BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.2
(1076 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stres... 896 0.0
gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum ... 708 0.0
gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum b... 595 e-168
gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) So... 575 e-162
gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle... 517 e-145
gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Me... 500 e-139
gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sor... 500 e-139
gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stres... 484 e-135
gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle... 468 e-130
gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2... 462 e-128
gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2... 452 e-125
gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Me... 446 e-123
gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum b... 444 e-123
gb|BI140650.1|BI140650 IP1_52_A07.b1_A002 Immature pannicle... 424 e-117
gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2... 412 e-113
gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2... 408 e-112
gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infecte... 402 e-110
gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Me... 375 e-102
gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle... 375 e-102
gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) So... 355 5e-096
gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Me... 341 8e-092
gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum ... 329 3e-088
gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Me... 305 4e-081
gb|BI074812.1|BI074812 IP1_16_G03.b1_A002 Immature pannicle... 258 9e-067
gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sor... 232 5e-059
gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/ce... 232 5e-059
gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sor... 230 2e-058
gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Mer... 228 8e-058
gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Me... 190 2e-046
gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Me... 190 2e-046
gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2... 190 2e-046
gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) So... 190 2e-046
gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stresse... 190 2e-046
gb|BF421769.1|BF421769 FM1_16_D05.g1_A003 Floral-Induced Me... 182 4e-044
gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Me... 182 4e-044
gb|CW234191.1|CW234191 104_687_11213849_148_37382_067 Sorgh... 180 2e-043
gb|CW253695.1|CW253695 104_717_11225238_116_35111_023 Sorgh... 180 2e-043
gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorgh... 180 2e-043
gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation... 180 2e-043
gb|CW452021.1|CW452021 fsbb001f192f20f0 Sorghum methylation... 180 2e-043
gb|BI211863.1|BI211863 IP1_62_D02.g1_A002 Immature pannicle... 163 4e-038
gb|BI140331.1|BI140331 IP1_52_A07.g1_A002 Immature pannicle... 159 6e-037
gb|CD228245.1|CD228245 CCC1_6_E11.g1_A007 Callus culture/ce... 149 6e-034
gb|BM324187.1|BM324187 PIC1_25_D06.b1_A002 Pathogen-infecte... 147 2e-033
gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1... 143 4e-032
gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation... 139 6e-031
gb|CL153692.1|CL153692 104_338_10780894_114_31369_142 Sorgh... 135 9e-030
gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorgh... 131 1e-028
gb|CW041427.1|CW041427 104_274_10506544_114_30470 Sorghum m... 131 1e-028
gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorgh... 131 1e-028
gb|CW168693.1|CW168693 104_578_11154280_148_36605_058 Sorgh... 131 1e-028
gb|CF485311.1|CF485311 POL1_30_F05.g1_A002 Pollen Sorghum b... 113 3e-023
gb|BF421433.1|BF421433 FM1_8_F10.b1_A003 Floral-Induced Mer... 105 8e-021
gb|CW280850.1|CW280850 104_756_11407852_116_35452_012 Sorgh... 103 3e-020
gb|CL153693.1|CL153693 104_338_10780894_116_31370_142 Sorgh... 100 5e-019
gb|BF656320.1|BF656320 FM1_49_A08.g1_A003 Floral-Induced Me... 100 5e-019
gb|BG465193.1|BG465193 EM1_73_A03.g1_A002 Embryo 1 (EM1) So... 98 2e-018
gb|CF757039.1|CF757039 DSAF1_12_H07.g1_A011 Drought-stresse... 96 8e-018
gb|CW234190.1|CW234190 104_687_11213849_116_37381_067 Sorgh... 78 2e-012
gb|BI351222.1|BI351222 IP1_71_E08.g1_A002 Immature pannicle... 78 2e-012
gb|CF772019.1|CF772019 DSBF1_28_A01.g9_A010 Drought-stresse... 78 2e-012
gb|BI099442.1|BI099442 IP1_42_B10.g1_A002 Immature pannicle... 74 3e-011
gb|BG933280.1|BG933280 WS1_92_E05.g1_A002 Water-stressed 1 ... 66 7e-009
gb|BG049795.1|BG049795 FM1_65_F04.g1_A003 Floral-Induced Me... 64 3e-008
gb|CN143600.1|CN143600 WOUND1_17_F09.b1_A002 Wounded leaves... 64 3e-008
gb|BI074493.1|BI074493 IP1_16_G03.g1_A002 Immature pannicle... 62 1e-007
gb|BG051751.1|BG051751 FM1_60_H01.g1_A003 Floral-Induced Me... 60 4e-007
gb|CW041428.1|CW041428 104_274_10506544_116_30434 Sorghum m... 58 2e-006
gb|CW041429.1|CW041429 104_274_10506544_116_30484 Sorghum m... 58 2e-006
gb|CW083677.1|CW083677 104_426_10945316_116_32439_080 Sorgh... 58 2e-006
gb|AI724751.1|AI724751 RHIZ1_26_F08.y2_A001 Rhizome1 (RHIZ1... 58 2e-006
gb|BG412718.1|BG412718 OV2_33_H08.b1_A002 Ovary 2 (OV2) Sor... 58 2e-006
gb|CW272375.1|CW272375 104_744_11403400_148_36227_054 Sorgh... 52 1e-004
gb|CW039680.1|CW039680 104_272_10505636_114_30389 Sorghum m... 46 0.007
gb|CW222309.1|CW222309 104_657_11202307_148_37174_068 Sorgh... 44 0.027
gb|CW382183.1|CW382183 fsbb001f063p06k0 Sorghum methylation... 44 0.027
gb|CL185413.1|CL185413 104_399_10899512_114_32391_024 Sorgh... 42 0.10
gb|CL185414.1|CL185414 104_399_10899512_116_32395_024 Sorgh... 42 0.10
gb|CW249690.1|CW249690 104_711_11222983_116_35041_022 Sorgh... 42 0.10
gb|CW145486.1|CW145486 104_538_11138492_116_34979_080 Sorgh... 40 0.41
gb|CW479666.1|CW479666 fsbb001f238e23f0 Sorghum methylation... 40 0.41
gb|CW479667.1|CW479667 fsbb001f238e23k0 Sorghum methylation... 40 0.41
gb|BM327990.1|BM327990 PIC1_19_H07.g1_A002 Pathogen-infecte... 40 0.41
>gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 5', mRNA sequence
Length = 723
Score = 896 bits (452), Expect = 0.0
Identities = 599/648 (92%)
Strand = Plus / Minus
Query: 401 acatctcgtcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcaga 460
||||||| |||||||| |||||||| || ||||| || ||||| || || || |||||||
Sbjct: 723 acatctcatcgaacttaatgaactggccgacctgagctgctgccagatgtgcatagcaga 664
Query: 461 tgggagcaacaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgca 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 663 tgggagcaacaactgatatggctgttgtgctcctttggtacacgtaagagagcgaatgca 604
Query: 521 ccagctcctgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgag 580
||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 603 ccagctcctgcagatcatcaggattgaagcctatctcatcatgcagtatatgataatgag 544
Query: 581 ttggcctggtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttg 640
||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 543 ttggcctcgtagtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttg 484
Query: 641 gatgacagactttgttgtcaacaacagtgccagctggaacattatctggctttccaggaa 700
||||||| ||||||||||| |||||||| |||||||||||||| |||| |||||||||||
Sbjct: 483 gatgacaaactttgttgtccacaacagttccagctggaacattttctgtctttccaggaa 424
Query: 701 tgaaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatt 760
| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct: 423 taaaaaatttagtgtggtgattcttctgggcaataatcaacgtgaactttggattccatt 364
Query: 761 tctcatcaagaaatttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggt 820
| ||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 363 tttcatccaaaaacttgcaagcctcgatgatttgttgcaactcaatgttcagcacctgat 304
Query: 821 taaactgactttcactaacaccgtccctgaagatgatgacttggtcaggctttctcttcc 880
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 303 taaactgactttcactaacaccatccctgaagatgatgacttggtcaggcttcttcttcc 244
Query: 881 ctgaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatcagtttccc 940
| |||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||
Sbjct: 243 cagaactggtgtagaagtcaatcagacactcccggatcagactatcatcttcagtttccc 184
Query: 941 gtggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggacagatgctc 1000
||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 183 gtggcttaaacaaagagtcaatcatttccatcttaggtgattgggtgcggacagaagctc 124
Query: 1001 tgtatttcgagataagaggccattcacgagaactaaccacagcagcaa 1048
| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 123 tatatttcgagataagaggccattcacgagaactaacaacagcagcaa 76
>gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 871
Score = 708 bits (357), Expect = 0.0
Identities = 498/545 (91%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 327 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 386
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 387 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 446
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 447 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 506
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 507 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 566
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 567 agatcatcaggattgaagcctatctcatcatgcagaatatgataatgagttggcctcgta 626
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct: 627 gtcccgatcattccagcatgcgaacacatgtagaagtcaaagttccttggatgacaaact 686
Query: 652 ttgttgtcaacaacagtgccagctggaacattatctggctttccaggaatgaaaaattta 711
|||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 687 ttgttgtccacaacagttccagctggaacattttctgtctttccaggaatgaaaaattta 746
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| | |
Sbjct: 747 gtgtggtgattcttctgcgcaataatcaacgtgaacttcggattccatttttcatccaaa 806
Query: 772 aatttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggttaaactgactt 831
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 807 aacttgcaagcctcgatgatttgttgcaactcaatgttcagcacctgattaaactgactt 866
Query: 832 tcact 836
|||||
Sbjct: 867 tcact 871
Score = 65.9 bits (33), Expect = 7e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagt 80
|||||||||||||||||||||||||||||| || | |||| |||||||||||
Sbjct: 22 gaaccagcaacgcttaaaaggatggtttaacaacatcctacaaggttccaagt 74
>gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_B05_A002 3', mRNA sequence
Length = 683
Score = 595 bits (300), Expect = e-168
Identities = 432/476 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 487 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 428
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 427 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 368
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
|| || |||||||| || ||||| || ||||| || || || ||||| ||||||||||||
Sbjct: 367 aaattaatgaactggccgacctgagctgctgccagatgtgcatagcaaatgggagcaaca 308
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 248
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 247 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 188
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 187 gtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttggatgacaaact 128
Query: 652 ttgttgtcaacaacagtgccagctggaacattatctggctttccaggaatgaaaaattta 711
|||||||| |||||||| |||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 127 ttgttgtccacaacagttccagctggaacattttctgtctttccaggaataaaaaattta 68
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatc 767
||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 67 gtgtggtgattcttctgggcaataatcaacgtgaactttggattccatttttcatc 12
>gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 575 bits (290), Expect = e-162
Identities = 404/442 (91%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 442 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 383
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 382 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 323
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 322 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 263
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 203
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 202 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 143
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 142 gtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttggatgacaaact 83
Query: 652 ttgttgtcaacaacagtgccagctggaacattatctggctttccaggaatgaaaaattta 711
|||||||| |||||||| |||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 82 ttgttgtccacaacagttccagctggaacattttctgtctttccaggaataaaaaattta 23
Query: 712 gtgtggtgattcttctgggcaa 733
||||||||||||||||||||||
Sbjct: 22 gtgtggtgattcttctgggcaa 1
>gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 517 bits (261), Expect = e-145
Identities = 372/409 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 409 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 350
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 349 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 290
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 289 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 230
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 229 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 170
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 169 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 110
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 109 gtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttggatgacaaact 50
Query: 652 ttgttgtcaacaacagtgccagctggaacattatctggctttccaggaa 700
|||||||| |||||||| |||||||||||||| |||| |||||||||||
Sbjct: 49 ttgttgtccacaacagttccagctggaacattttctgtctttccaggaa 1
>gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 656
Score = 500 bits (252), Expect = e-139
Identities = 357/392 (91%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 395 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 336
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 335 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 276
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 275 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 216
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 215 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 156
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 155 agatcatcaggattgaagcctatctcatcatgcagaatatgataatgagttggcctcgta 96
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct: 95 gtcccgatcattccagcatgcgaacacatgtagaagtcaaagttccttggatgacaaact 36
Query: 652 ttgttgtcaacaacagtgccagctggaacatt 683
|||||||| |||||||| ||||||||||||||
Sbjct: 35 ttgttgtccacaacagttccagctggaacatt 4
>gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 677
Score = 500 bits (252), Expect = e-139
Identities = 357/392 (91%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 396 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 337
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 336 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 277
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 276 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 217
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 216 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 157
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 156 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 97
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 96 gtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttggatgacaaact 37
Query: 652 ttgttgtcaacaacagtgccagctggaacatt 683
|||||||| |||||||| ||||||||||||||
Sbjct: 36 ttgttgtccacaacagttccagctggaacatt 5
>gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 3', mRNA sequence
Length = 733
Score = 484 bits (244), Expect = e-135
Identities = 376/420 (89%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| | || || ||||||||||||
Sbjct: 420 gctcagcaaaagaacatcgagctcctgactttctcatgtaaacaaggtagctcctggaca 361
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||| ||||||||| | ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 360 gggaccctgcccgccaaagtatggccgccatggctggaggatgtctccgacatctcatcg 301
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||| ||||||||||||
Sbjct: 300 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcaaatgggagcaaca 241
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 240 actgatatggctgttgtgctcctttggtacacgtaagaaagcgaatgcaccagctcctgc 181
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 180 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 121
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 120 gtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttggatgacaaact 61
Query: 652 ttgttgtcaacaacagtgccagctggaacattatctggctttccaggaatgaaaaattta 711
|||||||| |||||||| |||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 60 ttgttgtccacaacagttccagctggaacattttctgtctttccaggaataaaaaattta 1
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
|||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 725 gaaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 671
>gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 468 bits (236), Expect = e-130
Identities = 335/368 (91%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 368 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 309
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 308 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 249
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 248 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 189
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 188 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 129
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 128 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 69
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 68 gtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttggatgacaaact 9
Query: 652 ttgttgtc 659
||||||||
Sbjct: 8 ttgttgtc 1
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
|||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 673 gaaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 619
>gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 646
Score = 462 bits (233), Expect = e-128
Identities = 332/365 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 365 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 306
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 305 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 246
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 245 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 186
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 185 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 126
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 125 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 66
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagact 651
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 65 gtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttggatgacaaact 6
Query: 652 ttgtt 656
|||||
Sbjct: 5 ttgtt 1
>gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 635
Score = 452 bits (228), Expect = e-125
Identities = 324/356 (91%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 359 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 300
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 299 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 240
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 239 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 180
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 179 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 120
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 119 agatcatcaggattgaagcctatctcatcatgcagaatatgataatgagttggcctcgta 60
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgaca 647
||||| |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 59 gtcccgatcattccagcatgcgaacacatgtagaagtcaaagttccttggatgaca 4
>gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 651
Score = 446 bits (225), Expect = e-123
Identities = 323/356 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 359 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 300
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 299 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 240
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 239 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 180
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 179 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 120
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 119 agatcatcaggattgaagcctatctcatcatgcagaatatgataatgagttggcctcgta 60
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgaca 647
||||| |||||| ||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 59 gtcccgatcattncagcatgcgaacacatgtagaagtcaaagttccttggatgaca 4
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 38 cgcttaaaaggatggtttaa 57
||||||||||||||||||||
Sbjct: 651 cgcttaaaaggatggtttaa 632
>gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_F05_A002 3', mRNA sequence
Length = 638
Score = 444 bits (224), Expect = e-123
Identities = 320/352 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 352 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 293
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 292 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 233
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 232 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 173
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 172 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 113
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 112 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 53
Query: 592 gtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggat 643
||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 52 gtcccgatcattccagcatgtgaacacatgtagaagtcaaagttccttggat 1
>gb|BI140650.1|BI140650 IP1_52_A07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 424 bits (214), Expect = e-117
Identities = 259/274 (94%)
Strand = Plus / Minus
Query: 775 ttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggttaaactgactttca 834
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 519 ttgcaagcctcgatgatttgttgcaactcaatgttcagcacctgattaaactgactttca 460
Query: 835 ctaacaccgtccctgaagatgatgacttggtcaggctttctcttccctgaactggtgtag 894
|||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 459 ctaacaccatccctgaagatgatgacttggtcaggcttcttcttcccagaactggtgtag 400
Query: 895 aagtcaatcagacactcccgaatcagaccatcgtcatcagtttcccgtggcttaaacaac 954
|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 399 aagtcaatcagacactcccggatcagaccatcatcttcagtttcccgtggcttaaacaaa 340
Query: 955 gagtcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagata 1014
||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 339 gagtcaatcatttccatcttaggtgattgggtgcggacagaagctctatatttcgagata 280
Query: 1015 agaggccattcacgagaactaaccacagcagcaa 1048
||||||||||||||||||||||| ||||||||||
Sbjct: 279 agaggccattcacgagaactaacaacagcagcaa 246
>gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 412 bits (208), Expect = e-113
Identities = 298/328 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 328 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 269
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 268 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 209
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 208 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 149
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 148 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 89
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 88 agatcatcaggattgaagcctatctcatcatgcagaatatgataatgagttggcctcgta 29
Query: 592 gtcccaatcattccagcatgtgaacaca 619
||||| |||||||||||||| |||||||
Sbjct: 28 gtcccgatcattccagcatgcgaacaca 1
>gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 634
Score = 408 bits (206), Expect = e-112
Identities = 296/326 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 326 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 267
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 266 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 207
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 206 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 147
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 146 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 87
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 86 agatcatcaggattgaagcctatctcatcatgcagaatatgataatgagttggcctcgta 27
Query: 592 gtcccaatcattccagcatgtgaaca 617
||||| |||||||||||||| |||||
Sbjct: 26 gtcccgatcattccagcatgcgaaca 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagt 80
|||||||||||||||||||||||||||||| || | |||| |||||||||||
Sbjct: 631 gaaccagcaacgcttaaaaggatggtttaacaacatcctacaaggttccaagt 579
>gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 631
Score = 402 bits (203), Expect = e-110
Identities = 293/323 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 323 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 264
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 263 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 204
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 203 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 144
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 143 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 84
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 83 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 24
Query: 592 gtcccaatcattccagcatgtga 614
||||| |||||||||||||||||
Sbjct: 23 gtcccgatcattccagcatgtga 1
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
|||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 628 gaaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 574
>gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 609
Score = 375 bits (189), Expect = e-102
Identities = 273/301 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 301 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 242
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 241 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 182
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 181 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 122
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 62
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 61 agatcatcaggattgaagcctatctcatcatgcagaatatgataatgagttggcctcgta 2
Query: 592 g 592
|
Sbjct: 1 g 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagt 80
|||||||||||||||||||||||||||||| || | |||| |||||||||||
Sbjct: 606 gaaccagcaacgcttaaaaggatggtttaacaacatcctacaaggttccaagt 554
>gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 680
Score = 375 bits (189), Expect = e-102
Identities = 276/305 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 372 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 313
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 312 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 253
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 252 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 193
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 133
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggta 591
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct: 132 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagttggcctcgta 73
Query: 592 gtccc 596
|||||
Sbjct: 72 gtccc 68
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
|||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 677 gaaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 623
>gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 355 bits (179), Expect = 5e-096
Identities = 263/291 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 291 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 232
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 231 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 172
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 171 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 112
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 111 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 52
Query: 532 aggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagtt 582
|| ||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct: 51 agatcatcaggattgaagcctatctcatcatgcagtatatgataatgagtt 1
>gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 529
Score = 341 bits (172), Expect = 8e-092
Identities = 241/264 (91%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 267 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 208
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 207 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 148
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 147 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 88
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 87 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 28
Query: 532 aggtcatcaggattgaagcctatc 555
|| |||||||||||||||||||||
Sbjct: 27 agatcatcaggattgaagcctatc 4
>gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1523
Score = 329 bits (166), Expect = 3e-088
Identities = 614/758 (81%), Gaps = 4/758 (0%)
Strand = Plus / Plus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 303 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 362
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 363 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 422
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || |||||||||||||||||||| |||||||| |
Sbjct: 423 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcgtagcagattggagcaacta 481
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||| ||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 482 ctgagatggctgttgtgcttctttgatacacataagagagcgaatgaacaaactcctgca 541
Query: 533 ggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggtag 592
|| |||| | ||| |||||||| || ||||| | ||||| || || ||||| || |
Sbjct: 542 tttcgtcagcagagaaacctatctcatcgtgcagaacatgataatgggtcggccttgttg 601
Query: 593 tcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagactt 652
| |||||||| |||||||||| |||||||||||| || |||||| | ||||| || ||||
Sbjct: 602 ttccaatcatcccagcatgtgcacacatgtagaagtcaaagttcttaggatggcaaactt 661
Query: 653 tgttgtcaacaacagtgccagctggaacattatctggctttccaggaatg-aaaaattta 711
| ||||| || ||||| || | ||||||| ||||| ||| || || ||||| ||
Sbjct: 662 tattgtccacgacagttccgggaagaacattgtctggtgatcc-ggtctgaaaaaacttg 720
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
|||||||| ||||| || |||| |||| ||||||||||| ||| ||||||||||||
Sbjct: 721 gtgtggtggttcttttgagcaacaatcacagtgaacttgggtgaccacttctcatcaaga 780
Query: 772 aatttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggttaaactgactt 831
|| || || |||||||| || || | || |||||||| | |||||| |||||||||||
Sbjct: 781 aacttacatgcctcaattatctgatccagttcaatgttgatgacctgggtaaactgactt 840
Query: 832 tcactaacaccgtccctgaagatgatgacttggtcaggctttctcttccctgaactggtg 891
|| || || || |||||||| ||||| | ||||| || |||| ||| || || || |||
Sbjct: 841 tcgctgactccatccctgaaaatgataatgtggtctggttttcgcttgccagagctagtg 900
Query: 892 tagaagtcaatcagacactcccgaatcagaccatcgtcatcagtttcccgtggcttaaac 951
|||||||||||||| | |||| ||| || ||||| |||||||| ||||||||||||||
Sbjct: 901 tagaagtcaatcagtgattccctaatgaggccatcatcatcagtaccccgtggcttaaac 960
Query: 952 aacgagtcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgag 1011
|| ||| |||||||| | | | | ||||||||| | || |||||||| ||||| |||
Sbjct: 961 aaggaggacatcatttctagtctggcggattgggtgtgcactgatgctctatatttagag 1020
Query: 1012 ataagaggccattcacgagaactaaccacagcagcaac 1049
||||||||||||| ||||||||||||||| || |||||
Sbjct: 1021 ataagaggccattgacgagaactaaccacggctgcaac 1058
>gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 522
Score = 305 bits (154), Expect = 4e-081
Identities = 220/242 (90%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 242 gctcagcagaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 183
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 182 gggacgctgcccgccgaagtatggccaccatggctggaggatgtctccgacatctcatcg 123
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaaca 471
||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||||
Sbjct: 122 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaaca 63
Query: 472 actgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgc 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 62 actgatatggctgttgtgctcctttggtacacgtaagagagcgaatgcaccagctcctgc 3
Query: 532 ag 533
||
Sbjct: 2 ag 1
>gb|BI074812.1|BI074812 IP1_16_G03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 258 bits (130), Expect = 9e-067
Identities = 157/166 (94%)
Strand = Plus / Minus
Query: 883 gaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatcagtttcccgt 942
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 508 gaactggtgtagaagtcaatcagacactcccggatcagaccatcatcttcagtttcccgt 449
Query: 943 ggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggacagatgctctg 1002
||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 448 ggcttaaacaaagagtcaatcatttccatcttaggtgattgggtgcggacagaagctcta 389
Query: 1003 tatttcgagataagaggccattcacgagaactaaccacagcagcaa 1048
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 388 tatttcgagataagaggccattcacgagaactaacaacagcagcaa 343
>gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 193
Score = 232 bits (117), Expect = 5e-059
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 341 gctcctggacagggacgctgcccgccgaggtatgccccccatggctagatgaagtctccg 400
|||||||||||||||||||||||||||| ||||| || |||||||| || || |||||||
Sbjct: 193 gctcctggacagggacgctgcccgccgaagtatggccgccatggctggaggatgtctccg 134
Query: 401 acatctcgtcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcaga 460
||||||| |||||||| |||||||| || ||||| || ||||| || || || ||||| |
Sbjct: 133 acatctcatcgaacttaatgaactggccgacctgagctgctgccagatgtgcatagcaaa 74
Query: 461 tgggagcaacaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgca 520
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 73 tgggagcaacaactgatatggctgttgtgctcctttggtacacgtaagatagcgaatgca 14
Query: 521 ccagctcctgcag 533
|||||||||||||
Sbjct: 13 ccagctcctgcag 1
>gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 3', mRNA sequence
Length = 638
Score = 232 bits (117), Expect = 5e-059
Identities = 302/361 (83%), Gaps = 2/361 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 362 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 303
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 302 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 243
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || ||||||||||| |||||||| |||||||| |
Sbjct: 242 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcatagcagattggagcaacta 184
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||||||||| ||||||||||||||||| || || | ||||||||
Sbjct: 183 ctgagatggctgttgtgctcctttgatacacgtaagagagcgaatgaacaaactcctgca 124
Query: 533 ggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggtag 592
|| |||| | ||| |||||||| || ||||| | ||||| || || ||||| || |
Sbjct: 123 tttcgtcagcagagaaacctatctcatcgtgcagaacatgataatgggtcggccttgttg 64
Query: 593 tcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagactt 652
| |||||||| |||||||||| |||||||||||| || |||||| | ||||| || ||||
Sbjct: 63 ttccaatcatcccagcatgtgcacacatgtagaagtcaaagttcttaggatggcaaactt 4
Query: 653 t 653
|
Sbjct: 3 t 3
>gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 230 bits (116), Expect = 2e-058
Identities = 313/376 (83%), Gaps = 2/376 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 390 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 331
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 330 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 271
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || ||||||||||| |||||||| |||||||| |
Sbjct: 270 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcatagcagattggagcaacta 212
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||||||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 211 ctgagatggctgttgtgctcctttgatacacataagagagcgaatgaacaaactcctgca 152
Query: 533 ggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggtag 592
|| |||| | ||| |||||||| || ||||| | ||||| || || ||||| || |
Sbjct: 151 tttcgtcagcagagaaacctatctcatcgtgcagaacatgataatgggtcggccttgttg 92
Query: 593 tcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagactt 652
| |||||||| |||||||||| |||||||||||| || |||||| | ||||| || ||||
Sbjct: 91 ttccaatcatcccagcatgtgcacacatgtagaagtcaaagttcttaggatggcaaactt 32
Query: 653 tgttgtcaacaacagt 668
| ||||| || |||||
Sbjct: 31 tattgtccacgacagt 16
>gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 228 bits (115), Expect = 8e-058
Identities = 306/367 (83%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 372 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 313
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 312 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 253
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || |||||||||||||||||||| |||||||| |
Sbjct: 252 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcgtagcagattggagcaacta 194
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||| ||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 193 ctgagatggctgttgtgcttctttgatacacataagagagcgaatgaacaaactcctgca 134
Query: 533 ggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctggtag 592
|| |||| | ||| |||||||| || ||||| | ||||| || || ||||| || |
Sbjct: 133 tttcgtcagcagagaaacctatctcatcgtgcagaacatgataatgggtcggccttgttg 74
Query: 593 tcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagactt 652
| |||||||| |||||||||| |||||||||||| || |||||| | ||||| || ||||
Sbjct: 73 ttccaatcatcccagcatgtgcacacatgtagaagtcaaagttcttaggatggcaaactt 14
Query: 653 tgttgtc 659
| |||||
Sbjct: 13 tattgtc 7
>gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 550
Score = 190 bits (96), Expect = 2e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 294 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 235
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 234 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 175
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || |||||||||||||||||||| |||||||| |
Sbjct: 174 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcgtagcagattggagcaacta 116
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||| ||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 115 ctgagatggctgttgtgcttctttgatacacataagagagcgaatgaacaaactcctgca 56
>gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 190 bits (96), Expect = 2e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 275 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 216
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 215 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 156
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || |||||||||||||||||||| |||||||| |
Sbjct: 155 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcgtagcagattggagcaacta 97
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||| ||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 96 ctgagatggctgttgtgcttctttgatacacataagagagcgaatgaacaaactcctgca 37
>gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 324
Score = 190 bits (96), Expect = 2e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 255 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 196
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 195 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 136
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || |||||||||||||||||||| |||||||| |
Sbjct: 135 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcgtagcagattggagcaacta 77
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||| ||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 76 ctgagatggctgttgtgcttctttgatacacataagagagcgaatgaacaaactcctgca 17
>gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 190 bits (96), Expect = 2e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 291 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 232
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 231 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 172
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || ||||||||||| |||||||| |||||||| |
Sbjct: 171 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcatagcagattggagcaacta 113
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||||||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 112 ctgagatggctgttgtgctcctttgatacacataagagagcgaatgaacaaactcctgca 53
>gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_F09_A011 3', mRNA sequence
Length = 585
Score = 190 bits (96), Expect = 2e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 266 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 207
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 206 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 147
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || ||||||||||| |||||||| |||||||| |
Sbjct: 146 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcatagcagattggagcaacta 88
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||||||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 87 ctgagatggctgttgtgctcctttgatacacataagagagcgaatgaacaaactcctgca 28
>gb|BF421769.1|BF421769 FM1_16_D05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 485
Score = 182 bits (92), Expect = 4e-044
Identities = 192/223 (86%), Gaps = 2/223 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 234 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 175
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 174 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 115
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| |||| || || |||||||||||||||||||| |||||||| |
Sbjct: 114 tttcaggaacgtgccca-cctgngctgcagcaaggtgggcgtagcagattggagcaacta 56
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcga 515
|||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 55 ctgagatggctgttgtgcttctttgatacacataagagagcga 13
>gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 360
Score = 182 bits (92), Expect = 4e-044
Identities = 205/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
||||||||||||||| || |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 273 tcagcagaagaacatcgaactcctcactttctcatgcaggcgaggcagctccggcacggg 214
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 213 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 154
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || |||||||||||||||||||| |||||||| |
Sbjct: 153 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcgtagcagattggagcaacta 95
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||| ||||| ||||| ||||||||||| || || | ||||||||
Sbjct: 94 ctgagatggctgttgtgcttctttgatacacataagagagcgaatgaacaaactcctgca 35
>gb|CW234191.1|CW234191 104_687_11213849_148_37382_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213849, DNA
sequence
Length = 712
Score = 180 bits (91), Expect = 2e-043
Identities = 157/179 (87%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 297 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 238
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 237 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 178
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaac 470
||||| |||||||| || ||||| || ||||| || || || |||||||||||||||||
Sbjct: 177 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaac 119
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
|||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 602 gaaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 548
>gb|CW253695.1|CW253695 104_717_11225238_116_35111_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225238, DNA
sequence
Length = 745
Score = 180 bits (91), Expect = 2e-043
Identities = 157/179 (87%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 560 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 619
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 620 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 679
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaac 470
||||| |||||||| || ||||| || ||||| || || || |||||||||||||||||
Sbjct: 680 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaac 738
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
|||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 255 gaaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 309
>gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225238, DNA
sequence
Length = 665
Score = 180 bits (91), Expect = 2e-043
Identities = 157/179 (87%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 499 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 440
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 439 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 380
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaac 470
||||| |||||||| || ||||| || ||||| || || || |||||||||||||||||
Sbjct: 379 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaac 321
Score = 117 bits (59), Expect = 2e-024
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 83 tacacgtaagagagcgaatgcaccagctcctgcagatcatcaggattgaagcctatctca 24
Query: 559 tcatgcaggatgtgatagtgagt 581
|||||||| || ||||| |||||
Sbjct: 23 tcatgcagtatatgataatgagt 1
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 470 caactgatatggctgttgtgctcctttggtac 501
||||||||||||||||||||||||||||||||
Sbjct: 216 caactgatatggctgttgtgctcctttggtac 185
>gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f163m16, DNA
sequence
Length = 725
Score = 180 bits (91), Expect = 2e-043
Identities = 157/179 (87%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 568 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 509
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 508 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 449
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaac 470
||||| |||||||| || ||||| || ||||| || || || |||||||||||||||||
Sbjct: 448 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaac 390
Score = 139 bits (70), Expect = 6e-031
Identities = 91/98 (92%)
Strand = Plus / Minus
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 152 tacacgtaagagagcgaatgcaccagctcctgcagatcatcaggattgaagcctatctca 93
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtccc 596
|||||||| || ||||| ||||||||||| ||||||||
Sbjct: 92 tcatgcagtatatgataatgagttggcctcgtagtccc 55
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 470 caactgatatggctgttgtgctcctttggtac 501
||||||||||||||||||||||||||||||||
Sbjct: 285 caactgatatggctgttgtgctcctttggtac 254
>gb|CW452021.1|CW452021 fsbb001f192f20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f20, DNA
sequence
Length = 684
Score = 180 bits (91), Expect = 2e-043
Identities = 157/179 (87%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 435 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 494
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 495 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 554
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaac 470
||||| |||||||| || ||||| || ||||| || || || |||||||||||||||||
Sbjct: 555 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagatgggagcaac 613
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
|||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 130 gaaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 184
>gb|BI211863.1|BI211863 IP1_62_D02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 163 bits (82), Expect = 4e-038
Identities = 148/170 (87%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 170 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 111
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 110 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 51
Query: 412 aactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagat 461
||||| |||||||| || ||||| || ||||| || || || ||||||||
Sbjct: 50 aacttaatgaactggccgacctgagctgctgccagatgtgcatagcagat 1
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 28 gaaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
|||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 475 gaaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 421
>gb|BI140331.1|BI140331 IP1_52_A07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 465
Score = 159 bits (80), Expect = 6e-037
Identities = 134/152 (88%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 158 gctcagcaaaagaacatcgagctcctgactttctcatgtagacgaggtagctcctggaca 99
Query: 352 gggacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcg 411
||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||
Sbjct: 98 gggacgctgcccgccgaagtatggccgccatggctggaggatgtctccgacatctcatcg 39
Query: 412 aactttatgaactgcccaacctgggcggctgc 443
||||| |||||||| || ||||| || |||||
Sbjct: 38 aacttaatgaactggccgacctgagctgctgc 7
Score = 75.8 bits (38), Expect = 8e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 29 aaccagcaacgcttaaaaggatggtttaaggacgtgctaccaggttccaagtct 82
||||||||||||||||||||||||||||| ||| | |||| |||||||||||||
Sbjct: 462 aaccagcaacgcttaaaaggatggtttaacgacatcctacaaggttccaagtct 409
>gb|CD228245.1|CD228245 CCC1_6_E11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 5', mRNA sequence
Length = 599
Score = 149 bits (75), Expect = 6e-034
Identities = 279/347 (80%)
Strand = Plus / Minus
Query: 703 aaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttc 762
||||| || |||||||| ||||| || |||| |||| ||||||||||| ||| |||
Sbjct: 597 aaaaacttggtgtggtggttcttttgagcaacaatcacagtgaacttgggtgaccacttc 538
Query: 763 tcatcaagaaatttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggtta 822
||||||||||| || || |||||||| || || | || |||||||| | |||||| ||
Sbjct: 537 tcatcaagaaacttacatgcctcaattatctgatccagttcaatgttgatgacctgggta 478
Query: 823 aactgactttcactaacaccgtccctgaagatgatgacttggtcaggctttctcttccct 882
||||||||||| || || || |||||||| ||||| | ||||| || |||| ||| ||
Sbjct: 477 aactgactttcgctgactccatccctgaaaatgataatgtggtctggttttcgcttgcca 418
Query: 883 gaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatcagtttcccgt 942
|| || ||||||||||||||||| | |||| ||| || ||||| |||||||| |||||
Sbjct: 417 gagctagtgtagaagtcaatcagtgattccctaatgaggccatcatcatcagtaccccgt 358
Query: 943 ggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggacagatgctctg 1002
||||||||||| ||| |||||||| | | | | ||||||||| | || ||||||||
Sbjct: 357 ggcttaaacaaggaggacatcatttctagtctggcggattgggtgtgcactgatgctcta 298
Query: 1003 tatttcgagataagaggccattcacgagaactaaccacagcagcaac 1049
||||| |||||||||||||||| ||||||||||||||| || |||||
Sbjct: 297 tatttagagataagaggccattgacgagaactaaccacggctgcaac 251
>gb|BM324187.1|BM324187 PIC1_25_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 512
Score = 147 bits (74), Expect = 2e-033
Identities = 89/94 (94%)
Strand = Plus / Minus
Query: 955 gagtcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagata 1014
||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 508 gagtcaatcatttccatcttaggtgattgggtgcggacagaagctctatatttcgagata 449
Query: 1015 agaggccattcacgagaactaaccacagcagcaa 1048
||||||||||||||||||||||| ||||||||||
Sbjct: 448 agaggccattcacgagaactaacaacagcagcaa 415
>gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 143 bits (72), Expect = 4e-032
Identities = 201/240 (83%), Gaps = 3/240 (1%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||| || |||||||| |||||||||||||||||||| | ||||||||| | || ||
Sbjct: 252 tcagcaaaaaaacatggaactcctcactttctcatgcaggcaaggcagctccggcacggg 193
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 192 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 133
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaacaa 472
|| | |||| |||||| ||||||| || ||||||||||| ||||| || |||||||| |
Sbjct: 132 tttcaggaacgtgccca-cctgggctgcagcaaggtgggcatagcaaattggagcaacta 74
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
|||| |||||||||||||||||||| | ||| ||||||||||| || || | ||||||||
Sbjct: 73 ctgaaatggctgttgtgctcctttgat-cacataagagagcgaatgaacaaactcctgca 15
>gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f20, DNA
sequence
Length = 703
Score = 139 bits (70), Expect = 6e-031
Identities = 91/98 (92%)
Strand = Plus / Minus
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 554 tacacgtaagagagcgaatgcaccagctcctgcagatcatcaggattgaagcctatctca 495
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtccc 596
|||||||| || ||||| ||||||||||| ||||||||
Sbjct: 494 tcatgcagtatatgataatgagttggcctcgtagtccc 457
Score = 109 bits (55), Expect = 5e-022
Identities = 67/71 (94%)
Strand = Plus / Minus
Query: 598 atcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacagactttgttg 657
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 135 atcattccagcatgtgaacacatgtagaagtcaaagttccttggatgacaaactttgttg 76
Query: 658 tcaacaacagt 668
|| ||||||||
Sbjct: 75 tccacaacagt 65
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 470 caactgatatggctgttgtgctcctttggtac 501
||||||||||||||||||||||||||||||||
Sbjct: 687 caactgatatggctgttgtgctcctttggtac 656
>gb|CL153692.1|CL153692 104_338_10780894_114_31369_142 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780894, DNA
sequence
Length = 674
Score = 135 bits (68), Expect = 9e-030
Identities = 151/176 (85%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 175 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 116
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 115 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 56
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| | |||| ||||| |||||||| || ||||||||||| |||||||||||||||
Sbjct: 55 tttcaggaacgtgccc-acctgggctgcagcaaggtgggcatagcagatgggagca 1
>gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891763, DNA
sequence
Length = 743
Score = 131 bits (66), Expect = 1e-028
Identities = 152/178 (85%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 479 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 420
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 419 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 360
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaac 470
|| | |||| ||||| |||||||| || ||||||||||| |||||||| ||||||||
Sbjct: 359 tttcaggaacgtgccc-acctgggctgcagcaaggtgggcatagcagattggagcaac 303
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 472 actgatatggctgttgtgctcctttg 497
||||| ||||||||||||||||||||
Sbjct: 204 actgagatggctgttgtgctcctttg 179
>gb|CW041427.1|CW041427 104_274_10506544_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506544, DNA
sequence
Length = 700
Score = 131 bits (66), Expect = 1e-028
Identities = 152/178 (85%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 327 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 386
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 387 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 446
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaac 470
|| | |||| ||||| |||||||| || ||||||||||| |||||||| ||||||||
Sbjct: 447 tttcaggaacgtgccc-acctgggctgcagcaaggtgggcatagcagattggagcaac 503
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 472 actgatatggctgttgtgctcctttg 497
||||| ||||||||||||||||||||
Sbjct: 602 actgagatggctgttgtgctcctttg 627
>gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945316, DNA
sequence
Length = 625
Score = 131 bits (66), Expect = 1e-028
Identities = 152/178 (85%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
|||||||||||||||||| |||||||||||||||||||| || ||||||||| | || ||
Sbjct: 201 tcagcagaagaacatggaactcctcactttctcatgcaggcgaggcagctccggcacggg 260
Query: 354 gacgctgcccgccgaggtatgccccccatggctagatgaagtctccgacatctcgtcgaa 413
| |||||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 261 agcactgcccgccgaggtatgccctccctggctggaggacgtgtctgacatctcctcgaa 320
Query: 414 ctttatgaac-tgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaac 470
|| | |||| ||||| |||||||| || ||||||||||| |||||||| ||||||||
Sbjct: 321 tttcaggaacgtgccc-acctgggctgcagcaaggtgggcatagcagattggagcaac 377
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 472 actgatatggctgttgtgctcctttg 497
||||| ||||||||||||||||||||
Sbjct: 476 actgagatggctgttgtgctcctttg 501
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 258,186
Number of Sequences: 832831
Number of extensions: 258186
Number of successful extensions: 70631
Number of sequences better than 0.5: 83
Number of HSP's better than 0.5 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70404
Number of HSP's gapped (non-prelim): 183
length of query: 1076
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1056
effective length of database: 474,703,049
effective search space: 501286419744
effective search space used: 501286419744
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)