BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF480416.1|CF480416 POL1_65_D08.g1_A002 Pollen Sorghum b... 934 0.0
gb|CF433410.1|CF433410 NIT1_26_A02.g1_A002 Nitrogen-deficie... 922 0.0
gb|CD223680.1|CD223680 CCC1_29_B01.g1_A007 Callus culture/c... 817 0.0
gb|BM322294.1|BM322294 PIC1_2_F10.b1_A002 Pathogen-infected... 795 0.0
gb|CD233078.1|CD233078 SS1_11_A10.g1_A012 Salt-stressed see... 791 0.0
gb|CD234806.1|CD234806 SS1_18_D09.b1_A012 Salt-stressed see... 747 0.0
gb|CF480338.1|CF480338 POL1_65_D08.b1_A002 Pollen Sorghum b... 716 0.0
gb|CD228919.1|CD228919 CCC1_10_G08.g1_A007 Callus culture/c... 704 0.0
gb|CD232987.1|CD232987 SS1_11_A10.b1_A012 Salt-stressed see... 694 0.0
gb|CD463627.1|CD463627 ETH1_45_D01.g1_A002 Ethylene-treated... 694 0.0
gb|CD228816.1|CD228816 CCC1_10_G08.b1_A007 Callus culture/c... 668 0.0
gb|CF433280.1|CF433280 NIT1_26_A02.b1_A002 Nitrogen-deficie... 664 0.0
gb|BM326779.1|BM326779 PIC1_2_F10.g1_A002 Pathogen-infected... 652 0.0
gb|CF757975.1|CF757975 DSAF1_25_F12.g1_A011 Drought-stresse... 624 e-177
gb|CD223653.1|CD223653 CCC1_29_B01.b1_A007 Callus culture/c... 605 e-171
gb|CD463575.1|CD463575 ETH1_45_D01.b1_A002 Ethylene-treated... 436 e-120
gb|CD208619.1|CD208619 HS1_39_A04.b1_A012 Heat-shocked seed... 392 e-107
gb|BI246108.1|BI246108 IP1_68_H09.b1_A002 Immature pannicle... 351 8e-095
gb|CD234900.1|CD234900 SS1_18_D09.g1_A012 Salt-stressed see... 287 1e-075
gb|BI245689.1|BI245689 IP1_68_H09.g1_A002 Immature pannicle... 283 2e-074
gb|CD208712.1|CD208712 HS1_39_A04.g1_A012 Heat-shocked seed... 260 2e-067
gb|CF771047.1|CF771047 DSBF1_13_C01.g1_A010 Drought-stresse... 155 1e-035
gb|CF770339.1|CF770339 DSBF1_7_D12.b1_A010 Drought-stressed... 96 8e-018
gb|CF770421.1|CF770421 DSBF1_7_D12.g1_A010 Drought-stressed... 96 8e-018
gb|BG933257.1|BG933257 WS1_92_B11.g1_A002 Water-stressed 1 ... 88 2e-015
gb|CN141540.1|CN141540 OX1_52_G03.b1_A002 Oxidatively-stres... 88 2e-015
gb|CD222489.1|CD222489 CCC1_22_E05.b1_A007 Callus culture/c... 74 3e-011
gb|BE592931.1|BE592931 WS1_92_B11.b1_A002 Water-stressed 1 ... 68 2e-009
gb|AW284395.1|AW284395 LG1_289_B01.g1_A002 Light Grown 1 (L... 60 4e-007
gb|BE361887.1|BE361887 DG1_82_H10.g1_A002 Dark Grown 1 (DG1... 60 4e-007
gb|BE592865.1|BE592865 WS1_91_D06.b1_A002 Water-stressed 1 ... 60 4e-007
gb|BF655787.1|BF655787 FM1_41_C03.g1_A003 Floral-Induced Me... 60 4e-007
gb|BG559198.1|BG559198 RHIZ2_55_G11.g1_A003 Rhizome2 (RHIZ2... 60 4e-007
gb|BG933195.1|BG933195 WS1_91_D06.g1_A002 Water-stressed 1 ... 60 4e-007
gb|CW283523.1|CW283523 104_760_11409292_116_35484_016 Sorgh... 56 7e-006
gb|CW283524.1|CW283524 104_760_11409292_148_35488_016 Sorgh... 56 7e-006
gb|CW284825.1|CW284825 104_761_11410003_116_35489_066 Sorgh... 56 7e-006
gb|CW284826.1|CW284826 104_761_11410003_148_35493_066 Sorgh... 56 7e-006
gb|CN132118.1|CN132118 OX1_4_E06.b1_A002 Oxidatively-stress... 54 3e-005
gb|CW065796.1|CW065796 104_312_10523341_115_30130 Sorghum m... 52 1e-004
gb|CW229688.1|CW229688 104_671_11207443_116_37267_078 Sorgh... 52 1e-004
gb|BZ340837.1|BZ340837 ic41d03.g1 WGS-SbicolorF (JM107 adap... 48 0.002
gb|CW353684.1|CW353684 fsbb001f016i16f0 Sorghum methylation... 48 0.002
gb|CW353685.1|CW353685 fsbb001f016i16k0 Sorghum methylation... 48 0.002
gb|AW679802.1|AW679802 WS1_32_A01.g1_A002 Water-stressed 1 ... 48 0.002
gb|CL186339.1|CL186339 104_401_10900143_116_32410_062 Sorgh... 46 0.007
gb|CW245268.1|CW245268 104_706_11220950_116_35081_059 Sorgh... 46 0.007
gb|CW245269.1|CW245269 104_706_11220950_116_37600_059 Sorgh... 46 0.007
gb|CW245270.1|CW245270 104_706_11220950_148_35077_059 Sorgh... 46 0.007
gb|CW245271.1|CW245271 104_706_11220950_148_37599_059 Sorgh... 46 0.007
gb|CW302104.1|CW302104 104_786_11464548_148_35669_046 Sorgh... 46 0.007
gb|CD213354.1|CD213354 HS1_40_H06.b1_A012 Heat-shocked seed... 46 0.007
gb|CF484060.1|CF484060 POL1_2_H06.g1_A002 Pollen Sorghum bi... 46 0.007
gb|CF486098.1|CF486098 POL1_35_E05.g1_A002 Pollen Sorghum b... 46 0.007
gb|CW057566.1|CW057566 104_299_10518290_115_30171 Sorghum m... 44 0.026
gb|CW097546.1|CW097546 104_463_11002517_116_34344_019 Sorgh... 44 0.026
gb|CW417854.1|CW417854 fsbb001f121a23k0 Sorghum methylation... 44 0.026
gb|CW451095.1|CW451095 fsbb001f191a12f0 Sorghum methylation... 44 0.026
gb|BE366912.1|BE366912 PI1_42_B12.b1_A002 Pathogen induced ... 44 0.026
gb|BE366982.1|BE366982 PI1_42_B12.g1_A002 Pathogen induced ... 44 0.026
gb|BE592720.1|BE592720 WS1_95_D11.g1_A002 Water-stressed 1 ... 44 0.026
gb|CB927637.1|CB927637 ABA1_27_E06.b1_A012 Abscisic acid-tr... 44 0.026
gb|CF760873.1|CF760873 DSAF1_67_H05.b1_A011 Drought-stresse... 44 0.026
gb|CF761093.1|CF761093 DSAF1_71_A05.b1_A011 Drought-stresse... 44 0.026
gb|CF761608.1|CF761608 DSAF1_78_E04.b1_A011 Drought-stresse... 44 0.026
gb|CW049587.1|CW049587 104_288_10514120_114_30200 Sorghum m... 42 0.10
gb|CW375055.1|CW375055 fsbb001f052d22f0 Sorghum methylation... 42 0.10
gb|CF771492.1|CF771492 DSBF1_20_C01.g1_A010 Drought-stresse... 42 0.10
gb|CW049772.1|CW049772 104_289_10514246_115_30204 Sorghum m... 40 0.41
gb|CF756886.1|CF756886 DSAF1_10_G11.g1_A011 Drought-stresse... 40 0.41
gb|CN149902.1|CN149902 WOUND1_65_D02.g1_A002 Wounded leaves... 40 0.41
>gb|CF480416.1|CF480416 POL1_65_D08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_D08_A002 5', mRNA sequence
Length = 801
Score = 934 bits (471), Expect = 0.0
Identities = 558/583 (95%), Gaps = 3/583 (0%)
Strand = Plus / Minus
Query: 492 tccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagca 551
|||||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||
Sbjct: 801 tccggatccacaactacatattgctt-aagagtctgtcaccaaaagctcgcgaaacagca 743
Query: 552 agtacaccaccaacgcg-ccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
|||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 742 agtacaccaccaacacgnccatgttcctgcccacatcacgaaacctccagcctcttcaat 683
Query: 611 acgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttcc 670
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 682 acgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagggatagcatttcc 623
Query: 671 ttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgatcaccaac 730
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 622 ttccctgcatatgatagccctagagtcaccaacatttgcgacaaagagacgatcaccaac 563
Query: 731 aa-gtacagcagttgatgcagttgacccacattgattttgactactgtcagattctaaga 789
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 562 aangtacagcagttgatgcagtcgacccacattgattttgactactgtcagattctaaga 503
Query: 790 attcactgtcggtgcttttataagcatcatctatagcgactttagtatcactgatgaact 849
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 502 attcactgtcggtgcttttataagcatcatctatagcaaccttagtatcactcatgaact 443
Query: 850 ttggatgactaacaagattgttgaacaggttttctttaacatactctgctaccttagcac 909
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 442 ttggatgactaacaagattgttgaacaagttttctttaacatactctgctactttagcac 383
Query: 910 caccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaattt 969
|||||||||| |||||||||||||||||||||| |||||| || |||||||| |||||||
Sbjct: 382 caccatgaccgtcaaaaactccaaaaagaccaattatctgaccgtcaacacagtcaattt 323
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 263
Query: 1030 taaatctaccattctggctgaggccgccgccgctgacggagga 1072
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 262 taaatttaccattctggctgaggccgccgccgctgacggagga 220
>gb|CF433410.1|CF433410 NIT1_26_A02.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_26_A02_A002 5', mRNA sequence
Length = 718
Score = 922 bits (465), Expect = 0.0
Identities = 525/545 (96%)
Strand = Plus / Minus
Query: 528 tcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatc 587
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 718 tcaccaaaagctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatc 659
Query: 588 acaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcc 647
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 acgaaacctccagcctcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcc 599
Query: 648 tttgaaacagcaatagcatttccttccctgcatatgatagccctagagtcaccaacattt 707
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tttgaaacagggatagcatttccttccctgcatatgatagccctagagtcaccaacattt 539
Query: 708 gcgacgaagagacgatcaccaacaagtacagcagttgatgcagttgacccacattgattt 767
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 538 gcgacaaagagacgatcaccaacaagtacagcagttgatgcagtcgacccacattgattt 479
Query: 768 tgactactgtcagattctaagaattcactgtcggtgcttttataagcatcatctatagcg 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgactactgtcagattctaagaattcactgtcggtgcttttataagcatcatctatagca 419
Query: 828 actttagtatcactgatgaactttggatgactaacaagattgttgaacaggttttcttta 887
|| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 418 accttagtatcactcatgaactttggatgactaacaagattgttgaacaagttttcttta 359
Query: 888 acatactctgctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatc 947
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 358 acatactctgctactttagcaccaccatgaccgtcaaaaactccaaaaagaccaattatc 299
Query: 948 tggccatcaacacaatcaatttttgtctcatagaagtcttccatggatgcccttttacca 1007
|| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgaccgtcaacacagtcaattttcgtctcatagaagtcttccatggatgcccttttacca 239
Query: 1008 ggggagcttgcatagccatagctaaatctaccattctggctgaggccgccgccgctgacg 1067
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 238 ggggagcttgcatagccatagctaaatttaccattctggctgaggccgccgccgctgacg 179
Query: 1068 gagga 1072
|||||
Sbjct: 178 gagga 174
>gb|CD223680.1|CD223680 CCC1_29_B01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_29_B01_A007 5', mRNA sequence
Length = 650
Score = 817 bits (412), Expect = 0.0
Identities = 463/480 (96%)
Strand = Plus / Minus
Query: 595 ctccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaa 654
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ctccagcctcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaa 591
Query: 655 cagcaatagcatttccttccctgcatatgatagccctagagtcaccaacatttgcgacga 714
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 590 cagggatagcatttccttccctgcatatgatagccctagagtcaccaacatttgcgacaa 531
Query: 715 agagacgatcaccaacaagtacagcagttgatgcagttgacccacattgattttgactac 774
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 530 agagacgatcaccaacaagtacagcagttgatgcagtcgacccacattgattttgactac 471
Query: 775 tgtcagattctaagaattcactgtcggtgcttttataagcatcatctatagcgactttag 834
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 470 tgtcagattctaagaattcactgtcggtgcttttataagcatcatctatagcaaccttag 411
Query: 835 tatcactgatgaactttggatgactaacaagattgttgaacaggttttctttaacatact 894
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 410 tatcactcatgaactttggatgactaacaagattgttgaacaagttttctttaacatact 351
Query: 895 ctgctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccat 954
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| || |
Sbjct: 350 ctgctactttagcaccaccatgaccgtcaaaaactccaaaaagaccaattatctgaccgt 291
Query: 955 caacacaatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagc 1014
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 caacacagtcaattttcgtctcatagaagtcttccatggatgcccttttaccaggggagc 231
Query: 1015 ttgcatagccatagctaaatctaccattctggctgaggccgccgccgctgacggaggatc 1074
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ttgcatagccatagctaaatttaccattctggctgaggccgccgccgctgacggaggatc 171
>gb|BM322294.1|BM322294 PIC1_2_F10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 533
Score = 795 bits (401), Expect = 0.0
Identities = 451/468 (96%)
Strand = Plus / Minus
Query: 605 ttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagc 664
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 533 ttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctntgaaacagggatagc 474
Query: 665 atttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgatc 724
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 473 atttccttccctgcatatgatagccctagagtcaccaacatttgcgacaaagagacgatc 414
Query: 725 accaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagattc 784
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 413 accaacaagtacagcagttgatgcagtcgacccacattgattttgactactgtcagattc 354
Query: 785 taagaattcactgtcggtgcttttataagcatcatctatagcgactttagtatcactgat 844
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 353 taagaattcactgtcggtgcttttataagcatcatctatagcaaccttagtatcactcat 294
Query: 845 gaactttggatgactaacaagattgttgaacaggttttctttaacatactctgctacctt 904
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 293 gaactttggatgactaacaagattgttgaacaagttttctttaacatactctgctacttt 234
Query: 905 agcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatc 964
||||||||||||||| |||||||||||||||||||||| |||||| || |||||||| ||
Sbjct: 233 agcaccaccatgaccgtcaaaaactccaaaaagaccaattatctgaccgtcaacacagtc 174
Query: 965 aatttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcc 1024
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aattttcgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcc 114
Query: 1025 atagctaaatctaccattctggctgaggccgccgccgctgacggagga 1072
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113 atagctaaatttaccattctggctgaggccgccgccgctgacggagga 66
>gb|CD233078.1|CD233078 SS1_11_A10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_11_A10_A012 5', mRNA sequence
Length = 645
Score = 791 bits (399), Expect = 0.0
Identities = 450/467 (96%)
Strand = Plus / Minus
Query: 606 tcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagca 665
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 645 tcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagggatagca 586
Query: 666 tttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgatca 725
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 585 tttccttccctgcatatgatagccctagagtcaccaacatttgcgacaaagagacgatca 526
Query: 726 ccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcagattct 785
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 525 ccaacaagtacagcagttgatgcagtcgacccacattgattttgactactgtcagattct 466
Query: 786 aagaattcactgtcggtgcttttataagcatcatctatagcgactttagtatcactgatg 845
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 465 aagaattcactgtcggtgcttttataagcatcatctatagcaaccttagtatcactcatg 406
Query: 846 aactttggatgactaacaagattgttgaacaggttttctttaacatactctgctacctta 905
|||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 405 aactttggatgactaacaagattgttgatcaagttttctttaacatactctgctacttta 346
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
|||||||||||||| |||||||||||||||||||||| |||||| || |||||||| |||
Sbjct: 345 gcaccaccatgaccgtcaaaaactccaaaaagaccaattatctgaccgtcaacacagtca 286
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 attttcgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 226
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgctgacggagga 1072
||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 225 tagctaaatttaccattctggctgaggccgccgccgctgacggagga 179
>gb|CD234806.1|CD234806 SS1_18_D09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_18_D09_A012 3', mRNA sequence
Length = 648
Score = 747 bits (377), Expect = 0.0
Identities = 482/516 (93%), Gaps = 2/516 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 516 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 457
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 456 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 397
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 396 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 337
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 336 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 277
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 276 agagacaacatcccacagcccatcacttgcaaggatgagaaactcaagtgtgtcatcgac 217
Query: 476 aacctcctctcggatctccggatccacaaccacatattgctttaagagtttgtcaccaaa 535
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 216 aacttcctctcggatctccggatccacaactacatattgctttaagagtttgtcaccaaa 157
Query: 536 agcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc 595
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 156 agctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatcacgaaacc 97
Query: 596 tccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaac 655
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 tccagcctcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaac 37
Query: 656 agcaatagcatttccttccctgcatatgatagccct 691
|| ||||||||||||||||||||||||||||||||
Sbjct: 36 agggatagcatttccttccctgcatatgatagccct 1
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 572 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 515
>gb|CF480338.1|CF480338 POL1_65_D08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_D08_A002 3', mRNA sequence
Length = 709
Score = 716 bits (361), Expect = 0.0
Identities = 472/508 (92%), Gaps = 2/508 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 508 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 449
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 448 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 389
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 388 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 329
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 269
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 268 agagacaacatcccacagcccatcacttgcaaggatgagaaactcaagtgtgtcatcgac 209
Query: 476 aacctcctctcggatctccggatccacaaccacatattgctttaagagtttgtcaccaaa 535
| | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 208 agcttcctctcggatctccggatccacaactacatattgctttaagagtctgtcaccaaa 149
Query: 536 agcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc 595
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 148 agctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatcacgaaacc 89
Query: 596 tccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaac 655
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 tccagcctcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaac 29
Query: 656 agcaatagcatttccttccctgcatatg 683
|| ||||||||||||||||||||||||
Sbjct: 28 agggatagcatttccttccctgcatatg 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 657 ccacaacaatacaacactatcttctgacccaaacatc 621
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 564 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 507
>gb|CD228919.1|CD228919 CCC1_10_G08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_G08_A007 5', mRNA sequence
Length = 640
Score = 704 bits (355), Expect = 0.0
Identities = 400/415 (96%)
Strand = Plus / Minus
Query: 660 atagcatttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagaga 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 632 atagcatttccttccctgcatatgatagccctagagtcaccaacatttgcgacaaagaga 573
Query: 720 cgatcaccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtca 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 572 cgatcaccaacaagtacagcagttgatgcagtcgacccacattgattttgactactgtca 513
Query: 780 gattctaagaattcactgtcggtgcttttataagcatcatctatagcgactttagtatca 839
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 512 gattctaagaattcactgtcggtgcttttataagcatcatctataacaaccttagtatca 453
Query: 840 ctgatgaactttggatgactaacaagattgttgaacaggttttctttaacatactctgct 899
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 452 ctcatgaactttggatgactaacaagattgttgaacaagttttctttaacatactctgct 393
Query: 900 accttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaaca 959
|| ||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||
Sbjct: 392 actttagcaccaccatgaccgtcaaaaactccaaaaagaccaattatctgaccgtcaaca 333
Query: 960 caatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgca 1019
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cagtcaattttcgtctcatagaagtcttccatggatgcccttttaccaggggagcttgca 273
Query: 1020 tagccatagctaaatctaccattctggctgaggccgccgccgctgacggaggatc 1074
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagccatagctaaatttaccattctggctgaggccgccgccgctgacggaggatc 218
>gb|CD232987.1|CD232987 SS1_11_A10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_11_A10_A012 3', mRNA sequence
Length = 650
Score = 694 bits (350), Expect = 0.0
Identities = 449/481 (93%), Gaps = 2/481 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 481 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 422
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 421 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 362
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 361 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 302
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 242
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 241 agagacaacatcccacagcccatcacttgcaaggatgagaaactcaagtgtgtcatcgac 182
Query: 476 aacctcctctcggatctccggatccacaaccacatattgctttaagagtttgtcaccaaa 535
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 aacttcctctcggatctccggatccacaactacatattgctttaagagtttgtcaccaaa 122
Query: 536 agcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc 595
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 121 agctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatcacgaaacc 62
Query: 596 tccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaac 655
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccagcctcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaac 2
Query: 656 a 656
|
Sbjct: 1 a 1
Score = 63.9 bits (32), Expect = 3e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 34 cacaacaatacaacactatcttcagacccaaacatc 69
||||||||||||||||||||||| ||||||||||||
Sbjct: 629 cacaacaatacaacactatcttctgacccaaacatc 594
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 537 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 480
>gb|CD463627.1|CD463627 ETH1_45_D01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_45_D01_A002 5', mRNA sequence
Length = 602
Score = 694 bits (350), Expect = 0.0
Identities = 397/413 (96%)
Strand = Plus / Minus
Query: 660 atagcatttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagaga 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 594 atagcatttccttccctgcatatgatagccntagagtcaccaacatttgcgacaaagaga 535
Query: 720 cgatcaccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtca 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 534 cgatcaccaacaagtacagcagttgatgcagtcgacccacattgattttgactactgtca 475
Query: 780 gattctaagaattcactgtcggtgcttttataagcatcatctatagcgactttagtatca 839
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct: 474 gattctaagaattcactgtcgatgcttttataagcatcatctatagcaaccttagtatca 415
Query: 840 ctgatgaactttggatgactaacaagattgttgaacaggttttctttaacatactctgct 899
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 414 ctcatgaactttggatgactaacaagattgttgaacaagttttctttaacatactctgct 355
Query: 900 accttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaaca 959
|| ||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||
Sbjct: 354 actttagcaccaccatgaccgtcaaaaactccaaaaagaccaattatctgaccgtcaaca 295
Query: 960 caatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgca 1019
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cagtcaattttcgtctcatagaagtcttccatggatgcccttttaccaggggagcttgca 235
Query: 1020 tagccatagctaaatctaccattctggctgaggccgccgccgctgacggagga 1072
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 234 tagccatagctaaatttaccattctggctgaggccgccgccgctgacggagga 182
>gb|CD228816.1|CD228816 CCC1_10_G08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_G08_A007 3', mRNA sequence
Length = 660
Score = 668 bits (337), Expect = 0.0
Identities = 442/476 (92%), Gaps = 2/476 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 476 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 417
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 416 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 357
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 356 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 297
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 296 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 237
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||
Sbjct: 236 agagacaacatcccacagcccatcgcttgcaaggatgagaaactcaagtgtgtcatcgac 177
Query: 476 aacctcctctcggatctccggatccacaaccacatattgctttaagagtttgtcaccaaa 535
| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 176 agcttcctctcggatctccggatccacaactacatattgctttaagagtttgtcaccaaa 117
Query: 536 agcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc 595
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 116 agctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatcacgaaacc 57
Query: 596 tccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttg 651
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tccagcctcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttg 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 625 ccacaacaatacaacactatcttctgacccaaacatc 589
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 532 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 475
>gb|CF433280.1|CF433280 NIT1_26_A02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_26_A02_A002 3', mRNA sequence
Length = 688
Score = 664 bits (335), Expect = 0.0
Identities = 440/474 (92%), Gaps = 2/474 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| ||| ||| ||||||||||
Sbjct: 474 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcgtagctcacaccactgc 415
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 414 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 355
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 354 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 295
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 294 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 235
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 234 agagacaacatcccacagcccatcacttgcaaggatgagaaactcaagtgtgtcatcgac 175
Query: 476 aacctcctctcggatctccggatccacaaccacatattgctttaagagtttgtcaccaaa 535
| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 174 agcttcctctcggatctccggatccacaactacatattgctttaagagtttgtcaccaaa 115
Query: 536 agcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc 595
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 114 agctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatcacgaaacc 55
Query: 596 tccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctt 649
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tccagcctcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctt 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 623 ccacaacaatacaacactatcttctgacccaaacatc 587
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 530 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 473
>gb|BM326779.1|BM326779 PIC1_2_F10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 648
Score = 652 bits (329), Expect = 0.0
Identities = 431/464 (92%), Gaps = 2/464 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 464 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 405
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 404 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 345
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 344 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 285
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 284 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 225
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 224 agagacaacatcccacagcccatcacttgcaaggatgagaaactcaagtgtgtcatcgac 165
Query: 476 aacctcctctcggatctccggatccacaaccacatattgctttaagagtttgtcaccaaa 535
| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 164 agcttcctctcggatctccggatccacaactacatattgctttaagagtttgtcaccaaa 105
Query: 536 agcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc 595
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 104 agctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatcacgaaacc 45
Query: 596 tccagcatcttcaatacgctgccgctcatcagtttgatcaggct 639
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 44 tccagcctcttcaatacgctgccgctcatcagtttgatcaggct 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 613 ccacaacaatacaacactatcttctgacccaaacatc 577
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 520 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 463
>gb|CF757975.1|CF757975 DSAF1_25_F12.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_F12_A011 3', mRNA sequence
Length = 643
Score = 624 bits (315), Expect = e-177
Identities = 417/450 (92%), Gaps = 2/450 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 450 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 391
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 390 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 331
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 330 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 271
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 270 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 211
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 210 agagacaacatcccacagcccatcacttgcaaggatgagaaactcaagtgtgtcatcgac 151
Query: 476 aacctcctctcggatctccggatccacaaccacatattgctttaagagtttgtcaccaaa 535
| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 150 agcttcctctcggatctccggatccacaactacatattgctttaagagtttgtcaccaaa 91
Query: 536 agcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc 595
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 90 agctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatcacgaaacc 31
Query: 596 tccagcatcttcaatacgctgccgctcatc 625
|||||| |||||||||||||||||||||||
Sbjct: 30 tccagcctcttcaatacgctgccgctcatc 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 599 ccacaacaatacaacactatcttctgacccaaacatc 563
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 506 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 449
>gb|CD223653.1|CD223653 CCC1_29_B01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_29_B01_A007 3', mRNA sequence
Length = 651
Score = 605 bits (305), Expect = e-171
Identities = 413/448 (92%), Gaps = 2/448 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 448 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 389
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||| | ||||||||||| |||||||
Sbjct: 388 gtacagtaattttattgctatgctttaagcgtatccggtactaccttgcccgcgcaagaa 329
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 328 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 269
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 209
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||
Sbjct: 208 agagacaacatcccacagcccatcgcttgcaaggatgagaaactcaagtgtgtcatcgac 149
Query: 476 aacctcctctcggatctccggatccacaaccacatattgctttaagagtttgtcaccaaa 535
| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 148 agcttcctctcggatctccggatccacaactacatattgctttaagagtttgtcaccaaa 89
Query: 536 agcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacc 595
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 88 agctcgcgaaacagcaagtacaccaccaacacgccatgttcctgcccacatcacgaaacc 29
Query: 596 tccagcatcttcaatacgctgccgctca 623
|||||| |||||||||||||||||||||
Sbjct: 28 tccagcctcttcaatacgctgccgctca 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 597 ccacaacaatacaacactatcttctgacccaaacatc 561
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 504 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 447
>gb|CD463575.1|CD463575 ETH1_45_D01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_45_D01_A002 3', mRNA sequence
Length = 561
Score = 436 bits (220), Expect = e-120
Identities = 313/343 (91%), Gaps = 2/343 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 343 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 284
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 283 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 224
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 223 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaaaag 164
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 163 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 104
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 103 agagacaacatcccacagcccatcacttgcaaggatgagaaactcaagtgtgtcatcgac 44
Query: 476 aacctcctctcggatctccggatccacaaccacatattgcttt 518
| | |||||||||||||||||||||||||| ||||||||||||
Sbjct: 43 agcttcctctcggatctccggatccacaactacatattgcttt 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 492 ccacaacaatacaacactatcttctgacccaaacatc 456
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 399 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 342
>gb|CD208619.1|CD208619 HS1_39_A04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_39_A04_A012 3', mRNA sequence
Length = 622
Score = 392 bits (198), Expect = e-107
Identities = 282/309 (91%), Gaps = 2/309 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 394 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 335
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 334 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 275
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 274 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 215
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttcctcgtt 415
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 214 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttcctcgtt 155
Query: 416 agagaccacatcccacagcccatcacttgcaaggataagaaactcgagtgtgtcatcaac 475
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 154 agagacaacatcccacagcccatcacttgcaaggatgagaaactcaagtgtgtcatcgac 95
Query: 476 aacctcctc 484
||| |||||
Sbjct: 94 aacttcctc 86
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 543 ccacaacaatacaacactatcttctgacccaaacatc 507
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 450 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 393
>gb|BI246108.1|BI246108 IP1_68_H09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 408
Score = 351 bits (177), Expect = 8e-095
Identities = 207/217 (95%)
Strand = Plus / Minus
Query: 856 gactaacaagattgttgaacaggttttctttaacatactctgctaccttagcaccaccat 915
||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct: 408 gactaacaagattgttgaacaagttctctttaacatactctgctactttagcaccaccat 349
Query: 916 gaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatttttgtct 975
|||| |||||||||||||||||||||| |||||| || |||||||| |||||||| ||||
Sbjct: 348 gaccgtcaaaaactccaaaaagaccaattatctgaccgtcaacacagtcaattttcgtct 289
Query: 976 catagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatc 1035
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 catagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagctaaatt 229
Query: 1036 taccattctggctgaggccgccgccgctgacggagga 1072
|||||||||||||||||||||||||||||||||||||
Sbjct: 228 taccattctggctgaggccgccgccgctgacggagga 192
>gb|CD234900.1|CD234900 SS1_18_D09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_18_D09_A012 5', mRNA sequence
Length = 367
Score = 287 bits (145), Expect = 1e-075
Identities = 169/177 (95%)
Strand = Plus / Minus
Query: 896 tgctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatc 955
|||||| ||||||||||||||||| |||||||||||||||||||||| |||||| || ||
Sbjct: 367 tgctactttagcaccaccatgaccgtcaaaaactccaaaaagaccaattatctgaccgtc 308
Query: 956 aacacaatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagct 1015
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aacacagtcaattttcgtctcatagaagtcttccatggatgcccttttaccaggggagct 248
Query: 1016 tgcatagccatagctaaatctaccattctggctgaggccgccgccgctgacggagga 1072
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgcatagccatagctaaatttaccattctggctgaggccgccgccgctgacggagga 191
>gb|BI245689.1|BI245689 IP1_68_H09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 437
Score = 283 bits (143), Expect = 2e-074
Identities = 212/234 (90%), Gaps = 2/234 (0%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 234 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 175
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 174 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 115
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctccctcttgtacgcctcttgcaagag 355
| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 114 gcgcacaacgacacaagttatgttgtcactgctctccctcttgtaggcctcttgcaagag 55
Query: 356 catctttgcagcctcttctgggtcctgaatggatctagtcatcgcgacagcttc 409
| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 54 cttctttgcagcctcttctgggtcctgaatggatctggtcatcgcgacagcttc 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 383 ccacaacaatacaacactatcttctgacccaaacatc 347
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 290 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 233
>gb|CD208712.1|CD208712 HS1_39_A04.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_39_A04_A012 5', mRNA sequence
Length = 608
Score = 260 bits (131), Expect = 2e-067
Identities = 156/163 (95%), Gaps = 1/163 (0%)
Strand = Plus / Minus
Query: 495 ggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagt 554
||||||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 608 ggatccacaactacatatt-ctttaagagtttgtcaccaaaagcccgcgaagcagcaagt 550
Query: 555 acaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgc 614
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 549 acaccaccaacacgccatgttcctgcccacatcacgaaacctccagcctcttcaatacgc 490
Query: 615 tgccgctcatcagtttgatcaggcttgtgatcctttgaaacag 657
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgccgctcatcagtttgatcaggcttgtgatcctttgaaacag 447
>gb|CF771047.1|CF771047 DSBF1_13_C01.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_13_C01_A010 3', mRNA sequence
Length = 368
Score = 155 bits (78), Expect = 1e-035
Identities = 138/157 (87%), Gaps = 2/157 (1%)
Strand = Plus / Minus
Query: 178 tttctccatttaacatcgggaaatcaatcgacgcatgtacatcagagc--acaccactgc 235
|||||||||| ||| | || ||||||||||| ||||||| |||| ||| ||||||||||
Sbjct: 157 tttctccattcaaccttggaaaatcaatcgaggcatgtatatcatagctcacaccactgc 98
Query: 236 gtaaaataattttactgctacgctttaagcgtatccgctgctaccttgcccatgcaagaa 295
||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 97 gtacagtaattttattgctatgctttaagcgtatccgctactaccttgcccgcgcaagaa 38
Query: 296 gtgcacgacgacgcaagttatgttgtcactgctctcc 332
| |||| ||||| ||||||||||||||||||||||||
Sbjct: 37 gcgcacaacgacacaagttatgttgtcactgctctcc 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 33 ccacaacaatacaacactatcttcagacccaaacatc 69
|||||||||||||||||||||||| ||||||||||||
Sbjct: 306 ccacaacaatacaacactatcttctgacccaaacatc 270
Score = 63.9 bits (32), Expect = 3e-008
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 112 tatagggtacacgcatttcccagttcaaccca---tcataatacatgtttcctacctt 166
|||||||||||| ||||||||||||||||||| |||||||||| || |||||||||
Sbjct: 213 tatagggtacacacatttcccagttcaacccatcgtcataatacaagtatcctacctt 156
>gb|CF770339.1|CF770339 DSBF1_7_D12.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_7_D12_A010 5', mRNA sequence
Length = 510
Score = 95.6 bits (48), Expect = 8e-018
Identities = 153/188 (81%)
Strand = Plus / Minus
Query: 405 gcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcgagt 464
||||||||||| | ||||| ||||| || ||||| ||||||||||| || ||||||||
Sbjct: 190 gcttcctcgttggtcaccacgtcccagaggccatcgcttgcaaggatgaggaactcgagg 131
Query: 465 gtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaagagt 524
| | || || |||||||| |||||| ||||| |||||||||| ||||| |||||
Sbjct: 130 gagctgtccaccacctcctccttgatctctggatcagcaaccacatactgcttcaagagc 71
Query: 525 ttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccac 584
||||| ||||| || || ||||||||||| || ||||| || ||||| ||||| ||||||
Sbjct: 70 ttgtccccaaatgctcgagaaacagcaaggacgccaccgacacgccacgttccagcccac 11
Query: 585 atcacaaa 592
||||||||
Sbjct: 10 atcacaaa 3
>gb|CF770421.1|CF770421 DSBF1_7_D12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_7_D12_A010 3', mRNA sequence
Length = 491
Score = 95.6 bits (48), Expect = 8e-018
Identities = 153/188 (81%)
Strand = Plus / Minus
Query: 405 gcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcgagt 464
||||||||||| | ||||| ||||| || ||||| ||||||||||| || ||||||||
Sbjct: 190 gcttcctcgttggtcaccacgtcccagaggccatcgcttgcaaggatgaggaactcgagg 131
Query: 465 gtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaagagt 524
| | || || |||||||| |||||| ||||| |||||||||| ||||| |||||
Sbjct: 130 gagctgtccaccacctcctccttgatctctggatcagcaaccacatactgcttcaagagc 71
Query: 525 ttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccac 584
||||| ||||| || || ||||||||||| || ||||| || ||||| ||||| ||||||
Sbjct: 70 ttgtccccaaatgctcgagaaacagcaaggacgccaccgacacgccacgttccagcccac 11
Query: 585 atcacaaa 592
||||||||
Sbjct: 10 atcacaaa 3
>gb|BG933257.1|BG933257 WS1_92_B11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 681
Score = 87.7 bits (44), Expect = 2e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| |||||||||| ||||| ||||| ||||| ||||| || || |||||
Sbjct: 130 gatctctggatcagcaaccacatactgcttcaagagcttgtccccaaatgctcgagaaac 71
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttc 607
|||||| || ||||| || ||||| ||||| |||||||||||||| ||||| || |||||
Sbjct: 70 agcaaggacgccaccgacacgccacgttccagcccacatcacaaaccctcctgcttcttc 11
Score = 46.1 bits (23), Expect = 0.007
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 405 gcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcgag 463
||||||||||| | ||||| ||||| || ||||| ||||||||||| || ||||||||
Sbjct: 296 gcttcctcgttggtcaccacgtcccagaggccatcgcttgcaaggatgaggaactcgag 238
>gb|CN141540.1|CN141540 OX1_52_G03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_52_G03_A002 3', mRNA sequence
Length = 826
Score = 87.7 bits (44), Expect = 2e-015
Identities = 206/260 (79%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
||||||||||| |||| ||| ||||||||||| |||||||| |||||||| || || |||
Sbjct: 316 acagcttcctcattagtgacaacatcccacagtccatcactagcaaggatgaggaattcg 257
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | || || |||||||| ||| || || || | || ||||| ||||| |||
Sbjct: 256 agggagctgtcgaccacctcctccttgatttcagggtcagcgacaacatactgcttcaag 197
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
||||| |||||||| || || || ||||| || |||||||| || |||||||| || |||
Sbjct: 196 agtttatcaccaaatgctcgagagacagcgagaacaccacccactcgccatgtcccagcc 137
Query: 582 cacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggcttg 641
||||| ||||| || || ||||| ||||| | || | |||||| || |||||||| |||
Sbjct: 136 cacataacaaagccccctgcatcctcaattctttgtctctcatctgtctgatcaggtttg 77
Query: 642 tgatcctttgaaacagcaat 661
||||| ||||||| |||||
Sbjct: 76 tgatctcttgaaaccgcaat 57
>gb|CD222489.1|CD222489 CCC1_22_E05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_22_E05_A007 3', mRNA sequence
Length = 657
Score = 73.8 bits (37), Expect = 3e-011
Identities = 166/209 (79%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
||||||||||| |||| ||| ||||||||||| |||||||| |||||||| || || |||
Sbjct: 231 acagcttcctcattagtgacaacatcccacagtccatcactagcaaggatgaggaattcg 172
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|| | | || || |||||||| ||| || || || | || ||||| ||||| |||
Sbjct: 171 agggagctgtcgaccacctcctccttgatttcagggtcagcgacaacatactgcttcaag 112
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
||||| |||||||| || || || ||||| || |||||||| || |||||||| || |||
Sbjct: 111 agtttatcaccaaatgctcgagagacagcgagaacaccacccactcgccatgtcccagcc 52
Query: 582 cacatcacaaaacctccagcatcttcaat 610
||||| ||||| || || ||||| |||||
Sbjct: 51 cacataacaaagccccctgcatcctcaat 23
>gb|BE592931.1|BE592931 WS1_92_B11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 67.9 bits (34), Expect = 2e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||||||||| ||||| || || || || |||||| ||| |||||||||| |||| |
Sbjct: 527 ccaccatgaccgtcaaagacgccgaacagtccaactgtctctccatcaacaccgtcaact 468
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatag 1028
|||| |||| |||||| |||||||| | ||||| ||||| ||||||||||| ||||||
Sbjct: 467 cttgtttcatggaagtcctccatggaggatcttttcccaggagagcttgcatacccatag 408
Query: 1029 ct 1030
||
Sbjct: 407 ct 406
>gb|AW284395.1|AW284395 LG1_289_B01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 507
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggat 451
||||||||||| |||| ||| ||||||||||| |||||||| ||||||||
Sbjct: 51 acagcttcctcattagtgacaacatcccacagtccatcactagcaaggat 2
>gb|BE361887.1|BE361887 DG1_82_H10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggat 451
||||||||||| |||| ||| ||||||||||| |||||||| ||||||||
Sbjct: 124 acagcttcctcattagtgacaacatcccacagtccatcactagcaaggat 75
>gb|BE592865.1|BE592865 WS1_91_D06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 505
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggat 451
||||||||||| |||| ||| ||||||||||| |||||||| ||||||||
Sbjct: 99 acagcttcctcattagtgacaacatcccacagtccatcactagcaaggat 50
>gb|BF655787.1|BF655787 FM1_41_C03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 569
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggat 451
||||||||||| |||| ||| ||||||||||| |||||||| ||||||||
Sbjct: 66 acagcttcctcattagtgacaacatcccacagtccatcactagcaaggat 17
>gb|BG559198.1|BG559198 RHIZ2_55_G11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 568
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggat 451
||||||||||| |||| ||| ||||||||||| |||||||| ||||||||
Sbjct: 55 acagcttcctcattagtgacaacatcccacagtccatcactagcaaggat 6
>gb|BG933195.1|BG933195 WS1_91_D06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 536
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggat 451
||||||||||| |||| ||| ||||||||||| |||||||| ||||||||
Sbjct: 52 acagcttcctcattagtgacaacatcccacagtccatcactagcaaggat 3
>gb|CW283523.1|CW283523 104_760_11409292_116_35484_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409292, DNA
sequence
Length = 730
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 951 ccatcaacacaatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggg 1010
|||||||||| |||| | |||| |||| |||||| |||||||| | ||||| |||||
Sbjct: 560 ccatcaacaccgtcaactcttgtttcatggaagtcctccatggaggatcttttcccagga 619
Query: 1011 gagcttgcatagccatagct 1030
||||||||||| ||||||||
Sbjct: 620 gagcttgcatacccatagct 639
>gb|CW283524.1|CW283524 104_760_11409292_148_35488_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409292, DNA
sequence
Length = 618
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 951 ccatcaacacaatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggg 1010
|||||||||| |||| | |||| |||| |||||| |||||||| | ||||| |||||
Sbjct: 304 ccatcaacaccgtcaactcttgtttcatggaagtcctccatggaggatcttttcccagga 245
Query: 1011 gagcttgcatagccatagct 1030
||||||||||| ||||||||
Sbjct: 244 gagcttgcatacccatagct 225
>gb|CW284825.1|CW284825 104_761_11410003_116_35489_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410003, DNA
sequence
Length = 683
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 951 ccatcaacacaatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggg 1010
|||||||||| |||| | |||| |||| |||||| |||||||| | ||||| |||||
Sbjct: 417 ccatcaacaccgtcaactcttgtttcatggaagtcctccatggaggatcttttcccagga 358
Query: 1011 gagcttgcatagccatagct 1030
||||||||||| ||||||||
Sbjct: 357 gagcttgcatacccatagct 338
>gb|CW284826.1|CW284826 104_761_11410003_148_35493_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410003, DNA
sequence
Length = 671
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 951 ccatcaacacaatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggg 1010
|||||||||| |||| | |||| |||| |||||| |||||||| | ||||| |||||
Sbjct: 546 ccatcaacaccgtcaactcttgtttcatggaagtcctccatggaggatcttttcccagga 605
Query: 1011 gagcttgcatagccatagct 1030
||||||||||| ||||||||
Sbjct: 606 gagcttgcatacccatagct 625
>gb|CN132118.1|CN132118 OX1_4_E06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_4_E06_A002 3', mRNA sequence
Length = 546
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaag 448
||||||||||| |||| ||| ||||||||||| |||||||| |||||
Sbjct: 47 acagcttcctcattagtgacaacatcccacagtccatcactagcaag 1
>gb|CW065796.1|CW065796 104_312_10523341_115_30130 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523341, DNA
sequence
Length = 602
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1047 ctgaggccgccgccgctgacggagga 1072
||||||||||||||||||||||||||
Sbjct: 320 ctgaggccgccgccgctgacggagga 345
>gb|CW229688.1|CW229688 104_671_11207443_116_37267_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207443, DNA
sequence
Length = 669
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1047 ctgaggccgccgccgctgacggagga 1072
||||||||||||||||||||||||||
Sbjct: 500 ctgaggccgccgccgctgacggagga 525
>gb|BZ340837.1|BZ340837 ic41d03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic41d03 5', DNA sequence
Length = 654
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 975 tcatagaagtcttccatggatgcccttttacc 1006
||||||||||||||||||| ||||||| ||||
Sbjct: 83 tcatagaagtcttccatggttgcccttctacc 114
>gb|CW353684.1|CW353684 fsbb001f016i16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016i16, DNA
sequence
Length = 692
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 975 tcatagaagtcttccatggatgcccttttacc 1006
||||||||||||||||||| ||||||| ||||
Sbjct: 619 tcatagaagtcttccatggttgcccttctacc 588
>gb|CW353685.1|CW353685 fsbb001f016i16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016i16, DNA
sequence
Length = 742
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 975 tcatagaagtcttccatggatgcccttttacc 1006
||||||||||||||||||| ||||||| ||||
Sbjct: 451 tcatagaagtcttccatggttgcccttctacc 482
>gb|AW679802.1|AW679802 WS1_32_A01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 554
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcac 441
||||||||||| |||| ||| ||||||||||| |||||||
Sbjct: 40 acagcttcctcattagtgacaacatcccacagtccatcac 1
>gb|CL186339.1|CL186339 104_401_10900143_116_32410_062 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900143, DNA
sequence
Length = 659
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 409 cctcgttagagaccacatcccacagcccatcacttgcaaggat 451
|||| |||| ||| ||||||||||| |||||||| ||||||||
Sbjct: 133 cctcattagtgacaacatcccacagtccatcactagcaaggat 175
>gb|CW245268.1|CW245268 104_706_11220950_116_35081_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220950, DNA
sequence
Length = 673
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 420 accacatcccacagcccatcact 442
|||||||||||||||||||||||
Sbjct: 579 accacatcccacagcccatcact 601
>gb|CW245269.1|CW245269 104_706_11220950_116_37600_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220950, DNA
sequence
Length = 664
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 420 accacatcccacagcccatcact 442
|||||||||||||||||||||||
Sbjct: 579 accacatcccacagcccatcact 601
>gb|CW245270.1|CW245270 104_706_11220950_148_35077_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220950, DNA
sequence
Length = 727
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 420 accacatcccacagcccatcact 442
|||||||||||||||||||||||
Sbjct: 237 accacatcccacagcccatcact 215
>gb|CW245271.1|CW245271 104_706_11220950_148_37599_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220950, DNA
sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 420 accacatcccacagcccatcact 442
|||||||||||||||||||||||
Sbjct: 237 accacatcccacagcccatcact 215
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 344,012
Number of Sequences: 832831
Number of extensions: 344012
Number of successful extensions: 87019
Number of sequences better than 0.5: 71
Number of HSP's better than 0.5 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86865
Number of HSP's gapped (non-prelim): 131
length of query: 1074
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1054
effective length of database: 474,703,049
effective search space: 500337013646
effective search space used: 500337013646
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)