BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405341.2.2
(1164 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN141534.1|CN141534 OX1_52_F08.b1_A002 Oxidatively-stres... 1057 0.0
gb|BG241416.1|BG241416 RHIZ2_51_F11.g1_A003 Rhizome2 (RHIZ2... 844 0.0
gb|BG487896.1|BG487896 RHIZ2_60_F10.g1_A003 Rhizome2 (RHIZ2... 783 0.0
gb|BG466025.1|BG466025 RHIZ2_47_F06.g1_A003 Rhizome2 (RHIZ2... 745 0.0
gb|BG558619.1|BG558619 RHIZ2_58_B12.g1_A003 Rhizome2 (RHIZ2... 678 0.0
gb|BI074400.1|BI074400 IP1_14_A02.g1_A002 Immature pannicle... 672 0.0
gb|CD230642.1|CD230642 SS1_47_A03.b1_A012 Salt-stressed see... 654 0.0
gb|CD427581.1|CD427581 SA1_37_F10.b1_A002 Salicylic acid-tr... 567 e-160
gb|CF432090.1|CF432090 NIT1_14_D10.b1_A002 Nitrogen-deficie... 537 e-151
gb|BE595708.1|BE595708 PI1_55_G04.g1_A002 Pathogen induced ... 496 e-138
gb|CW346239.1|CW346239 104_849_11488918_116_36216_085 Sorgh... 484 e-134
gb|CW346240.1|CW346240 104_849_11488918_148_36215_085 Sorgh... 484 e-134
gb|CW273269.1|CW273269 104_745_11403804_148_35717_036 Sorgh... 430 e-118
gb|CL181676.1|CL181676 104_392_10896904_116_31926_280 Sorgh... 402 e-110
gb|CL181677.1|CL181677 104_392_10896904_148_31925_280 Sorgh... 353 2e-095
gb|BF704935.1|BF704935 FM1_46_E06.g2_A003 Floral-Induced Me... 309 3e-082
gb|CN141613.1|CN141613 OX1_52_F08.g1_A002 Oxidatively-stres... 283 2e-074
gb|CW273268.1|CW273268 104_745_11403804_116_35718_036 Sorgh... 244 2e-062
gb|BE595455.1|BE595455 PI1_55_G04.b1_A002 Pathogen induced ... 216 3e-054
gb|CW371767.1|CW371767 fsbb001f047g04k0 Sorghum methylation... 167 3e-039
gb|CL181605.1|CL181605 104_392_10896863_148_31925_239 Sorgh... 98 2e-018
gb|BF422152.1|BF422152 FM1_12_E03.b1_A003 Floral-Induced Me... 50 5e-004
gb|CX612968.1|CX612968 GABR1_5_B04.g1_A002 GA- or brassinol... 50 5e-004
gb|BH246155.1|BH246155 pSB1773.2 S. bicolor BTx623 PstI-dig... 42 0.11
gb|BZ330157.1|BZ330157 hv90d08.g1 WGS-SbicolorF (JM107 adap... 42 0.11
gb|CW286520.1|CW286520 104_764_11410918_148_35518_091 Sorgh... 42 0.11
gb|CW358863.1|CW358863 fsbb001f026d22f0 Sorghum methylation... 42 0.11
gb|CW501035.1|CW501035 fsbb001f296k10k0 Sorghum methylation... 42 0.11
gb|BE598992.1|BE598992 PI1_86_A08.g1_A002 Pathogen induced ... 42 0.11
gb|BE599371.1|BE599371 PI1_88_F12.g1_A002 Pathogen induced ... 42 0.11
gb|BM327916.1|BM327916 PIC1_19_A06.g1_A002 Pathogen-infecte... 42 0.11
gb|CW264172.1|CW264172 104_732_11231135_148_35237_084 Sorgh... 40 0.45
gb|CW342998.1|CW342998 104_845_11487181_148_36182_061 Sorgh... 40 0.45
gb|CW392917.1|CW392917 fsbb001f079m03k0 Sorghum methylation... 40 0.45
gb|CW436728.1|CW436728 fsbb001f153h18f0 Sorghum methylation... 40 0.45
gb|CN126982.1|CN126982 RHOH1_20_G06.b1_A002 Acid- and alkal... 40 0.45
>gb|CN141534.1|CN141534 OX1_52_F08.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_52_F08_A002 3', mRNA sequence
Length = 812
Score = 1057 bits (533), Expect = 0.0
Identities = 715/773 (92%), Gaps = 12/773 (1%)
Strand = Plus / Plus
Query: 271 aggtggaagcctggatgaagtgctgcatgaaaagtctgaacagttggattgggatgcacg 330
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 3 aggtggaagcctggatgaagtgcttcatgaaaaatctgaacagttggattgggatgcacg 62
Query: 331 tattaacatcatacttggagctgcaaaaggcttgtcttacttgcatcacgattgttcgcc 390
||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct: 63 tattaacattatacttggagctgcaaaaggcttgtcttatttgcatcatgactgttcgcc 122
Query: 391 tcgaataatacatcgtgatatcaagtcgagcaacatcttgcttgacggcagttttgaggc 450
||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||
Sbjct: 123 tcgaataatacatcgtgatattaagtcaagcaacatcttgcttgatggcaattttgaggc 182
Query: 451 ccgcgtatcagactttggacttgcaaagcttttagaggacgaagaatcccatatcactac 510
||| || || ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 183 ccgtgtgtcggactttggacttgcaaagcttttagaggatgaagaatcacatattactac 242
Query: 511 aatagttgcaggaacatttggttatcttgcgccagagtatatgcagtttggcagagccac 570
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 243 aatagttgcaggaacatttggttatcttgcaccagagtatatgcaatttggcagagccac 302
Query: 571 cgagaagaccgatgtctacagttttggggttctggtacttgaaatactcagcggaaagcg 630
||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct: 303 cgagaagactgatgtctacagttttggggttttggtacttgaaatacttagtggaaagcg 362
Query: 631 acctaccgatgcatccttcattgagaagggattaaacattgttggatggttaaattttct 690
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gcctactgatgcatccttcattgagaagggattaaacattgttggatggttaaattttct 422
Query: 691 ggctggcgagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccga 750
|||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct: 423 ggctggtgagaaccgggagagggaaattgtcgatctgaactgtgaaggagtgcagactga 482
Query: 751 gaccttggacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcg 810
|||||| || || ||||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct: 483 gaccttagatgccctgctttctcttgccaagcaatgtgttagctctttgccagaggagcg 542
Query: 811 gccgacgatgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctag 870
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 543 gccgacaatgcacagggtggtacagatgctcgagtcggatgtaattacaccgtgccctag 602
Query: 871 cgacttctacgattcagagtagcctcctggacggacaagccacagtggtgccgctagttt 930
|||||||||||||||||||||| ||||||||| |||||||| ||| |||| |||
Sbjct: 603 cgacttctacgattcagagtagtctcctggac---aaagccaca---ctgctgctaattt 656
Query: 931 cccgtggaggcgcattcctttattctttgcagatattgtgtaaatgcattgccgcggtgt 990
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cccgtggaggcgcattcctttattctttgcagatattgtgtaaatgcattgccgcgg--- 713
Query: 991 ttgtttggtctcctccaatcggctggttcaacgggtgacatttttgcgtctgt 1043
||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 714 -tgtttggtctc--caaatcggctggttcaacgggtgacatttttgcgtctgt 763
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatt 1081
|||||||||||||||||||||||||||| ||||||
Sbjct: 777 tatctgtcatgctacaagttggctatatcctgatt 811
>gb|BG241416.1|BG241416 RHIZ2_51_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 678
Score = 844 bits (426), Expect = 0.0
Identities = 596/650 (91%), Gaps = 12/650 (1%)
Strand = Plus / Plus
Query: 394 aataatacatcgtgatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccg 453
|||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 1 aataatacatcgtgatattaagtcaagcaacatcttgcttgatggcaattttgaggcccg 60
Query: 454 cgtatcagactttggacttgcaaagcttttagaggacgaagaatcccatatcactacaat 513
|| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 61 tgtgtcggactttggacttgcaaagcttttagaggatgaagaatcacatattactacaat 120
Query: 514 agttgcaggaacatttggttatcttgcgccagagtatatgcagtttggcagagccaccga 573
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 121 agttgcaggaacatttggttatcttgcaccagagtatatgcaatttggcagagccaccga 180
Query: 574 gaagaccgatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacc 633
|||||| ||||||||||||||||||||| |||||||||||||||| || |||||||| ||
Sbjct: 181 gaagactgatgtctacagttttggggttttggtacttgaaatacttagtggaaagcggcc 240
Query: 634 taccgatgcatccttcattgagaagggattaaacattgttggatggttaaattttctggc 693
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tactgatgcatccttcattgagaagggattaaacattgttggatggttaaattttctggc 300
Query: 694 tggcgagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagac 753
||| |||||||||||||||||||| ||||||||||| || ||||||||||| || |||||
Sbjct: 301 tggtgagaaccgggagagggaaattgtcgatctgaactgcgaaggagtgcagactgagac 360
Query: 754 cttggacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggcc 813
||| || || ||||| ||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct: 361 cttagatgccctgctttctcttgccaagcaatgtgttagctctttgccagaggagcggcc 420
Query: 814 gacgatgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcga 873
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 421 gacaatgcacagggtggtacagatgctcgagtcggatgtaattacaccgtgccctagcga 480
Query: 874 cttctacgattcagagtagcctcctggacggacaagccacagtggtgccgctagtttccc 933
||||||||||||||||||| ||||||||| |||||||| ||| |||| ||||||
Sbjct: 481 cttctacgattcagagtagtctcctggac---aaagccaca---ctgctgctaatttccc 534
Query: 934 gtggaggcgcattcctttattctttgcagatattgtgtaaatgcattgccgcggtgtttg 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 535 gtggaggcgcattcctttattctttgcagatattgtgtaaatgcattgccgcgg----tg 590
Query: 994 tttggtctcctccaatcggctggttcaacgggtgacatttttgcgtctgt 1043
||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct: 591 tttggtctc--caaatcggctggttcaacgggtgacatttttgcttctgt 638
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttg 1067
|||||||||||||||||||||
Sbjct: 652 tatctgtcatgctacaagttg 672
>gb|BG487896.1|BG487896 RHIZ2_60_F10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 665
Score = 783 bits (395), Expect = 0.0
Identities = 556/607 (91%), Gaps = 12/607 (1%)
Strand = Plus / Plus
Query: 437 ggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagaggacgaagaa 496
|||| |||||||||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct: 4 ggcaattttgaggcccgtgtgtcggactttggacttgcaaagcttttagaggatgaagaa 63
Query: 497 tcccatatcactacaatagttgcaggaacatttggttatcttgcgccagagtatatgcag 556
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 64 tcacatattactacaatagttgcaggaacatttggttatcttgcaccagagtatatgcaa 123
Query: 557 tttggcagagccaccgagaagaccgatgtctacagttttggggttctggtacttgaaata 616
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 124 tttggcagagccaccgagaagactgatgtctacagttttggggttttggtacttgaaata 183
Query: 617 ctcagcggaaagcgacctaccgatgcatccttcattgagaagggattaaacattgttgga 676
|| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cttagtggaaagcggcctactgatgcatccttcattgagaagggattaaacattgttgga 243
Query: 677 tggttaaattttctggctggcgagaaccgggagagggaaatcgtcgatctgaattgtgaa 736
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||
Sbjct: 244 tggttaaattttctggctggtgagaaccgggagagggaaattgtcgatctgaactgcgaa 303
Query: 737 ggagtgcacaccgagaccttggacgctctgctctctctcgccaagcagtgtgtcagctct 796
|||||||| || |||||||| || || ||||| ||||| |||||||| ||||| ||||||
Sbjct: 304 ggagtgcagactgagaccttagatgccctgctttctcttgccaagcaatgtgttagctct 363
Query: 797 ttgccggaggagcggccgacgatgcacagggtggtacagatgctggagtcggatgtaatt 856
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 364 ttgccagaggagcggccgacaatgcacagggtggtacagatgctcgagtcggatgtaatt 423
Query: 857 acgccgtgccctagcgacttctacgattcagagtagcctcctggacggacaagccacagt 916
|| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 424 acaccgtgccctagcgacttctacgattcagagtagtctcctggac---aaagccaca-- 478
Query: 917 ggtgccgctagtttcccgtggaggcgcattcctttattctttgcagatattgtgtaaatg 976
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 -ctgctgctaatttcccgtggaggcgcattcctttattctttgcagatattgtgtaaatg 537
Query: 977 cattgccgcggtgtttgtttggtctcctccaatcggctggttcaacgggtgacatttttg 1036
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 538 cattgccgcgg----tgtttggtctc--caaatcggctggttcaacgggtgacatttttg 591
Query: 1037 cgtctgt 1043
| |||||
Sbjct: 592 cttctgt 598
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttacc 1100
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 612 tatctgtcatgctacaagttggctatatcctgatttaataagagagaacttacc 665
>gb|BG466025.1|BG466025 RHIZ2_47_F06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 640
Score = 745 bits (376), Expect = 0.0
Identities = 535/584 (91%), Gaps = 13/584 (2%)
Strand = Plus / Plus
Query: 461 gactttggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagttgca 520
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 2 gactttggacttgcaaagcttttagaggatgaagaatcacatattactacaatagttgca 61
Query: 521 ggaacatttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaagacc 580
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 62 ggaacatttggttatcttgcaccagagtatatgcaatttggcagagccaccgagaagact 121
Query: 581 gatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacctaccgat 640
||||||||||||||||||||| |||||||||||||||| || |||||||| ||||| |||
Sbjct: 122 gatgtctacagttttggggttttggtacttgaaatacttagtggaaagcggcctactgat 181
Query: 641 gcatccttcattgagaagggattaaacattgttggatggttaaattttctggctggcgag 700
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 182 gcatccttcattgagaagggattaaacattgttggatggttaaattttcttgctggtgag 241
Query: 701 aaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttggac 760
||||||||||||||||| ||||||||||| || ||||||||||| || |||||||| ||
Sbjct: 242 aaccgggagagggaaattgtcgatctgaactgcgaaggagtgcagactgagaccttagat 301
Query: 761 gctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacgatg 820
|| ||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 302 gccctgctttctcttgccaagcaatgtgttagctctttgccagaggagcggccgacaatg 361
Query: 821 cacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttctac 880
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 362 cacagggtggtacagatgctcgagtcggatgtaattacaccgtgccctagcgacttctac 421
Query: 881 gattcagagtagcctcctggacggacaagccacagtggtgccgctagttt-cccgtggag 939
|||||||||||| ||||||||| |||||||| ||| |||| ||| |||||||||
Sbjct: 422 gattcagagtagtctcctggac---aaagccaca---ctgctgctaatttccccgtggag 475
Query: 940 gcgcattcctttattctttgcagatattgtgtaaatgcattgccgcggtgtttgtttggt 999
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 476 gcgcattcctttattctttgcagatattgtgtaaatgcattgccgcgg----tgtttggt 531
Query: 1000 ctcctccaatcggctggttcaacgggtgacatttttgcgtctgt 1043
||| | ||||||||||||||||||||||||||||||| |||||
Sbjct: 532 ctc--caaatcggctggttcaacgggtgacatttttgcttctgt 573
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttacc 1100
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 587 tatctgtcatgctacaagttggctatatcctgatttaataagagagaacttacc 640
>gb|BG558619.1|BG558619 RHIZ2_58_B12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 581
Score = 678 bits (342), Expect = 0.0
Identities = 482/526 (91%), Gaps = 12/526 (2%)
Strand = Plus / Plus
Query: 518 gcaggaacatttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaag 577
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 1 gcaggaacatttggttatcttgcaccagagtatatgcaatttggcagagccaccgagaag 60
Query: 578 accgatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacctacc 637
|| ||||||||||||||||||||| |||||||||||||||| || |||||||| |||||
Sbjct: 61 actgatgtctacagttttggggttttggtacttgaaatacttagtggaaagcggcctact 120
Query: 638 gatgcatccttcattgagaagggattaaacattgttggatggttaaattttctggctggc 697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgcatccttcattgagaagggattaaacattgttggatggttaaattttctggctggt 180
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
|||||||||||||||||||| ||||||||||| || ||||||||||| || ||||||||
Sbjct: 181 gagaaccgggagagggaaattgtcgatctgaactgcgaaggagtgcagactgagacctta 240
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| || ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 241 gatgccctgctttctcttgccaagcaatgtgttagctctttgccagaggagcggccgaca 300
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttc 877
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 301 atgcacagggtggtacagatgctcgagtcggatgtaattacaccgtgccctagcgacttc 360
Query: 878 tacgattcagagtagcctcctggacggacaagccacagtggtgccgctagtttcccgtgg 937
||||||||||||||| ||||||||| |||||||| ||| |||| ||||||||||
Sbjct: 361 tacgattcagagtagtctcctggac---aaagccaca---ctgctgctaatttcccgtgg 414
Query: 938 aggcgcattcctttattctttgcagatattgtgtaaatgcattgccgcggtgtttgtttg 997
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 415 aggcgcattcctttattctttgcagatattgtgtaaatgcattgccgcgg----tgtttg 470
Query: 998 gtctcctccaatcggctggttcaacgggtgacatttttgcgtctgt 1043
||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct: 471 gtctc--caaatcggctggttcaacgggtgacatttttgcttctgt 514
Score = 93.7 bits (47), Expect = 3e-017
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 1050 ctgtcatgctacaagttggctatatgctgatttaataagagagaacttacc 1100
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 531 ctgtcatgctacaagttggctatattctgatttaataagagagaacttacc 581
>gb|BI074400.1|BI074400 IP1_14_A02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 570
Score = 672 bits (339), Expect = 0.0
Identities = 473/515 (91%), Gaps = 12/515 (2%)
Strand = Plus / Plus
Query: 529 tggttatcttgcgccagagtatatgcagtttggcagagccaccgagaagaccgatgtcta 588
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1 tggttatcttgcaccagagtatatgcaatttggcagagccaccgagaagactgatgtcta 60
Query: 589 cagttttggggttctggtacttgaaatactcagcggaaagcgacctaccgatgcatcctt 648
||||||||||||| |||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 61 cagttttggggttttggtacttgaaatacttagtggaaagcggcctactgatgcatcctt 120
Query: 649 cattgagaagggattaaacattgttggatggttaaattttctggctggcgagaaccggga 708
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 121 cattgagaagggattaaacattgttggatggttaaattttctggctggtgagaaccggga 180
Query: 709 gagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttggacgctctgct 768
||||||||| ||||||||||| |||||||||||||| || |||||||| || || |||||
Sbjct: 181 gagggaaattgtcgatctgaactgtgaaggagtgcagactgagaccttagatgccctgct 240
Query: 769 ctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacgatgcacagggt 828
||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 241 ttctcttgccaagcaatgtgttagctctttgccagaggagcggccgacaatgcacagggt 300
Query: 829 ggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttctacgattcaga 888
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 301 ggtacagatgctcgagtcggatgtaattacaccgtgccctagcgacttctacgattcaga 360
Query: 889 gtagcctcctggacggacaagccacagtggtgccgctagtttcccgtggaggcgcattcc 948
|||| ||||||||| |||||||| ||| |||| |||||||||||||||||||||
Sbjct: 361 gtagtctcctggac---aaagccaca---ctgctgctaatttcccgtggaggcgcattcc 414
Query: 949 tttattctttgcagatattgtgtaaatgcattgccgcggtgtttgtttggtctcctccaa 1008
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 415 tttattctttgcagatattgtgtaaatgcattgccgcgg----tgtttggtctc--caaa 468
Query: 1009 tcggctggttcaacgggtgacatttttgcgtctgt 1043
|||||||||||||||||||||||||||||||||||
Sbjct: 469 tcggctggttcaacgggtgacatttttgcgtctgt 503
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttacc 1100
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 517 tatctgtcatgctacaagttggctatatcctgatttaataagagagaacttacc 570
>gb|CD230642.1|CD230642 SS1_47_A03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_47_A03_A012 3', mRNA sequence
Length = 562
Score = 654 bits (330), Expect = 0.0
Identities = 461/502 (91%), Gaps = 12/502 (2%)
Strand = Plus / Plus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5 ccagagtatatgcaatttggcagagccaccgagaagactgatgtctacagttttggggtt 64
Query: 602 ctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaaggga 661
|||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 65 ttggtacttgaaatacttagtggaaagcggcctactgatgcatccttcattgagaaggga 124
Query: 662 ttaaacattgttggatggttaaattttctggctggcgagaaccgggagagggaaatcgtc 721
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 125 ttaaacattgttggatggttaaattttctggctggtgagaaccgggagagggaaattgtc 184
Query: 722 gatctgaattgtgaaggagtgcacaccgagaccttggacgctctgctctctctcgccaag 781
|||||||| |||||||||||||| || |||||||| || || ||||| ||||| ||||||
Sbjct: 185 gatctgaactgtgaaggagtgcagactgagaccttagatgccctgctttctcttgccaag 244
Query: 782 cagtgtgtcagctctttgccggaggagcggccgacgatgcacagggtggtacagatgctg 841
|| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 245 caatgtgttagctctttgccagaggagcggccgacaatgcacagggtggtacagatgctc 304
Query: 842 gagtcggatgtaattacgccgtgccctagcgacttctacgattcagagtagcctcctgga 901
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 gagtcggatgtaattacaccgtgccctagcgacttctacgattcagagtagtctcctgga 364
Query: 902 cggacaagccacagtggtgccgctagtttcccgtggaggcgcattcctttattctttgca 961
| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 365 c---aaagccaca---ctgctgctaatttcccgtggaggcgcattcctttattctttgca 418
Query: 962 gatattgtgtaaatgcattgccgcggtgtttgtttggtctcctccaatcggctggttcaa 1021
|||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 419 gatattgtgtaaatgcattgccgcgg----tgtttggtctc--caaatcggctggttcaa 472
Query: 1022 cgggtgacatttttgcgtctgt 1043
||||||||||||||||||||||
Sbjct: 473 cgggtgacatttttgcgtctgt 494
Score = 101 bits (51), Expect = 1e-019
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttacca 1101
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 508 tatctgtcatgctacaagttggctatatcctgatttaataagagagaacttacca 562
>gb|CD427581.1|CD427581 SA1_37_F10.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_37_F10_A002 3', mRNA sequence
Length = 572
Score = 567 bits (286), Expect = e-160
Identities = 461/509 (90%), Gaps = 19/509 (3%)
Strand = Plus / Plus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4 ccagagtatatgcaatttggcagagccaccgagaagactgatgtctacagttttggggtt 63
Query: 602 ctggtacttgaaatactcagcggaaag-cgacctaccgatgcatccttcattgagaaggg 660
|||||||||||||||| || |||||| || ||||| |||||||||||||||||||||||
Sbjct: 64 ttggtacttgaaatacttagtggaaagncggcctactgatgcatccttcattgagaaggg 123
Query: 661 attaaac--attgttggatggtt-aaattttctggct-ggcgagaa-ccgggagag-gga 714
||||||| |||||||||||||| ||||||||||||| || ||||| ||||||||| |||
Sbjct: 124 attaaacccattgttggatggtttaaattttctggctnggtgagaanccgggagagngga 183
Query: 715 aatcgtcgatctgaattgtgaaggagtgcacaccgagaccttggacgctctgctctctct 774
||| ||||||||||| |||||||||||||| || |||||||| || || ||||| |||||
Sbjct: 184 aattgtcgatctgaactgtgaaggagtgcagactgagaccttagatgccctgctttctct 243
Query: 775 cgccaagcagtgtgtcagctctttgccggaggagcggccgacgatgcacagggtggtaca 834
|||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 244 tgccaagcaatgtgttagctctttgccagaggagcggccgacaatgcacagggtggtaca 303
Query: 835 gatgctggagtcggatgtaattacgccgtgccctagcgacttctacgattcagagtagcc 894
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 304 gatgctcgagtcggatgtaattacaccgtgccctagcgacttctacgattcagagtagtc 363
Query: 895 tcctggacggacaagccacagtggtgccgctagtttcccgtggaggcgcattcctttatt 954
|||||||| |||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct: 364 tcctggac---aaagccaca---ctgctgctaatttcccgtggaggcgcattcctttatt 417
Query: 955 ctttgcagatattgtgtaaatgcattgccgcggtgtttgtttggtctcctccaatcggct 1014
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 418 ctttgcagatattgtgtaaatgcattgccgcgg----tgtttggtctc--caaatcggct 471
Query: 1015 ggttcaacgggtgacatttttgcgtctgt 1043
|||||||||||||||||||||||||||||
Sbjct: 472 ggttcaacgggtgacatttttgcgtctgt 500
Score = 105 bits (53), Expect = 9e-021
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttaccagt 1103
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 514 tatctgtcatgctacaagttggctatatcctgatttaataagagagaacttaccagt 570
>gb|CF432090.1|CF432090 NIT1_14_D10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_14_D10_A002 3', mRNA sequence
Length = 502
Score = 537 bits (271), Expect = e-151
Identities = 405/447 (90%), Gaps = 12/447 (2%)
Strand = Plus / Plus
Query: 597 gggttctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgaga 656
||||| |||||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct: 1 gggttttggtacttgaaatacttagtggaaagcggcctactgatgcatccttcattgaga 60
Query: 657 agggattaaacattgttggatggttaaattttctggctggcgagaaccgggagagggaaa 716
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 agggattaaacattgttggatggttaaattttctggctggtgagaaccgggagagggaaa 120
Query: 717 tcgtcgatctgaattgtgaaggagtgcacaccgagaccttggacgctctgctctctctcg 776
| |||||| |||| |||||||||||||| || |||||||| || || ||||| ||||| |
Sbjct: 121 ttgtcgatttgaactgtgaaggagtgcagactgagaccttagatgccctgctttctcttg 180
Query: 777 ccaagcagtgtgtcagctctttgccggaggagcggccgacgatgcacagggtggtacaga 836
||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 181 ccaagcaatgtgttagctctttgccagaggagcggccgacaatgcacagggtggtacaga 240
Query: 837 tgctggagtcggatgtaattacgccgtgccctagcgacttctacgattcagagtagcctc 896
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct: 241 tgctcgagtcggatgtaattacaccgtgccctagcgacttttacgattcagagtagtttc 300
Query: 897 ctggacggacaagccacagtggtgccgctagtttcccgtggaggcgcattcctttattct 956
|||||| |||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 301 ctggac---aaagccaca---ctgctgctaatttcccgtggaggcgcattcctttattct 354
Query: 957 ttgcagatattgtgtaaatgcattgccgcggtgtttgtttggtctcctccaatcggctgg 1016
||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct: 355 ttgcagatattgtgtaaatgcattgccgcgg----tgtttggtctc--caaatcggctgg 408
Query: 1017 ttcaacgggtgacatttttgcgtctgt 1043
|||||||||||||||||||||||||||
Sbjct: 409 ttcaacgggtgacatttttgcgtctgt 435
Score = 93.7 bits (47), Expect = 3e-017
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaactt 1097
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 449 tatctgtcatgctacaagttggctatatcctgatttaataagagagaactt 499
>gb|BE595708.1|BE595708 PI1_55_G04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 346
Score = 496 bits (250), Expect = e-138
Identities = 322/346 (93%)
Strand = Plus / Plus
Query: 518 gcaggaacatttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaag 577
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 1 gcaggaacatttggttatcttgcaccagagtatatgcaatttggcagagccaccgagaag 60
Query: 578 accgatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacctacc 637
|| ||||||||||||||||||||| |||||||||||||||| || |||||||| |||||
Sbjct: 61 actgatgtctacagttttggggttttggtacttgaaatacttagtggaaagcggcctact 120
Query: 638 gatgcatccttcattgagaagggattaaacattgttggatggttaaattttctggctggc 697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgcatccttcattgagaagggattaaacattgttggatggttaaattttctggctggt 180
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
|||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 181 gagaaccgggagagggaaattgtcgatctgaactgtgaaggagtgcagactgagacctta 240
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| || ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 241 gatgccctgctttctcttgccaagcaatgtgttagctctttgccagaggagcggccgaca 300
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgt 863
||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 301 atgcacagggtggtacagatgctcgagtcggatgtaattacaccgt 346
>gb|CW346239.1|CW346239 104_849_11488918_116_36216_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488918, DNA
sequence
Length = 732
Score = 484 bits (244), Expect = e-134
Identities = 281/292 (96%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 8 caaaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggag 67
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caaaagacatcctcaagaagctagagactatggatgaagaaaatatcattggagcaggag 401
Query: 68 gcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaa 127
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct: 402 gcttcggaactgtttataaacttgcaatggatgatggcaatgtctttgccttgaaaagaa 461
Query: 128 tagtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattggga 187
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tagtgaaaacaaatgaaggg-ctagatcggttctttgatagagaacttgagatattggga 520
Query: 188 agtgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaa 247
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agtgttaaacatcgctatttggtcaatcttcgtggttattgcaactctccttcatcaaaa 580
Query: 248 cttttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
|||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 581 cttttgatatatgattatcttccaggtggaagcctggatgaagtgcttcatg 632
>gb|CW346240.1|CW346240 104_849_11488918_148_36215_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488918, DNA
sequence
Length = 687
Score = 484 bits (244), Expect = e-134
Identities = 281/292 (96%), Gaps = 1/292 (0%)
Strand = Plus / Minus
Query: 8 caaaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggag 67
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caaaagacatcctcaagaagctagagactatggatgaagaaaatatcattggagcaggag 439
Query: 68 gcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaa 127
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct: 438 gcttcggaactgtttataaacttgcaatggatgatggcaatgtctttgccttgaaaagaa 379
Query: 128 tagtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattggga 187
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tagtgaaaacaaatgaaggg-ctagatcggttctttgatagagaacttgagatattggga 320
Query: 188 agtgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaa 247
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtgttaaacatcgctatttggtcaatcttcgtggttattgcaactctccttcatcaaaa 260
Query: 248 cttttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
|||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 259 cttttgatatatgattatcttccaggtggaagcctggatgaagtgcttcatg 208
>gb|CW273269.1|CW273269 104_745_11403804_148_35717_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403804, DNA
sequence
Length = 713
Score = 430 bits (217), Expect = e-118
Identities = 330/365 (90%), Gaps = 12/365 (3%)
Strand = Plus / Minus
Query: 679 gttaaattttctggctggcgagaaccgggagagggaaatcgtcgatctgaattgtgaagg 738
||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 576 gttaaatattctggctggtgagaaccgggagagggaaattgtcgatctgaactgtgaagg 517
Query: 739 agtgcacaccgagaccttggacgctctgctctctctcgccaagcagtgtgtcagctcttt 798
|||||| || |||||||| || || ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 516 agtgcagactgagaccttagatgccctgctttctcttgccaagcaatgtgttagctcttt 457
Query: 799 gccggaggagcggccgacgatgcacagggtggtacagatgctggagtcggatgtaattac 858
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 456 gccagaggagcggccgacaatgcacagggtggtacagatgctcgagtcggatgtaattac 397
Query: 859 gccgtgccctagcgacttctacgattcagagtagcctcctggacggacaagccacagtgg 918
||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 396 accgtgccctagcgacttctacgattcagagtagtctcctggac---aaagccaca---c 343
Query: 919 tgccgctagtttcccgtggaggcgcattcctttattctttgcagatattgtgtaaatgca 978
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgctgctaatttcccgtggaggcgcattcctttattctttgcagatattgtgtaaatgca 283
Query: 979 ttgccgcggtgtttgtttggtctcctccaatcggctggttcaacgggtgacatttttgcg 1038
||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 282 ttgccgcgg----tgtttggtctc--caaatcggctggttcaacgggtgacatttttgcg 229
Query: 1039 tctgt 1043
|||||
Sbjct: 228 tctgt 224
Score = 105 bits (53), Expect = 9e-021
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttaccagt 1103
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 210 tatctgtcatgctacaagttggctatatcctgatttaataagagagaacttaccagt 154
>gb|CL181676.1|CL181676 104_392_10896904_116_31926_280 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896904, DNA
sequence
Length = 687
Score = 402 bits (203), Expect = e-110
Identities = 288/315 (91%), Gaps = 6/315 (1%)
Strand = Plus / Plus
Query: 679 gttaaattttctggctggcgagaaccgggagagggaaatcgtcgatctgaattgtgaagg 738
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 377 gttaaattttctggctggtgagaaccgggagagggaaattgtcgatctgaactgtgaagg 436
Query: 739 agtgcacaccgagaccttggacgctctgctctctctcgccaagcagtgtgtcagctcttt 798
|||||| || |||||||| || || ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 437 agtgcagactgagaccttagatgccctgctttctcttgccaagcaatgtgttagctcttt 496
Query: 799 gccggaggagcggccgacgatgcacagggtggtacagatgctggagtcggatgtaattac 858
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 497 gccagaggagcggccgacaatgcacagggtggtacagatgctcgagtcggatgtaattac 556
Query: 859 gccgtgccctagcgacttctacgattcagagtagcctcctggacggacaagccacagtgg 918
||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 557 accgtgccctagcgacttctacgattcagagtagtctcctggac---aaagccaca---c 610
Query: 919 tgccgctagtttcccgtggaggcgcattcctttattctttgcagatattgtgtaaatgca 978
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgctgctaatttcccgtggaggcgcattcctttattctttgcagatattgtgtaaatgca 670
Query: 979 ttgccgcggtgtttg 993
|||||||||||||||
Sbjct: 671 ttgccgcggtgtttg 685
Score = 216 bits (109), Expect = 3e-054
Identities = 130/137 (94%)
Strand = Plus / Plus
Query: 543 cagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttc 602
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 110 cagagtatatgcaatttggcagagccaccgagaagactgatgtctacagttttggggttt 169
Query: 603 tggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaagggat 662
|||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||
Sbjct: 170 tggtacttgaaatacttagtggaaagcggcctactgatgcatccttcattgagaagggat 229
Query: 663 taaacattgttggatgg 679
|||||||||||||||||
Sbjct: 230 taaacattgttggatgg 246
>gb|CL181677.1|CL181677 104_392_10896904_148_31925_280 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896904, DNA
sequence
Length = 719
Score = 353 bits (178), Expect = 2e-095
Identities = 279/310 (90%), Gaps = 12/310 (3%)
Strand = Plus / Minus
Query: 734 gaaggagtgcacaccgagaccttggacgctctgctctctctcgccaagcagtgtgtcagc 793
||||||||||| || |||||||| || || ||||| ||||| |||||||| ||||| |||
Sbjct: 719 gaaggagtgcagactgagaccttagatgccctgctttctcttgccaagcaatgtgttagc 660
Query: 794 tctttgccggaggagcggccgacgatgcacagggtggtacagatgctggagtcggatgta 853
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 659 tctttgccagaggagcggccgacaatgcacagggtggtacagatgctcgagtcggatgta 600
Query: 854 attacgccgtgccctagcgacttctacgattcagagtagcctcctggacggacaagccac 913
||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 599 attacaccgtgccctagcgacttctacgattcagagtagtctcctggac---aaagccac 543
Query: 914 agtggtgccgctagtttcccgtggaggcgcattcctttattctttgcagatattgtgtaa 973
| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 a---ctgctgctaatttcccgtggaggcgcattcctttattctttgcagatattgtgtaa 486
Query: 974 atgcattgccgcggtgtttgtttggtctcctccaatcggctggttcaacgggtgacattt 1033
|||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct: 485 atgcattgccgcgg----tgtttggtctc--caaatcggctggttcaacgggtgacattt 432
Query: 1034 ttgcgtctgt 1043
||||||||||
Sbjct: 431 ttgcgtctgt 422
Score = 105 bits (53), Expect = 9e-021
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttaccagt 1103
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 408 tatctgtcatgctacaagttggctatatcctgatttaataagagagaacttaccagt 352
>gb|BF704935.1|BF704935 FM1_46_E06.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 335
Score = 309 bits (156), Expect = 3e-082
Identities = 251/280 (89%), Gaps = 12/280 (4%)
Strand = Plus / Plus
Query: 764 ctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacgatgcac 823
||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1 ctgctttctcttgccaagcaatgtgttagctctttgccagaggagcggccgacaatgcac 60
Query: 824 agggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttctacgat 883
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 61 agggtggtacagatgctcgagtcggatgtaattacaccgtgccctagcgacttttacgat 120
Query: 884 tcagagtagcctcctggacggacaagccacagtggtgccgctagtttcccgtggaggcgc 943
||||||||| ||||||||| |||||||| ||| |||| ||||||||||||||||
Sbjct: 121 tcagagtagtctcctggac---aaagccaca---ctgctgctaatttcccgtggaggcgc 174
Query: 944 attcctttattctttgcagatattgtgtaaatgcattgccgcggtgtttgtttggtctcc 1003
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 175 attcctttattctttgcagatattgtgtaaatgcattgtcgcgg----tgtttggtctc- 229
Query: 1004 tccaatcggctggttcaacgggtgacatttttgcgtctgt 1043
| ||||||||||||||||||||||||||||||| |||||
Sbjct: 230 -caaatcggctggttcaacgggtgacatttttgcttctgt 268
Score = 91.7 bits (46), Expect = 1e-016
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttacc 1100
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 282 tatctgtcgtgctacaagttggctatatcctgatttaataagagagaacttacc 335
>gb|CN141613.1|CN141613 OX1_52_F08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_52_F08_A002 5', mRNA sequence
Length = 384
Score = 283 bits (143), Expect = 2e-074
Identities = 181/191 (94%), Gaps = 2/191 (1%)
Strand = Plus / Plus
Query: 8 caaaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggag 67
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caaaagacatcctcaagaagctagagactatggatgaagaaaatatcattggagcaggag 254
Query: 68 gcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaa 127
||||| |||||||||||||||| ||||||||||||||||||| |||| ||| ||||||
Sbjct: 255 gcttccgaactgtttataaacttgcaatggatgatggcaatgtctttgccttggaaagaa 314
Query: 128 tagtgaaaa-caaatgaagggtctagatcggttctttgatagagaacttgagatattggg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tagtgaaaagcaaatgaaggg-ctagatcggttctttgatagagaacttgagatattggg 373
Query: 187 aagtgttaaac 197
|||||||||||
Sbjct: 374 aagtgttaaac 384
>gb|CW273268.1|CW273268 104_745_11403804_116_35718_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403804, DNA
sequence
Length = 650
Score = 244 bits (123), Expect = 2e-062
Identities = 162/175 (92%)
Strand = Plus / Plus
Query: 371 ttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcgagcaacatcttg 430
|||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1 ttgcatcatgactgttcgcctcgaataatacatcgtgatattaagtcaagcaacatcttg 60
Query: 431 cttgacggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagaggac 490
||||| |||| |||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 61 cttgatggcaattttgaggcccgtgtgtcggactttggacttgcaaagcttttagaggat 120
Query: 491 gaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgccag 545
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 gaagaatcacatattactacaatagttgcaggaacatttggttatcttgcaccag 175
Score = 216 bits (109), Expect = 3e-054
Identities = 130/137 (94%)
Strand = Plus / Plus
Query: 543 cagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttc 602
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 319 cagagtatatgcaatttggcagagccaccgagaagactgatgtctacagttttggggttt 378
Query: 603 tggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaagggat 662
|||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||
Sbjct: 379 tggtacttgaaatacttagtggaaagcggcctactgatgcatccttcattgagaagggat 438
Query: 663 taaacattgttggatgg 679
|||||||||||||||||
Sbjct: 439 taaacattgttggatgg 455
Score = 105 bits (53), Expect = 9e-021
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 679 gttaaattttctggctggcgagaaccgggagagggaaatcgtcgatctgaattgtgaagg 738
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 586 gttaaattttctggctggtgagaaccgggagagggaaattgtcgatctgaactgtgaagg 645
Query: 739 agtgc 743
|||||
Sbjct: 646 agtgc 650
>gb|BE595455.1|BE595455 PI1_55_G04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 521
Score = 216 bits (109), Expect = 3e-054
Identities = 130/137 (94%)
Strand = Plus / Plus
Query: 8 caaaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggag 67
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 caaaagacatcctcaagaagctagagactatggatgaagaaaatatcattggagcacgag 444
Query: 68 gcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaa 127
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct: 445 gcttcggaactgtttataaacttgcaatggatgatggcaatgtctttgccttgaaaagaa 504
Query: 128 tagtgaaaacaaatgaa 144
|||||||||||||||||
Sbjct: 505 tagtgaaaacaaatgaa 521
>gb|CW371767.1|CW371767 fsbb001f047g04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047g04, DNA
sequence
Length = 607
Score = 167 bits (84), Expect = 3e-039
Identities = 109/116 (93%), Gaps = 6/116 (5%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcctttattctttgcagatattgtgtaaatgcattgccgcgg 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcccgtggaggcgcattcctttattctttgcagatattgtgtaaatgcattgccgcgg 60
Query: 988 tgtttgtttggtctcctccaatcggctggttcaacgggtgacatttttgcgtctgt 1043
|||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtttg----gtctcca--aatcggctggttcaacgggtgacatttttgcgtctgt 110
Score = 105 bits (53), Expect = 9e-021
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 1047 tatctgtcatgctacaagttggctatatgctgatttaataagagagaacttaccagt 1103
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 124 tatctgtcatgctacaagttggctatatcctgatttaataagagagaacttaccagt 180
>gb|CL181605.1|CL181605 104_392_10896863_148_31925_239 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896863, DNA
sequence
Length = 733
Score = 97.6 bits (49), Expect = 2e-018
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 1051 tgtcatgctacaagttggctatatgctgatttaataagagagaacttaccagt 1103
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtcatgctacaagttggctatatcctgatttaataagagagaacttaccagt 53
>gb|BF422152.1|BF422152 FM1_12_E03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 562
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 572 gagaagaccgatgtctacagttttggggt 600
||||||| |||||||||||||||||||||
Sbjct: 23 gagaagagcgatgtctacagttttggggt 51
>gb|CX612968.1|CX612968 GABR1_5_B04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_B04_A002 5', mRNA sequence
Length = 623
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 572 gagaagaccgatgtctacagttttggggt 600
||||||| |||||||||||||||||||||
Sbjct: 421 gagaagagcgatgtctacagttttggggt 449
>gb|BH246155.1|BH246155 pSB1773.2 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1773 similar to disease
resistance protein RPM1 (AAD46471), DNA sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tggcaatgtccttgctttgaa 122
|||||||||||||||||||||
Sbjct: 319 tggcaatgtccttgctttgaa 299
>gb|BZ330157.1|BZ330157 hv90d08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv90d08 5', DNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tggcaatgtccttgctttgaa 122
|||||||||||||||||||||
Sbjct: 34 tggcaatgtccttgctttgaa 14
>gb|CW286520.1|CW286520 104_764_11410918_148_35518_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410918, DNA
sequence
Length = 598
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tggcaatgtccttgctttgaa 122
|||||||||||||||||||||
Sbjct: 82 tggcaatgtccttgctttgaa 62
>gb|CW358863.1|CW358863 fsbb001f026d22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f026d22, DNA
sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tggcaatgtccttgctttgaa 122
|||||||||||||||||||||
Sbjct: 239 tggcaatgtccttgctttgaa 219
>gb|CW501035.1|CW501035 fsbb001f296k10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296k10, DNA
sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tggcaatgtccttgctttgaa 122
|||||||||||||||||||||
Sbjct: 287 tggcaatgtccttgctttgaa 267
>gb|BE598992.1|BE598992 PI1_86_A08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.11
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 581 gatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacc 633
||||| |||||||| || || || |||||||||| |||| ||||||||||||
Sbjct: 185 gatgtgtacagtttcggtgtgttgctacttgaaatgctcaccggaaagcgacc 237
>gb|BE599371.1|BE599371 PI1_88_F12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.11
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 581 gatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacc 633
||||| |||||||| || || || |||||||||| |||| ||||||||||||
Sbjct: 190 gatgtgtacagtttcggtgtgttgctacttgaaatgctcaccggaaagcgacc 242
>gb|BM327916.1|BM327916 PIC1_19_A06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 609
Score = 42.1 bits (21), Expect = 0.11
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 581 gatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacc 633
||||| |||||||| || || || |||||||||| |||| ||||||||||||
Sbjct: 90 gatgtgtacagtttcggtgtgttgctacttgaaatgctcaccggaaagcgacc 142
>gb|CW264172.1|CW264172 104_732_11231135_148_35237_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231135, DNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 305 tctgaacagttggattgggatgca 328
|||||| |||||||||||||||||
Sbjct: 57 tctgaatagttggattgggatgca 80
>gb|CW342998.1|CW342998 104_845_11487181_148_36182_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487181, DNA
sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 305 tctgaacagttggattgggatgca 328
|||||| |||||||||||||||||
Sbjct: 143 tctgaatagttggattgggatgca 166
>gb|CW392917.1|CW392917 fsbb001f079m03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079m03, DNA
sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
|||||||| ||||||| ||||||||||| ||||||
Sbjct: 395 catcgtgacgtcaagtccagcaacatcttacttgac 360
>gb|CW436728.1|CW436728 fsbb001f153h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f153h18, DNA
sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 305 tctgaacagttggattgggatgca 328
|||||| |||||||||||||||||
Sbjct: 167 tctgaatagttggattgggatgca 190
>gb|CN126982.1|CN126982 RHOH1_20_G06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_20_G06_A002 3', mRNA sequence
Length = 802
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
|||||||| ||||||| ||||||||||| ||||||
Sbjct: 179 catcgtgacgtcaagtccagcaacatcttacttgac 214
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 273,662
Number of Sequences: 832831
Number of extensions: 273662
Number of successful extensions: 73713
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73612
Number of HSP's gapped (non-prelim): 81
length of query: 1164
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1144
effective length of database: 474,703,049
effective search space: 543060288056
effective search space used: 543060288056
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)