BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.1
(1175 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD221371.1|CD221371 CCC1_54_D12.b1_A007 Callus culture/c... 597 e-169
gb|BG103652.1|BG103652 RHIZ2_39_B10.g1_A003 Rhizome2 (RHIZ2... 559 e-157
gb|BG103741.1|BG103741 RHIZ2_40_C05.g1_A003 Rhizome2 (RHIZ2... 559 e-157
gb|BE358706.1|BE358706 DG1_31_E02.g1_A002 Dark Grown 1 (DG1... 539 e-151
gb|CX620647.1|CX620647 GABR1_53_D06.b1_A002 GA- or brassino... 496 e-138
gb|CW474205.1|CW474205 fsbb001f229o23f0 Sorghum methylation... 460 e-127
gb|BG557663.1|BG557663 EM1_54_H11.g1_A002 Embryo 1 (EM1) So... 446 e-123
gb|CN144800.1|CN144800 WOUND1_25_B06.b2_A002 Wounded leaves... 406 e-111
gb|CW474206.1|CW474206 fsbb001f229o23k0 Sorghum methylation... 361 1e-097
gb|CD232676.1|CD232676 SS1_1_D02.b1_A012 Salt-stressed seed... 361 1e-097
gb|BG241631.1|BG241631 RHIZ2_17_H11.g1_A003 Rhizome2 (RHIZ2... 327 1e-087
gb|BG052258.1|BG052258 RHIZ2_12_C05.g1_A003 Rhizome2 (RHIZ2... 301 8e-080
gb|BG050432.1|BG050432 FM1_69_B03.g1_A003 Floral-Induced Me... 289 3e-076
gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) So... 260 3e-067
gb|BG052652.1|BG052652 RHIZ2_27_F11.g1_A003 Rhizome2 (RHIZ2... 236 4e-060
gb|AW284914.1|AW284914 LG1_295_G10.g1_A002 Light Grown 1 (L... 232 6e-059
gb|BG053523.1|BG053523 RHIZ2_10_C05.g1_A003 Rhizome2 (RHIZ2... 228 9e-058
gb|CW463888.1|CW463888 fsbb001f212n03f0 Sorghum methylation... 159 7e-037
gb|CF489143.1|CF489143 POL1_55_A05.b1_A002 Pollen Sorghum b... 133 4e-029
gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum b... 103 4e-020
gb|BZ344529.1|BZ344529 hp66h10.b1 WGS-SbicolorF (JM107 adap... 90 5e-016
gb|BZ350855.1|BZ350855 ht61e11.g1 WGS-SbicolorF (JM107 adap... 90 5e-016
gb|CW349438.1|CW349438 fsbb001f010e09k0 Sorghum methylation... 90 5e-016
gb|CW410329.1|CW410329 fsbb001f105a14f0 Sorghum methylation... 90 5e-016
gb|CW493812.1|CW493812 fsbb001f284m09k0 Sorghum methylation... 90 5e-016
gb|CW346505.1|CW346505 fsbb001f006a22k0 Sorghum methylation... 78 2e-012
gb|CF759649.1|CF759649 DSAF1_48_A01.b1_A011 Drought-stresse... 78 2e-012
gb|AW285500.2|AW285500 LG1_241_D03.g1_A002 Light Grown 1 (L... 76 8e-012
gb|BG560333.1|BG560333 RHIZ2_73_B06.b1_A003 Rhizome2 (RHIZ2... 74 3e-011
gb|CD432207.1|CD432207 ETH1_26_G11.g1_A002 Ethylene-treated... 74 3e-011
gb|CN147262.1|CN147262 WOUND1_48_D07.g1_A002 Wounded leaves... 74 3e-011
gb|BG560363.1|BG560363 RHIZ2_73_E06.b1_A003 Rhizome2 (RHIZ2... 72 1e-010
gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infecte... 58 2e-006
gb|CD208815.1|CD208815 HS1_44_A11.b1_A012 Heat-shocked seed... 56 8e-006
gb|CF485354.1|CF485354 POL1_31_B06.b1_A002 Pollen Sorghum b... 56 8e-006
gb|CW491537.1|CW491537 fsbb001f281h03k0 Sorghum methylation... 52 1e-004
gb|BG933185.1|BG933185 WS1_91_C08.g1_A002 Water-stressed 1 ... 52 1e-004
gb|BG412608.1|BG412608 OV2_36_E11.g1_A002 Ovary 2 (OV2) Sor... 50 5e-004
gb|CB928908.1|CB928908 ABA1_38_A08.b1_A012 Abscisic acid-tr... 50 5e-004
gb|CD203981.1|CD203981 HS1_3_B06.b1_A012 Heat-shocked seedl... 50 5e-004
gb|CD207954.1|CD207954 HS1_36_D12.b1_A012 Heat-shocked seed... 50 5e-004
gb|CD432110.1|CD432110 ETH1_26_G11.b1_A002 Ethylene-treated... 50 5e-004
gb|CN147179.1|CN147179 WOUND1_48_D07.b1_A002 Wounded leaves... 50 5e-004
gb|CN149638.1|CN149638 WOUND1_64_B06.b1_A002 Wounded leaves... 50 5e-004
gb|CX615956.1|CX615956 GABR1_25_A05.b1_A002 GA- or brassino... 50 5e-004
gb|AW680990.1|AW680990 WS1_9_G07.b1_A002 Water-stressed 1 (... 48 0.002
gb|AW681149.1|AW681149 WS1_9_G07.g1_A002 Water-stressed 1 (... 48 0.002
gb|AW747778.1|AW747778 WS1_76_G10.g1_A002 Water-stressed 1 ... 48 0.002
gb|AW925213.1|AW925213 WS1_76_G10.b1_A002 Water-stressed 1 ... 48 0.002
gb|BE595856.1|BE595856 PI1_49_B01.g1_A002 Pathogen induced ... 48 0.002
gb|BE596303.1|BE596303 PI1_49_B01.b1_A002 Pathogen induced ... 48 0.002
gb|BE601384.1|BE601384 PI1_92_C10.g1_A002 Pathogen induced ... 48 0.002
gb|BG559745.1|BG559745 RHIZ2_73_B06.g1_A003 Rhizome2 (RHIZ2... 48 0.002
gb|BG559776.1|BG559776 RHIZ2_73_E06.g1_A003 Rhizome2 (RHIZ2... 48 0.002
gb|BM329727.1|BM329727 PIC1_42_D10.g1_A002 Pathogen-infecte... 48 0.002
gb|CD204028.1|CD204028 HS1_3_G02.b1_A012 Heat-shocked seedl... 48 0.002
gb|CD204161.1|CD204161 HS1_4_G11.b1_A012 Heat-shocked seedl... 48 0.002
gb|CD207497.1|CD207497 HS1_33_C08.b1_A012 Heat-shocked seed... 48 0.002
gb|CD207555.1|CD207555 HS1_33_D05.b1_A012 Heat-shocked seed... 48 0.002
gb|CD207647.1|CD207647 HS1_34_G09.b1_A012 Heat-shocked seed... 48 0.002
gb|CD207816.1|CD207816 HS1_35_H08.b1_A012 Heat-shocked seed... 48 0.002
gb|CD209959.1|CD209959 HS1_56_C07.b1_A012 Heat-shocked seed... 48 0.002
gb|CD212197.1|CD212197 HS1_71_G10.b1_A012 Heat-shocked seed... 48 0.002
gb|CD220465.1|CD220465 CCC1_67_A10.b1_A007 Callus culture/c... 48 0.002
gb|CD224789.1|CD224789 CCC1_36_H11.b1_A007 Callus culture/c... 48 0.002
gb|CD231108.1|CD231108 SS1_8_B03.b1_A012 Salt-stressed seed... 48 0.002
gb|CD233292.1|CD233292 SS1_13_A05.b1_A012 Salt-stressed see... 48 0.002
gb|CF427003.1|CF427003 PH1_3_F11.b1_A002 Phosphorous-defici... 48 0.002
gb|CF757382.1|CF757382 DSAF1_17_C03.g1_A011 Drought-stresse... 48 0.002
gb|CF760577.1|CF760577 DSAF1_63_A10.b1_A011 Drought-stresse... 48 0.002
gb|CF771531.1|CF771531 DSBF1_20_F08.g1_A010 Drought-stresse... 48 0.002
gb|CF772017.1|CF772017 DSBF1_27_H03.g9_A010 Drought-stresse... 48 0.002
gb|CN149951.1|CN149951 WOUND1_66_A06.b1_A002 Wounded leaves... 48 0.002
gb|CN151674.1|CN151674 WOUND1_76_H02.g1_A002 Wounded leaves... 48 0.002
gb|CX620511.1|CX620511 GABR1_52_G02.b1_A002 GA- or brassino... 48 0.002
gb|CX620652.1|CX620652 GABR1_53_D12.b1_A002 GA- or brassino... 48 0.002
gb|BZ627281.1|BZ627281 ih51e02.g1 WGS-SbicolorF (DH5a methy... 46 0.007
gb|CW466008.1|CW466008 fsbb001f217a21f0 Sorghum methylation... 44 0.029
gb|CW410330.1|CW410330 fsbb001f105a14k0 Sorghum methylation... 42 0.11
gb|CW493811.1|CW493811 fsbb001f284m09f0 Sorghum methylation... 42 0.11
gb|CN151584.1|CN151584 WOUND1_76_H02.b1_A002 Wounded leaves... 42 0.11
gb|CF772247.1|CF772247 DSBF1_31_B12.g1_A010 Drought-stresse... 40 0.45
gb|CN149722.1|CN149722 WOUND1_64_B06.g1_A002 Wounded leaves... 40 0.45
>gb|CD221371.1|CD221371 CCC1_54_D12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_D12_A007 3', mRNA sequence
Length = 665
Score = 597 bits (301), Expect = e-169
Identities = 391/421 (92%)
Strand = Plus / Plus
Query: 392 gatttttggtgaaaggcgcccaggtgatgcagagattctgttttcagagactactaaagc 451
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 gatttttggtgaaagacgccctggtgatgcagagattctcttttcagagactactaaagc 60
Query: 452 agagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgaccaatg 511
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 61 agagagggagcttaactggaaagcaaaatatggtattgaagagatgtgtcgcgaccaatg 120
Query: 512 gaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcagaatgg 571
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct: 121 gaactgggccagcaagaacccttatggctatggatcgcttgactctaccaagcagaatgg 180
Query: 572 tcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaacggttc 631
||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct: 181 ccaccaaacaaatggatctgctgactcctccaagcagaatggccaccacacaaatggttc 240
Query: 632 aactgactcacccaagcggaacggccaccatgcgtatgggtctgctgactcacccaagcg 691
||||||||||||||||||||| | |||| |||| |||||||| || ||||||||||||||
Sbjct: 241 aactgactcacccaagcggaatgaccactatgcctatgggtccgccgactcacccaagcg 300
Query: 692 caacgggcactgcgtttttggatcatcagacctcaagccgaatggtaatggccacctgcg 751
|| ||||||| |||| ||||||||||||| |||||| |||||||||||| ||||||||
Sbjct: 301 gaatgggcactatgtttatggatcatcagacttcaagcagaatggtaatggtcacctgcg 360
Query: 752 ctgagcagaactgtttggcctgtgagctccctgtacattcggttgcgatgtgagctccct 811
||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 361 ctgagcagagctgtttgacctgtgagctccctgtacattcggtcgcgatgtgagctccct 420
Query: 812 g 812
|
Sbjct: 421 g 421
Score = 297 bits (150), Expect = 1e-078
Identities = 222/244 (90%), Gaps = 4/244 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 483
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct: 484 agtatagagtcgttggcagcggaattccagtttgctgtgggtaaagcctatcttctgcgt 543
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 544 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 601
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct: 602 gattctattctttccctgctaattgaactgtattacgcttcatcaagtttggctgattac 661
Query: 1063 tgtt 1066
||||
Sbjct: 662 tgtt 665
>gb|BG103652.1|BG103652 RHIZ2_39_B10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 660
Score = 559 bits (282), Expect = e-157
Identities = 363/390 (93%)
Strand = Plus / Plus
Query: 423 gagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatac 482
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagattctcttttcagagactactaaagcagagagggagcttaactggaaagcaaaatat 60
Query: 483 ggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctat 542
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtattgaagagatgtgtcgcgaccaatggaactgggccagcaagaacccttatggctat 120
Query: 543 ggatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgactcctcc 602
||||| |||||||||| |||||||||||| || |||||||| ||||| ||||||||||||
Sbjct: 121 ggatcgcctgactctaccaagcagaatggccatcaaacaaatggatctgctgactcctcc 180
Query: 603 aagcagaatggccaccgcacaaacggttcaactgactcacccaagcggaacggccaccat 662
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||
Sbjct: 181 aagcagaatggccaccacacaaatggttcaactgactcacccaagcggaatggccactat 240
Query: 663 gcgtatgggtctgctgactcacccaagcgcaacgggcactgcgtttttggatcatcagac 722
|| |||||||| || |||||||||||||| || ||||||| |||| |||||||||||||
Sbjct: 241 gcctatgggtccgccgactcacccaagcggaatgggcactatgtttatggatcatcagac 300
Query: 723 ctcaagccgaatggtaatggccacctgcgctgagcagaactgtttggcctgtgagctccc 782
|||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct: 301 ttcaagcagaatggtaatggtcacctgcgctgagcagagctgtttgacctgtgagctccc 360
Query: 783 tgtacattcggttgcgatgtgagctccctg 812
|||||||||||| |||||||||||||||||
Sbjct: 361 tgtacattcggtcgcgatgtgagctccctg 390
Score = 317 bits (160), Expect = 1e-084
Identities = 238/262 (90%), Gaps = 4/262 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcataa 452
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 453 agtatggagtcgttggcagcggaattcctgtttgctgtgggtaaagcctatcttctgcgt 512
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 513 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 570
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct: 571 gattctattctttccctgctaattgaactgtattacgcttcatcaagtttggctgattac 630
Query: 1063 tgtttaacggggaaaagttgca 1084
|||||||||||||||| |||||
Sbjct: 631 tgtttaacggggaaaacttgca 652
>gb|BG103741.1|BG103741 RHIZ2_40_C05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 577
Score = 559 bits (282), Expect = e-157
Identities = 363/390 (93%)
Strand = Plus / Plus
Query: 423 gagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatac 482
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagattctcttttcagagactactaaagcagagagggagcttaactggaaagcaaaatat 60
Query: 483 ggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctat 542
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtattgaagagatgtgtcgcgaccaatggaactgggccagcaagaacccttatggctat 120
Query: 543 ggatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgactcctcc 602
||||| |||||||||| |||||||||||| || |||||||| ||||| ||||||||||||
Sbjct: 121 ggatcgcctgactctaccaagcagaatggccatcaaacaaatggatctgctgactcctcc 180
Query: 603 aagcagaatggccaccgcacaaacggttcaactgactcacccaagcggaacggccaccat 662
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||
Sbjct: 181 aagcagaatggccaccacacaaatggttcaactgactcacccaagcggaatggccactat 240
Query: 663 gcgtatgggtctgctgactcacccaagcgcaacgggcactgcgtttttggatcatcagac 722
|| |||||||| || |||||||||||||| || ||||||| |||| |||||||||||||
Sbjct: 241 gcctatgggtccgccgactcacccaagcggaatgggcactatgtttatggatcatcagac 300
Query: 723 ctcaagccgaatggtaatggccacctgcgctgagcagaactgtttggcctgtgagctccc 782
|||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct: 301 ttcaagcagaatggtaatggtcacctgcgctgagcagagctgtttgacctgtgagctccc 360
Query: 783 tgtacattcggttgcgatgtgagctccctg 812
|||||||||||| |||||||||||||||||
Sbjct: 361 tgtacattcggtcgcgatgtgagctccctg 390
Score = 172 bits (87), Expect = 5e-041
Identities = 102/107 (95%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcataa 452
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagc 931
||||| ||| || |||||| |||||||||||||||||||||||||||
Sbjct: 453 agtatggagtcgttggcagcggaattcctgtttgctgtgggtaaagc 499
>gb|BE358706.1|BE358706 DG1_31_E02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 711
Score = 539 bits (272), Expect = e-151
Identities = 353/380 (92%)
Strand = Plus / Plus
Query: 433 tttcagagactactaaagcagagagggagcttaactggaaagcaaaatacggtattgaag 492
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tttcagagactactaaagcagagagggagcttaactggaaagcaaaatatggtattgaag 60
Query: 493 agatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatcacctg 552
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 61 agatgtgtcgcgaccaatggaactgggccagcaagaacccttatggctatggatcgcttg 120
Query: 553 actctatcaagcagaatggtcaccaaacaaacggatccgctgactcctccaagcagaatg 612
|||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 121 actctaccaagcagaatggccaccaaacaaatggatctgctgactcctccaagcagaatg 180
Query: 613 gccaccgcacaaacggttcaactgactcacccaagcggaacggccaccatgcgtatgggt 672
|||||| |||||| |||||||||||||||||||||||||| | |||| |||| |||||||
Sbjct: 181 gccaccacacaaatggttcaactgactcacccaagcggaatgaccactatgcctatgggt 240
Query: 673 ctgctgactcacccaagcgcaacgggcactgcgtttttggatcatcagacctcaagccga 732
| || |||||||||||||| || ||||||| |||| ||||||||||||| |||||| ||
Sbjct: 241 ccgccgactcacccaagcggaatgggcactatgtttatggatcatcagacttcaagcaga 300
Query: 733 atggtaatggccacctgcgctgagcagaactgtttggcctgtgagctccctgtacattcg 792
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 301 atggtaatggtcacctgcgctgagcagagctgtttgacctgtgagctccctgtacattcg 360
Query: 793 gttgcgatgtgagctccctg 812
|| |||||||||||||||||
Sbjct: 361 gtcgcgatgtgagctccctg 380
Score = 361 bits (182), Expect = 1e-097
Identities = 266/292 (91%), Gaps = 4/292 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 442
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct: 443 agtatagagtcgttggcagcggaattccagtttgctgtgggtaaagcctatcttctgcgt 502
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 503 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 560
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct: 561 gattctattctttccctgctaattgaactgtattacgcttcatcaagtttggctgattac 620
Query: 1063 tgtttaacggggaaaagttgcatctgtgtacgattatttatttgtacctgta 1114
|||||||||||||||| ||||| ||||||| |||||||||||||||| ||||
Sbjct: 621 tgtttaacggggaaaacttgcacctgtgtatgattatttatttgtacatgta 672
>gb|CX620647.1|CX620647 GABR1_53_D06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_53_D06_A002 3', mRNA sequence
Length = 615
Score = 496 bits (250), Expect = e-138
Identities = 331/358 (92%)
Strand = Plus / Plus
Query: 455 gagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaa 514
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1 gagggagcttaactggaaagcaaaatatggtattgaagagatgtgtcgcgaccaatggaa 60
Query: 515 ctgggccagcaagaacccttatggctatggatcacctgactctatcaagcagaatggtca 574
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| ||
Sbjct: 61 ctgggccagcaagaacccttatggctatggatcgcttgactctaccaagcagaatggcca 120
Query: 575 ccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaacggttcaac 634
||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 121 ccaaacaaatggatctgctgactcctccaagcagaatggccaccacacaaatggttcaac 180
Query: 635 tgactcacccaagcggaacggccaccatgcgtatgggtctgctgactcacccaagcgcaa 694
|||||||||||||||||| | |||| |||| |||||||| || |||||||||||||| ||
Sbjct: 181 tgactcacccaagcggaatgaccactatgcctatgggtccgccgactcacccaagcggaa 240
Query: 695 cgggcactgcgtttttggatcatcagacctcaagccgaatggtaatggccacctgcgctg 754
||||||| |||| ||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct: 241 tgggcactatgtttatggatcatcagacttcaagcagaatggtaatggtcacctgcgctg 300
Query: 755 agcagaactgtttggcctgtgagctccctgtacattcggttgcgatgtgagctccctg 812
|||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 agcagagctgtttgacctgtgagctccctgtacattcggtcgcgatgtgagctccctg 358
Score = 321 bits (162), Expect = 8e-086
Identities = 234/256 (91%), Gaps = 4/256 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 420
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct: 421 agtatagagtcgttggcagcggaattccagtttgctgtgggtaaagcctatcttctgcgt 480
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 481 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 538
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct: 539 gattctattctttccctgctaattgaactgtattacgcttcatcaagtttggctgattac 598
Query: 1063 tgtttaacggggaaaa 1078
||||||||||||||||
Sbjct: 599 tgtttaacggggaaaa 614
>gb|CW474205.1|CW474205 fsbb001f229o23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229o23, DNA
sequence
Length = 767
Score = 460 bits (232), Expect = e-127
Identities = 313/340 (92%)
Strand = Plus / Plus
Query: 473 agcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaaccc 532
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 165 agcaaaatatggtattgaagagatgtgtcgcgaccaatggaactgggccagcaagaaccc 224
Query: 533 ttatggctatggatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgc 592
||||||||||||||| | |||||||| |||||||||||| ||||||||||| ||||| ||
Sbjct: 225 ttatggctatggatcgcttgactctaccaagcagaatggccaccaaacaaatggatctgc 284
Query: 593 tgactcctccaagcagaatggccaccgcacaaacggttcaactgactcacccaagcggaa 652
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 285 tgactcctccaagcagaatggccaccacacaaatggttcaactgactcacccaagcggaa 344
Query: 653 cggccaccatgcgtatgggtctgctgactcacccaagcgcaacgggcactgcgtttttgg 712
| |||| |||| |||||||| || |||||||||||||| || ||||||| |||| |||
Sbjct: 345 tgaccactatgcctatgggtccgccgactcacccaagcggaatgggcactatgtttatgg 404
Query: 713 atcatcagacctcaagccgaatggtaatggccacctgcgctgagcagaactgtttggcct 772
|||||||||| |||||| |||||||||||| ||||||||||||||||| ||||||| |||
Sbjct: 405 atcatcagacttcaagcagaatggtaatggtcacctgcgctgagcagagctgtttgacct 464
Query: 773 gtgagctccctgtacattcggttgcgatgtgagctccctg 812
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 465 gtgagctccctgtacattcggtcgcgatgtgagctccctg 504
Score = 305 bits (154), Expect = 5e-081
Identities = 232/256 (90%), Gaps = 4/256 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 566
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct: 567 agtatagagtcgttggcagcggaattccagtttgctgtgggtaaagcctatcttctgcgt 626
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||| ||||||||||||||| ||||| ||||
Sbjct: 627 tgtttatttttc--ccttcttgcaattatggtggaggaatgtggtcatagtgtatcagct 684
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct: 685 gattctattctttccctgctaattgaactgtattacgcttcatcaagtttggctgattac 744
Query: 1063 tgtttaacggggaaaa 1078
|| |||||||||||||
Sbjct: 745 tggttaacggggaaaa 760
Score = 147 bits (74), Expect = 3e-033
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 387 cctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcagagactact 446
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 1 cctctgatttttggtgaaagacgccctggtgatgcagagattctcttttcagagactact 60
Query: 447 aaagcagagagggagcttaactggaa 472
||||||||||||||||||||||||||
Sbjct: 61 aaagcagagagggagcttaactggaa 86
>gb|BG557663.1|BG557663 EM1_54_H11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 446 bits (225), Expect = e-123
Identities = 309/337 (91%)
Strand = Plus / Plus
Query: 471 aaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaac 530
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aaagcaaaatatggtattgaagagatgtgtcgcgaccaatggaactgggccagcaagaac 60
Query: 531 ccttatggctatggatcacctgactctatcaagcagaatggtcaccaaacaaacggatcc 590
||||||||||||||||| | |||||||| |||||||||||| ||||||||||| |||||
Sbjct: 61 ccttatggctatggatcgcttgactctaccaagcagaatggccaccaaacaaatggatct 120
Query: 591 gctgactcctccaagcagaatggccaccgcacaaacggttcaactgactcacccaagcgg 650
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 121 gctgactcctccaagcagaatggccaccacacaaatggttcaactgactcacccaagcgg 180
Query: 651 aacggccaccatgcgtatgggtctgctgactcacccaagcgcaacgggcactgcgttttt 710
|| | |||| |||| |||||||| || |||||||||||||| || ||||||| || | |
Sbjct: 181 aatgaccactatgcctatgggtccgccgactcacccaagcggaatgggcactatgtctat 240
Query: 711 ggatcatcagacctcaagccgaatggtaatggccacctgcgctgagcagaactgtttggc 770
|||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||||| |
Sbjct: 241 ggatcatcagacttcaagcagaatggtaatggtcacctgcgctgagcagagctgtttgac 300
Query: 771 ctgtgagctccctgtacattcggttgcgatgtgagct 807
|||||||||||||||||||||||| ||||||||||||
Sbjct: 301 ctgtgagctccctgtacattcggtcgcgatgtgagct 337
Score = 182 bits (92), Expect = 5e-044
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 405
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcc 932
||||||||| || |||||| |||||||| |||||||||||||||||||
Sbjct: 406 agtatagagtcgttggcagcggaattccagtttgctgtgggtaaagcc 453
>gb|CN144800.1|CN144800 WOUND1_25_B06.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_B06_A002 3', mRNA sequence
Length = 657
Score = 406 bits (205), Expect = e-111
Identities = 313/349 (89%)
Strand = Plus / Plus
Query: 464 taactggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccag 523
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 taactggaaagcaaaatatggtattgaagagatgtgtcgcgaccaatggaactgggccag 60
Query: 524 caagaacccttatggctatggatcacctgactctatcaagcagaatggtcaccaaacaaa 583
|||||||||||||||||||||||| | ||||| || |||||||||||| | |||||||||
Sbjct: 61 caagaacccttatggctatggatcgcttgactttaccaagcagaatggcccccaaacaaa 120
Query: 584 cggatccgctgactcctccaagcagaatggccaccgcacaaacggttcaactgactcacc 643
|||| ||||||||||||||||||||||||| || |||||| |||||||||||||| ||
Sbjct: 121 gggatttgctgactcctccaagcagaatggcccccccacaaatggttcaactgactcccc 180
Query: 644 caagcggaacggccaccatgcgtatgggtctgctgactcacccaagcgcaacgggcactg 703
|||| |||| | |||| |||| |||||||| || |||||||||||| | || |||||||
Sbjct: 181 caaggggaatgaccactatgcctatgggtccgccgactcacccaaggggaatgggcacta 240
Query: 704 cgtttttggatcatcagacctcaagccgaatggtaatggccacctgcgctgagcagaact 763
|||| ||||||||||||| |||||| |||||||||||| | ||||||||||||||| ||
Sbjct: 241 tgtttatggatcatcagacttcaagcagaatggtaatggtcccctgcgctgagcagagct 300
Query: 764 gtttggcctgtgagctccctgtacattcggttgcgatgtgagctccctg 812
||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 301 gtttgacctgtgagctccctgtacattcggtcgggatgtgagctccctg 349
Score = 276 bits (139), Expect = 4e-072
Identities = 250/285 (87%), Gaps = 4/285 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aggtttatcgtgaaccccctatccgagattgatgtggatcattgggttgacaggtcatac 411
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||||||| || |||||| |||||||| |||||||||||||||||||||| || ||| |
Sbjct: 412 agtatagagtcgttggcagcggaattccagtttgctgtgggtaaagcctattttttgcgt 471
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||| ||||||||||||||||| ||||| ||||
Sbjct: 472 tgtttatttttc--ccttcttgcaattatggggtaggaatgtggtcatagtgtatcagct 529
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||| ||| |||||||| |||||||
Sbjct: 530 gattctattctttccctgctaattgaactgtattacgctacatcaagtttgggtgattac 589
Query: 1063 tgtttaacggggaaaagttgcatctgtgtacgattatttatttgt 1107
|||||||||||||||| |||| | | ||| ||||||||||||||
Sbjct: 590 tgtttaacggggaaaacttgccccggggtaggattatttatttgt 634
>gb|CW474206.1|CW474206 fsbb001f229o23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229o23, DNA
sequence
Length = 722
Score = 361 bits (182), Expect = 1e-097
Identities = 266/292 (91%), Gaps = 4/292 (1%)
Strand = Plus / Minus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 448
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct: 447 agtatagagtcgttggcagcggaattccagtttgctgtgggtaaagcctatcttctgcgt 388
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 387 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 330
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct: 329 gattctattctttccctgctaattgaactgtattacgcttcatcaagtttggctgattac 270
Query: 1063 tgtttaacggggaaaagttgcatctgtgtacgattatttatttgtacctgta 1114
|||||||||||||||| ||||| ||||||| |||||||||||||||| ||||
Sbjct: 269 tgtttaacggggaaaacttgcacctgtgtatgattatttatttgtacatgta 218
Score = 272 bits (137), Expect = 7e-071
Identities = 194/213 (91%)
Strand = Plus / Minus
Query: 600 tccaagcagaatggccaccgcacaaacggttcaactgactcacccaagcggaacggccac 659
||||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||
Sbjct: 722 tccaagcagaatggccaccacacaaatggttcaactgactcacccaagcggaatgaccac 663
Query: 660 catgcgtatgggtctgctgactcacccaagcgcaacgggcactgcgtttttggatcatca 719
|||| |||||||| || |||||||||||||| || ||||||| |||| ||||||||||
Sbjct: 662 tatgcctatgggtccgccgactcacccaagcggaatgggcactatgtttatggatcatca 603
Query: 720 gacctcaagccgaatggtaatggccacctgcgctgagcagaactgtttggcctgtgagct 779
||| |||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct: 602 gacttcaagcagaatggtaatggtcacctgcgctgagcagagctgtttgacctgtgagct 543
Query: 780 ccctgtacattcggttgcgatgtgagctccctg 812
||||||||||||||| |||||||||||||||||
Sbjct: 542 ccctgtacattcggtcgcgatgtgagctccctg 510
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1123 ggagaactagcctcgccgcaaatagccctgatgaatt 1159
||||||||||||||||| ||||||||||||||||
Sbjct: 195 ggagaactagcctcgcccgcgatagccctgatgaatt 159
>gb|CD232676.1|CD232676 SS1_1_D02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_1_D02_A012 3', mRNA sequence
Length = 612
Score = 361 bits (182), Expect = 1e-097
Identities = 266/292 (91%), Gaps = 4/292 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 315
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct: 316 agtatagagtcgttggcagcggaattccagtttgctgtgggtaaagcctatcttctgcgt 375
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 376 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 433
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct: 434 gattctattctttccctgctaattgaactgtattacgcttcatcaagtttggctgattac 493
Query: 1063 tgtttaacggggaaaagttgcatctgtgtacgattatttatttgtacctgta 1114
|||||||||||||||| ||||| ||||||| |||||||||||||||| ||||
Sbjct: 494 tgtttaacggggaaaacttgcacctgtgtatgattatttatttgtacatgta 545
Score = 319 bits (161), Expect = 3e-085
Identities = 230/253 (90%)
Strand = Plus / Plus
Query: 560 caagcagaatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccg 619
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 1 caagcagaatggccaccaaacaaatggatctgctgactcctccaagcagaatggccacca 60
Query: 620 cacaaacggttcaactgactcacccaagcggaacggccaccatgcgtatgggtctgctga 679
|||||| |||||||||||||||||||||||||| | |||| |||| |||||||| || ||
Sbjct: 61 cacaaatggttcaactgactcacccaagcggaatgaccactatgcctatgggtccgccga 120
Query: 680 ctcacccaagcgcaacgggcactgcgtttttggatcatcagacctcaagccgaatggtaa 739
||| |||||||| || ||||||| |||| ||||||||||||| |||||| |||||||||
Sbjct: 121 ctctcccaagcggaatgggcactatgtttatggatcatcagacttcaagcagaatggtaa 180
Query: 740 tggccacctgcgctgagcagaactgtttggcctgtgagctccctgtacattcggttgcga 799
||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||
Sbjct: 181 tggtcacctgcgctgagcagagctgtttgacctgtgagctccctgtacattcggtcgcga 240
Query: 800 tgtgagctccctg 812
|||||||||||||
Sbjct: 241 tgtgagctccctg 253
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1123 ggagaactagcctcgccgcaaatagccctgatgaatt 1159
||||||||||||||||| ||||||||||||||||
Sbjct: 567 ggagaactagcctcgcccgcgatagccctgatgaatt 603
>gb|BG241631.1|BG241631 RHIZ2_17_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 520
Score = 327 bits (165), Expect = 1e-087
Identities = 231/253 (91%)
Strand = Plus / Plus
Query: 560 caagcagaatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccg 619
|||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 5 caagcagaatggccatcaaacaaatggatctgctgactcctccaagcagaatggccacca 64
Query: 620 cacaaacggttcaactgactcacccaagcggaacggccaccatgcgtatgggtctgctga 679
|||||| |||||||||||||||||||||||||| |||||| |||| |||||||| || ||
Sbjct: 65 cacaaatggttcaactgactcacccaagcggaatggccactatgcctatgggtccgccga 124
Query: 680 ctcacccaagcgcaacgggcactgcgtttttggatcatcagacctcaagccgaatggtaa 739
|||||||||||| || ||||||| |||| ||||||||||||| |||||| |||||||||
Sbjct: 125 ctcacccaagcggaatgggcactatgtttatggatcatcagacttcaagcagaatggtaa 184
Query: 740 tggccacctgcgctgagcagaactgtttggcctgtgagctccctgtacattcggttgcga 799
||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||
Sbjct: 185 tggtcacctgcgctgagcagagctgtttgacctgtgagctccctgtacattcggtcgcga 244
Query: 800 tgtgagctccctg 812
|||||||||||||
Sbjct: 245 tgtgagctccctg 257
Score = 287 bits (145), Expect = 1e-075
Identities = 237/263 (90%), Gaps = 6/263 (2%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcataa 319
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 agtatggagtcgttggcagcggaattcctgtttgctgtgggtaaagcctatcttctgcgt 379
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 380 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 437
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggctgattac 1062
||| ||| |||||||||||||||| ||| ||||||||||||| |||||| |||||||||
Sbjct: 438 gattctattctttccctgctaattgaactgtattacgcttcatcaagttt-gctgattac 496
Query: 1063 t-gtttaacggggaaaagttgca 1084
| ||||||||||||||| |||||
Sbjct: 497 tggtttaacggggaaaacttgca 519
>gb|BG052258.1|BG052258 RHIZ2_12_C05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 389
Score = 301 bits (152), Expect = 8e-080
Identities = 209/228 (91%)
Strand = Plus / Plus
Query: 585 ggatccgctgactcctccaagcagaatggccaccgcacaaacggttcaactgactcaccc 644
||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 5 ggatctgctgactcctccaagcagaatggccaccacacaaatggttcaactgactcaccc 64
Query: 645 aagcggaacggccaccatgcgtatgggtctgctgactcacccaagcgcaacgggcactgc 704
|||||||| |||||| |||| |||||||| || |||||||||||||| || |||||||
Sbjct: 65 aagcggaatggccactatgcatatgggtccgccgactcacccaagcggaatgggcactat 124
Query: 705 gtttttggatcatcagacctcaagccgaatggtaatggccacctgcgctgagcagaactg 764
|||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||| |||
Sbjct: 125 gtttatggatcatcagacttcaagcagaatggtaatggtcacctgcgctgagcagagctg 184
Query: 765 tttggcctgtgagctccctgtacattcggttgcgatgtgagctccctg 812
|||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 185 tttgacctgtgagctccctgtacattcggtcgcgatgtgagctccctg 232
Score = 194 bits (98), Expect = 1e-047
Identities = 113/118 (95%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcataa 294
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgc 942
||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agtatggagtcgttggcagcggaattcctgtttgctgtgggtaaagcctatcttctgc 352
Score = 44.1 bits (22), Expect = 0.029
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 560 caagcagaatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccac 617
|||||||||||| ||||| ||||| || || ||||||| |||||| ||||||||||
Sbjct: 22 caagcagaatggccaccacacaaatggttcaactgactcacccaagcggaatggccac 79
>gb|BG050432.1|BG050432 FM1_69_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 452
Score = 289 bits (146), Expect = 3e-076
Identities = 200/218 (91%)
Strand = Plus / Plus
Query: 595 actcctccaagcagaatggccaccgcacaaacggttcaactgactcacccaagcggaacg 654
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
Sbjct: 1 actcctccaagcagaatggccaccacacaaatggttcaactgactcacccaagcggaatg 60
Query: 655 gccaccatgcgtatgggtctgctgactcacccaagcgcaacgggcactgcgtttttggat 714
||||| |||| |||||||| || |||||||||||||| || ||||||| |||| |||||
Sbjct: 61 gccactatgcctatgggtccgccgactcacccaagcggaatgggcactatgtttatggat 120
Query: 715 catcagacctcaagccgaatggtaatggccacctgcgctgagcagaactgtttggcctgt 774
|||||||| |||||| |||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 121 catcagacttcaagcagaatggtaatggtcacctgcgctgagcagagctgtttgacctgt 180
Query: 775 gagctccctgtacattcggttgcgatgtgagctccctg 812
|||||||||||||||||||| |||||||||||||||||
Sbjct: 181 gagctccctgtacattcggtcgcgatgtgagctccctg 218
Score = 254 bits (128), Expect = 2e-065
Identities = 209/234 (89%), Gaps = 4/234 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcataa 280
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 281 agtatggagtcgttggcagcggaattcctgtttgctgtgggtaaagcctatcttctgcgt 340
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 341 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 398
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttcattaagtttggct 1056
||| ||| |||||||||||||||| ||| |||| ||||||| ||||||||||
Sbjct: 399 gattctattctttccctgctaattgaactgtattgtgcttcatcaagtttggct 452
Score = 44.1 bits (22), Expect = 0.029
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 560 caagcagaatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccac 617
|||||||||||| ||||| ||||| || || ||||||| |||||| ||||||||||
Sbjct: 8 caagcagaatggccaccacacaaatggttcaactgactcacccaagcggaatggccac 65
>gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 260 bits (131), Expect = 3e-067
Identities = 140/143 (97%)
Strand = Plus / Plus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 atatttgccgtgatatctaccgttcagatcctgaatggaagagcattttacttaggtact 383
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 tcaatccagttggtgctcatcctagtggatatcttggtgaggacccacgaggaattccca 443
Query: 121 acaatcttatgccctatgttcag 143
|||||||||||||||||||||||
Sbjct: 444 acaatcttatgccctatgttcag 466
>gb|BG052652.1|BG052652 RHIZ2_27_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 369
Score = 236 bits (119), Expect = 4e-060
Identities = 167/183 (91%)
Strand = Plus / Plus
Query: 630 tcaactgactcacccaagcggaacggccaccatgcgtatgggtctgctgactcacccaag 689
||||||||||||||||||||||| |||||| |||| |||||||| || ||||||||||||
Sbjct: 1 tcaactgactcacccaagcggaatggccactatgcctatgggtccgccgactcacccaag 60
Query: 690 cgcaacgggcactgcgtttttggatcatcagacctcaagccgaatggtaatggccacctg 749
|| || ||||||| |||| ||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 61 cggaatgggcactatgtttatggatcatcagacttcaagcagaatggtaatggtcacctg 120
Query: 750 cgctgagcagaactgtttggcctgtgagctccctgtacattcggttgcgatgtgagctcc 809
||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 cgctgagcagagctgtttgacctgtgagctccctgtacattcggtcgcgatgtgagctcc 180
Query: 810 ctg 812
|||
Sbjct: 181 ctg 183
Score = 208 bits (105), Expect = 9e-052
Identities = 165/184 (89%), Gaps = 2/184 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 186 aggtctatcgtgaacccactatccgagattaatgtggatcattgggttgacaggtcataa 245
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||| ||| || |||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct: 246 agtatggagtcgttggcagcggaattcctgtttgctgtgggtaaagcctatcttatgcgt 305
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 306 tgtttatttttc--ccttcttgcaattatggtgtaggaatgtggtcatagtgtatcagct 363
Query: 1005 gatt 1008
||||
Sbjct: 364 gatt 367
>gb|AW284914.1|AW284914 LG1_295_G10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 406
Score = 232 bits (117), Expect = 6e-059
Identities = 195/219 (89%), Gaps = 4/219 (1%)
Strand = Plus / Plus
Query: 898 tggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctttcgtgttttttct 957
|||||| |||||||| ||||||||||||||||||||||||||||| || | ||||||
Sbjct: 6 tggcagcggaattccagtttgctgtgggtaaagcctatcttctgcgttgtttatttttcc 65
Query: 958 tgcttctttcgattatggtgtaggaatgtggtcataatgtattagctgatt--atccttt 1015
|||||| | ||||||||||||||||||||||||| ||||| |||||||| || ||||
Sbjct: 66 --cttcttgcaattatggtgtaggaatgtggtcatagtgtatcagctgattctattcttt 123
Query: 1016 ccctgctaattggactttattacgcttcattaagtttggctgattactgtttaacgggga 1075
|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 124 ccctgctaattgaactgtattacgcttcatcaagtttggctgattactgtttaacgggga 183
Query: 1076 aaagttgcatctgtgtacgattatttatttgtacctgta 1114
||| ||||| ||||||| |||||||||||||||| ||||
Sbjct: 184 aaacttgcacctgtgtatgattatttatttgtacatgta 222
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1123 ggagaactagcctcgccgcaaatagccctgatgaatt 1159
||||||||||||||||| ||||||||||||||||
Sbjct: 245 ggagaactagcctcgcccgcgatagccctgatgaatt 281
>gb|BG053523.1|BG053523 RHIZ2_10_C05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 278
Score = 228 bits (115), Expect = 9e-058
Identities = 196/221 (88%), Gaps = 4/221 (1%)
Strand = Plus / Plus
Query: 825 aggtctatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcatac 884
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aggtttatcgtgaacccactatccgagattgatgtggatcattgggttgacaggtcataa 119
Query: 885 agtatagagccggtggcagaggaattcctgtttgctgtgggtaaagcctatcttctgctt 944
||||| ||| || |||||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct: 120 agtatggagtcgttggcagcggaattcctgtttgctgtgggtaaagcctattttctgcgt 179
Query: 945 tcgtgttttttcttgcttctttcgattatggtgtaggaatgtggtcataatgtattagct 1004
| | |||||| |||||| | |||| |||||||||||||||||||| ||||| ||||
Sbjct: 180 tgtttatttttc--ccttcttgcaattagggtgtaggaatgtggtcatagtgtatcagct 237
Query: 1005 gat--tatcctttccctgctaattggactttattacgcttc 1043
||| ||| |||||||||||||||| ||| |||||||||||
Sbjct: 238 gattctattctttccctgctaattgaactgtattacgcttc 278
Score = 89.7 bits (45), Expect = 5e-016
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 756 gcagaactgtttggcctgtgagctccctgtacattcggttgcgatgtgagctccctg 812
||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gcagagctgtttgccctgtgagctccctgtacattcggtcgcgatgtgagctccctg 57
>gb|CW463888.1|CW463888 fsbb001f212n03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212n03, DNA
sequence
Length = 710
Score = 159 bits (80), Expect = 7e-037
Identities = 167/196 (85%)
Strand = Plus / Minus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| |||
Sbjct: 227 tgccgtgatatctaccattcagatcctgaatggaatatcattttgcttaggtactttaat 168
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
|| ||||| ||||| || |||||||| ||||| || |||||| | |||| ||| |||||
Sbjct: 167 ccggttggggctcaccccagtggataccttggtgaagacccatgtggaactcctaacaac 108
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|||||||||| ||||||||| |||| ||||| ||||||||| | || ||| | || |||
Sbjct: 107 cttatgcccttcgttcagcaaattgctgttggcaggaggccatcactaacaatatttgga 48
Query: 186 aatgactatgcaacaa 201
||| ||||||||||||
Sbjct: 47 aataactatgcaacaa 32
>gb|CF489143.1|CF489143 POL1_55_A05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_A05_A002 3', mRNA sequence
Length = 611
Score = 133 bits (67), Expect = 4e-029
Identities = 205/251 (81%)
Strand = Plus / Plus
Query: 288 tctagcatagggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggag 347
|||| |||||| |||||||| |||| |||||||||||||| ||| ||||| ||| |||||
Sbjct: 32 tctaacataggatgtgaagcatacacccttggaaccggaaaaggaacatcagtgttggag 91
Query: 348 attgttaaagcatttgagaaggcttctgggaagaaaatacctctgatttttggtgaaagg 407
|| || || |||||||||||||||||||| |||||||| ||| || | | ||| || ||
Sbjct: 92 atagtcaatgcatttgagaaggcttctggaaagaaaatccctttggtcatgggtcaacgg 151
Query: 408 cgcccaggtgatgcagagattctgttttcagagactactaaagcagagagggagcttaac 467
|| || |||||||| |||||||| |||||| | | | ||||||||||| ||||| ||
Sbjct: 152 cgtcctggtgatgctgagattctcttttcatcgccggcaaaagcagagagagagctccac 211
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
|||||||| ||||| || || ||| |||||| | |||| ||||||||||| ||||||
Sbjct: 212 tggaaagcgaaatatggcatcacagaaatgtgcagagacctgtggaactgggctagcaag 271
Query: 528 aacccttatgg 538
| |||||||||
Sbjct: 272 agcccttatgg 282
>gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_A05_A002 5', mRNA sequence
Length = 639
Score = 103 bits (52), Expect = 4e-020
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| |||
Sbjct: 545 tgccgtgatatctaccattcagatcctgaatggaatatcattttgcttaggtactttaat 604
Query: 66 ccagttggtgctcatcctagtggatatcttgg 97
|| ||||| ||||| || |||||||| |||||
Sbjct: 605 ccggttggggctcaccccagtggataccttgg 636
>gb|BZ344529.1|BZ344529 hp66h10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp66h10 5', DNA sequence
Length = 586
Score = 89.7 bits (45), Expect = 5e-016
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 300 tgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagca 359
|||||||| ||||||||||||||||||| ||| ||||| ||| ||||||| || || |||
Sbjct: 426 tgtgaagcatacaaccttggaaccggaaaaggaacatcagtgttggagatagtcaatgca 367
Query: 360 tttgagaaggcttctgg 376
|||||||||||||||||
Sbjct: 366 tttgagaaggcttctgg 350
>gb|BZ350855.1|BZ350855 ht61e11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht61e11 5', DNA sequence
Length = 698
Score = 89.7 bits (45), Expect = 5e-016
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 300 tgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagca 359
|||||||| ||||||||||||||||||| ||| ||||| ||| ||||||| || || |||
Sbjct: 454 tgtgaagcatacaaccttggaaccggaaaaggaacatcagtgttggagatagtcaatgca 395
Query: 360 tttgagaaggcttctgg 376
|||||||||||||||||
Sbjct: 394 tttgagaaggcttctgg 378
>gb|CW349438.1|CW349438 fsbb001f010e09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010e09, DNA
sequence
Length = 730
Score = 89.7 bits (45), Expect = 5e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 300 tgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagca 359
|||||||| ||||||||||||||||||| ||| ||||| ||| ||||||| || || |||
Sbjct: 124 tgtgaagcatacaaccttggaaccggaaaaggaacatcagtgttggagatagtcaatgca 183
Query: 360 tttgagaaggcttctgg 376
|||||||||||||||||
Sbjct: 184 tttgagaaggcttctgg 200
>gb|CW410329.1|CW410329 fsbb001f105a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105a14, DNA
sequence
Length = 672
Score = 89.7 bits (45), Expect = 5e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 300 tgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagca 359
|||||||| ||||||||||||||||||| ||| ||||| ||| ||||||| || || |||
Sbjct: 246 tgtgaagcatacaaccttggaaccggaaaaggaacatcagtgttggagatagtcaatgca 305
Query: 360 tttgagaaggcttctgg 376
|||||||||||||||||
Sbjct: 306 tttgagaaggcttctgg 322
>gb|CW493812.1|CW493812 fsbb001f284m09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284m09, DNA
sequence
Length = 734
Score = 89.7 bits (45), Expect = 5e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 300 tgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagca 359
|||||||| ||||||||||||||||||| ||| ||||| ||| ||||||| || || |||
Sbjct: 57 tgtgaagcatacaaccttggaaccggaaaaggaacatcagtgttggagatagtcaatgca 116
Query: 360 tttgagaaggcttctgg 376
|||||||||||||||||
Sbjct: 117 tttgagaaggcttctgg 133
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 510 tggaactgggccagcaagaacccttatgg 538
||||||||||| ||||||| |||||||||
Sbjct: 685 tggaactgggctagcaagagcccttatgg 713
>gb|CW346505.1|CW346505 fsbb001f006a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006a22, DNA
sequence
Length = 550
Score = 77.8 bits (39), Expect = 2e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 19 accgttcagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctc 78
|||||||||| ||||| ||||||||||| | || |||||||||||||| ||||||||||
Sbjct: 266 accgttcagaccctgattggaagatcatactgctcaggtacttcaatcctgttggtgctc 325
Query: 79 atcctagtggatatcttggcgaggacccacgaggaattcccaacaatcttatgccctatg 138
|||| || ||||| | ||||| ||||| | || | || ||||| | ||||||||||
Sbjct: 326 atccaagcggatacatcggcgaagacccctgtggtgtcccaaacaacttgatgccctatg 385
Query: 139 ttcagcaagttgcggttgg 157
|||||||||| || |||||
Sbjct: 386 ttcagcaagtcgctgttgg 404
>gb|CF759649.1|CF759649 DSAF1_48_A01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_48_A01_A011 5', mRNA sequence
Length = 283
Score = 77.8 bits (39), Expect = 2e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 19 accgttcagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctc 78
|||||||||| ||||| ||||||||||| | || |||||||||||||| ||||||||||
Sbjct: 42 accgttcagaccctgattggaagatcatactgctcaggtacttcaatcctgttggtgctc 101
Query: 79 atcctagtggatatcttggcgaggacccacgaggaattcccaacaatcttatgccctatg 138
|||| || ||||| | ||||| ||||| | || | || ||||| | ||||||||||
Sbjct: 102 atccaagcggatacatcggcgaagacccctgtggtgtcccaaacaacttgatgccctatg 161
Query: 139 ttcagcaagttgcggttgg 157
|||||||||| || |||||
Sbjct: 162 ttcagcaagtcgctgttgg 180
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 233 actggggtgcgtgattacatccatgttgttgacctggctga 273
>gb|AW285500.2|AW285500 LG1_241_D03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 108
Score = 75.8 bits (38), Expect = 8e-012
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 834 gtgaacccactatccgagattgatgtggatcattgggttgacaggtcatacagtatagag 893
|||||||| |||||| | |||||||||||||||||||||||||||||| |||| | | ||
Sbjct: 7 gtgaaccccctatccaaaattgatgtggatcattgggttgacaggtcaaacagaaaaaag 66
Query: 894 ccggtggcagaggaattcctgtttgctgtgggtaaagcctat 935
| |||||| |||||||| |||| || ||||||| |||||
Sbjct: 67 tggttggcaggggaattccagttttttgggggtaaaccctat 108
>gb|BG560333.1|BG560333 RHIZ2_73_B06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 73.8 bits (37), Expect = 3e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 19 accgttcagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctc 78
|||||||||| ||||| ||||||||||| | || |||||||||||||| ||||||||||
Sbjct: 499 accgttcagaccctgattggaagatcatactgctcaggtacttcaatcctgttggtgctc 558
Query: 79 atcctagtggata 91
|||| || |||||
Sbjct: 559 atccaagcggata 571
>gb|CD432207.1|CD432207 ETH1_26_G11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_G11_A002 5', mRNA sequence
Length = 788
Score = 73.8 bits (37), Expect = 3e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 19 accgttcagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctc 78
|||||||||| ||||| ||||||||||| | || |||||||||||||| ||||||||||
Sbjct: 707 accgttcagaccctgattggaagatcatactgctcaggtacttcaatcctgttggtgctc 766
Query: 79 atcctagtggata 91
|||| || |||||
Sbjct: 767 atccaagcggata 779
>gb|CN147262.1|CN147262 WOUND1_48_D07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_D07_A002 5', mRNA sequence
Length = 820
Score = 73.8 bits (37), Expect = 3e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 19 accgttcagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctc 78
|||||||||| ||||| ||||||||||| | || |||||||||||||| ||||||||||
Sbjct: 696 accgttcagaccctgattggaagatcatactgctcaggtacttcaatcctgttggtgctc 755
Query: 79 atcctagtggata 91
|||| || |||||
Sbjct: 756 atccaagcggata 768
>gb|BG560363.1|BG560363 RHIZ2_73_E06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 566
Score = 71.9 bits (36), Expect = 1e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 19 accgttcagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctc 78
|||||||||| ||||| ||||||||||| | || |||||||||||||| ||||||||||
Sbjct: 499 accgttcagaccctgattggaagatcatactgctcaggtacttcaatcctgttggtgctc 558
Query: 79 atcc 82
||||
Sbjct: 559 atcc 562
>gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 560
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 19 accgttcagatcctgaatggaagatcattttacttaggtacttcaatcc 67
|||||||||| ||||| ||||||||||| | |||||||||||||||||
Sbjct: 508 accgttcagaccctgattggaagatcatactgcttaggtacttcaatcc 556
>gb|CD208815.1|CD208815 HS1_44_A11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_44_A11_A012 3', mRNA sequence
Length = 676
Score = 56.0 bits (28), Expect = 8e-006
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 272 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 331
Query: 528 aacccttatggctatg 543
||||| ||||||||||
Sbjct: 332 aacccatatggctatg 347
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 11 actggggtgcgtgattacatccatgttgttgacctggctga 51
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 161 gcattcgagaaggtttctgggaagaaaat 189
>gb|CF485354.1|CF485354 POL1_31_B06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_B06_A002 3', mRNA sequence
Length = 568
Score = 56.0 bits (28), Expect = 8e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||||||||| ||||| |||||||||| ||||| || || ||| |||||| | |||
Sbjct: 6 aaagcagagagagagctccactggaaagcgaaatatggcatcacagaaatgtgcagagac 65
Query: 507 caatggaactgggccagcaagaacccttatgg 538
| ||||||||||| ||||||| |||||||||
Sbjct: 66 ctgtggaactgggctagcaagagcccttatgg 97
>gb|CW491537.1|CW491537 fsbb001f281h03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281h03, DNA
sequence
Length = 698
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | ||||| ||||||||||||| |||||||| ||||||||
Sbjct: 95 gagatgtgcagggaccagtggaactgggccaagaagaacccgtatggcta 46
>gb|BG933185.1|BG933185 WS1_91_C08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 559
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | ||||| ||||||||||||| |||||||| ||||||||
Sbjct: 185 gagatgtgcagggaccagtggaactgggccaagaagaacccgtatggcta 234
>gb|BG412608.1|BG412608 OV2_36_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 21 actggggtgcgtgattacatccatgttgttgacctggctga 61
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 282 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 341
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 342 aacccatacggctatg 357
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 171 gcattcgagaaggtttctgggaagaaaat 199
>gb|CB928908.1|CB928908 ABA1_38_A08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_38_A08_A012 3', mRNA sequence
Length = 690
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 30 actggggtgcgtgattacatccatgttgttgacctggctga 70
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 180 gcattcgagaaggtttctgggaagaaaat 208
Score = 40.1 bits (20), Expect = 0.45
Identities = 62/76 (81%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| |||| |||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 291 tggaaggcaagatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 350
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 351 aacccatacggctatg 366
>gb|CD203981.1|CD203981 HS1_3_B06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_B06_A012 3', mRNA sequence
Length = 672
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 11 actggggtgcgtgattacatccatgttgttgacctggctga 51
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 272 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 331
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 332 aacccatacggctatg 347
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 161 gcattcgagaaggtttctgggaagaaaat 189
>gb|CD207954.1|CD207954 HS1_36_D12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_36_D12_A012 3', mRNA sequence
Length = 687
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 30 actggggtgcgtgattacatccatgttgttgacctggctga 70
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 180 gcattcgagaaggtttctgggaagaaaat 208
Score = 40.1 bits (20), Expect = 0.45
Identities = 62/76 (81%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || | ||||||||| | || | ||||| ||||| ||||||
Sbjct: 291 tggaaggcaaaatacgggatctaggagatgtgcagagatctgtggaattgggcaagcaag 350
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 351 aacccatacggctatg 366
>gb|CD432110.1|CD432110 ETH1_26_G11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_G11_A002 3', mRNA sequence
Length = 674
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 30 actggggtgcgtgattacatccatgttgttgacctggctga 70
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 291 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 350
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 351 aacccatacggctatg 366
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 180 gcattcgagaaggtttctgggaagaaaat 208
>gb|CN147179.1|CN147179 WOUND1_48_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_D07_A002 3', mRNA sequence
Length = 743
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 97 actggggtgcgtgattacatccatgttgttgacctggctga 137
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 358 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 417
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 418 aacccatacggctatg 433
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 247 gcattcgagaaggtttctgggaagaaaat 275
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 129 atgccctatgttcagcaagttgcggttgg 157
|||||||||||||||||||| || |||||
Sbjct: 16 atgccctatgttcagcaagtcgctgttgg 44
>gb|CN149638.1|CN149638 WOUND1_64_B06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_64_B06_A002 3', mRNA sequence
Length = 717
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 70 actggggtgcgtgattacatccatgttgttgacctggctga 110
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 331 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 390
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 391 aacccatacggctatg 406
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 220 gcattcgagaaggtttctgggaagaaaat 248
>gb|CX615956.1|CX615956 GABR1_25_A05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_25_A05_A002 3', mRNA sequence
Length = 719
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 210 actggggtccgagattacatccatgtggttgaccttgctga 250
|||||||| || |||||||||||||| |||||||| |||||
Sbjct: 60 actggggtgcgtgattacatccatgttgttgacctggctga 100
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 321 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 380
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 381 aacccatacggctatg 396
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 210 gcattcgagaaggtttctgggaagaaaat 238
>gb|AW680990.1|AW680990 WS1_9_G07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 133 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 192
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 193 aacccatacggctatg 208
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 22 gcattcgagaaggtttctgggaagaaaat 50
>gb|AW681149.1|AW681149 WS1_9_G07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 29 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 88
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 89 aacccatacggctatg 104
>gb|AW747778.1|AW747778 WS1_76_G10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 89 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 148
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 149 aacccatacggctatg 164
>gb|AW925213.1|AW925213 WS1_76_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 480
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 89 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 148
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 149 aacccatacggctatg 164
>gb|BE595856.1|BE595856 PI1_49_B01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 601
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| ||||||||||| || || ||||||||| | || | ||||| ||||| ||||||
Sbjct: 268 tggaaggcaaaatacgggatcgaggagatgtgcagagatctgtggaattgggcaagcaag 327
Query: 528 aacccttatggctatg 543
||||| || |||||||
Sbjct: 328 aacccatacggctatg 343
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 212 tggggtccgagattacatccatgtggttgaccttgctga 250
|||||| || |||||||||||||| |||||||| |||||
Sbjct: 9 tggggtgcgtgattacatccatgttgttgacctggctga 47
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcatttgagaaggcttctgggaagaaaat 385
||||| ||||||| |||||||||||||||
Sbjct: 157 gcattcgagaaggtttctgggaagaaaat 185
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 254,573
Number of Sequences: 832831
Number of extensions: 254573
Number of successful extensions: 64601
Number of sequences better than 0.5: 83
Number of HSP's better than 0.5 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64285
Number of HSP's gapped (non-prelim): 221
length of query: 1175
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1155
effective length of database: 474,703,049
effective search space: 548282021595
effective search space used: 548282021595
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)