BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG273158.1|BG273158 OV2_27_E09.g1_A002 Ovary 2 (OV2) Sor... 1007 0.0
gb|AW925011.1|AW925011 WS1_74_C09.b1_A002 Water-stressed 1 ... 850 0.0
gb|BG048518.1|BG048518 OV1_14_E09.g2_A002 Ovary 1 (OV1) Sor... 811 0.0
gb|BG052764.1|BG052764 RHIZ2_14_E10.g1_A003 Rhizome2 (RHIZ2... 805 0.0
gb|AW746098.1|AW746098 WS1_39_H03.b1_A002 Water-stressed 1 ... 801 0.0
gb|AW923920.1|AW923920 WS1_30_B03.b1_A002 Water-stressed 1 ... 779 0.0
gb|BI140855.1|BI140855 IP1_39_H05.b1_A002 Immature pannicle... 714 0.0
gb|BG241025.1|BG241025 OV1_37_C06.b1_A002 Ovary 1 (OV1) Sor... 712 0.0
gb|BG240707.1|BG240707 OV1_37_C06.g1_A002 Ovary 1 (OV1) Sor... 710 0.0
gb|BI140856.1|BI140856 IP1_39_H06.b1_A002 Immature pannicle... 704 0.0
gb|BE598987.1|BE598987 PI1_86_A03.g1_A002 Pathogen induced ... 702 0.0
gb|AW747621.1|AW747621 WS1_74_C09.g1_A002 Water-stressed 1 ... 688 0.0
gb|CD424860.1|CD424860 SA1_9_E01.b1_A002 Salicylic acid-tre... 688 0.0
gb|BG947049.1|BG947049 IP1_2_H09.g1_A002 Immature pannicle ... 682 0.0
gb|BG048590.1|BG048590 OV1_14_E09.b1_A002 Ovary 1 (OV1) Sor... 642 0.0
gb|BE599151.1|BE599151 PI1_86_A03.b1_A002 Pathogen induced ... 585 e-165
gb|AW679708.1|AW679708 WS1_30_B03.g1_A002 Water-stressed 1 ... 557 e-157
gb|BE364598.2|BE364598 PI1_15_B06.g1_A002 Pathogen induced ... 551 e-155
gb|AW746132.1|AW746132 WS1_39_H03.g1_A002 Water-stressed 1 ... 547 e-154
gb|BE364817.2|BE364817 PI1_16_D01.g1_A002 Pathogen induced ... 547 e-154
gb|CB929152.1|CB929152 ABA1_40_A09.b1_A012 Abscisic acid-tr... 531 e-149
gb|BG053524.1|BG053524 RHIZ2_10_C06.g1_A003 Rhizome2 (RHIZ2... 379 e-103
gb|CW474172.1|CW474172 fsbb001f229o04k0 Sorghum methylation... 371 e-100
gb|CD225929.1|CD225929 CCC1_42_E11.b1_A007 Callus culture/c... 299 3e-079
gb|CF073438.1|CF073438 FE1_10_B08.b1_A002 Iron-deficient se... 289 3e-076
gb|AW565411.1|AW565411 LG1_343_H08.g1_A002 Light Grown 1 (L... 287 1e-075
gb|AW679016.1|AW679016 WS1_22_D09.b1_A002 Water-stressed 1 ... 285 4e-075
gb|CD206192.1|CD206192 HS1_21_F03.b1_A012 Heat-shocked seed... 283 2e-074
gb|CW474171.1|CW474171 fsbb001f229o04f0 Sorghum methylation... 281 7e-074
gb|CW427101.1|CW427101 fsbb001f138o15k0 Sorghum methylation... 274 2e-071
gb|AW679148.1|AW679148 WS1_22_D09.g1_A002 Water-stressed 1 ... 266 4e-069
gb|BI099220.1|BI099220 IP1_39_H05.g1_A002 Immature pannicle... 202 5e-050
gb|BG947050.1|BG947050 IP1_2_H10.g1_A002 Immature pannicle ... 200 2e-049
gb|BZ333511.1|BZ333511 hx70e08.g1 WGS-SbicolorF (JM107 adap... 188 8e-046
gb|CW255442.1|CW255442 104_720_11226239_116_35402_096 Sorgh... 188 8e-046
gb|BG947130.1|BG947130 IP1_2_H10.b1_A002 Immature pannicle ... 186 3e-045
gb|CL159623.1|CL159623 104_349_10804388_114_31381_212 Sorgh... 172 5e-041
gb|CL159624.1|CL159624 104_349_10804388_116_31382_212 Sorgh... 172 5e-041
gb|CW063072.1|CW063072 104_308_10521699_5_30097 Sorghum met... 172 5e-041
gb|CW196206.1|CW196206 104_620_11181046_116_36812_093 Sorgh... 172 5e-041
gb|CW204053.1|CW204053 104_631_11186336_116_37095_018 Sorgh... 172 5e-041
gb|CW204054.1|CW204054 104_631_11186336_148_37094_018 Sorgh... 172 5e-041
gb|CW368797.1|CW368797 fsbb001f042o18k0 Sorghum methylation... 172 5e-041
gb|BZ625902.1|BZ625902 ih41e06.g1 WGS-SbicolorF (DH5a methy... 165 1e-038
gb|CW385665.1|CW385665 fsbb001f069d17k0 Sorghum methylation... 159 7e-037
gb|CW164951.1|CW164951 104_573_11152250_148_36476_013 Sorgh... 135 1e-029
gb|CW044517.1|CW044517 104_280_10508997_114_30268 Sorghum m... 125 1e-026
gb|CW063071.1|CW063071 104_308_10521699_1_30092 Sorghum met... 103 4e-020
gb|CW040788.1|CW040788 104_274_10506292_114_30470 Sorghum m... 82 1e-013
gb|CW196207.1|CW196207 104_620_11181046_148_36811_093 Sorgh... 78 2e-012
gb|BG947129.1|BG947129 IP1_2_H09.b1_A002 Immature pannicle ... 68 2e-009
gb|CW024913.1|CW024913 104_226_10487851_116_30526 Sorghum m... 44 0.028
gb|CW246739.1|CW246739 104_707_11221463_116_35082_086 Sorgh... 44 0.028
gb|BZ629681.1|BZ629681 ih67g07.g1 WGS-SbicolorF (DH5a methy... 42 0.11
gb|CW428489.1|CW428489 fsbb001f141d12f0 Sorghum methylation... 40 0.44
gb|CW459644.1|CW459644 fsbb001f206h19k0 Sorghum methylation... 40 0.44
gb|CW492489.1|CW492489 fsbb001f282m16f0 Sorghum methylation... 40 0.44
>gb|BG273158.1|BG273158 OV2_27_E09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 1007 bits (508), Expect = 0.0
Identities = 602/632 (95%), Gaps = 1/632 (0%)
Strand = Plus / Minus
Query: 345 gcttctgaatcttttgcataactccagggttcttcaggtgctcctgggccgcccttgggt 404
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 631 gcttctgaatcttctgcataactccggggttcttcaggtgctcctgggctgcccttgggt 572
Query: 405 tctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatct 464
|||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 571 tctcctggaaataatt-agcacctgtcgcatgatagggtcggtaagaatgttctggatct 513
Query: 465 ctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacctc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacctc 453
Query: 525 tgttagccttgttaatttgttcaatgcacctcctaacaccatcaagcagttcctggtttt 584
|||| |||||||| || |||||||| ||||||||||||||||||||||||||| |||| |
Sbjct: 452 tgttggccttgttgatctgttcaatacacctcctaacaccatcaagcagttccgggttgt 393
Query: 585 tcgggtcatgcttcaggccagcctgataggtttccatggccttgtcatattctttcatga 644
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgggtcatgcttcaagccagcctggtaggtttccatggccttgtcatattctttcatga 333
Query: 645 agaattgaattgcacctttccttgtgtaccctttagtgaaggtggggtctagttcaagac 704
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 332 agaattgaattgcacctttccttgtataccctttggtgaaggtggggtctagatcaagac 273
Query: 705 acttctctgcatctttaagaccttcaggcatggctcctaacttggtgtagcaggcagccc 764
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 272 acttctctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcggccc 213
Query: 765 tattgctgtaaaccctaggatcctttgggtttctcttgagagcctccgtgtagtgtttta 824
||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 212 tattgctgtaaaccctaggatcctttgggttcctcctgagagcctctgtgtagtgtttta 153
Query: 825 ttgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctg 884
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 152 ttgcttctgggtatttttgctccttgaagaactcgttacctttctctctctcctcatctg 93
Query: 885 ctaattttggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcat 944
|||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 92 ctaattttggatcataatactcttgttgctccaaatctttctttgctctctcagcctcat 33
Query: 945 tcaactttttaagagtgtctgggttccgatgc 976
| |||| |||||||||||||||||||||||||
Sbjct: 32 ttaactgtttaagagtgtctgggttccgatgc 1
>gb|AW925011.1|AW925011 WS1_74_C09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 589
Score = 850 bits (429), Expect = 0.0
Identities = 510/536 (95%), Gaps = 2/536 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 480
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 479 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 422
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 421 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 362
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 302
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 301 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 242
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 241 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 182
Query: 605 gcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 664
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 gcctggtaggtttccatggccttgtcatattatttcatgaagaattgaattgcacctttc 122
Query: 665 cttgtgtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaaga 724
||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 121 cttgtataccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaaga 62
Query: 725 ccttcaggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccct 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 ccttcaggcatggctcctaacttggtgtagcaggcggccctattgctgtaaaccct 6
>gb|BG048518.1|BG048518 OV1_14_E09.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 811 bits (409), Expect = 0.0
Identities = 484/508 (95%), Gaps = 2/508 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 447
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 446 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 389
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 388 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 329
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 269
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 268 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 209
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 208 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 149
Query: 605 gcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcctggtaggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 89
Query: 665 cttgtgtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaaga 724
||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 88 cttgtataccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaaga 29
Query: 725 ccttcaggcatggctcctaacttggtgt 752
||||||||||||||||||||||||||||
Sbjct: 28 ccttcaggcatggctcctaacttggtgt 1
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 162 aatccaatgttaactgcacttacaatccaa 191
||||||||||||| ||||||||||||||||
Sbjct: 615 aatccaatgttaattgcacttacaatccaa 586
>gb|BG052764.1|BG052764 RHIZ2_14_E10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 617
Score = 805 bits (406), Expect = 0.0
Identities = 484/509 (95%), Gaps = 2/509 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 448
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct: 447 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcaaa 390
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 389 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 330
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 270
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 269 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 210
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 209 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 150
Query: 605 gcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gcctggtaggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 90
Query: 665 cttgtgtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaaga 724
||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 89 cttgtataccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaaga 30
Query: 725 ccttcaggcatggctcctaacttggtgta 753
|||||||||||||||||||||||||||||
Sbjct: 29 ccttcaggcatggctcctaacttggtgta 1
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 167 aatgttaactgcacttacaatcca 190
|||||||| |||||||||||||||
Sbjct: 617 aatgttaattgcacttacaatcca 594
>gb|AW746098.1|AW746098 WS1_39_H03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 508
Score = 801 bits (404), Expect = 0.0
Identities = 478/502 (95%), Gaps = 2/502 (0%)
Strand = Plus / Minus
Query: 289 ggtacaatcgcatcgtgtgcctgatcatctcatttggactatcccagcacttacaagctt 348
||||||||||||||||| | |||||||||||| || |||||||||||||||||||||||
Sbjct: 508 ggtacaatcgcatcgtg--cttgatcatctcatntgaactatcccagcacttacaagctt 451
Query: 349 ctgaatcttttgcataactccagggttcttcaggtgctcctgggccgcccttgggttctc 408
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 450 ctgaatcttctgcataactccggggttcttcaggtgctcctgggctgcccttgggttctc 391
Query: 409 ctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatctctgg 468
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctggaaatcaattagcacctgtcgcatgatagggtcggtaagaatgttctggatctctgg 331
Query: 469 gtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacctctgtt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacctctgtt 271
Query: 529 agccttgttaatttgttcaatgcacctcctaacaccatcaagcagttcctggtttttcgg 588
|||||||| || |||||||| ||||||||||||||||||||||||||| |||| || ||
Sbjct: 270 ggccttgttgatctgttcaatacacctcctaacaccatcaagcagttccgggttgtttgg 211
Query: 589 gtcatgcttcaggccagcctgataggtttccatggccttgtcatattctttcatgaagaa 648
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gtcatgcttcaagccagcctggtaggtttccatggccttgtcatattctttcatgaagaa 151
Query: 649 ttgaattgcacctttccttgtgtaccctttagtgaaggtggggtctagttcaagacactt 708
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 150 ttgaattgcacctttccttgtataccctttggtgaaggtggggtctagatcaagacactt 91
Query: 709 ctctgcatctttaagaccttcaggcatggctcctaacttggtgtagcaggcagccctatt 768
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 90 ctctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcggccctatt 31
Query: 769 gctgtaaaccctaggatccttt 790
||||||||||||||||||||||
Sbjct: 30 gctgtaaaccctaggatccttt 9
>gb|AW923920.1|AW923920 WS1_30_B03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 779 bits (393), Expect = 0.0
Identities = 468/492 (95%), Gaps = 2/492 (0%)
Strand = Plus / Minus
Query: 289 ggtacaatcgcatcgtgtgcctgatcatctcatttggactatcccagcacttacaagctt 348
||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct: 495 ggtacaatcgcatcgtg--cttgatcatctcatttgaactatcccagcacttacaagctt 438
Query: 349 ctgaatcttttgcataactccagggttcttcaggtgctcctgggccgcccttgggttctc 408
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 437 ctgaatcttctgcataactccggggttcttcaggtgctcctgggctgcccttgggttctc 378
Query: 409 ctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatctctgg 468
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctggaaatcaattagcacctgtcgcatgatagggtcggtaagaatgttctggatctctgg 318
Query: 469 gtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacctctgtt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacctctgtt 258
Query: 529 agccttgttaatttgttcaatgcacctcctaacaccatcaagcagttcctggtttttcgg 588
|||||||| || |||||||| ||||||||||||||||||||||||||| |||| || ||
Sbjct: 257 ggccttgttgatctgttcaatacacctcctaacaccatcaagcagttccgggttgtttgg 198
Query: 589 gtcatgcttcaggccagcctgataggtttccatggccttgtcatattctttcatgaagaa 648
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 197 gtcatgcttcaagccagcctggtaggtttccatggccttgtcatattatttcatgaagaa 138
Query: 649 ttgaattgcacctttccttgtgtaccctttagtgaaggtggggtctagttcaagacactt 708
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 137 ttgaattgcacctttccttgtataccctttggtgaaggtggggtctagatcaagacactt 78
Query: 709 ctctgcatctttaagaccttcaggcatggctcctaacttggtgtagcaggcagccctatt 768
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 77 ctctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcggccctatt 18
Query: 769 gctgtaaaccct 780
||||||||||||
Sbjct: 17 gctgtaaaccct 6
>gb|BI140855.1|BI140855 IP1_39_H05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 439
Score = 714 bits (360), Expect = 0.0
Identities = 410/427 (96%)
Strand = Plus / Minus
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 439 accctntggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttcag 380
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttg 791
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 379 gcatggctcctaacttggtgtagcaggcggccctattgctgtaaaccctaggatcctttg 320
Query: 792 ggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttga 851
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggttcctcctgagagcctctgtgtagtgttttattgcttctgggtatttttgctccttga 260
Query: 852 agaactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgtt 911
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 259 agaactcgttacctttctctctctcctcatctgctaattttggatcataatactcttgtt 200
Query: 912 gctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttcc 971
||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 199 gctccaaatctttctttgctctctcagcctcatttaactttttaagagtgtctgggttcc 140
Query: 972 gatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtct 1031
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 139 gatgctcagttagagccttctggaaggtctcgatggcaatatcaaaatccttagaggtct 80
Query: 1032 tagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaat 1091
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tagcaagtttgaccagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaat 20
Query: 1092 cagcacg 1098
|||||||
Sbjct: 19 cagcacg 13
>gb|BG241025.1|BG241025 OV1_37_C06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 526
Score = 712 bits (359), Expect = 0.0
Identities = 412/430 (95%)
Strand = Plus / Minus
Query: 722 agaccttcaggcatggctcctaacttggtgtagcaggcagccctattgctgtaaacccta 781
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 526 agaccttcaggcatggctcctaacttggtgtagcaggcggccctattgctgtaaaccnta 467
Query: 782 ggatcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttt 841
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 466 ggatcctttgggttcctcctgagagcctctgtgtagtgttttattgcttctgggtatttt 407
Query: 842 tgctccttgaagaactcgttgcctttctctctctcctcatctgctaattttggatcatag 901
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgctccttgaagaactcgttacctttctctctctcctcatctgctaattttggatcataa 347
Query: 902 tactcttgttgctccaactcttttttcgctctctcagcctcattcaactttttaagagtg 961
||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 346 tactcttgttgctccaaatctttctttgctctctcagcctcatttaactttttaagagtg 287
Query: 962 tctgggttccgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatcc 1021
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 286 tctgggttccgatgctcagttagagccttctggaaggtctcgatggcaatatcaaaatcc 227
Query: 1022 ttagaggtcttagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatc 1081
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 226 ttagaggtcttagcaagtttgaccagagctgttccttttcttgtcagtgcccttgaaatc 167
Query: 1082 atcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgatg 1141
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct: 166 atcttgaaatcagcacggagctctcttcccctctccacagccttatcgcaatccttgatg 107
Query: 1142 cattcatcgt 1151
||||||||||
Sbjct: 106 cattcatcgt 97
>gb|BG240707.1|BG240707 OV1_37_C06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 710 bits (358), Expect = 0.0
Identities = 427/449 (95%), Gaps = 2/449 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 388
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 387 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 330
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 329 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 270
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 210
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 209 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 150
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 149 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 90
Query: 605 gcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gcctggtaggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 30
Query: 665 cttgtgtaccctttagtgaaggtggggtc 693
||||| |||||||| ||||||||||||||
Sbjct: 29 cttgtataccctttggtgaaggtggggtc 1
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 164 tccaatgttaactgcacttacaatccaa 191
||||||||||| ||||||||||||||||
Sbjct: 554 tccaatgttaattgcacttacaatccaa 527
>gb|BI140856.1|BI140856 IP1_39_H06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 434
Score = 704 bits (355), Expect = 0.0
Identities = 403/419 (96%)
Strand = Plus / Minus
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 431 gtgaaggtggggtctagatcaagacacttctctgcgtctgtaagaccttcaggcatggct 372
Query: 740 cctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctc 799
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 371 cctaacttggtgtagcaggcggccctattgctgtaaaccctaggatcctttgggttcctc 312
Query: 800 ttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcg 859
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgagagcctctgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcg 252
Query: 860 ttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaac 919
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 251 ttacctttctctctctcctcatctgctaattttggatcataatactcttgttgctccaaa 192
Query: 920 tcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctca 979
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 191 tctttctttgctctctcagcctcatttaactttttaagagtgtctgggttccgatgctca 132
Query: 980 gttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagc 1039
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gttagagccttctggaaggtctcgatggcaatatcaaaatccttagaggtcttagcaagt 72
Query: 1040 ttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacg 1098
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ttgaccagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacg 13
>gb|BE598987.1|BE598987 PI1_86_A03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 585
Score = 702 bits (354), Expect = 0.0
Identities = 423/445 (95%), Gaps = 2/445 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 384
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 326
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 325 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 266
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 206
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 205 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 146
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 145 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 86
Query: 605 gcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 gcctggtaggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 26
Query: 665 cttgtgtaccctttagtgaaggtgg 689
||||| |||||||| ||||||||||
Sbjct: 25 cttgtataccctttggtgaaggtgg 1
Score = 79.8 bits (40), Expect = 5e-013
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 129 cctatactcagactcagtgccacaaacatgaataat-ccaatgttaactgcacttacaat 187
|||||||| ||||||||||||||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 585 cctatacttagactcagtgccacaaacacgaacaatcccaatgttaattgcacttacaat 526
Query: 188 ccaa 191
||||
Sbjct: 525 ccaa 522
>gb|AW747621.1|AW747621 WS1_74_C09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 688 bits (347), Expect = 0.0
Identities = 419/442 (94%), Gaps = 2/442 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 381
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 380 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 323
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 322 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 263
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 203
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 202 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 143
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 142 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 83
Query: 605 gcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 664
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 82 gcctggtaggtttccatggccttgtcatattatttcatgaagaattgaattgcacctttc 23
Query: 665 cttgtgtaccctttagtgaagg 686
||||| |||||||| |||||||
Sbjct: 22 cttgtataccctttggtgaagg 1
Score = 91.7 bits (46), Expect = 1e-016
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 115 aaagcaagacggcgcctatactcagactcagtgccacaaacatgaataat-ccaatgtta 173
||||||||||| ||||||||| ||||||||||||||||||| ||| ||| |||||||||
Sbjct: 597 aaagcaagacgttgcctatacttagactcagtgccacaaacacgaacaatcccaatgtta 538
Query: 174 actgcacttacaatccaa 191
| ||||||||||||||||
Sbjct: 537 attgcacttacaatccaa 520
>gb|CD424860.1|CD424860 SA1_9_E01.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_E01_A002 3', mRNA sequence
Length = 605
Score = 688 bits (347), Expect = 0.0
Identities = 413/434 (95%), Gaps = 2/434 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 375
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 374 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 317
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 316 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 257
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 197
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 196 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 137
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 136 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 77
Query: 605 gcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 gcctggtaggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 17
Query: 665 cttgtgtacccttt 678
||||| ||||||||
Sbjct: 16 cttgtatacccttt 3
Score = 103 bits (52), Expect = 4e-020
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 101 agtccagcatcaataaagcaagacggcgcctatactcagactcagtgccacaaacatgaa 160
|||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct: 605 agtctagcatcaagaaagcaagacgttgcctatacttagactcagtgccacaaacacgaa 546
Query: 161 taat-ccaatgttaactgcacttacaatccaa 191
||| |||||||||| ||||||||||||||||
Sbjct: 545 caatcccaatgttaattgcacttacaatccaa 514
>gb|BG947049.1|BG947049 IP1_2_H09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 590
Score = 682 bits (344), Expect = 0.0
Identities = 410/431 (95%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 370
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 369 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 312
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 311 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 252
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 192
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 191 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 132
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 131 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 72
Query: 605 gcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gcctggtaggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttc 12
Query: 665 cttgtgtaccc 675
||||| |||||
Sbjct: 11 cttgtataccc 1
Score = 91.7 bits (46), Expect = 1e-016
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 115 aaagcaagacggcgcctatactcagactcagtgccacaaacatgaataat-ccaatgtta 173
||||||||||| ||||||||| ||||||||||||||||||| ||| ||| |||||||||
Sbjct: 586 aaagcaagacgttgcctatacttagactcagtgccacaaacacgaacaatcccaatgtta 527
Query: 174 actgcacttacaatccaa 191
| ||||||||||||||||
Sbjct: 526 attgcacttacaatccaa 509
>gb|BG048590.1|BG048590 OV1_14_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 484
Score = 642 bits (324), Expect = 0.0
Identities = 372/388 (95%)
Strand = Plus / Minus
Query: 764 ctattgctgtaaaccctaggatcctttgggtttctcttgagagcctccgtgtagtgtttt 823
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct: 484 ctattgctgtaaaccctaggatcctttgggttcctcctgagagcctctgtgtagtgtttt 425
Query: 824 attgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatct 883
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 424 attgcttctgggtatttttgctccttgaagaactcgttacctttctctctctcctcatct 365
Query: 884 gctaattttggatcatagtactcttgttgctccaactcttttttcgctctctcagcctca 943
||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 364 gctaattttggatcataatactcttgttgctccaaatctttctttgctctctcagcctca 305
Query: 944 ttcaactttttaagagtgtctgggttccgatgctcagttagagccttctggtaggtctcg 1003
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 304 tttaactttttaagagtgtctgggttccgatgctcagttagagccttctggaaggtctcg 245
Query: 1004 atggcaatatcaaaatccttagaggtcttagcaagcttgactagagctgttccttttctt 1063
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 244 atggcaatatcaaaatccttagaggtcttagcaagtttgaccagagctgttccttttctt 185
Query: 1064 gtcagtgcccttgaaatcatcttgaaatcagcacgaagttctcttcccctctccacagcc 1123
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 184 gtcagtgcccttgaaatcatcttgaaatcagcacggagctctcttcccctctccacagcc 125
Query: 1124 ttatcacagtccttgatgcattcatcgt 1151
||||| || |||||||||||||||||||
Sbjct: 124 ttatcgcaatccttgatgcattcatcgt 97
>gb|BE599151.1|BE599151 PI1_86_A03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 585 bits (295), Expect = e-165
Identities = 337/351 (96%)
Strand = Plus / Minus
Query: 801 tgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgt 860
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgagagcctctgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgt 429
Query: 861 tgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaact 920
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 428 tacctttctctctctcctcatctgctaattttggatcataatactcttgttgctccaaat 369
Query: 921 cttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcag 980
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 368 ctttctttgctctctcagcctcatttaactttttaagagtgtctgggttccgatgctcag 309
Query: 981 ttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagct 1040
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 308 ttagagccttctggaaggtctcgatggcaatatcaaaatccttagaggtcttagcaagtt 249
Query: 1041 tgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaa 1100
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 248 tgaccagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgga 189
Query: 1101 gttctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 188 gctctcttcccctctccacagccttatcgcaatccttgatgcattcatcgt 138
>gb|AW679708.1|AW679708 WS1_30_B03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 557 bits (281), Expect = e-157
Identities = 341/360 (94%), Gaps = 2/360 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 299
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 298 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 241
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 240 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 181
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 121
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 120 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 61
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 60 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 1
Score = 107 bits (54), Expect = 2e-021
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 99 aaagtccagcatcaataaagcaagacggcgcctatactcagactcagtgccacaaacatg 158
|||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 531 aaagtctagcatcaaaaaagcaagacgttgcctatacttagactcagtgccacaaacacg 472
Query: 159 aataat-ccaatgttaactgcacttacaatccaa 191
|| ||| |||||||||| ||||||||||||||||
Sbjct: 471 aacaatcccaatgttaattgcacttacaatccaa 438
>gb|BE364598.2|BE364598 PI1_15_B06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 532
Score = 551 bits (278), Expect = e-155
Identities = 341/361 (94%), Gaps = 2/361 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 300
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 299 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 242
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 241 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 182
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 122
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 121 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 62
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcca 604
||||| ||||||||||||| ||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 61 tcaatacacctcctaacacaatcaagcagttccgggttgtttgggtcatgcttcaagcca 2
Query: 605 g 605
|
Sbjct: 1 g 1
Score = 107 bits (54), Expect = 2e-021
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 99 aaagtccagcatcaataaagcaagacggcgcctatactcagactcagtgccacaaacatg 158
|||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 532 aaagtctagcatcaagaaagcaagacgttgcctatacttagactcagtgccacaaacacg 473
Query: 159 aataat-ccaatgttaactgcacttacaatccaa 191
|| ||| |||||||||| ||||||||||||||||
Sbjct: 472 aacaatcccaatgttaattgcacttacaatccaa 439
>gb|AW746132.1|AW746132 WS1_39_H03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 512
Score = 547 bits (276), Expect = e-154
Identities = 336/355 (94%), Gaps = 2/355 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 297
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 296 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 239
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| |||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 238 actccggggttcttcaagtgctcctgggctgcccttgggttctcctggaaatcaattagc 179
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 119
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 118 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 59
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttca 599
||||| ||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct: 58 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttca 4
Score = 73.8 bits (37), Expect = 3e-011
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 128 gcctatactcagactcagtgccacaaacatgaataat-ccaatgttaactgcacttacaa 186
||||||||| | ||||||||||||||||| ||| ||| |||||||||| |||||||||||
Sbjct: 499 gcctatacttaaactcagtgccacaaacacgaacaatcccaatgttaattgcacttacaa 440
Query: 187 tccaa 191
|||||
Sbjct: 439 tccaa 435
>gb|BE364817.2|BE364817 PI1_16_D01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 547 bits (276), Expect = e-154
Identities = 336/355 (94%), Gaps = 2/355 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 295
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 294 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 237
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 236 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 177
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 117
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 116 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 57
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttca 599
||||| ||||||||||||| ||||||||||||| |||| || |||||||||||||
Sbjct: 56 tcaatacacctcctaacacaatcaagcagttccgggttgtttgggtcatgcttca 2
Score = 107 bits (54), Expect = 2e-021
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 99 aaagtccagcatcaataaagcaagacggcgcctatactcagactcagtgccacaaacatg 158
|||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 527 aaagtctagcatcaagaaagcaagacgttgcctatacttagactcagtgccacaaacacg 468
Query: 159 aataat-ccaatgttaactgcacttacaatccaa 191
|| ||| |||||||||| ||||||||||||||||
Sbjct: 467 aacaatcccaatgttaattgcacttacaatccaa 434
>gb|CB929152.1|CB929152 ABA1_40_A09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_40_A09_A012 3', mRNA sequence
Length = 500
Score = 531 bits (268), Expect = e-149
Identities = 334/355 (94%), Gaps = 2/355 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 294
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 293 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 236
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct: 235 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattaac 176
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 175 acctgtcccatgatagggtcggtaaaaatgttctggatctctggggcttgcatagctttg 116
Query: 485 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgt 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 115 ttctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgt 56
Query: 545 tcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttca 599
||||| ||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct: 55 tcaatacacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttca 1
Score = 73.8 bits (37), Expect = 3e-011
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 128 gcctatactcagactcagtgccacaaacatgaataat-ccaatgttaactgcacttacaa 186
||||||||| | ||||||||||||||||| ||| ||| |||||||||| |||||||||||
Sbjct: 498 gcctatacttaaactcagtgccacaaacacgaacaatcccaatgttaattgcacttacaa 439
Query: 187 tccaa 191
|||||
Sbjct: 438 tccaa 434
>gb|BG053524.1|BG053524 RHIZ2_10_C06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 455
Score = 379 bits (191), Expect = e-103
Identities = 238/253 (94%), Gaps = 2/253 (0%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgg 192
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct: 191 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcaaa 134
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct: 133 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattanc 74
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 73 acctgtcgcatgatagggtcggtaaaaatgttctggatctctgggtcttgcatagctttg 14
Query: 485 ttctgtctttctt 497
|||||||||||||
Sbjct: 13 ttctgtctttctt 1
Score = 109 bits (55), Expect = 6e-022
Identities = 86/95 (90%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 98 caaagtccagcatcaataaagcaagacggcgcctatactcagactcagtgccacaaacat 157
||||||| |||||||| ||||||||||| ||||||||| | |||||||||||||||||
Sbjct: 431 caaagtctagcatcaaaaaagcaagacgttgcctatacttaaactcagtgccacaaacac 372
Query: 158 gaataat-ccaatgttaactgcacttacaatccaa 191
||||||| |||||||||| ||||||||||||||||
Sbjct: 371 gaataatcccaatgttaattgcacttacaatccaa 337
>gb|CW474172.1|CW474172 fsbb001f229o04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229o04, DNA
sequence
Length = 611
Score = 371 bits (187), Expect = e-100
Identities = 217/227 (95%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
|||||||||||||||||||||||||| |||| || ||||||||||||| ||||||||| |
Sbjct: 379 acctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggt 320
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtat 260
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 259 accctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttcag 200
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgtaaacc 778
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 199 gcatggctcctaacttggtgtagcaggcggccctattgctgtaaacc 153
Score = 105 bits (53), Expect = 9e-021
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttc 546
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 538 ctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttc 479
Query: 547 aatgcacct 555
||| |||||
Sbjct: 478 aatacacct 470
>gb|CD225929.1|CD225929 CCC1_42_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_E11_A007 3', mRNA sequence
Length = 642
Score = 299 bits (151), Expect = 3e-079
Identities = 406/491 (82%)
Strand = Plus / Minus
Query: 326 actatcccagcacttacaagcttctgaatcttttgcataactccagggttcttcaggtgc 385
|||||||| || || || |||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 493 actatccctgcgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgc 434
Query: 386 tcctgggccgcccttgggttctcctggaaatcatttagcacctgtctcatgatagggtcg 445
||||||| |||| ||||||||||| |||||| | | ||||| | |||||| || ||
Sbjct: 433 gcctgggcagcccgagggttctcctgcaaatcagtcaaaacctgccgcatgatcggatca 374
Query: 446 gtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcg 505
||||| ||||||||||| || ||||| ||||| |||||||||||||| |||| || |||
Sbjct: 373 gtaaggatgttctggatttcagggtcctgcatggctttgttctgtctctctttcagttcc 314
Query: 506 tcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctcctaacacca 565
|||| || | ||| || ||| | |||||||| || ||||||| |||||||| ||||||
Sbjct: 313 tcctcgctgagttcgcccctgctcgccttgttgatctgttcaacacacctccttacacca 254
Query: 566 tcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttccatggcc 625
||||| | ||||||||||||||||||||||| | |||||| ||||| ||||||| ||
Sbjct: 253 tcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttccagcgct 194
Query: 626 ttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctttagtgaag 685
|||||||||||||||||||| ||||| || ||||||||||||||||| || || | |||
Sbjct: 193 ttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatcccttggagaat 134
Query: 686 gtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggctcctaac 745
|||| ||||| |||| |||||||| |||||||| | ||||||||| | || || | |
Sbjct: 133 gtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcccccagc 74
Query: 746 ttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctcttgaga 805
|||||||| |||||||||||||||||||| ||||| || || || ||||||||| |||||
Sbjct: 73 ttggtgtaacaggcagccctattgctgtatacccttgggtctttggggtttctcctgaga 14
Query: 806 gcctccgtgta 816
|| || |||||
Sbjct: 13 gcttcagtgta 3
>gb|CF073438.1|CF073438 FE1_10_B08.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_B08_A002 3', mRNA sequence
Length = 633
Score = 289 bits (146), Expect = 3e-076
Identities = 392/474 (82%)
Strand = Plus / Minus
Query: 326 actatcccagcacttacaagcttctgaatcttttgcataactccagggttcttcaggtgc 385
|||||||| || || || |||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 477 actatccctgcgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgc 418
Query: 386 tcctgggccgcccttgggttctcctggaaatcatttagcacctgtctcatgatagggtcg 445
||||||| |||| ||||||||||| |||||| | | ||||| | |||||| || ||
Sbjct: 417 gcctgggcagcccgagggttctcctgcaaatcagtcaaaacctgccgcatgatcggatca 358
Query: 446 gtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcg 505
||||| ||||||||||| || ||||| ||||| |||||||||||||| |||| || |||
Sbjct: 357 gtaaggatgttctggatttcagggtcctgcatggctttgttctgtctctctttcagttcc 298
Query: 506 tcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctcctaacacca 565
|||| || | ||| || ||| | |||||||| || ||||||| |||||||| ||||||
Sbjct: 297 tcctcgctgagttcgcccctgctcgccttgttgatctgttcaacacacctccttacacca 238
Query: 566 tcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttccatggcc 625
||||| | ||||||||||||||||||||||| | |||||| ||||| ||||||| ||
Sbjct: 237 tcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttccagcgct 178
Query: 626 ttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctttagtgaag 685
|||||||||||||||||||| ||||| || ||||||||||||||||| || || | |||
Sbjct: 177 ttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatcccttggagaat 118
Query: 686 gtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggctcctaac 745
|||| ||||| |||| |||||||| |||||||| | ||||||||| | || || | |
Sbjct: 117 gtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcccccagc 58
Query: 746 ttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctc 799
|||||||| |||||||||||||||||||| ||||| || || || |||||||||
Sbjct: 57 ttggtgtaacaggcagccctattgctgtatacccttgggtctttggggtttctc 4
>gb|AW565411.1|AW565411 LG1_343_H08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 400
Score = 287 bits (145), Expect = 1e-075
Identities = 211/232 (90%), Gaps = 2/232 (0%)
Strand = Plus / Minus
Query: 254 aactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgtgtgcctgat 313
||||||||||||||||| || ||||| ||||||| ||| ||||||||||| | | ||||
Sbjct: 230 aactaacaaagccaagcccaggggacaaacaagcgggtccaatcgcatcggg--cttgat 173
Query: 314 catctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccaggg 373
||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 172 catttcatttgaactatcccagcacttacaagcttttgaattttttgcataactccgggg 113
Query: 374 ttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctc 433
|| |||||| |||||||||| |||||||||||||||||||||||| ||| |||||||| |
Sbjct: 112 tttttcaggggctcctgggctgcccttgggttctcctggaaatcaattaccacctgtcgc 53
Query: 434 atgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgt 485
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 52 atgatagggtcggtaaaaatgttctggatctctgggtcttgcatagctttgt 1
Score = 44.1 bits (22), Expect = 0.028
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 115 aaagcaagacggcgcctatactcagactcagtgccacaaacatgaataatcc-aatgtta 173
||||||||||| |||| | || | |||||| |||||||||| || ||||| |||||||
Sbjct: 396 aaagcaagacgttgccttttcttaaactcagggccacaaacacaaacaatcccaatgtta 337
Query: 174 actgcacttacaatccaa 191
| ||| ||||||||||||
Sbjct: 336 attgcccttacaatccaa 319
>gb|AW679016.1|AW679016 WS1_22_D09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 200
Score = 285 bits (144), Expect = 4e-075
Identities = 180/192 (93%)
Strand = Plus / Minus
Query: 532 cttgttaatttgttcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtc 591
|||||| || |||||||| ||||||||||||||||||||||||||| |||| || |||||
Sbjct: 200 cttgttgatctgttcaatacacctcctaacaccatcaagcagttccgggttgtttgggtc 141
Query: 592 atgcttcaggccagcctgataggtttccatggccttgtcatattctttcatgaagaattg 651
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atgcttcaagccagcctggtaggtttccatggccttgtcatattctttcatgaagaattg 81
Query: 652 aattgcacctttccttgtgtaccctttagtgaaggtggggtctagttcaagacacttctc 711
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 80 aattgcacctttccttgtataccctttggtgaaggtggggtctagatcaagacacttctc 21
Query: 712 tgcatctttaag 723
||| ||||||||
Sbjct: 20 tgcgtctttaag 9
>gb|CD206192.1|CD206192 HS1_21_F03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_F03_A012 3', mRNA sequence
Length = 623
Score = 283 bits (143), Expect = 2e-074
Identities = 377/455 (82%)
Strand = Plus / Minus
Query: 326 actatcccagcacttacaagcttctgaatcttttgcataactccagggttcttcaggtgc 385
|||||||| || || || |||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 465 actatccctgcgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgc 406
Query: 386 tcctgggccgcccttgggttctcctggaaatcatttagcacctgtctcatgatagggtcg 445
||||||| |||| ||||||||||| |||||| | | ||||| | |||||| || ||
Sbjct: 405 gcctgggcagcccgagggttctcctgcaaatcagtcaaaacctgccgcatgatcggatca 346
Query: 446 gtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcg 505
||||| ||||||||||| || ||||| ||||| |||||||||||||| |||| || |||
Sbjct: 345 gtaaggatgttctggatttcagggtcctgcatggctttgttctgtctctctttcagttcc 286
Query: 506 tcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctcctaacacca 565
|||| || | ||| || ||| | |||||||| || ||||||| |||||||| ||||||
Sbjct: 285 tcctcgctgagttcgcccctgctcgccttgttgatctgttcaacacacctccttacacca 226
Query: 566 tcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttccatggcc 625
||||| | ||||||||||||||||||||||| | |||||| ||||| ||||||| ||
Sbjct: 225 tcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttccagcgct 166
Query: 626 ttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctttagtgaag 685
|||||||||||||||||||| ||||| || ||||||||||||||||| || || | |||
Sbjct: 165 ttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatcccttggagaat 106
Query: 686 gtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggctcctaac 745
|||| ||||| |||| |||||||| |||||||| | ||||||||| | || || | |
Sbjct: 105 gtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcccccagc 46
Query: 746 ttggtgtagcaggcagccctattgctgtaaaccct 780
|||||||| |||||||||||||||||||| |||||
Sbjct: 45 ttggtgtaacaggcagccctattgctgtataccct 11
>gb|CW474171.1|CW474171 fsbb001f229o04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229o04, DNA
sequence
Length = 670
Score = 281 bits (142), Expect = 7e-074
Identities = 175/185 (94%), Gaps = 2/185 (1%)
Strand = Plus / Plus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 305 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 362
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 363 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 422
Query: 425 acctg 429
|||||
Sbjct: 423 acctg 427
Score = 121 bits (61), Expect = 2e-025
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 566
Query: 485 ttctg 489
|||||
Sbjct: 567 ttctg 571
Score = 107 bits (54), Expect = 2e-021
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 99 aaagtccagcatcaataaagcaagacggcgcctatactcagactcagtgccacaaacatg 158
|||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 72 aaagtctagcatcaagaaagcaagacgttgcctatacttagactcagtgccacaaacacg 131
Query: 159 aataat-ccaatgttaactgcacttacaatccaa 191
|| ||| |||||||||| ||||||||||||||||
Sbjct: 132 aacaatcccaatgttaattgcacttacaatccaa 165
>gb|CW427101.1|CW427101 fsbb001f138o15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f138o15, DNA
sequence
Length = 596
Score = 274 bits (138), Expect = 2e-071
Identities = 174/185 (94%), Gaps = 2/185 (1%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 515 gggcatgtgaactaacaaagccaagcccaagggacgaacaagcaggtacaatcgcatcgt 456
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 455 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 398
Query: 365 actccagggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagc 424
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 397 actccggggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagc 338
Query: 425 acctg 429
|||||
Sbjct: 337 acctg 333
Score = 121 bits (61), Expect = 2e-025
Identities = 64/65 (98%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 194
Query: 485 ttctg 489
|||||
Sbjct: 193 ttctg 189
Score = 105 bits (53), Expect = 9e-021
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttc 546
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 99 ctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttc 40
Query: 547 aatgcacct 555
||| |||||
Sbjct: 39 aatacacct 31
>gb|AW679148.1|AW679148 WS1_22_D09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 538
Score = 266 bits (134), Expect = 4e-069
Identities = 149/154 (96%)
Strand = Plus / Minus
Query: 396 cccttgggttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgt 455
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 256 cccttgggttctcctggaaatcaattagcacctgtcgcatgatagggtcggtaagaatgt 197
Query: 456 tctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctgactta 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctgactta 137
Query: 516 tttcacctctgttagccttgttaatttgttcaat 549
||||||||||||| |||||||| || ||||||||
Sbjct: 136 tttcacctctgttggccttgttgatctgttcaat 103
Score = 186 bits (94), Expect = 3e-045
Identities = 118/125 (94%), Gaps = 2/125 (1%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatc-- 320
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
|||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 gtgcttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 260
Query: 365 actcc 369
|||||
Sbjct: 259 actcc 255
Score = 165 bits (83), Expect = 1e-038
Identities = 95/99 (95%)
Strand = Plus / Minus
Query: 587 gggtcatgcttcaggccagcctgataggtttccatggccttgtcatattctttcatgaag 646
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 99 gggtcatgcttcaagccagcctggtaggtttccatggccttgtcatattctttcatgaag 40
Query: 647 aattgaattgcacctttccttgtgtaccctttagtgaag 685
||||||||||||||||||||||| |||||||| ||||||
Sbjct: 39 aattgaattgcacctttccttgtataccctttggtgaag 1
Score = 103 bits (52), Expect = 4e-020
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 101 agtccagcatcaataaagcaagacggcgcctatactcagactcagtgccacaaacatgaa 160
|||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct: 522 agtctagcatcaagaaagcaagacgttgcctatacttagactcagtgccacaaacacgaa 463
Query: 161 taat-ccaatgttaactgcacttacaatccaa 191
||| |||||||||| ||||||||||||||||
Sbjct: 462 caatcccaatgttaattgcacttacaatccaa 431
>gb|BI099220.1|BI099220 IP1_39_H05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 310
Score = 202 bits (102), Expect = 5e-050
Identities = 129/137 (94%), Gaps = 2/137 (1%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 76
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 75 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 18
Query: 365 actccagggttcttcag 381
||||| |||||||||||
Sbjct: 17 actccggggttcttcag 1
Score = 107 bits (54), Expect = 2e-021
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 99 aaagtccagcatcaataaagcaagacggcgcctatactcagactcagtgccacaaacatg 158
|||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 308 aaagtctagcatcaagaaagcaagacgttgcctatacttagactcagtgccacaaacacg 249
Query: 159 aataat-ccaatgttaactgcacttacaatccaa 191
|| ||| |||||||||| ||||||||||||||||
Sbjct: 248 aacaatcccaatgttaattgcacttacaatccaa 215
>gb|BG947050.1|BG947050 IP1_2_H10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 299
Score = 200 bits (101), Expect = 2e-049
Identities = 131/140 (93%), Gaps = 2/140 (1%)
Strand = Plus / Minus
Query: 245 gggcacgttaactaacaaagccaagcacaagggacgaacaagcaggtacaatcgcatcgt 304
||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 138 gggcatgtgaactaacaaagccaagcacaagggacgaacaagcaggaacaatcgcatcgt 79
Query: 305 gtgcctgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcata 364
| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 78 g--cttgatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcata 21
Query: 365 actccagggttcttcaggtg 384
||||| ||||||||||||||
Sbjct: 20 actccggggttcttcaggtg 1
Score = 75.8 bits (38), Expect = 8e-012
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 115 aaagcaagacggcgcctatactcagactcagtgccacaaacatgaataat-ccaatgtta 173
||||||| ||| ||||||||| | ||||||||||||||||| ||| ||| |||||||||
Sbjct: 295 aaagcaaaacgttgcctatacttaaactcagtgccacaaacacgaacaatcccaatgtta 236
Query: 174 actgcacttacaatccaa 191
| ||||||||||||||||
Sbjct: 235 attgcacttacaatccaa 218
>gb|BZ333511.1|BZ333511 hx70e08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx70e08 5', DNA sequence
Length = 612
Score = 188 bits (95), Expect = 8e-046
Identities = 113/119 (94%)
Strand = Plus / Minus
Query: 1033 agcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatc 1092
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agcaagtttgaccagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatc 553
Query: 1093 agcacgaagttctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|||||| || |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 552 agcacggagctctcttcccctctccacagccttatcgcaatccttgatgcattcatcgt 494
>gb|CW255442.1|CW255442 104_720_11226239_116_35402_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226239, DNA
sequence
Length = 659
Score = 188 bits (95), Expect = 8e-046
Identities = 110/115 (95%)
Strand = Plus / Plus
Query: 664 ccttgtgtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaag 723
|||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 1 ccttgtataccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaag 60
Query: 724 accttcaggcatggctcctaacttggtgtagcaggcagccctattgctgtaaacc 778
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 accttcaggcatggctcctaacttggtgtagcaggcggccctattgctgtaaacc 115
>gb|BG947130.1|BG947130 IP1_2_H10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 419
Score = 186 bits (94), Expect = 3e-045
Identities = 112/118 (94%)
Strand = Plus / Minus
Query: 1034 gcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatca 1093
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcaagtttgaccagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatca 360
Query: 1094 gcacgaagttctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
||||| || |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 359 gcacggagctctcttcccctctccacagccttatcgcaatccttgatgcattcatcgt 302
>gb|CL159623.1|CL159623 104_349_10804388_114_31381_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804388, DNA
sequence
Length = 787
Score = 172 bits (87), Expect = 5e-041
Identities = 189/223 (84%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||| ||||||||||| | ||||||||||||||||||||||| | |||||| ||||
Sbjct: 721 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 662
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| ||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 661 aagtttccagcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgt 602
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| |||| ||||| |||| |||||||| |||||||| | ||||||||
Sbjct: 601 atcccttggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcag 542
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
| | || || | ||||||||| ||||||||||||||||||||
Sbjct: 541 gaagcgcccccagcttggtgtaacaggcagccctattgctgta 499
>gb|CL159624.1|CL159624 104_349_10804388_116_31382_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804388, DNA
sequence
Length = 780
Score = 172 bits (87), Expect = 5e-041
Identities = 189/223 (84%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||| ||||||||||| | ||||||||||||||||||||||| | |||||| ||||
Sbjct: 300 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 359
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| ||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 360 aagtttccagcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgt 419
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| |||| ||||| |||| |||||||| |||||||| | ||||||||
Sbjct: 420 atcccttggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcag 479
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
| | || || | ||||||||| ||||||||||||||||||||
Sbjct: 480 gaagcgcccccagcttggtgtaacaggcagccctattgctgta 522
>gb|CW063072.1|CW063072 104_308_10521699_5_30097 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521699, DNA
sequence
Length = 543
Score = 172 bits (87), Expect = 5e-041
Identities = 189/223 (84%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||| ||||||||||| | ||||||||||||||||||||||| | |||||| ||||
Sbjct: 516 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 457
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| ||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 456 aagtttccagcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgt 397
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| |||| ||||| |||| |||||||| |||||||| | ||||||||
Sbjct: 396 atcccttggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcag 337
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
| | || || | ||||||||| ||||||||||||||||||||
Sbjct: 336 gaagcgcccccagcttggtgtaacaggcagccctattgctgta 294
>gb|CW196206.1|CW196206 104_620_11181046_116_36812_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181046, DNA
sequence
Length = 749
Score = 172 bits (87), Expect = 5e-041
Identities = 189/223 (84%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||| ||||||||||| | ||||||||||||||||||||||| | |||||| ||||
Sbjct: 259 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 318
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| ||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 319 aagtttccagcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgt 378
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| |||| ||||| |||| |||||||| |||||||| | ||||||||
Sbjct: 379 atcccttggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcag 438
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
| | || || | ||||||||| ||||||||||||||||||||
Sbjct: 439 gaagcgcccccagcttggtgtaacaggcagccctattgctgta 481
>gb|CW204053.1|CW204053 104_631_11186336_116_37095_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186336, DNA
sequence
Length = 682
Score = 172 bits (87), Expect = 5e-041
Identities = 189/223 (84%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||| ||||||||||| | ||||||||||||||||||||||| | |||||| ||||
Sbjct: 66 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 125
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| ||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 126 aagtttccagcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgt 185
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| |||| ||||| |||| |||||||| |||||||| | ||||||||
Sbjct: 186 atcccttggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcag 245
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
| | || || | ||||||||| ||||||||||||||||||||
Sbjct: 246 gaagcgcccccagcttggtgtaacaggcagccctattgctgta 288
>gb|CW204054.1|CW204054 104_631_11186336_148_37094_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186336, DNA
sequence
Length = 679
Score = 172 bits (87), Expect = 5e-041
Identities = 237/287 (82%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
||||| ||||||||||| || || | | |||| |||||||||||||||||||||| |||
Sbjct: 288 cctttttctctctcctcgtcagcaattcttgggtcatagtactcttgttgctccagctcc 229
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || |||| || || ||||| | ||||| || || |||||||||||||||||||||
Sbjct: 228 ttctttgctcgttctgcatcatttagttttttcagggtatctgggttccgatgctcagtt 169
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
| ||||||||| | ||||| |||||| |||| | || | || | |||||||| |||
Sbjct: 168 aacgccttctggaaagtctcaatggcagcatcatagtcttgtgatgatttagcaagtttg 109
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||||||||| || |||||||| || |||||||||||||||||| | |||
Sbjct: 108 gcaagagcagttccttttctggtgagtgccctcgagatcatcttgaaatcagcatgtagt 49
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 48 tcccttcctctctcaacagccttatcacagtccttaatgcattcatc 2
>gb|CW368797.1|CW368797 fsbb001f042o18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042o18, DNA
sequence
Length = 717
Score = 172 bits (87), Expect = 5e-041
Identities = 237/287 (82%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
||||| ||||||||||| || || | | |||| |||||||||||||||||||||| |||
Sbjct: 358 cctttttctctctcctcgtcagcaattcttgggtcatagtactcttgttgctccagctcc 299
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || |||| || || ||||| | ||||| || || |||||||||||||||||||||
Sbjct: 298 ttctttgctcgttctgcatcatttagttttttcagggtatctgggttccgatgctcagtt 239
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
| ||||||||| | ||||| |||||| |||| | || | || | |||||||| |||
Sbjct: 238 aacgccttctggaaagtctcaatggcagcatcatagtcttgtgatgatttagcaagtttg 179
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||||||||| || |||||||| || |||||||||||||||||| | |||
Sbjct: 178 gcaagagcagttccttttctggtgagtgccctcgagatcatcttgaaatcagcatgtagt 119
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 118 tcccttcctctctcaacagccttatcacagtccttaatgcattcatc 72
>gb|BZ625902.1|BZ625902 ih41e06.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih41e06 5', DNA sequence
Length = 712
Score = 165 bits (83), Expect = 1e-038
Identities = 188/223 (84%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||| ||||||||||| | ||||||||||||||||||||||| | |||||| ||||
Sbjct: 494 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 435
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| ||||||| || ||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 434 aagtttccagcgctttgtcatattctttcatgactaattggatagcacctttccttgtgt 375
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| |||| ||||| |||| |||||||| |||||||| | ||||||||
Sbjct: 374 atcccttggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcag 315
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
| | || || | ||||||||| ||||||||||||||||||||
Sbjct: 314 gaagcgcccccagcttggtgtaacaggcagccctattgctgta 272
>gb|CW385665.1|CW385665 fsbb001f069d17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f069d17, DNA
sequence
Length = 777
Score = 159 bits (80), Expect = 7e-037
Identities = 170/200 (85%)
Strand = Plus / Plus
Query: 575 tcctggtttttcgggtcatgcttcaggccagcctgataggtttccatggccttgtcatat 634
||||||||||||||||||||||| | |||||| ||||| ||||||| || |||||||||
Sbjct: 44 tcctggtttttcgggtcatgctttaagccagcttgataagtttccagcgctttgtcatat 103
Query: 635 tctttcatgaagaattgaattgcacctttccttgtgtaccctttagtgaaggtggggtct 694
||||||||||| ||||| || ||||||||||||||||| || || | ||| |||| |||
Sbjct: 104 tctttcatgaaaaattggatagcacctttccttgtgtatcccttggagaatgtggaatct 163
Query: 695 agttcaagacacttctctgcatctttaagaccttcaggcatggctcctaacttggtgtag 754
|| |||| |||||||| |||||||| | ||||||||| | || || | |||||||||
Sbjct: 164 agctcaatgcacttctcagcatctttcaaaccttcaggaagcgcccccagcttggtgtaa 223
Query: 755 caggcagccctattgctgta 774
||||||||||||||||||||
Sbjct: 224 caggcagccctattgctgta 243
>gb|CW164951.1|CW164951 104_573_11152250_148_36476_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152250, DNA
sequence
Length = 677
Score = 135 bits (68), Expect = 1e-029
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 962 tctgggttccgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatcc 1021
||||||||||| |||||||||| ||||||||| | ||||| |||||| |||| | ||
Sbjct: 42 tctgggttccggtgctcagttaacgccttctggaaagtctcaatggcagcatcatagtct 101
Query: 1022 ttagaggtcttagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatc 1081
| || | |||||||| ||| | ||||| ||||||||||| || |||||||| || |||
Sbjct: 102 tgcgatgatttagcaagtttggcaagagcagttccttttctggtgagtgccctcgagatc 161
Query: 1082 atcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgatg 1141
||||||||||||||| | ||||| ||||| ||||| |||||||||||||||||||| |||
Sbjct: 162 atcttgaaatcagcatgtagttcccttcctctctcaacagccttatcacagtccttaatg 221
Query: 1142 cattcatc 1149
||||||||
Sbjct: 222 cattcatc 229
>gb|CW044517.1|CW044517 104_280_10508997_114_30268 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508997, DNA
sequence
Length = 586
Score = 125 bits (63), Expect = 1e-026
Identities = 105/119 (88%)
Strand = Plus / Plus
Query: 1031 ttagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaa 1090
|||||||| ||| | ||||| ||||||||||| || |||||||| || ||||||||||||
Sbjct: 20 ttagcaagtttggcaagagcagttccttttctggtgagtgccctcgagatcatcttgaaa 79
Query: 1091 tcagcacgaagttctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|||||| | ||||| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 80 tcagcatgtagttcccttcctctctcaacagccttatcacagtccttaatgcattcatc 138
>gb|CW063071.1|CW063071 104_308_10521699_1_30092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521699, DNA
sequence
Length = 638
Score = 103 bits (52), Expect = 4e-020
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||| ||||||||||| | ||||||||||||||||||||||| | |||||| ||||
Sbjct: 535 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 594
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattg 651
| ||||||| || |||||||||||||||||||| |||||
Sbjct: 595 aagtttccagcgctttgtcatattctttcatgaaaaattg 634
Score = 81.8 bits (41), Expect = 1e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 326 actatcccagcacttacaagcttctgaatcttttgcataactccagggttcttcaggtgc 385
|||||||| || || || |||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 19 actatccctgcgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgc 78
Query: 386 tcctgggccgcccttgggttctcctggaaatca 418
||||||| |||| ||||||||||| ||||||
Sbjct: 79 gcctgggcagcccgagggttctcctgcaaatca 111
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttct 488
|||||| || || ||||| ||||||||||| || ||||| ||||| ||||||||||
Sbjct: 214 catgatcggatcagtaaggatgttctggatttcagggtcctgcatggctttgttct 269
>gb|CW040788.1|CW040788 104_274_10506292_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506292, DNA
sequence
Length = 717
Score = 81.8 bits (41), Expect = 1e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 326 actatcccagcacttacaagcttctgaatcttttgcataactccagggttcttcaggtgc 385
|||||||| || || || |||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 403 actatccctgcgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgc 344
Query: 386 tcctgggccgcccttgggttctcctggaaatca 418
||||||| |||| ||||||||||| ||||||
Sbjct: 343 gcctgggcagcccgagggttctcctgcaaatca 311
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttct 488
|||||| || || ||||| ||||||||||| || ||||| ||||| ||||||||||
Sbjct: 208 catgatcggatcagtaaggatgttctggatttcagggtcctgcatggctttgttct 153
>gb|CW196207.1|CW196207 104_620_11181046_148_36811_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181046, DNA
sequence
Length = 710
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 656 gcacctttccttgtgtaccctttagtgaaggtggggtctagttcaagacacttctctgca 715
||||||||||||||||| || || | ||| |||| ||||| |||| |||||||| |||
Sbjct: 707 gcacctttccttgtgtatcccttggagaatgtggaatctagctcaatgcacttctcagca 648
Query: 716 tctttaagaccttcaggcatggctcctaacttggtgtagcaggcagccctattgctgta 774
||||| | ||||||||| | || || | ||||||||| ||||||||||||||||||||
Sbjct: 647 tctttcaaaccttcaggaagcgcccccagcttggtgtaacaggcagccctattgctgta 589
Score = 54.0 bits (27), Expect = 3e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctcca 917
||||| ||||||||||| || || | | |||| ||||||||||||||||||||||
Sbjct: 66 cctttttctctctcctcgtcagcaattcttgggtcatagtactcttgttgctcca 12
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 316,645
Number of Sequences: 832831
Number of extensions: 316645
Number of successful extensions: 89276
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89116
Number of HSP's gapped (non-prelim): 106
length of query: 1151
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1131
effective length of database: 474,703,049
effective search space: 536889148419
effective search space used: 536889148419
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)