggaagcaagaaagt 430
Query: 235 cca 237
|||
Sbjct: 431 cca 433
>gb|CW450904.1|CW450904 fsbb001f189m03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f189m03, DNA
sequence
Length = 446
Score = 107 bits (54), Expect = 1e-021
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 324 agatggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctg 383
|||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||
Sbjct: 24 agatggaatggagaatccttacttgaatgcatcaagcggnatgagcattttcttgtactg 83
Query: 384 caacttggtttgaaaccaggaatgaaggt 412
|| ||||| ||||||| ||||||||||||
Sbjct: 84 cagcttggcttgaaacaaggaatgaaggt 112
>gb|CL157009.1|CL157009 104_344_10783254_114_31373_198 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783254, DNA
sequence
Length = 747
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 465 agctcaacttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 435 agctcaacttcagttaccggattgaataacaatgagtaccagataaccaggggaaagg 492
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 520 aggagctcaaccgtttagcaggaattagtggaacatgtgattttgtcaagg 570
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 576 aggagctcaatcgtttggcaggaattagtggaacctgtgattttgtcaagg 626
>gb|CL157010.1|CL157010 104_344_10783254_116_31374_198 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783254, DNA
sequence
Length = 749
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 465 agctcaacttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 709 agctcaacttcagttaccggattgaataacaatgagtaccagataaccaggggaaagg 652
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 520 aggagctcaaccgtttagcaggaattagtggaacatgtgattttgtcaagg 570
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 568 aggagctcaatcgtttggcaggaattagtggaacctgtgattttgtcaagg 518
Score = 69.9 bits (35), Expect = 3e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 157 aggcagacttcatgaaaatgccgttcgatgacaacactttcgatgct 111
>gb|CW386869.1|CW386869 fsbb001f070p13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070p13, DNA
sequence
Length = 485
Score = 83.8 bits (42), Expect = 2e-014
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 465 agctcaacttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||
Sbjct: 279 agctcaacttcagttgccggattgaataacaatgagtgccagataaccaggggaaagg 222
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 520 aggagctcaaccgtttagcaggaattagtggaacatgtgattttgtcaagg 570
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 138 aggagctcaatcgtttggcaggaattagtggaacctgtgattttgtcaagg 88
>gb|CW252312.1|CW252312 104_715_11224427_116_35094_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224427, DNA
sequence
Length = 663
Score = 69.9 bits (35), Expect = 3e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 342 aggcagacttcatgaaaatgccgttcgatgacaacactttcgatgct 296
>gb|BG948491.1|BG948491 IP1_10_D02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 421
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggag 213
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 ccgtcgatgagtatgagaaatatcatggttactatggag 421
>gb|CW453085.1|CW453085 fsbb001f193o24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f193o24, DNA
sequence
Length = 753
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 465 agctcaacttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
|||||||||| ||||||| |||| |||||||| | |||||||||||| ||||||||||
Sbjct: 628 agctcaacttgagttaccagattaaataacaatggataccagataactaggggaaagg 571
>gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 67.9 bits (34), Expect = 1e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 243 actgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggt 302
|||||| |||| ||||| |||||||||||||||||| ||||||| || ||||| |||||
Sbjct: 477 actgatttggtgaataagtactatgatcttgccactggcttctacgaatatggatggggc 536
Query: 303 gaatccttccactttgct 320
|| || ||||| ||||||
Sbjct: 537 gactcattccattttgct 554
>gb|CW162418.1|CW162418 104_569_11150932_116_36441_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150932, DNA
sequence
Length = 720
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 186 tatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaacta 241
|||||||||||| ||| ||| |||| |||||||||| ||||||| |||||||||||
Sbjct: 428 tatgagaaatattatgaatattatgtagggaaggagaaagcaagaaagtccaacta 373
>gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 735
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 568 aggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
|||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 427 aggcagacttcatgaagatgccatttgatgataacacttttgatgct 381
>gb|BI076120.1|BI076120 IP1_25_A09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 552
Score = 61.9 bits (31), Expect = 6e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 226 caaggaagtccaactatactgatatggttaataaatactatgatcttgccactagcttct 285
||||||| || || || |||||| |||| ||||| |||||||||||||||||| ||||||
Sbjct: 444 caaggaaatcaaattacactgatttggtgaataagtactatgatcttgccactggcttct 503
Query: 286 atgagtatggttggggtga 304
| || |||| ||||||||
Sbjct: 504 acgaatatgtatggggtga 522
>gb|CL178986.1|CL178986 104_387_10894976_116_31906_272 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894976, DNA
sequence
Length = 772
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 255 aataaatactatgatcttgccactagcttctatgagtatggttggggtgaatccttccac 314
||||| |||||||||||||||||| ||||||| || ||||| ||||| || || |||||
Sbjct: 708 aataagtactatgatcttgccactggcttctacgaatatggatggggcgactcattccat 767
Query: 315 tttgc 319
|||||
Sbjct: 768 tttgc 772
>gb|BZ423764.1|BZ423764 id53a11.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id53a11 5', DNA sequence
Length = 690
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 469 caacttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||||||||| ||||||| ||||| | |||||||||||| | ||||||||
Sbjct: 238 caacttcagttacgagattgaacaacaatggataccagataactaagggaaagg 291
>gb|BZ424019.1|BZ424019 id56a09.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id56a09 5', DNA sequence
Length = 765
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 469 caacttcagttaccggattgaataacaacgaataccagataaccaggggaaagg 522
||||||||||||| ||||||| ||||| | |||||||||||| | ||||||||
Sbjct: 238 caacttcagttacgagattgaacaacaatggataccagataactaagggaaagg 291
>gb|CW025249.1|CW025249 104_226_10488078_116_30523 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488078, DNA
sequence
Length = 646
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 255 aataaatactatgatcttgccactagcttctatgagtatggttggggtga 304
||||| |||||||||||||||||| ||||||| || |||| ||||||||
Sbjct: 448 aataagtactatgatcttgccactggcttctacgaatatgtatggggtga 497
>gb|BG464985.1|BG464985 EM1_34_F10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 139
Score = 52.0 bits (26), Expect = 6e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 243 actgatatggttaataaatactatgatcttgccactagcttc 284
|||||| |||| ||||| |||||||||||||||||| |||||
Sbjct: 8 actgatttggtgaataagtactatgatcttgccactggcttc 49
>gb|CW483980.1|CW483980 fsbb001f245o03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245o03, DNA
sequence
Length = 629
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 255 aataaatactatgatcttgccactagcttctatgagtatgg 295
||||| |||||||||||||||||| ||||||| || |||||
Sbjct: 503 aataagtactatgatcttgccactggcttctacgaatatgg 543
>gb|CW196811.1|CW196811 104_621_11181361_148_36818_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181361, DNA
sequence
Length = 721
Score = 44.1 bits (22), Expect = 0.015
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 255 aataaatactatgatcttgccactagcttctatgagtatggttggggtgaatccttccac 314
||||| ||||||||||||| |||| | ||||| || ||||| ||||| || || |||||
Sbjct: 269 aataagtactatgatcttgtcactgggttctacgaatatggatggggcgactcattccat 210
Query: 315 tttgct 320
||||||
Sbjct: 209 tttgct 204
>gb|BF421447.1|BF421447 FM1_8_H05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 388
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 210 ggagggaaggaggaagcaaggaag 233
|||||||||||||||| |||||||
Sbjct: 85 ggagggaaggaggaaggaaggaag 62
>gb|BG488011.1|BG488011 RHIZ2_62_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 210 ggagggaaggaggaagcaaggaag 233
|||||||||||||||| |||||||
Sbjct: 573 ggagggaaggaggaaggaaggaag 596
>gb|BI211424.1|BI211424 IP1_60_F02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 366
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 210 ggagggaaggaggaagcaaggaag 233
|||||||||||||||| |||||||
Sbjct: 108 ggagggaaggaggaaggaaggaag 85
>gb|BI351252.1|BI351252 IP1_69_A05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 237
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 210 ggagggaaggaggaagcaaggaag 233
|||||||||||||||| |||||||
Sbjct: 89 ggagggaaggaggaaggaaggaag 66
>gb|CF428097.1|CF428097 PH1_12_B04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_12_B04_A002 5', mRNA sequence
Length = 742
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 ccaccaccgccgagcgcgag 53
||||||||||||||||||||
Sbjct: 635 ccaccaccgccgagcgcgag 654
>gb|CN127429.1|CN127429 RHOH1_23_A07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_A07_A002 3', mRNA sequence
Length = 740
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 ccaccaccgccgagcgcgag 53
||||||||||||||||||||
Sbjct: 135 ccaccaccgccgagcgcgag 154
>gb|CN127512.1|CN127512 RHOH1_23_A07.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_A07_A002 5', mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 ccaccaccgccgagcgcgag 53
||||||||||||||||||||
Sbjct: 614 ccaccaccgccgagcgcgag 633
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,396
Number of Sequences: 832831
Number of extensions: 170396
Number of successful extensions: 46074
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46009
Number of HSP's gapped (non-prelim): 63
length of query: 614
length of database: 491,359,669
effective HSP length: 19
effective length of query: 595
effective length of database: 475,535,880
effective search space: 282943848600
effective search space used: 282943848600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)