BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.1
(867 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum ... 605 e-171
gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum b... 573 e-161
gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) So... 567 e-160
gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle... 509 e-142
gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Me... 492 e-137
gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sor... 492 e-137
gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stres... 484 e-135
gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stres... 476 e-132
gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle... 468 e-130
gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2... 462 e-128
gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2... 452 e-125
gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Me... 446 e-123
gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum b... 444 e-123
gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2... 412 e-113
gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2... 408 e-112
gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infecte... 402 e-110
gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Me... 375 e-102
gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle... 375 e-102
gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) So... 355 4e-096
gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Me... 341 7e-092
gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Me... 305 4e-081
gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sor... 232 4e-059
gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sor... 232 4e-059
gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/ce... 232 4e-059
gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum ... 232 4e-059
gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Mer... 228 7e-058
gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Me... 190 1e-046
gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Me... 190 1e-046
gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2... 190 1e-046
gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) So... 190 1e-046
gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stresse... 190 1e-046
gb|BF421769.1|BF421769 FM1_16_D05.g1_A003 Floral-Induced Me... 182 4e-044
gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Me... 182 4e-044
gb|CW234191.1|CW234191 104_687_11213849_148_37382_067 Sorgh... 180 1e-043
gb|CW253695.1|CW253695 104_717_11225238_116_35111_023 Sorgh... 180 1e-043
gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorgh... 180 1e-043
gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation... 180 1e-043
gb|CW452021.1|CW452021 fsbb001f192f20f0 Sorghum methylation... 180 1e-043
gb|BI211863.1|BI211863 IP1_62_D02.g1_A002 Immature pannicle... 163 3e-038
gb|BI140331.1|BI140331 IP1_52_A07.g1_A002 Immature pannicle... 159 5e-037
gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1... 143 3e-032
gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation... 139 5e-031
gb|CL153692.1|CL153692 104_338_10780894_114_31369_142 Sorgh... 135 8e-030
gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorgh... 131 1e-028
gb|CW041427.1|CW041427 104_274_10506544_114_30470 Sorghum m... 131 1e-028
gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorgh... 131 1e-028
gb|CW168693.1|CW168693 104_578_11154280_148_36605_058 Sorgh... 131 1e-028
gb|CW280850.1|CW280850 104_756_11407852_116_35452_012 Sorgh... 103 3e-020
gb|CL153693.1|CL153693 104_338_10780894_116_31370_142 Sorgh... 100 4e-019
gb|BF656320.1|BF656320 FM1_49_A08.g1_A003 Floral-Induced Me... 100 4e-019
gb|BG465193.1|BG465193 EM1_73_A03.g1_A002 Embryo 1 (EM1) So... 98 2e-018
gb|CF757039.1|CF757039 DSAF1_12_H07.g1_A011 Drought-stresse... 96 6e-018
gb|CW234190.1|CW234190 104_687_11213849_116_37381_067 Sorgh... 78 2e-012
gb|BI351222.1|BI351222 IP1_71_E08.g1_A002 Immature pannicle... 78 2e-012
gb|CF772019.1|CF772019 DSBF1_28_A01.g9_A010 Drought-stresse... 78 2e-012
gb|BI099442.1|BI099442 IP1_42_B10.g1_A002 Immature pannicle... 74 2e-011
gb|BG933280.1|BG933280 WS1_92_E05.g1_A002 Water-stressed 1 ... 66 6e-009
gb|BG049795.1|BG049795 FM1_65_F04.g1_A003 Floral-Induced Me... 64 2e-008
gb|CN143600.1|CN143600 WOUND1_17_F09.b1_A002 Wounded leaves... 64 2e-008
gb|BI074493.1|BI074493 IP1_16_G03.g1_A002 Immature pannicle... 62 9e-008
gb|BG051751.1|BG051751 FM1_60_H01.g1_A003 Floral-Induced Me... 60 4e-007
gb|CW041428.1|CW041428 104_274_10506544_116_30434 Sorghum m... 58 1e-006
gb|CW041429.1|CW041429 104_274_10506544_116_30484 Sorghum m... 58 1e-006
gb|CW083677.1|CW083677 104_426_10945316_116_32439_080 Sorgh... 58 1e-006
gb|AI724751.1|AI724751 RHIZ1_26_F08.y2_A001 Rhizome1 (RHIZ1... 58 1e-006
gb|CW039680.1|CW039680 104_272_10505636_114_30389 Sorghum m... 46 0.005
gb|CW222309.1|CW222309 104_657_11202307_148_37174_068 Sorgh... 44 0.021
gb|CW382183.1|CW382183 fsbb001f063p06k0 Sorghum methylation... 44 0.021
gb|CW479666.1|CW479666 fsbb001f238e23f0 Sorghum methylation... 40 0.33
gb|CW479667.1|CW479667 fsbb001f238e23k0 Sorghum methylation... 40 0.33
gb|BM327990.1|BM327990 PIC1_19_H07.g1_A002 Pathogen-infecte... 40 0.33
>gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 871
Score = 605 bits (305), Expect = e-171
Identities = 473/524 (90%), Gaps = 4/524 (0%)
Strand = Plus / Minus
Query: 62 gtgctgaacattgant-gcaacaaatcattgag-cttgcaaattcttg-atgagaaatg- 117
|||||||||||||| | |||||||||||| ||| ||||||| || ||| |||| |||||
Sbjct: 850 gtgctgaacattgagttgcaacaaatcatcgaggcttgcaagtttttggatgaaaaatgg 791
Query: 118 aatcccaagttcacattgatcattgcccagaagaatcaccacactaaatttttcattcct 177
||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 790 aatccgaagttcacgttgattattgcgcagaagaatcaccacactaaatttttcattcct 731
Query: 178 ggaaagccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaagg 237
|||||| |||| ||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct: 730 ggaaagacagaaaatgttccagctggaactgttgtggacaacaaagtttgtcatccaagg 671
Query: 238 aacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcac 297
||||| || |||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 670 aactttgacttctacatgtgttcgcatgctggaatgatcgggactacgaggccaactcat 611
Query: 298 tatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcac 357
||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 610 tatcatattctgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgcat 551
Query: 358 tcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgc 491
Query: 418 tacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatgtcggag 477
|| || || || ||||| || ||||| || |||||||| |||||||| ||||||||||||
Sbjct: 490 tatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgagatgtcggag 431
Query: 478 acttcatctagccatggggggcatacctcggcgggcagcgtccctgtccaggagctgccc 537
|| || || |||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 430 acatcctccagccatggtggccatacttcggcgggcagcgtccctgtccaggagctacct 371
Query: 538 cgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 370 cgtctacatgagaaagtcaggagctcgatgttcttctgctgagc 327
Score = 65.9 bits (33), Expect = 6e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 786 acttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||| |||| | | |||||||||||||||||||||||||||||||
Sbjct: 74 acttggaaccttgtaggatgttgttaaaccatccttttaagcgttgctggttc 22
>gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_B05_A002 3', mRNA sequence
Length = 683
Score = 573 bits (289), Expect = e-161
Identities = 421/465 (90%)
Strand = Plus / Plus
Query: 117 gaatcccaagttcacattgatcattgcccagaagaatcaccacactaaatttttcattcc 176
|||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 23 gaatccaaagttcacgttgattattgcccagaagaatcaccacactaaattttttattcc 82
Query: 177 tggaaagccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaag 236
||||||| |||| ||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct: 83 tggaaagacagaaaatgttccagctggaactgttgtggacaacaaagtttgtcatccaag 142
Query: 237 gaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactca 296
|||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 143 gaactttgacttctacatgtgttcacatgctggaatgatcgggactacgaggccaactca 202
Query: 297 ctatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgca 356
||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 203 ttatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgca 262
Query: 357 ctcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctg 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 ttcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatttg 322
Query: 417 ctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatgtcgga 476
||| || || || ||||| || ||||| || |||||||| || ||||| |||||||||||
Sbjct: 323 ctatgcacatctggcagcagctcaggtcggccagttcattaatttcgatgagatgtcgga 382
Query: 477 gacttcatctagccatggggggcatacctcggcgggcagcgtccctgtccaggagctgcc 536
||| || || |||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 383 gacatcctccagccatggcggccatacttcggcgggcagcgtccctgtccaggagctacc 442
Query: 537 ccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 443 tcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 487
>gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 567 bits (286), Expect = e-160
Identities = 403/442 (91%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 1 ttgcccagaagaatcaccacactaaattttttattcctggaaagacagaaaatgttccag 60
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 61 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 120
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
|||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct: 121 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 180
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 240
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
|||||||||||||||||||||||||||||||||||||||| || || || ||||| || |
Sbjct: 241 ggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagctc 300
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatggggggc 499
|||| || |||||||| |||||||| |||||||||||||| || || |||||||| || |
Sbjct: 301 aggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggcggcc 360
Query: 500 atacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagga 559
|||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct: 361 atacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagga 420
Query: 560 gctccatgttcttctgctgagc 581
|||| |||||||| ||||||||
Sbjct: 421 gctcgatgttcttttgctgagc 442
>gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 509 bits (257), Expect = e-142
Identities = 371/409 (90%)
Strand = Plus / Plus
Query: 173 ttcctggaaagccagataatgttccagccggcactgttgttgacaacaaagtctgtcatc 232
||||||||||| |||| ||||||||||| || |||||||| ||||||||||| |||||||
Sbjct: 1 ttcctggaaagacagaaaatgttccagctggaactgttgtggacaacaaagtttgtcatc 60
Query: 233 caaggaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaa 292
|||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 61 caaggaactttgacttctacatgtgttcacatgctggaatgatcgggactacgaggccaa 120
Query: 293 ctcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctgg 352
|||| ||||| || |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 121 ctcattatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctgg 180
Query: 353 tgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctccca 412
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctccca 240
Query: 413 tctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatgt 472
||||||| || || || ||||| || ||||| || |||||||| |||||||| |||||||
Sbjct: 241 tctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgagatgt 300
Query: 473 cggagacttcatctagccatggggggcatacctcggcgggcagcgtccctgtccaggagc 532
||||||| || || |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 301 cggagacatcctccagccatggcggccatacttcggcgggcagcgtccctgtccaggagc 360
Query: 533 tgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 361 tacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 409
>gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 656
Score = 492 bits (248), Expect = e-137
Identities = 356/392 (90%)
Strand = Plus / Plus
Query: 190 aatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttc 249
||||||||||| || |||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct: 4 aatgttccagctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttc 63
Query: 250 tacatgtgttcacatgctggaatgattgggactaccaggccaactcactatcacatcctg 309
||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| || |||
Sbjct: 64 tacatgtgttcgcatgctggaatgatcgggactacgaggccaactcattatcatattctg 123
Query: 310 catgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttac 369
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 124 catgatgagataggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttac 183
Query: 370 gtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgcccacctt 429
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 184 gtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctatgcacatctg 243
Query: 430 gcagccgcccaggttgggcagttcataaagttcgacgagatgtcggagacttcatctagc 489
||||| || ||||| || |||||||| |||||||| |||||||||||||| || || |||
Sbjct: 244 gcagcagctcaggtcggccagttcattaagttcgatgagatgtcggagacatcctccagc 303
Query: 490 catggggggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgag 549
||||| || ||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 304 catggtggccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgag 363
Query: 550 aaagtgaggagctccatgttcttctgctgagc 581
||||| |||||||| |||||||||||||||||
Sbjct: 364 aaagtcaggagctcgatgttcttctgctgagc 395
>gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 677
Score = 492 bits (248), Expect = e-137
Identities = 356/392 (90%)
Strand = Plus / Plus
Query: 190 aatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttc 249
||||||||||| || |||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct: 5 aatgttccagctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttc 64
Query: 250 tacatgtgttcacatgctggaatgattgggactaccaggccaactcactatcacatcctg 309
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || |||
Sbjct: 65 tacatgtgttcacatgctggaatgatcgggactacgaggccaactcattatcatatactg 124
Query: 310 catgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttac 369
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 125 catgatgagataggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttac 184
Query: 370 gtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgcccacctt 429
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 185 gtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctatgcacatctg 244
Query: 430 gcagccgcccaggttgggcagttcataaagttcgacgagatgtcggagacttcatctagc 489
||||| || ||||| || |||||||| |||||||| |||||||||||||| || || |||
Sbjct: 245 gcagcagctcaggtcggccagttcattaagttcgatgagatgtcggagacatcctccagc 304
Query: 490 catggggggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgag 549
||||| || ||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 305 catggcggccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgag 364
Query: 550 aaagtgaggagctccatgttcttctgctgagc 581
||||| |||||||| |||||||| ||||||||
Sbjct: 365 aaagtcaggagctcgatgttcttttgctgagc 396
>gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 5', mRNA sequence
Length = 723
Score = 484 bits (244), Expect = e-135
Identities = 376/415 (90%), Gaps = 4/415 (0%)
Strand = Plus / Plus
Query: 62 gtgctgaacattgant-gcaacaaatcattgag-cttgcaaattcttg-atgagaaatg- 117
|||||||||||||| | |||||||||||| ||| ||||||| || ||| |||| |||||
Sbjct: 309 gtgctgaacattgagttgcaacaaatcatcgaggcttgcaagtttttggatgaaaaatgg 368
Query: 118 aatcccaagttcacattgatcattgcccagaagaatcaccacactaaatttttcattcct 177
||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 369 aatccaaagttcacgttgattattgcccagaagaatcaccacactaaattttttattcct 428
Query: 178 ggaaagccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaagg 237
|||||| |||| ||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct: 429 ggaaagacagaaaatgttccagctggaactgttgtggacaacaaagtttgtcatccaagg 488
Query: 238 aacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcac 297
||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 489 aactttgacttctacatgtgttcacatgctggaatgatcgggactacgaggccaactcat 548
Query: 298 tatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcac 357
||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 tatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgcat 608
Query: 358 tcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgc 668
Query: 418 tacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatgt 472
|| || || || ||||| || ||||| || |||||||| |||||||| |||||||
Sbjct: 669 tatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgagatgt 723
>gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 3', mRNA sequence
Length = 733
Score = 476 bits (240), Expect = e-132
Identities = 375/420 (89%)
Strand = Plus / Plus
Query: 162 taaatttttcattcctggaaagccagataatgttccagccggcactgttgttgacaacaa 221
||||||||| |||||||||||| |||| ||||||||||| || |||||||| ||||||||
Sbjct: 1 taaattttttattcctggaaagacagaaaatgttccagctggaactgttgtggacaacaa 60
Query: 222 agtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaatgattgggac 281
||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 61 agtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatcgggac 120
Query: 282 taccaggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacct 341
||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 121 tacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgatgatct 180
Query: 342 gcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagt 401
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcaggagctggtgcattcgctttcttacgtgtaccaaaggagcacaacagccatatcagt 240
Query: 402 tgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagtt 461
|||||||||||| ||||| || || || ||||| || ||||| || |||||||| |||||
Sbjct: 241 tgttgctcccatttgctatgcacatctggcagcagctcaggtcggccagttcattaagtt 300
Query: 462 cgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccc 521
||| |||||||||||||| || || |||||||| || ||||| | ||||||||| |||||
Sbjct: 301 cgatgagatgtcggagacatcctccagccatggcggccatactttggcgggcagggtccc 360
Query: 522 tgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
|||||||||||| || || | ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 361 tgtccaggagctaccttgtttacatgagaaagtcaggagctcgatgttcttttgctgagc 420
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 671 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggttc 725
>gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 468 bits (236), Expect = e-130
Identities = 335/368 (91%)
Strand = Plus / Plus
Query: 214 gacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaatg 273
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1 gacaacaaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatg 60
Query: 274 attgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcct 333
|| |||||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct: 61 atcgggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcct 120
Query: 334 gatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagcc 393
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagcc 180
Query: 394 atatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttc 453
|||||||||||||||||||||||||| || || || ||||| || ||||| || ||||||
Sbjct: 181 atatcagttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttc 240
Query: 454 ataaagttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggc 513
|| |||||||| |||||||||||||| || || |||||||| || ||||| |||||||||
Sbjct: 241 attaagttcgatgagatgtcggagacatcctccagccatggcggccatacttcggcgggc 300
Query: 514 agcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttc 573
|||||||||||||||||||| || ||||| ||||||||||| |||||||| ||||||||
Sbjct: 301 agcgtccctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttt 360
Query: 574 tgctgagc 581
||||||||
Sbjct: 361 tgctgagc 368
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 619 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggttc 673
>gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 646
Score = 462 bits (233), Expect = e-128
Identities = 332/365 (90%)
Strand = Plus / Plus
Query: 217 aacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaatgatt 276
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 1 aacaaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatc 60
Query: 277 gggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcctgat 336
|||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 61 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 120
Query: 337 gacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccata 396
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccata 180
Query: 397 tcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcata 456
||||||||||||||||||||||| || || || ||||| || ||||| || ||||||||
Sbjct: 181 tcagttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcatt 240
Query: 457 aagttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagc 516
|||||||| |||||||||||||| || || |||||||| || ||||| ||||||||||||
Sbjct: 241 aagttcgatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagc 300
Query: 517 gtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgc 576
||||||||||||||||| || ||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 301 gtccctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgc 360
Query: 577 tgagc 581
|||||
Sbjct: 361 tgagc 365
>gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 635
Score = 452 bits (228), Expect = e-125
Identities = 324/356 (91%)
Strand = Plus / Plus
Query: 226 tgtcatccaaggaacttcgatttctacatgtgttcacatgctggaatgattgggactacc 285
||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 4 tgtcatccaaggaactttgacttctacatgtgttcgcatgctggaatgatcgggactacg 63
Query: 286 aggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcag 345
||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 64 aggccaactcattatcatattctgcatgatgagataggcttcaatcctgatgatctgcag 123
Query: 346 gagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 405
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 183
Query: 406 gctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgac 465
|||||||||||||| || || || ||||| || ||||| || |||||||| ||||||||
Sbjct: 184 gctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgat 243
Query: 466 gagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccctgtc 525
|||||||||||||| || || |||||||| || ||||| |||||||||||||||||||||
Sbjct: 244 gagatgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtccctgtc 303
Query: 526 caggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
|||||||| || ||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 304 caggagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctgagc 359
>gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 651
Score = 446 bits (225), Expect = e-123
Identities = 323/356 (90%)
Strand = Plus / Plus
Query: 226 tgtcatccaaggaacttcgatttctacatgtgttcacatgctggaatgattgggactacc 285
||||||||||||||||| || |||||||||||||| ||||||| |||||| ||||||||
Sbjct: 4 tgtcatccaaggaactttgacttctacatgtgttcgcatgctgnaatgatcgggactacg 63
Query: 286 aggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcag 345
||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 64 aggccaactcattatcatattctgcatgatgagataggcttcaatcctgatgatctgcag 123
Query: 346 gagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 405
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 183
Query: 406 gctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgac 465
|||||||||||||| || || || ||||| || ||||| || |||||||| ||||||||
Sbjct: 184 gctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgat 243
Query: 466 gagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccctgtc 525
|||||||||||||| || || |||||||| || ||||| |||||||||||||||||||||
Sbjct: 244 gagatgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtccctgtc 303
Query: 526 caggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
|||||||| || ||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 304 caggagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctgagc 359
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 808 gttaaaccatccttttaagcg 828
|||||||||||||||||||||
Sbjct: 631 gttaaaccatccttttaagcg 651
>gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_F05_A002 3', mRNA sequence
Length = 638
Score = 444 bits (224), Expect = e-123
Identities = 320/352 (90%)
Strand = Plus / Plus
Query: 230 atccaaggaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggc 289
||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 1 atccaaggaactttgacttctacatgtgttcacatgctggaatgatcgggactacgaggc 60
Query: 290 caactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagc 349
||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 61 caactcattatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagc 120
Query: 350 tggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctc 409
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctc 180
Query: 410 ccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgaga 469
|||||||||| || || || ||||| || ||||| || |||||||| |||||||| ||||
Sbjct: 181 ccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgaga 240
Query: 470 tgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccctgtccagg 529
|||||||||| || || |||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 241 tgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccctgtccagg 300
Query: 530 agctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
|||| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 301 agctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 352
>gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 412 bits (208), Expect = e-113
Identities = 298/328 (90%)
Strand = Plus / Plus
Query: 254 tgtgttcacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatg 313
||||||| |||||||||||||| |||||||| ||||||||||| ||||| || |||||||
Sbjct: 1 tgtgttcgcatgctggaatgatcgggactacgaggccaactcattatcatattctgcatg 60
Query: 314 acgagataggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgt 373
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 61 atgagataggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgt 120
Query: 374 accaaaggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcag 433
|||||||||||||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct: 121 accaaaggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcag 180
Query: 434 ccgcccaggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatg 493
| || ||||| || |||||||| |||||||| |||||||||||||| || || |||||||
Sbjct: 181 cagctcaggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatg 240
Query: 494 gggggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaag 553
| || ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 241 gtggccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaag 300
Query: 554 tgaggagctccatgttcttctgctgagc 581
| |||||||| |||||||||||||||||
Sbjct: 301 tcaggagctcgatgttcttctgctgagc 328
>gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 634
Score = 408 bits (206), Expect = e-112
Identities = 296/326 (90%)
Strand = Plus / Plus
Query: 256 tgttcacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgac 315
||||| |||||||||||||| |||||||| ||||||||||| ||||| || ||||||||
Sbjct: 1 tgttcgcatgctggaatgatcgggactacgaggccaactcattatcatattctgcatgat 60
Query: 316 gagataggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtac 375
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 61 gagataggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 120
Query: 376 caaaggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagcc 435
|||||||||||||||||||||||||||||||||||||||||||| || || || |||||
Sbjct: 121 caaaggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagca 180
Query: 436 gcccaggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatggg 495
|| ||||| || |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 181 gctcaggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggt 240
Query: 496 gggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtg 555
|| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 241 ggccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtc 300
Query: 556 aggagctccatgttcttctgctgagc 581
|||||||| |||||||||||||||||
Sbjct: 301 aggagctcgatgttcttctgctgagc 326
Score = 65.9 bits (33), Expect = 6e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 786 acttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||| |||| | | |||||||||||||||||||||||||||||||
Sbjct: 579 acttggaaccttgtaggatgttgttaaaccatccttttaagcgttgctggttc 631
>gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 631
Score = 402 bits (203), Expect = e-110
Identities = 293/323 (90%)
Strand = Plus / Plus
Query: 259 tcacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgag 318
||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| |||
Sbjct: 1 tcacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgag 60
Query: 319 ataggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaa 378
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 ataggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaa 120
Query: 379 aggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcc 438
||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||
Sbjct: 121 aggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagct 180
Query: 439 caggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgggggg 498
||||| || |||||||| |||||||| |||||||||||||| || || |||||||| ||
Sbjct: 181 caggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggcggc 240
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct: 241 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 300
Query: 559 agctccatgttcttctgctgagc 581
||||| |||||||| ||||||||
Sbjct: 301 agctcgatgttcttttgctgagc 323
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 574 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggttc 628
>gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 609
Score = 375 bits (189), Expect = e-102
Identities = 273/301 (90%)
Strand = Plus / Plus
Query: 281 ctaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgacc 340
|||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||| |
Sbjct: 1 ctacgaggccaactcattatcatattctgcatgatgagataggcttcaatcctgatgatc 60
Query: 341 tgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcag 400
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcag 120
Query: 401 ttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagt 460
||||||||||||||||||| || || || ||||| || ||||| || |||||||| ||||
Sbjct: 121 ttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagt 180
Query: 461 tcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtcc 520
|||| |||||||||||||| || || |||||||| || ||||| ||||||||||||||||
Sbjct: 181 tcgatgagatgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtcc 240
Query: 521 ctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgag 580
||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 241 ctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctgag 300
Query: 581 c 581
|
Sbjct: 301 c 301
Score = 65.9 bits (33), Expect = 6e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 786 acttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||| |||| | | |||||||||||||||||||||||||||||||
Sbjct: 554 acttggaaccttgtaggatgttgttaaaccatccttttaagcgttgctggttc 606
>gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 680
Score = 375 bits (189), Expect = e-102
Identities = 276/305 (90%)
Strand = Plus / Plus
Query: 277 gggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcctgat 336
|||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 68 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 127
Query: 337 gacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccata 396
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gatctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccata 187
Query: 397 tcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcata 456
||||||||||||||||||||||| || || || ||||| || ||||| || ||||||||
Sbjct: 188 tcagttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcatt 247
Query: 457 aagttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagc 516
|||||||| |||||||||||||| || || |||||||| || ||||| ||||||||||||
Sbjct: 248 aagttcgatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagc 307
Query: 517 gtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgc 576
||||||||||||||||| || ||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 308 gtccctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgc 367
Query: 577 tgagc 581
|||||
Sbjct: 368 tgagc 372
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 623 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggttc 677
>gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 355 bits (179), Expect = 4e-096
Identities = 263/291 (90%)
Strand = Plus / Plus
Query: 291 aactcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagct 350
|||||| ||||| || |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 1 aactcattatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagct 60
Query: 351 ggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 410
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 120
Query: 411 catctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagat 470
||||||||| || || || ||||| || ||||| || |||||||| |||||||| |||||
Sbjct: 121 catctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgagat 180
Query: 471 gtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccctgtccagga 530
||||||||| || || |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 181 gtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccctgtccagga 240
Query: 531 gctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
||| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 241 gctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 291
>gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 529
Score = 341 bits (172), Expect = 7e-092
Identities = 241/264 (91%)
Strand = Plus / Plus
Query: 318 gataggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtacca 377
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 4 gataggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtacca 63
Query: 378 aaggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgc 437
|||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||
Sbjct: 64 aaggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagc 123
Query: 438 ccaggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatggggg 497
||||| || |||||||| |||||||| |||||||||||||| || || |||||||| ||
Sbjct: 124 tcaggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggtgg 183
Query: 498 gcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgag 557
||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 184 ccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcag 243
Query: 558 gagctccatgttcttctgctgagc 581
|||||| |||||||||||||||||
Sbjct: 244 gagctcgatgttcttctgctgagc 267
>gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 522
Score = 305 bits (154), Expect = 4e-081
Identities = 220/242 (90%)
Strand = Plus / Plus
Query: 340 ctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatca 399
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatca 60
Query: 400 gttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaag 459
|||||||||||||||||||| || || || ||||| || ||||| || |||||||| |||
Sbjct: 61 gttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaag 120
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||||||||| || || |||||||| || ||||| |||||||||||||||
Sbjct: 121 ttcgatgagatgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtc 180
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||||||||| || ||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 181 cctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctga 240
Query: 580 gc 581
||
Sbjct: 241 gc 242
>gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 232 bits (117), Expect = 4e-059
Identities = 317/381 (83%), Gaps = 2/381 (0%)
Strand = Plus / Plus
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
|||| ||||| || ||||| ||||| || ||||| | |||||| || ||||||||||||
Sbjct: 11 ccggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtg 70
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
|||||||||| |||||||| || || ||||| || || ||||| | ||||| || ||||
Sbjct: 71 cacatgctgggatgattggaacaacaaggccgacccattatcatgttctgcacgatgaga 130
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
|||| ||| | |||| || |||||||| | || || ||||||||||| ||||| ||||
Sbjct: 131 taggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgtatcaaa 190
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
|||||||||||||||| ||||| |||||||| |||||||| ||||||||||| || ||||
Sbjct: 191 ggagcacaacagccatctcagtagttgctccaatctgctatgcccaccttgctgcagccc 250
Query: 440 aggttgggca-gttcataaagttcgacgagatgtcggagacttcatctagccatgggggg 498
||| |||||| |||| | || ||||| |||||||| || || || || ||||| || |||
Sbjct: 251 agg-tgggcacgttcctgaaattcgaggagatgtcagacacgtcctccagccagggaggg 309
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
||||||||||||||||| | || || | ||||||||| || ||||||||||||||||||
Sbjct: 310 catacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcatgagaaagtgagg 369
Query: 559 agctccatgttcttctgctga 579
|| ||||||||||||||||||
Sbjct: 370 agttccatgttcttctgctga 390
>gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 193
Score = 232 bits (117), Expect = 4e-059
Identities = 174/193 (90%)
Strand = Plus / Plus
Query: 340 ctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatca 399
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcaggagctggtgcattcgctatcttacgtgtaccaaaggagcacaacagccatatca 60
Query: 400 gttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaag 459
|||||||||||||| ||||| || || || ||||| || ||||| || |||||||| |||
Sbjct: 61 gttgttgctcccatttgctatgcacatctggcagcagctcaggtcggccagttcattaag 120
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||||||||| || || |||||||| || ||||| |||||||||||||||
Sbjct: 121 ttcgatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtc 180
Query: 520 cctgtccaggagc 532
|||||||||||||
Sbjct: 181 cctgtccaggagc 193
>gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 3', mRNA sequence
Length = 638
Score = 232 bits (117), Expect = 4e-059
Identities = 302/361 (83%), Gaps = 2/361 (0%)
Strand = Plus / Plus
Query: 220 aaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaatgattggg 279
||||| || ||||| | |||||| || |||||||||||| |||||||||| ||||||||
Sbjct: 3 aaagtttgccatcctaagaactttgacttctacatgtgtgcacatgctgggatgattgga 62
Query: 280 actaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcctgatgac 339
|| || ||||| || || ||||| | ||||| || |||||||| ||| | |||| ||
Sbjct: 63 acaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgacgaa 122
Query: 340 ctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatca 399
|||||||| | || || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 123 atgcaggagtttgttcattcgctctcttacgtgtatcaaaggagcacaacagccatctca 182
Query: 400 gttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaa 458
|| |||||||| |||||||| ||||||||||| || ||||||| |||||| |||| | ||
Sbjct: 183 gtagttgctccaatctgctatgcccaccttgctgcagcccagg-tgggcacgttcctgaa 241
Query: 459 gttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgt 518
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 242 attcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgc 301
Query: 519 ccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctg 578
|| || | ||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 302 tcccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctg 361
Query: 579 a 579
|
Sbjct: 362 a 362
>gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1523
Score = 232 bits (117), Expect = 4e-059
Identities = 317/381 (83%), Gaps = 2/381 (0%)
Strand = Plus / Minus
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
|||| ||||| || ||||| ||||| || ||||| | |||||| || ||||||||||||
Sbjct: 682 ccggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtg 623
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
|||||||||| |||||||| || || ||||| || || ||||| | ||||| || ||||
Sbjct: 622 cacatgctgggatgattggaacaacaaggccgacccattatcatgttctgcacgatgaga 563
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
|||| ||| | |||| || |||||||| | || || ||||||||||| ||||| ||||
Sbjct: 562 taggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgtatcaaa 503
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
| |||||||||||||| ||||| |||||||| |||||||||||||||||||| || ||||
Sbjct: 502 gaagcacaacagccatctcagtagttgctccaatctgctacgcccaccttgctgcagccc 443
Query: 440 aggttgggca-gttcataaagttcgacgagatgtcggagacttcatctagccatgggggg 498
||| |||||| |||| | || ||||| |||||||| || || || || ||||| || |||
Sbjct: 442 agg-tgggcacgttcctgaaattcgaggagatgtcagacacgtcctccagccagggaggg 384
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
||||||||||||||||| | || || | ||||||||| || ||||||||||||||||||
Sbjct: 383 catacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcatgagaaagtgagg 324
Query: 559 agctccatgttcttctgctga 579
|| ||||||||||||||||||
Sbjct: 323 agttccatgttcttctgctga 303
>gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 228 bits (115), Expect = 7e-058
Identities = 306/367 (83%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 214 gacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaatg 273
||||| ||||| || ||||| | |||||| || |||||||||||| |||||||||| |||
Sbjct: 7 gacaataaagtttgccatcctaagaactttgacttctacatgtgtgcacatgctgggatg 66
Query: 274 attgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcct 333
||||| || || ||||| || || ||||| | ||||| || |||||||| ||| | ||
Sbjct: 67 attggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgct 126
Query: 334 gatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagcc 393
|| || |||||||| | || || ||||||||||| ||||| ||||| ||||||||||||
Sbjct: 127 gacgaaatgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagcc 186
Query: 394 atatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gtt 452
|| ||||| |||||||| |||||||||||||||||||| || ||||||| |||||| |||
Sbjct: 187 atctcagtagttgctccaatctgctacgcccaccttgctgcagcccagg-tgggcacgtt 245
Query: 453 cataaagttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcggg 512
| | || ||||| |||||||| || || || || ||||| || |||||||||||||||||
Sbjct: 246 cctgaaattcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcggg 305
Query: 513 cagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttctt 572
||| | || || | ||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 306 cagtgctcccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttctt 365
Query: 573 ctgctga 579
|||||||
Sbjct: 366 ctgctga 372
>gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 550
Score = 190 bits (96), Expect = 1e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 341 tgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcag 400
|||||||| | || || ||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 56 tgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctcag 115
Query: 401 ttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaag 459
| |||||||| |||||||||||||||||||| || ||||||| |||||| |||| | ||
Sbjct: 116 tagttgctccaatctgctacgcccaccttgctgcagcccagg-tgggcacgttcctgaaa 174
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 175 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 234
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| || | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 235 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 294
>gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 190 bits (96), Expect = 1e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 341 tgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcag 400
|||||||| | || || ||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 37 tgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctcag 96
Query: 401 ttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaag 459
| |||||||| |||||||||||||||||||| || ||||||| |||||| |||| | ||
Sbjct: 97 tagttgctccaatctgctacgcccaccttgctgcagcccagg-tgggcacgttcctgaaa 155
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 156 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 215
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| || | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 216 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 275
>gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 324
Score = 190 bits (96), Expect = 1e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 341 tgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcag 400
|||||||| | || || ||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 17 tgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctcag 76
Query: 401 ttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaag 459
| |||||||| |||||||||||||||||||| || ||||||| |||||| |||| | ||
Sbjct: 77 tagttgctccaatctgctacgcccaccttgctgcagcccagg-tgggcacgttcctgaaa 135
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 136 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 195
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| || | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 196 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 255
>gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 190 bits (96), Expect = 1e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 341 tgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcag 400
|||||||| | || || ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 53 tgcaggagtttgttcattcgctctcttatgtgtatcaaaggagcacaacagccatctcag 112
Query: 401 ttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaag 459
| |||||||| |||||||| ||||||||||| || ||||||| |||||| |||| | ||
Sbjct: 113 tagttgctccaatctgctatgcccaccttgctgcagcccagg-tgggcacgttcctgaaa 171
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 172 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 231
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| || | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 232 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 291
>gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_F09_A011 3', mRNA sequence
Length = 585
Score = 190 bits (96), Expect = 1e-046
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 341 tgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcag 400
|||||||| | || || ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 28 tgcaggagtttgttcattcgctctcttatgtgtatcaaaggagcacaacagccatctcag 87
Query: 401 ttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaag 459
| |||||||| |||||||| ||||||||||| || ||||||| |||||| |||| | ||
Sbjct: 88 tagttgctccaatctgctatgcccaccttgctgcagcccagg-tgggcacgttcctgaaa 146
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 147 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 206
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| || | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 207 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 266
>gb|BF421769.1|BF421769 FM1_16_D05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 485
Score = 182 bits (92), Expect = 4e-044
Identities = 192/223 (86%), Gaps = 2/223 (0%)
Strand = Plus / Plus
Query: 358 tcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgc 417
||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct: 13 tcgctctcttatgtgtatcaaagaagcacaacagccatctcagtagttgctccaatctgc 72
Query: 418 tacgcccaccttgcagccgcccaggttgggca-gttcataaagttcgacgagatgtcgga 476
|||||||||||||| || || |||| |||||| |||| | || ||||| |||||||| ||
Sbjct: 73 tacgcccaccttgctgcagcncagg-tgggcacgttcctgaaattcgaggagatgtcaga 131
Query: 477 gacttcatctagccatggggggcatacctcggcgggcagcgtccctgtccaggagctgcc 536
|| || || ||||| || |||||||||||||||||||| | || || | |||||||||
Sbjct: 132 cacgtcctccagccagggagggcatacctcggcgggcagtgctcccgtgccggagctgcc 191
Query: 537 ccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 192 tcgcctgcatgagaaagtgaggagttccatgttcttctgctga 234
>gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 360
Score = 182 bits (92), Expect = 4e-044
Identities = 205/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 341 tgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcag 400
|||||||| | || || ||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 35 tgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctcag 94
Query: 401 ttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaag 459
| |||||||| |||||||||||||||||||| || ||||||| |||||| |||| | ||
Sbjct: 95 tagttgctccaatctgctacgcccaccttgctgcagcccagg-tgggcacgttcctgaaa 153
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 154 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 213
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| || | ||||||||| || |||||||||||||||||||| || |||||||||||||||
Sbjct: 214 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttcgatgttcttctgctga 273
>gb|CW234191.1|CW234191 104_687_11213849_148_37382_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213849, DNA
sequence
Length = 712
Score = 180 bits (91), Expect = 1e-043
Identities = 157/179 (87%)
Strand = Plus / Plus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||||||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 119 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 178
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
|| |||||||||||||| || || |||||||| || ||||| ||||||||||||||||||
Sbjct: 179 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 238
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
||||||||||| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 239 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 297
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 548 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggttc 602
>gb|CW253695.1|CW253695 104_717_11225238_116_35111_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225238, DNA
sequence
Length = 745
Score = 180 bits (91), Expect = 1e-043
Identities = 157/179 (87%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||||||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 738 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 679
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
|| |||||||||||||| || || |||||||| || ||||| ||||||||||||||||||
Sbjct: 678 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 619
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
||||||||||| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 618 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 560
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 309 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggttc 255
>gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225238, DNA
sequence
Length = 665
Score = 180 bits (91), Expect = 1e-043
Identities = 157/179 (87%)
Strand = Plus / Plus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||||||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 321 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 380
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
|| |||||||||||||| || || |||||||| || ||||| ||||||||||||||||||
Sbjct: 381 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 440
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
||||||||||| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 441 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 499
Score = 117 bits (59), Expect = 2e-024
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 292 actcactatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctg 351
||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 1 actcattatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctg 60
Query: 352 gtgcactcgctctcttacgtgta 374
||||| |||||||||||||||||
Sbjct: 61 gtgcattcgctctcttacgtgta 83
Score = 63.9 bits (32), Expect = 2e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 372 gtaccaaaggagcacaacagccatatcagttg 403
||||||||||||||||||||||||||||||||
Sbjct: 185 gtaccaaaggagcacaacagccatatcagttg 216
>gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f163m16, DNA
sequence
Length = 725
Score = 180 bits (91), Expect = 1e-043
Identities = 157/179 (87%)
Strand = Plus / Plus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||||||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 390 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 449
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
|| |||||||||||||| || || |||||||| || ||||| ||||||||||||||||||
Sbjct: 450 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 509
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
||||||||||| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 510 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 568
Score = 139 bits (70), Expect = 5e-031
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 277 gggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcctgat 336
|||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 55 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 114
Query: 337 gacctgcaggagctggtgcactcgctctcttacgtgta 374
|| ||||||||||||||||| |||||||||||||||||
Sbjct: 115 gatctgcaggagctggtgcattcgctctcttacgtgta 152
Score = 63.9 bits (32), Expect = 2e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 372 gtaccaaaggagcacaacagccatatcagttg 403
||||||||||||||||||||||||||||||||
Sbjct: 254 gtaccaaaggagcacaacagccatatcagttg 285
>gb|CW452021.1|CW452021 fsbb001f192f20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f20, DNA
sequence
Length = 684
Score = 180 bits (91), Expect = 1e-043
Identities = 157/179 (87%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttc 462
||||||||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 613 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 554
Query: 463 gacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccct 522
|| |||||||||||||| || || |||||||| || ||||| ||||||||||||||||||
Sbjct: 553 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 494
Query: 523 gtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
||||||||||| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 493 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 435
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 184 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggttc 130
>gb|BI211863.1|BI211863 IP1_62_D02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 163 bits (82), Expect = 3e-038
Identities = 148/170 (87%)
Strand = Plus / Plus
Query: 412 atctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatg 471
|||||||| || || || ||||| || ||||| || |||||||| |||||||| ||||||
Sbjct: 1 atctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgagatg 60
Query: 472 tcggagacttcatctagccatggggggcatacctcggcgggcagcgtccctgtccaggag 531
|||||||| || || |||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 61 tcggagacatcctccagccatggcggccatacttcggcgggcagcgtccctgtccaggag 120
Query: 532 ctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctgagc 581
|| || ||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 121 ctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagc 170
Score = 77.8 bits (39), Expect = 2e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggttc 838
||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 421 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggttc 475
>gb|BI140331.1|BI140331 IP1_52_A07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 465
Score = 159 bits (80), Expect = 5e-037
Identities = 134/152 (88%)
Strand = Plus / Plus
Query: 430 gcagccgcccaggttgggcagttcataaagttcgacgagatgtcggagacttcatctagc 489
||||| || ||||| || |||||||| |||||||| |||||||||||||| || || |||
Sbjct: 7 gcagcagctcaggtcggccagttcattaagttcgatgagatgtcggagacatcctccagc 66
Query: 490 catggggggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgag 549
||||| || ||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 67 catggcggccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgag 126
Query: 550 aaagtgaggagctccatgttcttctgctgagc 581
||||| |||||||| |||||||| ||||||||
Sbjct: 127 aaagtcaggagctcgatgttcttttgctgagc 158
Score = 75.8 bits (38), Expect = 6e-012
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 784 agacttggaacctggtagcacgccgttaaaccatccttttaagcgttgctggtt 837
||||||||||||| |||| | | |||||||||||||||||||||||||||||||
Sbjct: 409 agacttggaaccttgtaggatgtcgttaaaccatccttttaagcgttgctggtt 462
>gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 143 bits (72), Expect = 3e-032
Identities = 201/240 (83%), Gaps = 3/240 (1%)
Strand = Plus / Plus
Query: 341 tgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcag 400
|||||||| | || || ||||||||||| ||| | |||||||||||||||||||| ||||
Sbjct: 15 tgcaggagtttgttcattcgctctcttatgtg-atcaaaggagcacaacagccatttcag 73
Query: 401 ttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaag 459
| |||||||| || ||||| ||||||||||| || ||||||| |||||| |||| | ||
Sbjct: 74 tagttgctccaatttgctatgcccaccttgctgcagcccagg-tgggcacgttcctgaaa 132
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 133 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 192
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| || | ||||||||| | |||||||||||||||||||| |||||||| || ||||||
Sbjct: 193 cccgtgccggagctgccttgcctgcatgagaaagtgaggagttccatgtttttttgctga 252
>gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f20, DNA
sequence
Length = 703
Score = 139 bits (70), Expect = 5e-031
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 277 gggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatcctgat 336
|||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 457 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 516
Query: 337 gacctgcaggagctggtgcactcgctctcttacgtgta 374
|| ||||||||||||||||| |||||||||||||||||
Sbjct: 517 gatctgcaggagctggtgcattcgctctcttacgtgta 554
Score = 109 bits (55), Expect = 4e-022
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 65 actgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgttcacat 124
Query: 265 gctggaatgat 275
|||||||||||
Sbjct: 125 gctggaatgat 135
Score = 63.9 bits (32), Expect = 2e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 372 gtaccaaaggagcacaacagccatatcagttg 403
||||||||||||||||||||||||||||||||
Sbjct: 656 gtaccaaaggagcacaacagccatatcagttg 687
>gb|CL153692.1|CL153692 104_338_10780894_114_31369_142 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780894, DNA
sequence
Length = 674
Score = 135 bits (68), Expect = 8e-030
Identities = 151/176 (85%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 405 tgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaagttcg 463
||||||||||||||| ||||||||||| || |||||||| ||||| |||| | || ||||
Sbjct: 1 tgctcccatctgctatgcccaccttgctgcagcccaggt-gggcacgttcctgaaattcg 59
Query: 464 acgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccctg 523
| |||||||| || || || || ||||| || |||||||||||||||||||| | || |
Sbjct: 60 aggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctcccg 119
Query: 524 tccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
| | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 120 tgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 175
>gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891763, DNA
sequence
Length = 743
Score = 131 bits (66), Expect = 1e-028
Identities = 152/178 (85%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaagtt 461
|||||||| |||||||| ||||||||||| || |||||||| ||||| |||| | || ||
Sbjct: 303 gttgctccaatctgctatgcccaccttgctgcagcccaggt-gggcacgttcctgaaatt 361
Query: 462 cgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccc 521
||| |||||||| || || || || ||||| || |||||||||||||||||||| | ||
Sbjct: 362 cgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctcc 421
Query: 522 tgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 422 cgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 479
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 376 caaaggagcacaacagccatatcagt 401
|||||||||||||||||||| |||||
Sbjct: 179 caaaggagcacaacagccatctcagt 204
>gb|CW041427.1|CW041427 104_274_10506544_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506544, DNA
sequence
Length = 700
Score = 131 bits (66), Expect = 1e-028
Identities = 152/178 (85%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaagtt 461
|||||||| |||||||| ||||||||||| || |||||||| ||||| |||| | || ||
Sbjct: 503 gttgctccaatctgctatgcccaccttgctgcagcccaggt-gggcacgttcctgaaatt 445
Query: 462 cgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccc 521
||| |||||||| || || || || ||||| || |||||||||||||||||||| | ||
Sbjct: 444 cgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctcc 385
Query: 522 tgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 cgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 327
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 376 caaaggagcacaacagccatatcagt 401
|||||||||||||||||||| |||||
Sbjct: 627 caaaggagcacaacagccatctcagt 602
>gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945316, DNA
sequence
Length = 625
Score = 131 bits (66), Expect = 1e-028
Identities = 152/178 (85%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaagtt 461
|||||||| |||||||| ||||||||||| || |||||||| ||||| |||| | || ||
Sbjct: 377 gttgctccaatctgctatgcccaccttgctgcagcccaggt-gggcacgttcctgaaatt 319
Query: 462 cgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccc 521
||| |||||||| || || || || ||||| || |||||||||||||||||||| | ||
Sbjct: 318 cgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctcc 259
Query: 522 tgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 258 cgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 201
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 376 caaaggagcacaacagccatatcagt 401
|||||||||||||||||||| |||||
Sbjct: 501 caaaggagcacaacagccatctcagt 476
>gb|CW168693.1|CW168693 104_578_11154280_148_36605_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154280, DNA
sequence
Length = 692
Score = 131 bits (66), Expect = 1e-028
Identities = 152/178 (85%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 403 gttgctcccatctgctacgcccaccttgcagccgcccaggttgggca-gttcataaagtt 461
|||||||| |||||||| ||||||||||| || |||||||| ||||| |||| | || ||
Sbjct: 395 gttgctccaatctgctatgcccaccttgctgcagcccaggt-gggcacgttcctgaaatt 453
Query: 462 cgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccc 521
||| |||||||| || || || || ||||| || |||||||||||||||||||| | ||
Sbjct: 454 cgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctcc 513
Query: 522 tgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 514 cgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 571
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 376 caaaggagcacaacagccatatcagt 401
|||||||||||||||||||| |||||
Sbjct: 271 caaaggagcacaacagccatctcagt 296
>gb|CW280850.1|CW280850 104_756_11407852_116_35452_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407852, DNA
sequence
Length = 525
Score = 103 bits (52), Expect = 3e-020
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 460 ttcgacgagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtc 519
||||| |||||||| || || || || ||||| || |||||||||||||||||||| |
Sbjct: 13 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 72
Query: 520 cctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|| || | ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 73 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 132
>gb|CL153693.1|CL153693 104_338_10780894_116_31370_142 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780894, DNA
sequence
Length = 710
Score = 99.6 bits (50), Expect = 4e-019
Identities = 98/114 (85%)
Strand = Plus / Minus
Query: 466 gagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccctgtc 525
|||||||| || || || || ||||| || |||||||||||||||||||| | || ||
Sbjct: 708 gagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctcccgtg 649
Query: 526 caggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
| ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 648 ccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 595
>gb|BF656320.1|BF656320 FM1_49_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 427
Score = 99.6 bits (50), Expect = 4e-019
Identities = 98/114 (85%)
Strand = Plus / Plus
Query: 466 gagatgtcggagacttcatctagccatggggggcatacctcggcgggcagcgtccctgtc 525
|||||||| || || || || ||||| || |||||||||||||||||||| | || ||
Sbjct: 30 gagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctcccgtg 89
Query: 526 caggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
| ||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 90 ccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 143
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199,014
Number of Sequences: 832831
Number of extensions: 199014
Number of successful extensions: 53502
Number of sequences better than 0.5: 71
Number of HSP's better than 0.5 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53279
Number of HSP's gapped (non-prelim): 179
length of query: 867
length of database: 491,359,669
effective HSP length: 20
effective length of query: 847
effective length of database: 474,703,049
effective search space: 402073482503
effective search space used: 402073482503
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)