BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG273158.1|BG273158 OV2_27_E09.g1_A002 Ovary 2 (OV2) Sor... 1001 0.0
gb|AW746098.1|AW746098 WS1_39_H03.b1_A002 Water-stressed 1 ... 809 0.0
gb|AW923920.1|AW923920 WS1_30_B03.b1_A002 Water-stressed 1 ... 781 0.0
gb|AW925011.1|AW925011 WS1_74_C09.b1_A002 Water-stressed 1 ... 781 0.0
gb|BG048518.1|BG048518 OV1_14_E09.g2_A002 Ovary 1 (OV1) Sor... 741 0.0
gb|BG052764.1|BG052764 RHIZ2_14_E10.g1_A003 Rhizome2 (RHIZ2... 735 0.0
gb|BG240707.1|BG240707 OV1_37_C06.g1_A002 Ovary 1 (OV1) Sor... 648 0.0
gb|BE598987.1|BE598987 PI1_86_A03.g1_A002 Pathogen induced ... 640 0.0
gb|AW747621.1|AW747621 WS1_74_C09.g1_A002 Water-stressed 1 ... 626 e-178
gb|CD424860.1|CD424860 SA1_9_E01.b1_A002 Salicylic acid-tre... 622 e-176
gb|BG947049.1|BG947049 IP1_2_H09.g1_A002 Immature pannicle ... 613 e-173
gb|BI140855.1|BI140855 IP1_39_H05.b1_A002 Immature pannicle... 541 e-152
gb|BI140856.1|BI140856 IP1_39_H06.b1_A002 Immature pannicle... 529 e-148
gb|AW679708.1|AW679708 WS1_30_B03.g1_A002 Water-stressed 1 ... 496 e-138
gb|BE364598.2|BE364598 PI1_15_B06.g1_A002 Pathogen induced ... 490 e-136
gb|AW746132.1|AW746132 WS1_39_H03.g1_A002 Water-stressed 1 ... 484 e-135
gb|BE364817.2|BE364817 PI1_16_D01.g1_A002 Pathogen induced ... 480 e-133
gb|BG241025.1|BG241025 OV1_37_C06.b1_A002 Ovary 1 (OV1) Sor... 466 e-129
gb|CB929152.1|CB929152 ABA1_40_A09.b1_A012 Abscisic acid-tr... 454 e-126
gb|BG048590.1|BG048590 OV1_14_E09.b1_A002 Ovary 1 (OV1) Sor... 389 e-106
gb|CW474172.1|CW474172 fsbb001f229o04k0 Sorghum methylation... 371 e-101
gb|BE599151.1|BE599151 PI1_86_A03.b1_A002 Pathogen induced ... 347 1e-093
gb|AW679016.1|AW679016 WS1_22_D09.b1_A002 Water-stressed 1 ... 301 6e-080
gb|BG053524.1|BG053524 RHIZ2_10_C06.g1_A003 Rhizome2 (RHIZ2... 301 6e-080
gb|AW679148.1|AW679148 WS1_22_D09.g1_A002 Water-stressed 1 ... 276 3e-072
gb|CD225929.1|CD225929 CCC1_42_E11.b1_A007 Callus culture/c... 276 3e-072
gb|CF073438.1|CF073438 FE1_10_B08.b1_A002 Iron-deficient se... 266 3e-069
gb|CD206192.1|CD206192 HS1_21_F03.b1_A012 Heat-shocked seed... 260 2e-067
gb|AW565411.1|AW565411 LG1_343_H08.g1_A002 Light Grown 1 (L... 236 3e-060
gb|CW255442.1|CW255442 104_720_11226239_116_35402_096 Sorgh... 188 6e-046
gb|CW427101.1|CW427101 fsbb001f138o15k0 Sorghum methylation... 188 6e-046
gb|CW474171.1|CW474171 fsbb001f229o04f0 Sorghum methylation... 188 6e-046
gb|BG947050.1|BG947050 IP1_2_H10.g1_A002 Immature pannicle ... 131 1e-028
gb|BI099220.1|BI099220 IP1_39_H05.g1_A002 Immature pannicle... 125 8e-027
gb|CL159623.1|CL159623 104_349_10804388_114_31381_212 Sorgh... 103 3e-020
gb|CL159624.1|CL159624 104_349_10804388_116_31382_212 Sorgh... 103 3e-020
gb|CW063072.1|CW063072 104_308_10521699_5_30097 Sorghum met... 103 3e-020
gb|CW196206.1|CW196206 104_620_11181046_116_36812_093 Sorgh... 103 3e-020
gb|CW204053.1|CW204053 104_631_11186336_116_37095_018 Sorgh... 103 3e-020
gb|CW385665.1|CW385665 fsbb001f069d17k0 Sorghum methylation... 98 2e-018
gb|BZ625902.1|BZ625902 ih41e06.g1 WGS-SbicolorF (DH5a methy... 96 7e-018
gb|CW063071.1|CW063071 104_308_10521699_1_30092 Sorghum met... 84 3e-014
gb|CW040788.1|CW040788 104_274_10506292_114_30470 Sorghum m... 80 4e-013
gb|CW204054.1|CW204054 104_631_11186336_148_37094_018 Sorgh... 52 9e-005
gb|CW368797.1|CW368797 fsbb001f042o18k0 Sorghum methylation... 52 9e-005
gb|CW050367.1|CW050367 104_290_10514618_115_30205 Sorghum m... 40 0.36
gb|CW253415.1|CW253415 104_717_11225068_116_35113_016 Sorgh... 40 0.36
gb|CD230154.1|CD230154 SS1_41_B07.g1_A012 Salt-stressed see... 40 0.36
gb|CF429867.1|CF429867 PH1_24_C08.g1_A002 Phosphorous-defic... 40 0.36
>gb|BG273158.1|BG273158 OV2_27_E09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 1001 bits (505), Expect = 0.0
Identities = 601/632 (95%), Gaps = 1/632 (0%)
Strand = Plus / Minus
Query: 230 gcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggccgcacttgggt 289
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 631 gcttctgaatcttctgcataactccggggttcttcaggtgctcctgggctgcccttgggt 572
Query: 290 tctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatgttctggatct 349
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tctcctggaaata-attagcacctgtcgcatgatagggtcggtaagaatgttctggatct 513
Query: 350 ctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggcttatttcacctc 409
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 512 ctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacctc 453
Query: 410 tgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgt 469
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct: 452 tgttggccttgttgatctgttcaatacacctcctaacaccatcaagcagttccgggttgt 393
Query: 470 tcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatga 529
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 392 ttgggtcatgcttcaagccagcctggtaggtttccatggccttgtcatattctttcatga 333
Query: 530 agaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaagac 589
|||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 332 agaattgaattgcacctttccttgtataccctttggtgaaggtggggtctagatcaagac 273
Query: 590 acttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcggccc 649
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acttctctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcggccc 213
Query: 650 tattgctataaaccctaggatccttcgggtttctcttgagagcctccgtgtagtgtttta 709
||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||||||||
Sbjct: 212 tattgctgtaaaccctaggatcctttgggttcctcctgagagcctctgtgtagtgtttta 153
Query: 710 ttgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctg 769
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 152 ttgcttctgggtatttttgctccttgaagaactcgttacctttctctctctcctcatctg 93
Query: 770 ccaattttggatcataaaactcttgttgctctaactctttctttgctttctcagcctcan 829
| ||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||
Sbjct: 92 ctaattttggatcataatactcttgttgctccaaatctttctttgctctctcagcctcat 33
Query: 830 ttaactttttaagagtttctgggttccgatgc 861
|||||| ||||||||| |||||||||||||||
Sbjct: 32 ttaactgtttaagagtgtctgggttccgatgc 1
>gb|AW746098.1|AW746098 WS1_39_H03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 508
Score = 809 bits (408), Expect = 0.0
Identities = 461/479 (96%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 488 gatcatctcatntgaactatcccagcacttacaagcttctgaatcttctgcataactccg 429
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 428 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 369
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 309
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 308 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 249
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 248 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 189
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 188 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgta 129
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 128 taccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttca 69
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatcctt 674
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 68 ggcatggctcctaacttggtgtagcaggcggccctattgctgtaaaccctaggatcctt 10
>gb|AW923920.1|AW923920 WS1_30_B03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 781 bits (394), Expect = 0.0
Identities = 451/470 (95%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 475 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 416
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 415 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 356
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 296
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 295 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 236
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 235 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 176
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct: 175 taggtttccatggccttgtcatattatttcatgaagaattgaattgcacctttccttgta 116
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 115 taccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttca 56
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccct 665
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 55 ggcatggctcctaacttggtgtagcaggcggccctattgctgtaaaccct 6
>gb|AW925011.1|AW925011 WS1_74_C09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 589
Score = 781 bits (394), Expect = 0.0
Identities = 451/470 (95%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 475 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 416
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 415 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 356
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 296
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 295 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 236
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 235 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 176
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct: 175 taggtttccatggccttgtcatattatttcatgaagaattgaattgcacctttccttgta 116
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 115 taccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttca 56
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccct 665
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 55 ggcatggctcctaacttggtgtagcaggcggccctattgctgtaaaccct 6
>gb|BG048518.1|BG048518 OV1_14_E09.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 741 bits (374), Expect = 0.0
Identities = 425/442 (96%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 442 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 383
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 382 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 323
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 263
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 203
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 202 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 143
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 142 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgta 83
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 82 taccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttca 23
Query: 616 ggcatggctcctaacttggtgt 637
||||||||||||||||||||||
Sbjct: 22 ggcatggctcctaacttggtgt 1
Score = 52.0 bits (26), Expect = 9e-005
Identities = 109/132 (82%), Gaps = 6/132 (4%)
Strand = Plus / Minus
Query: 56 atccaatgtcaat-gcacttacaatccaaatg-ggataagattagcccccgaacaggttc 113
||||||||| ||| ||||||||||||||| || | ||||||| ||||| | || ||||
Sbjct: 614 atccaatgttaattgcacttacaatccaactgctaaaaagattatccccccagcatgttc 555
Query: 114 attcttatgcc---gctgctgcttgttaaaacatatgtatga-ccagggtgcacgtgaac 169
|||||| |||| |||||||||||||||| |||| ||||| || ||| ||| ||||||
Sbjct: 554 attcttctgccgctgctgctgcttgttaaaggatatatatgacccggggggcatgtgaac 495
Query: 170 aaacaaagccaa 181
|||||||||||
Sbjct: 494 taacaaagccaa 483
>gb|BG052764.1|BG052764 RHIZ2_14_E10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 617
Score = 735 bits (371), Expect = 0.0
Identities = 425/443 (95%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 443 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcaaaactccg 384
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 383 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 324
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 264
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 263 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 204
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 203 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 144
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 143 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgta 84
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 83 taccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttca 24
Query: 616 ggcatggctcctaacttggtgta 638
|||||||||||||||||||||||
Sbjct: 23 ggcatggctcctaacttggtgta 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 94 attagcccccgaacaggttcattcttatgccgctgctgct 133
|||||||||| | || |||||||||| |||||||||||||
Sbjct: 581 attagccccccagcatgttcattcttctgccgctgctgct 542
Score = 44.1 bits (22), Expect = 0.023
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 125 gctgctgcttgttaaaacatatgtatga-ccagggtgcacgtgaacaaacaaagccaa 181
|||||||||||||||| |||| ||||| || ||| ||| |||||| |||||||||||
Sbjct: 541 gctgctgcttgttaaaggatatatatgacccggggggcatgtgaactaacaaagccaa 484
>gb|BG240707.1|BG240707 OV1_37_C06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 648 bits (327), Expect = 0.0
Identities = 369/383 (96%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 324
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 323 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 264
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 204
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 203 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 144
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 143 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 84
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 83 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgta 24
Query: 556 taccctttggtgaaggtggggtc 578
|||||||||||||||||||||||
Sbjct: 23 taccctttggtgaaggtggggtc 1
Score = 50.1 bits (25), Expect = 4e-004
Identities = 98/119 (82%), Gaps = 5/119 (4%)
Strand = Plus / Minus
Query: 68 tgcacttacaatccaaatg-ggataagattagcccccgaacaggttcattcttatgcc-- 124
|||||||||||||||| || | ||||||| ||||| | || |||||||||| ||||
Sbjct: 542 tgcacttacaatccaactgctaaaaagattatccccccagcatgttcattcttctgccgc 483
Query: 125 -gctgctgcttgttaaaacatatgtatga-ccagggtgcacgtgaacaaacaaagccaa 181
|||||||||||||||| |||| ||||| || ||| ||| |||||| |||||||||||
Sbjct: 482 tgctgctgcttgttaaaggatatatatgacccggggggcatgtgaactaacaaagccaa 424
>gb|BE598987.1|BE598987 PI1_86_A03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 585
Score = 640 bits (323), Expect = 0.0
Identities = 365/379 (96%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 320
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 319 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 260
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 200
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 199 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 140
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 139 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 80
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 79 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgta 20
Query: 556 taccctttggtgaaggtgg 574
|||||||||||||||||||
Sbjct: 19 taccctttggtgaaggtgg 1
Score = 50.1 bits (25), Expect = 4e-004
Identities = 126/155 (81%), Gaps = 6/155 (3%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattatcc-aatgtcaat-gcacttacaatccaaatgggat 90
||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||| || |
Sbjct: 574 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 515
Query: 91 aagattagcccccgaacaggttcattcttatgccgctg---ctgcttgttaaaacatatg 147
|| || ||||| | || |||||||||| |||||||| |||||||||||| ||||
Sbjct: 514 aaagatatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatata 455
Query: 148 tatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 454 tatgacccggggggcatgtgaactaacaaagccaa 420
>gb|AW747621.1|AW747621 WS1_74_C09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 626 bits (316), Expect = e-178
Identities = 361/376 (96%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 376 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 317
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 316 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 257
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 197
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 196 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 137
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 136 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 77
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct: 76 taggtttccatggccttgtcatattatttcatgaagaattgaattgcacctttccttgta 17
Query: 556 taccctttggtgaagg 571
||||||||||||||||
Sbjct: 16 taccctttggtgaagg 1
Score = 60.0 bits (30), Expect = 4e-007
Identities = 129/156 (82%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-gga 89
||||||||||||||||| ||| || ||||||| || |||||||||||||||| || |
Sbjct: 572 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 513
Query: 90 taagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacatat 146
||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||||
Sbjct: 512 aaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatat 453
Query: 147 gtatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 452 atatgacccggggggcatgtgaactaacaaagccaa 417
>gb|CD424860.1|CD424860 SA1_9_E01.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_E01_A002 3', mRNA sequence
Length = 605
Score = 622 bits (314), Expect = e-176
Identities = 356/370 (96%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 370 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 311
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 310 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 251
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 191
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 190 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 131
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 130 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 71
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 70 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgta 11
Query: 556 taccctttgg 565
||||||||||
Sbjct: 10 taccctttgg 1
Score = 60.0 bits (30), Expect = 4e-007
Identities = 129/156 (82%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-gga 89
||||||||||||||||| ||| || ||||||| || |||||||||||||||| || |
Sbjct: 566 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 507
Query: 90 taagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacatat 146
||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||||
Sbjct: 506 aaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatat 447
Query: 147 gtatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 446 atatgacccggggggcatgtgaactaacaaagccaa 411
>gb|BG947049.1|BG947049 IP1_2_H09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 590
Score = 613 bits (309), Expect = e-173
Identities = 351/365 (96%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 365 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 306
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 305 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 246
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 186
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 185 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 126
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 125 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctgg 66
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 65 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgta 6
Query: 556 taccc 560
|||||
Sbjct: 5 taccc 1
Score = 60.0 bits (30), Expect = 4e-007
Identities = 129/156 (82%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-gga 89
||||||||||||||||| ||| || ||||||| || |||||||||||||||| || |
Sbjct: 561 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 502
Query: 90 taagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacatat 146
||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||||
Sbjct: 501 aaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatat 442
Query: 147 gtatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 441 atatgacccggggggcatgtgaactaacaaagccaa 406
>gb|BI140855.1|BI140855 IP1_39_H05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 439
Score = 541 bits (273), Expect = e-152
Identities = 352/377 (93%), Gaps = 2/377 (0%)
Strand = Plus / Minus
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 439 accctntggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttcag 380
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcg 676
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 379 gcatggctcctaacttggtgtagcaggcggccctattgctgtaaaccctaggatcctttg 320
Query: 677 ggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttga 736
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggttcctcctgagagcctctgtgtagtgttttattgcttctgggtatttttgctccttga 260
Query: 737 agaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgtt 796
|||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 259 agaactcgttacctttctctctctcctcatctgctaattttggatcataatactcttgtt 200
Query: 797 gctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttcc 856
|||| || |||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 199 gctccaaatctttctttgctctctcagcctcatttaactttttaagagtgtctgggttcc 140
Query: 857 gatgcncagtcagagccttctgggaggnctcgatagcaatatc-aaatccttagagggct 915
||||| |||| |||||||||||| ||| |||||| |||||||| ||||||||||||| ||
Sbjct: 139 gatgctcagttagagccttctggaaggtctcgatggcaatatcaaaatccttagaggtct 80
Query: 916 tagc-agtttgaccaga 931
|||| ||||||||||||
Sbjct: 79 tagcaagtttgaccaga 63
>gb|BI140856.1|BI140856 IP1_39_H06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 434
Score = 529 bits (267), Expect = e-148
Identities = 347/372 (93%), Gaps = 2/372 (0%)
Strand = Plus / Minus
Query: 562 ttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatg 621
||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||||
Sbjct: 434 ttggtgaaggtggggtctagatcaagacacttctctgcgtctgtaagaccttcaggcatg 375
Query: 622 gctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggttt 681
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 374 gctcctaacttggtgtagcaggcggccctattgctgtaaaccctaggatcctttgggttc 315
Query: 682 ctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaac 741
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctcctgagagcctctgtgtagtgttttattgcttctgggtatttttgctccttgaagaac 255
Query: 742 tcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgctct 801
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 254 tcgttacctttctctctctcctcatctgctaattttggatcataatactcttgttgctcc 195
Query: 802 aactctttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgc 861
|| |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 194 aaatctttctttgctctctcagcctcatttaactttttaagagtgtctgggttccgatgc 135
Query: 862 ncagtcagagccttctgggaggnctcgatagcaatatc-aaatccttagagggcttagc- 919
|||| |||||||||||| ||| |||||| |||||||| ||||||||||||| ||||||
Sbjct: 134 tcagttagagccttctggaaggtctcgatggcaatatcaaaatccttagaggtcttagca 75
Query: 920 agtttgaccaga 931
||||||||||||
Sbjct: 74 agtttgaccaga 63
>gb|AW679708.1|AW679708 WS1_30_B03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 496 bits (250), Expect = e-138
Identities = 283/294 (96%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 294 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 235
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 234 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 175
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 115
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 114 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 55
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagcca 489
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 54 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagcca 1
Score = 60.0 bits (30), Expect = 4e-007
Identities = 129/156 (82%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-gga 89
||||||||||||||||| ||| || ||||||| || |||||||||||||||| || |
Sbjct: 490 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 431
Query: 90 taagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacatat 146
||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||||
Sbjct: 430 aaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatat 371
Query: 147 gtatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 370 atatgacccggggggcatgtgaactaacaaagccaa 335
>gb|BE364598.2|BE364598 PI1_15_B06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 532
Score = 490 bits (247), Expect = e-136
Identities = 283/295 (95%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 295 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 236
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 235 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 176
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 116
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 115 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 56
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccag 490
|||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 55 cacctcctaacacaatcaagcagttccgggttgtttgggtcatgcttcaagccag 1
Score = 60.0 bits (30), Expect = 4e-007
Identities = 129/156 (82%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-gga 89
||||||||||||||||| ||| || ||||||| || |||||||||||||||| || |
Sbjct: 491 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 432
Query: 90 taagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacatat 146
||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||||
Sbjct: 431 aaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatat 372
Query: 147 gtatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 371 atatgacccggggggcatgtgaactaacaaagccaa 336
>gb|AW746132.1|AW746132 WS1_39_H03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 512
Score = 484 bits (244), Expect = e-135
Identities = 280/292 (95%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 292 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 233
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||||||||| |||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 232 gggttcttcaagtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 173
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 113
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 112 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 53
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagc 487
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 52 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagc 1
Score = 61.9 bits (31), Expect = 1e-007
Identities = 129/157 (82%), Gaps = 6/157 (3%)
Strand = Plus / Minus
Query: 31 aaactcagtgccacaaacatgaattatcc-aatgtcaat-gcacttacaatccaaatggg 88
||||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||| ||
Sbjct: 489 aaactcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgct 430
Query: 89 ataagattagcccccgaacaggttcattcttatgccgctgc---tgcttgttaaaacata 145
| || | || ||||| | || |||||||||| ||||||||| ||||||||||| |||
Sbjct: 429 aaaaaaatatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggata 370
Query: 146 tgtatga-ccagggtgcacgtgaacaaacaaagccaa 181
| ||||| || ||| ||| |||||| |||||||||||
Sbjct: 369 tatatgacccggggggcatgtgaactaacaaagccaa 333
>gb|BE364817.2|BE364817 PI1_16_D01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 480 bits (242), Expect = e-133
Identities = 278/290 (95%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 290 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 231
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 230 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgt 171
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 111
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 110 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 51
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaa 485
|||||| |||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct: 50 cacctcctaacacaatcaagcagttccgggttgtttgggtcatgcttcaa 1
Score = 60.0 bits (30), Expect = 4e-007
Identities = 129/156 (82%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-gga 89
||||||||||||||||| ||| || ||||||| || |||||||||||||||| || |
Sbjct: 486 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 427
Query: 90 taagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacatat 146
||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||||
Sbjct: 426 aaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatat 367
Query: 147 gtatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 366 atatgacccggggggcatgtgaactaacaaagccaa 331
>gb|BG241025.1|BG241025 OV1_37_C06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 466 bits (235), Expect = e-129
Identities = 305/327 (93%), Gaps = 2/327 (0%)
Strand = Plus / Minus
Query: 607 agaccttcaggcatggctcctaacttggtgtagcaggcggccctattgctataaacccta 666
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 526 agaccttcaggcatggctcctaacttggtgtagcaggcggccctattgctgtaaaccnta 467
Query: 667 ggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttt 726
|||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 466 ggatcctttgggttcctcctgagagcctctgtgtagtgttttattgcttctgggtatttt 407
Query: 727 tgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataa 786
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 406 tgctccttgaagaactcgttacctttctctctctcctcatctgctaattttggatcataa 347
Query: 787 aactcttgttgctctaactctttctttgctttctcagcctcanttaactttttaagagtt 846
||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 346 tactcttgttgctccaaatctttctttgctctctcagcctcatttaactttttaagagtg 287
Query: 847 tctgggttccgatgcncagtcagagccttctgggaggnctcgatagcaatatc-aaatcc 905
||||||||||||||| |||| |||||||||||| ||| |||||| |||||||| ||||||
Sbjct: 286 tctgggttccgatgctcagttagagccttctggaaggtctcgatggcaatatcaaaatcc 227
Query: 906 ttagagggcttagc-agtttgaccaga 931
||||||| |||||| ||||||||||||
Sbjct: 226 ttagaggtcttagcaagtttgaccaga 200
>gb|CB929152.1|CB929152 ABA1_40_A09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_40_A09_A012 3', mRNA sequence
Length = 500
Score = 454 bits (229), Expect = e-126
Identities = 274/289 (94%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 289 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 230
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 229 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattaacacctgt 170
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 169 cccatgatagggtcggtaaaaatgttctggatctctggggcttgcatagctttgttctgt 110
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 109 ctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaata 50
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttca 484
|||||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 49 cacctcctaacaccatcaagcagttccgggttgtttgggtcatgcttca 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 132/159 (83%), Gaps = 8/159 (5%)
Strand = Plus / Minus
Query: 31 aaactcagtgccacaaacatgaattatcc-aatgtcaat-gcacttacaatccaaatggg 88
||||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||| ||
Sbjct: 488 aaactcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgct 429
Query: 89 ataa-gattagcccccgaacaggttcattcttatgccgctgctgct---tgttaaaacat 144
| || ||||||||||| | || |||||||||| ||||||||||||| ||||||| ||
Sbjct: 428 aaaaagattagccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggat 369
Query: 145 atgtatgacc--agggtgcacgtgaacaaacaaagccaa 181
|| ||||||| ||| ||| |||||| |||||||||||
Sbjct: 368 atatatgacccgggggggcatgtgaactaacaaagccaa 330
>gb|BG048590.1|BG048590 OV1_14_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 389 bits (196), Expect = e-106
Identities = 264/285 (92%), Gaps = 2/285 (0%)
Strand = Plus / Minus
Query: 649 ctattgctataaaccctaggatccttcgggtttctcttgagagcctccgtgtagtgtttt 708
|||||||| ||||||||||||||||| ||||| ||| |||||||||| ||||||||||||
Sbjct: 484 ctattgctgtaaaccctaggatcctttgggttcctcctgagagcctctgtgtagtgtttt 425
Query: 709 attgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatct 768
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 424 attgcttctgggtatttttgctccttgaagaactcgttacctttctctctctcctcatct 365
Query: 769 gccaattttggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|| ||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||
Sbjct: 364 gctaattttggatcataatactcttgttgctccaaatctttctttgctctctcagcctca 305
Query: 829 nttaactttttaagagtttctgggttccgatgcncagtcagagccttctgggaggnctcg 888
|||||||||||||||| ||||||||||||||| |||| |||||||||||| ||| ||||
Sbjct: 304 tttaactttttaagagtgtctgggttccgatgctcagttagagccttctggaaggtctcg 245
Query: 889 atagcaatatc-aaatccttagagggcttagc-agtttgaccaga 931
|| |||||||| ||||||||||||| |||||| ||||||||||||
Sbjct: 244 atggcaatatcaaaatccttagaggtcttagcaagtttgaccaga 200
>gb|CW474172.1|CW474172 fsbb001f229o04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229o04, DNA
sequence
Length = 611
Score = 371 bits (187), Expect = e-101
Identities = 217/227 (95%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggt 496
||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 379 acctcctaacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggt 320
Query: 497 aggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtat 556
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 319 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtat 260
Query: 557 accctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcag 616
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 259 accctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaagaccttcag 200
Query: 617 gcatggctcctaacttggtgtagcaggcggccctattgctataaacc 663
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 199 gcatggctcctaacttggtgtagcaggcggccctattgctgtaaacc 153
Score = 121 bits (61), Expect = 1e-025
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttc 431
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 538 ctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttc 479
Query: 432 aacacacct 440
|| ||||||
Sbjct: 478 aatacacct 470
>gb|BE599151.1|BE599151 PI1_86_A03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 347 bits (175), Expect = 1e-093
Identities = 231/248 (93%), Gaps = 2/248 (0%)
Strand = Plus / Minus
Query: 686 tgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgt 745
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgagagcctctgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgt 429
Query: 746 tgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaact 805
| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |
Sbjct: 428 tacctttctctctctcctcatctgctaattttggatcataatactcttgttgctccaaat 369
Query: 806 ctttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncag 865
||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct: 368 ctttctttgctctctcagcctcatttaactttttaagagtgtctgggttccgatgctcag 309
Query: 866 tcagagccttctgggaggnctcgatagcaatatc-aaatccttagagggcttagc-agtt 923
| |||||||||||| ||| |||||| |||||||| ||||||||||||| |||||| ||||
Sbjct: 308 ttagagccttctggaaggtctcgatggcaatatcaaaatccttagaggtcttagcaagtt 249
Query: 924 tgaccaga 931
||||||||
Sbjct: 248 tgaccaga 241
>gb|AW679016.1|AW679016 WS1_22_D09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 200
Score = 301 bits (152), Expect = 6e-080
Identities = 182/192 (94%)
Strand = Plus / Minus
Query: 417 cttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcgggtc 476
||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||
Sbjct: 200 cttgttgatctgttcaatacacctcctaacaccatcaagcagttccgggttgtttgggtc 141
Query: 477 atgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatgaagaactg 536
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 140 atgcttcaagccagcctggtaggtttccatggccttgtcatattctttcatgaagaattg 81
Query: 537 aattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaagacacttttc 596
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 80 aattgcacctttccttgtataccctttggtgaaggtggggtctagatcaagacacttctc 21
Query: 597 tgcgtctttaag 608
||||||||||||
Sbjct: 20 tgcgtctttaag 9
>gb|BG053524.1|BG053524 RHIZ2_10_C06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 455
Score = 301 bits (152), Expect = 6e-080
Identities = 178/187 (95%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 187 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcaaaactccg 128
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 127 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattancacctgt 68
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cgcatgatagggtcggtaaaaatgttctggatctctgggtcttgcatagctttgttctgt 8
Query: 376 ctttctt 382
|||||||
Sbjct: 7 ctttctt 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 91/106 (85%), Gaps = 3/106 (2%)
Strand = Plus / Minus
Query: 31 aaactcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-g 87
||||||||||||||||||| |||| || ||||||| || |||||||||||||||| ||
Sbjct: 391 aaactcagtgccacaaacacgaataatcccaatgttaattgcacttacaatccaactgct 332
Query: 88 gataagattagcccccgaacaggttcattcttatgccgctgctgct 133
| || |||||||||| | || |||||||||| |||||||||||||
Sbjct: 331 aaaaaaattagccccccagcatgttcattcttctgccgctgctgct 286
>gb|AW679148.1|AW679148 WS1_22_D09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 538
Score = 276 bits (139), Expect = 3e-072
Identities = 148/151 (98%)
Strand = Plus / Minus
Query: 283 cttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatgttc 342
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 254 cttgggttctcctggaaatcaattagcacctgtcgcatgatagggtcggtaagaatgttc 195
Query: 343 tggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggcttatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 194 tggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatt 135
Query: 403 tcacctctgttggccttgttgatctgttcaa 433
|||||||||||||||||||||||||||||||
Sbjct: 134 tcacctctgttggccttgttgatctgttcaa 104
Score = 172 bits (87), Expect = 4e-041
Identities = 96/99 (96%)
Strand = Plus / Minus
Query: 472 gggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatgaag 531
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 99 gggtcatgcttcaagccagcctggtaggtttccatggccttgtcatattctttcatgaag 40
Query: 532 aactgaattgcacctttcctcgtataccctttggtgaag 570
|| ||||||||||||||||| ||||||||||||||||||
Sbjct: 39 aattgaattgcacctttccttgtataccctttggtgaag 1
Score = 103 bits (52), Expect = 3e-020
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataac 251
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataac 258
Score = 42.1 bits (21), Expect = 0.090
Identities = 47/53 (88%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaa 83
||||||||||||||||| ||| || ||||||| || ||||||||||||||||
Sbjct: 483 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaa 431
>gb|CD225929.1|CD225929 CCC1_42_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_E11_A007 3', mRNA sequence
Length = 642
Score = 276 bits (139), Expect = 3e-072
Identities = 409/499 (81%)
Strand = Plus / Minus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
|||||||||||||||| || || || |||||||| ||||| ||||| || ||||||||||
Sbjct: 501 tcatctgaactatccctgcgctgacgagcttctggatcttttgcatcactccggggttct 442
Query: 263 tcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgtcgcatga 322
| |||||| ||||||| || | ||||||||||| ||||| | | |||||| |||||||
Sbjct: 441 tgaggtgcgcctgggcagcccgagggttctcctgcaaatcagtcaaaacctgccgcatga 382
Query: 323 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 382
| || || ||||| ||||||||||| || ||||| ||||| |||||||||||||| ||||
Sbjct: 381 tcggatcagtaaggatgttctggatttcagggtcctgcatggctttgttctgtctctctt 322
Query: 383 gcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctct 442
|| ||| |||| ||| | ||| || ||| | |||||||||||||||||||||||||||
Sbjct: 321 tcagttcctcctcgctgagttcgcccctgctcgccttgttgatctgttcaacacacctcc 262
Query: 443 taacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggttt 502
| ||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||
Sbjct: 261 ttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagttt 202
Query: 503 ccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctt 562
||| || |||||||||||||||||||| || || || ||||||||||| || || || |
Sbjct: 201 ccagcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatccct 142
Query: 563 tggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatgg 622
||| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | |
Sbjct: 141 tggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcg 82
Query: 623 ctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggtttc 682
| || | ||||||||| ||||| ||||||||||| || ||||| || || || |||||||
Sbjct: 81 cccccagcttggtgtaacaggcagccctattgctgtatacccttgggtctttggggtttc 22
Query: 683 tcttgagagcctccgtgta 701
|| ||||||| || |||||
Sbjct: 21 tcctgagagcttcagtgta 3
>gb|CF073438.1|CF073438 FE1_10_B08.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_B08_A002 3', mRNA sequence
Length = 633
Score = 266 bits (134), Expect = 3e-069
Identities = 395/482 (81%)
Strand = Plus / Minus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
|||||||||||||||| || || || |||||||| ||||| ||||| || ||||||||||
Sbjct: 485 tcatctgaactatccctgcgctgacgagcttctggatcttttgcatcactccggggttct 426
Query: 263 tcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgtcgcatga 322
| |||||| ||||||| || | ||||||||||| ||||| | | |||||| |||||||
Sbjct: 425 tgaggtgcgcctgggcagcccgagggttctcctgcaaatcagtcaaaacctgccgcatga 366
Query: 323 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 382
| || || ||||| ||||||||||| || ||||| ||||| |||||||||||||| ||||
Sbjct: 365 tcggatcagtaaggatgttctggatttcagggtcctgcatggctttgttctgtctctctt 306
Query: 383 gcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctct 442
|| ||| |||| ||| | ||| || ||| | |||||||||||||||||||||||||||
Sbjct: 305 tcagttcctcctcgctgagttcgcccctgctcgccttgttgatctgttcaacacacctcc 246
Query: 443 taacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggttt 502
| ||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||
Sbjct: 245 ttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagttt 186
Query: 503 ccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctt 562
||| || |||||||||||||||||||| || || || ||||||||||| || || || |
Sbjct: 185 ccagcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatccct 126
Query: 563 tggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatgg 622
||| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | |
Sbjct: 125 tggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcg 66
Query: 623 ctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggtttc 682
| || | ||||||||| ||||| ||||||||||| || ||||| || || || |||||||
Sbjct: 65 cccccagcttggtgtaacaggcagccctattgctgtatacccttgggtctttggggtttc 6
Query: 683 tc 684
||
Sbjct: 5 tc 4
>gb|CD206192.1|CD206192 HS1_21_F03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_F03_A012 3', mRNA sequence
Length = 623
Score = 260 bits (131), Expect = 2e-067
Identities = 380/463 (82%)
Strand = Plus / Minus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
|||||||||||||||| || || || |||||||| ||||| ||||| || ||||||||||
Sbjct: 473 tcatctgaactatccctgcgctgacgagcttctggatcttttgcatcactccggggttct 414
Query: 263 tcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgtcgcatga 322
| |||||| ||||||| || | ||||||||||| ||||| | | |||||| |||||||
Sbjct: 413 tgaggtgcgcctgggcagcccgagggttctcctgcaaatcagtcaaaacctgccgcatga 354
Query: 323 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 382
| || || ||||| ||||||||||| || ||||| ||||| |||||||||||||| ||||
Sbjct: 353 tcggatcagtaaggatgttctggatttcagggtcctgcatggctttgttctgtctctctt 294
Query: 383 gcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctct 442
|| ||| |||| ||| | ||| || ||| | |||||||||||||||||||||||||||
Sbjct: 293 tcagttcctcctcgctgagttcgcccctgctcgccttgttgatctgttcaacacacctcc 234
Query: 443 taacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggttt 502
| ||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||
Sbjct: 233 ttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagttt 174
Query: 503 ccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctt 562
||| || |||||||||||||||||||| || || || ||||||||||| || || || |
Sbjct: 173 ccagcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatccct 114
Query: 563 tggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatgg 622
||| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | |
Sbjct: 113 tggagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcg 54
Query: 623 ctcctaacttggtgtagcaggcggccctattgctataaaccct 665
| || | ||||||||| ||||| ||||||||||| || |||||
Sbjct: 53 cccccagcttggtgtaacaggcagccctattgctgtataccct 11
>gb|AW565411.1|AW565411 LG1_343_H08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 400
Score = 236 bits (119), Expect = 3e-060
Identities = 161/175 (92%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
|||||| |||| |||||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 175 gatcatttcatttgaactatcccagcacttacaagcttttgaattttttgcataactccg 116
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
||||| |||||| |||||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 115 gggtttttcaggggctcctgggctgcccttgggttctcctggaaatcaattaccacctgt 56
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgt 370
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 55 cgcatgatagggtcggtaaaaatgttctggatctctgggtcttgcatagctttgt 1
>gb|CW255442.1|CW255442 104_720_11226239_116_35402_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226239, DNA
sequence
Length = 659
Score = 188 bits (95), Expect = 6e-046
Identities = 107/111 (96%)
Strand = Plus / Plus
Query: 553 gtataccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagacct 612
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 5 gtataccctttggtgaaggtggggtctagatcaagacacttctctgcgtctttaagacct 64
Query: 613 tcaggcatggctcctaacttggtgtagcaggcggccctattgctataaacc 663
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 tcaggcatggctcctaacttggtgtagcaggcggccctattgctgtaaacc 115
>gb|CW427101.1|CW427101 fsbb001f138o15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f138o15, DNA
sequence
Length = 596
Score = 188 bits (95), Expect = 6e-046
Identities = 113/119 (94%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 451 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 392
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctg 314
||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||
Sbjct: 391 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctg 333
Score = 129 bits (65), Expect = 5e-028
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 194
Query: 370 ttctg 374
|||||
Sbjct: 193 ttctg 189
Score = 121 bits (61), Expect = 1e-025
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 372 ctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttc 431
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 99 ctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttc 40
Query: 432 aacacacct 440
|| ||||||
Sbjct: 39 aatacacct 31
>gb|CW474171.1|CW474171 fsbb001f229o04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229o04, DNA
sequence
Length = 670
Score = 188 bits (95), Expect = 6e-046
Identities = 113/119 (94%)
Strand = Plus / Plus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 309 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 368
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctg 314
||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||
Sbjct: 369 gggttcttcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctg 427
Score = 129 bits (65), Expect = 5e-028
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 566
Query: 370 ttctg 374
|||||
Sbjct: 567 ttctg 571
Score = 60.0 bits (30), Expect = 4e-007
Identities = 129/156 (82%), Gaps = 7/156 (4%)
Strand = Plus / Plus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-gga 89
||||||||||||||||| ||| || ||||||| || |||||||||||||||| || |
Sbjct: 113 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 172
Query: 90 taagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacatat 146
||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||||
Sbjct: 173 aaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatat 232
Query: 147 gtatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 233 atatgacccggggggcatgtgaactaacaaagccaa 268
>gb|BG947050.1|BG947050 IP1_2_H10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 299
Score = 131 bits (66), Expect = 1e-028
Identities = 72/74 (97%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 74 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 15
Query: 256 gggttcttcaggtg 269
||||||||||||||
Sbjct: 14 gggttcttcaggtg 1
Score = 63.9 bits (32), Expect = 2e-008
Identities = 131/158 (82%), Gaps = 7/158 (4%)
Strand = Plus / Minus
Query: 31 aaactcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-g 87
||||||||||||||||||| ||| || ||||||| || |||||||||||||||| ||
Sbjct: 272 aaactcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgct 213
Query: 88 gataagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacat 144
| ||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||
Sbjct: 212 aaaaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggat 153
Query: 145 atgtatga-ccagggtgcacgtgaacaaacaaagccaa 181
|| ||||| || ||| ||| |||||| |||||||||||
Sbjct: 152 atatatgacccggggggcatgtgaactaacaaagccaa 115
>gb|BI099220.1|BI099220 IP1_39_H05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 310
Score = 125 bits (63), Expect = 8e-027
Identities = 69/71 (97%)
Strand = Plus / Minus
Query: 196 gatcatctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccg 255
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 71 gatcatctcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccg 12
Query: 256 gggttcttcag 266
|||||||||||
Sbjct: 11 gggttcttcag 1
Score = 60.0 bits (30), Expect = 4e-007
Identities = 129/156 (82%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 33 actcagtgccacaaacatgaattat-ccaatgtcaa-tgcacttacaatccaaatg-gga 89
||||||||||||||||| ||| || ||||||| || |||||||||||||||| || |
Sbjct: 267 actcagtgccacaaacacgaacaatcccaatgttaattgcacttacaatccaactgctaa 208
Query: 90 taagattagcccccgaacaggttcattcttatgcc---gctgctgcttgttaaaacatat 146
||||||| ||||| | || |||||||||| |||| |||||||||||||||| ||||
Sbjct: 207 aaagattatccccccagcatgttcattcttctgccgctgctgctgcttgttaaaggatat 148
Query: 147 gtatga-ccagggtgcacgtgaacaaacaaagccaa 181
||||| || ||| ||| |||||| |||||||||||
Sbjct: 147 atatgacccggggggcatgtgaactaacaaagccaa 112
>gb|CL159623.1|CL159623 104_349_10804388_114_31381_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804388, DNA
sequence
Length = 787
Score = 103 bits (52), Expect = 3e-020
Identities = 172/212 (81%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||||
Sbjct: 713 acaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttcc 654
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| || |||||||||||||||||||| || || || ||||||||||| || || || |||
Sbjct: 653 agcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatcccttg 594
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | ||
Sbjct: 593 gagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcc 534
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| | ||||||||| ||||| |||||||||||
Sbjct: 533 cccagcttggtgtaacaggcagccctattgct 502
>gb|CL159624.1|CL159624 104_349_10804388_116_31382_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804388, DNA
sequence
Length = 780
Score = 103 bits (52), Expect = 3e-020
Identities = 172/212 (81%)
Strand = Plus / Plus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||||
Sbjct: 308 acaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttcc 367
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| || |||||||||||||||||||| || || || ||||||||||| || || || |||
Sbjct: 368 agcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatcccttg 427
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | ||
Sbjct: 428 gagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcc 487
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| | ||||||||| ||||| |||||||||||
Sbjct: 488 cccagcttggtgtaacaggcagccctattgct 519
Score = 52.0 bits (26), Expect = 9e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacct 440
||||||||||||||||||||||||||
Sbjct: 189 gccttgttgatctgttcaacacacct 214
>gb|CW063072.1|CW063072 104_308_10521699_5_30097 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521699, DNA
sequence
Length = 543
Score = 103 bits (52), Expect = 3e-020
Identities = 172/212 (81%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||||
Sbjct: 508 acaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttcc 449
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| || |||||||||||||||||||| || || || ||||||||||| || || || |||
Sbjct: 448 agcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatcccttg 389
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | ||
Sbjct: 388 gagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcc 329
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| | ||||||||| ||||| |||||||||||
Sbjct: 328 cccagcttggtgtaacaggcagccctattgct 297
>gb|CW196206.1|CW196206 104_620_11181046_116_36812_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181046, DNA
sequence
Length = 749
Score = 103 bits (52), Expect = 3e-020
Identities = 172/212 (81%)
Strand = Plus / Plus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||||
Sbjct: 267 acaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttcc 326
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| || |||||||||||||||||||| || || || ||||||||||| || || || |||
Sbjct: 327 agcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatcccttg 386
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | ||
Sbjct: 387 gagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcc 446
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| | ||||||||| ||||| |||||||||||
Sbjct: 447 cccagcttggtgtaacaggcagccctattgct 478
Score = 52.0 bits (26), Expect = 9e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacct 440
||||||||||||||||||||||||||
Sbjct: 148 gccttgttgatctgttcaacacacct 173
>gb|CW204053.1|CW204053 104_631_11186336_116_37095_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186336, DNA
sequence
Length = 682
Score = 103 bits (52), Expect = 3e-020
Identities = 172/212 (81%)
Strand = Plus / Plus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||||
Sbjct: 74 acaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttcc 133
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| || |||||||||||||||||||| || || || ||||||||||| || || || |||
Sbjct: 134 agcgctttgtcatattctttcatgaaaaattggatagcacctttccttgtgtatcccttg 193
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | ||
Sbjct: 194 gagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcc 253
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| | ||||||||| ||||| |||||||||||
Sbjct: 254 cccagcttggtgtaacaggcagccctattgct 285
>gb|CW385665.1|CW385665 fsbb001f069d17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f069d17, DNA
sequence
Length = 777
Score = 97.6 bits (49), Expect = 2e-018
Identities = 160/197 (81%)
Strand = Plus / Plus
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
|||||||| |||||||||||||| |||||||| || || ||||||| || |||||||||
Sbjct: 44 tcctggtttttcgggtcatgctttaagccagcttgataagtttccagcgctttgtcatat 103
Query: 520 tctttcatgaagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtca 579
||||||||||| || || || ||||||||||| || || || |||| ||| |||| ||
Sbjct: 104 tctttcatgaaaaattggatagcacctttccttgtgtatcccttggagaatgtggaatct 163
Query: 580 agttcaagacacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtag 639
|| |||| ||||| || || ||||| | ||||||||| | || || | |||||||||
Sbjct: 164 agctcaatgcacttctcagcatctttcaaaccttcaggaagcgcccccagcttggtgtaa 223
Query: 640 caggcggccctattgct 656
||||| |||||||||||
Sbjct: 224 caggcagccctattgct 240
>gb|BZ625902.1|BZ625902 ih41e06.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih41e06 5', DNA sequence
Length = 712
Score = 95.6 bits (48), Expect = 7e-018
Identities = 171/212 (80%)
Strand = Plus / Minus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||||
Sbjct: 486 acaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttcc 427
Query: 505 acggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttg 564
| || ||||||||||||||||||| || || || ||||||||||| || || || |||
Sbjct: 426 agcgctttgtcatattctttcatgactaattggatagcacctttccttgtgtatcccttg 367
Query: 565 gtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggct 624
| ||| |||| || || |||| ||||| || || ||||| | ||||||||| | ||
Sbjct: 366 gagaatgtggaatctagctcaatgcacttctcagcatctttcaaaccttcaggaagcgcc 307
Query: 625 cctaacttggtgtagcaggcggccctattgct 656
|| | ||||||||| ||||| |||||||||||
Sbjct: 306 cccagcttggtgtaacaggcagccctattgct 275
Score = 52.0 bits (26), Expect = 9e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacct 440
||||||||||||||||||||||||||
Sbjct: 605 gccttgttgatctgttcaacacacct 580
>gb|CW063071.1|CW063071 104_308_10521699_1_30092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521699, DNA
sequence
Length = 638
Score = 83.8 bits (42), Expect = 3e-014
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 445 acaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttcc 504
||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||||
Sbjct: 543 acaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgataagtttcc 602
Query: 505 acggccttgtcatattctttcatgaa 530
| || ||||||||||||||||||||
Sbjct: 603 agcgctttgtcatattctttcatgaa 628
Score = 79.8 bits (40), Expect = 4e-013
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
|||||||||||||||| || || || |||||||| ||||| ||||| || ||||||||||
Sbjct: 11 tcatctgaactatccctgcgctgacgagcttctggatcttttgcatcactccggggttct 70
Query: 263 tcaggtgctcctgggccgcacttgggttctcctggaaatc 302
| |||||| ||||||| || | ||||||||||| |||||
Sbjct: 71 tgaggtgcgcctgggcagcccgagggttctcctgcaaatc 110
Score = 56.0 bits (28), Expect = 6e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
||||| |||||||| || || ||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 206 acctgccgcatgatcggatcagtaaggatgttctggatttcagggtcctgcatggctttg 265
Query: 370 ttct 373
||||
Sbjct: 266 ttct 269
Score = 52.0 bits (26), Expect = 9e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacct 440
||||||||||||||||||||||||||
Sbjct: 424 gccttgttgatctgttcaacacacct 449
>gb|CW040788.1|CW040788 104_274_10506292_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506292, DNA
sequence
Length = 717
Score = 79.8 bits (40), Expect = 4e-013
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
|||||||||||||||| || || || |||||||| ||||| ||||| || ||||||||||
Sbjct: 411 tcatctgaactatccctgcgctgacgagcttctggatcttttgcatcactccggggttct 352
Query: 263 tcaggtgctcctgggccgcacttgggttctcctggaaatc 302
| |||||| ||||||| || | ||||||||||| |||||
Sbjct: 351 tgaggtgcgcctgggcagcccgagggttctcctgcaaatc 312
Score = 56.0 bits (28), Expect = 6e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
||||| |||||||| || || ||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 216 acctgccgcatgatcggatcagtaaggatgttctggatttcagggtcctgcatggctttg 157
Query: 370 ttct 373
||||
Sbjct: 156 ttct 153
>gb|CW204054.1|CW204054 104_631_11186336_148_37094_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186336, DNA
sequence
Length = 679
Score = 52.0 bits (26), Expect = 9e-005
Identities = 105/132 (79%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
||||| ||||||||||| || || | | |||| ||||| ||||||||||||| | |||
Sbjct: 288 cctttttctctctcctcgtcagcaattcttgggtcatagtactcttgttgctccagctcc 229
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| || || ||| ||| ||||| || || ||||||||||||||| ||||
Sbjct: 228 ttctttgctcgttctgcatcatttagttttttcagggtatctgggttccgatgctcagtt 169
Query: 868 agagccttctgg 879
| |||||||||
Sbjct: 168 aacgccttctgg 157
>gb|CW368797.1|CW368797 fsbb001f042o18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042o18, DNA
sequence
Length = 717
Score = 52.0 bits (26), Expect = 9e-005
Identities = 105/132 (79%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
||||| ||||||||||| || || | | |||| ||||| ||||||||||||| | |||
Sbjct: 358 cctttttctctctcctcgtcagcaattcttgggtcatagtactcttgttgctccagctcc 299
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
||||||||| || || ||| ||| ||||| || || ||||||||||||||| ||||
Sbjct: 298 ttctttgctcgttctgcatcatttagttttttcagggtatctgggttccgatgctcagtt 239
Query: 868 agagccttctgg 879
| |||||||||
Sbjct: 238 aacgccttctgg 227
>gb|CW050367.1|CW050367 104_290_10514618_115_30205 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514618, DNA
sequence
Length = 341
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 752 tctctctctcctcatctgcc 771
||||||||||||||||||||
Sbjct: 72 tctctctctcctcatctgcc 53
>gb|CW253415.1|CW253415 104_717_11225068_116_35113_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225068, DNA
sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 752 tctctctctcctcatctgcc 771
||||||||||||||||||||
Sbjct: 576 tctctctctcctcatctgcc 557
>gb|CD230154.1|CD230154 SS1_41_B07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_41_B07_A012 5', mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 806 ctttctttgctttctcagcc 825
||||||||||||||||||||
Sbjct: 623 ctttctttgctttctcagcc 604
>gb|CF429867.1|CF429867 PH1_24_C08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_24_C08_A002 5', mRNA sequence
Length = 408
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 806 ctttctttgctttctcagcc 825
||||||||||||||||||||
Sbjct: 214 ctttctttgctttctcagcc 195
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 239,690
Number of Sequences: 832831
Number of extensions: 239690
Number of successful extensions: 68118
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67943
Number of HSP's gapped (non-prelim): 108
length of query: 932
length of database: 491,359,669
effective HSP length: 20
effective length of query: 912
effective length of database: 474,703,049
effective search space: 432929180688
effective search space used: 432929180688
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)