BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276425.2.1
(753 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN127328.1|CN127328 RHOH1_22_H02.b1_A002 Acid- and alkal... 720 0.0
gb|CW444261.1|CW444261 fsbb001f164m08k0 Sorghum methylation... 329 2e-088
gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum m... 56 5e-006
gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorgh... 56 5e-006
gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorgh... 56 5e-006
gb|CW295417.1|CW295417 104_776_11460918_148_35613_019 Sorgh... 56 5e-006
gb|CW485924.1|CW485924 fsbb001f248o11k0 Sorghum methylation... 56 5e-006
gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/ce... 56 5e-006
gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkal... 56 5e-006
gb|BG103631.1|BG103631 RHIZ2_38_H11.g1_A003 Rhizome2 (RHIZ2... 40 0.29
>gb|CN127328.1|CN127328 RHOH1_22_H02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_H02_A002 3', mRNA sequence
Length = 775
Score = 720 bits (363), Expect = 0.0
Identities = 443/467 (94%), Gaps = 2/467 (0%)
Strand = Plus / Plus
Query: 178 caagccgtgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccg 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 301 caagccatgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggatcg 360
Query: 238 tgcattcaattttggggataaccagatcttgcagatgtatgggttcacacacaagtcact 297
||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 361 tgcgttcaattttggtgataaccagatcttgcagatgtatggattcactcacaagtcact 420
Query: 298 agcaagcaggagagtgaagaggatcaggaacgagaccagcaacccacttgagacaaagga 357
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 421 tgcaagcaggagagtgaagaggatcaggaatgagaccagcaacccgcttgagacaaagga 480
Query: 358 tgagcttgggttgcttcatccagcattcaaggctgtgaagacttccacatgataattaga 417
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgagcttgggttgcttcatccggcattcaaggctgtgaagacttccacatgataattaga 540
Query: 418 gtacaattcaacttgttattttcttggttcgttctagatcctgttgggtctaaatccaaa 477
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtacaattccacttgttattttgttggttcgttctagatcctgttgggtctaaatccaaa 600
Query: 478 gtgttctttttgtagaatcgggtgacaacagaagtttgggttggggttatgggatggata 537
||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||
Sbjct: 601 gtgttctttttgtagaatctggtggcaacagaagtttgggttgggatcatgggatggata 660
Query: 538 tctttgttgtaatgtgaggtgttaggag-aattatgttatgtttatttattggcataagt 596
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct: 661 tctttgttgtaatgtgaggtattaggagaaatgatgttatgtttatttattggcataagt 720
Query: 597 tatgtcttacgctcgtagaaacgagtt-aatggatgaactcaagtta 642
|||||||||| |||||||||| ||||| |||||||| ||||| ||||
Sbjct: 721 tatgtcttacactcgtagaaatgagttaaatggatggactcaggtta 767
Score = 168 bits (85), Expect = 5e-040
Identities = 106/113 (93%)
Strand = Plus / Plus
Query: 1 ggtgtacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgg 60
||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 143 ggtgtacatcctcgcaacgcagcgcgagaagtggggtgataaggtttaccttgagaatgg 202
Query: 61 gtactacctccacggctactgggggatcttggtcgacaggtacgaggagatgc 113
||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 203 gtactaccttcatggctactgggggatcttggtcgacaggtatgaggagatgc 255
>gb|CW444261.1|CW444261 fsbb001f164m08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164m08, DNA
sequence
Length = 642
Score = 329 bits (166), Expect = 2e-088
Identities = 200/210 (95%), Gaps = 1/210 (0%)
Strand = Plus / Minus
Query: 1 ggtgtacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgg 60
||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 225 ggtgtacatcctcgcaacgcagcgcgagaagtggggtgataaggtttaccttgagaatgg 166
Query: 61 gtactacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaa 120
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 165 gtactaccttcatggctactgggggatcttggtcgacaggtatgaggagatgcttgagaa 106
Query: 121 ttacaagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 105 ttacaagccagggctcggcgatcaccggtggccgctcgtcacacactttgtcgggtgcaa 46
Query: 181 gccgtgtggcaaatttggagactaccctgt 210
||| ||||||||| ||||||||||||||||
Sbjct: 45 gccatgtggcaaa-ttggagactaccctgt 17
>gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520052, DNA
sequence
Length = 554
Score = 56.0 bits (28), Expect = 5e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||||||||||||||||| | ||| | || | || ||||||||||| ||||||
Sbjct: 443 tggtggacaggtacgaggagatgatggaggagcaccacccggggctcggcgacgaccggt 384
Query: 150 ggccactcgtcacacactttgtcgggtgcaag 181
||||| || |||| ||||| ||||| ||||||
Sbjct: 383 ggccattcatcacgcacttcgtcggctgcaag 352
>gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229737, DNA
sequence
Length = 641
Score = 56.0 bits (28), Expect = 5e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||||||||||||||||| | ||| | || | || ||||||||||| ||||||
Sbjct: 320 tggtggacaggtacgaggagatgatggaggagcaccacccggggctcggcgacgaccggt 261
Query: 150 ggccactcgtcacacactttgtcgggtgcaag 181
||||| || |||| ||||| ||||| ||||||
Sbjct: 260 ggccattcatcacgcacttcgtcggctgcaag 229
>gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 713
Score = 56.0 bits (28), Expect = 5e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||||||||||||||||| | ||| | || | || ||||||||||| ||||||
Sbjct: 426 tggtggacaggtacgaggagatgatggaggagcaccacccggggctcggcgacgaccggt 367
Query: 150 ggccactcgtcacacactttgtcgggtgcaag 181
||||| || |||| ||||| ||||| ||||||
Sbjct: 366 ggccattcatcacgcacttcgtcggctgcaag 335
>gb|CW295417.1|CW295417 104_776_11460918_148_35613_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 621
Score = 56.0 bits (28), Expect = 5e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||||||||||||||||| | ||| | || | || ||||||||||| ||||||
Sbjct: 435 tggtggacaggtacgaggagatgatggaggagcaccacccggggctcggcgacgaccggt 494
Query: 150 ggccactcgtcacacactttgtcgggtgcaag 181
||||| || |||| ||||| ||||| ||||||
Sbjct: 495 ggccattcatcacgcacttcgtcggctgcaag 526
>gb|CW485924.1|CW485924 fsbb001f248o11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f248o11, DNA
sequence
Length = 551
Score = 56.0 bits (28), Expect = 5e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||||||||||||||||| | ||| | || | || ||||||||||| ||||||
Sbjct: 185 tggtggacaggtacgaggagatgatggaggagcaccacccggggctcggcgacgaccggt 126
Query: 150 ggccactcgtcacacactttgtcgggtgcaag 181
||||| || |||| ||||| ||||| ||||||
Sbjct: 125 ggccattcatcacgcacttcgtcggctgcaag 94
>gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_E12_A007 3', mRNA sequence
Length = 658
Score = 56.0 bits (28), Expect = 5e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||||||||||||||||| | ||| | || | || ||||||||||| ||||||
Sbjct: 233 tggtggacaggtacgaggagatgatggaggagcaccacccggggctcggcgacgaccggt 292
Query: 150 ggccactcgtcacacactttgtcgggtgcaag 181
||||| || |||| ||||| ||||| ||||||
Sbjct: 293 ggccattcatcacccacttcgtcggctgcaag 324
>gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_A07_A002 3', mRNA sequence
Length = 729
Score = 56.0 bits (28), Expect = 5e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||||||||||||||||| | ||| | || | || ||||||||||| ||||||
Sbjct: 231 tggtggacaggtacgaggagatgatggaggagcaccacccggggctcggcgacgaccggt 290
Query: 150 ggccactcgtcacacactttgtcgggtgcaag 181
||||| || |||| ||||| ||||| ||||||
Sbjct: 291 ggccattcatcacgcacttcgtcggctgcaag 322
>gb|BG103631.1|BG103631 RHIZ2_38_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 609
Score = 40.1 bits (20), Expect = 0.29
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||| ||| ||||||||| | |||||| || | ||||| || || ||| | ||||
Sbjct: 238 tggtggacaagtatgaggagatgatggagaatcaccacccaggccttggtgatgagcggt 297
Query: 150 ggccactcgtcacacactttgtcgggtgcaagccgtgtgg 189
|||| | || || |||||||| ||||||||||| |||||
Sbjct: 298 ggccttttgtgactcactttgttgggtgcaagccatgtgg 337
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 177,515
Number of Sequences: 832831
Number of extensions: 177515
Number of successful extensions: 49175
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49148
Number of HSP's gapped (non-prelim): 18
length of query: 753
length of database: 491,359,669
effective HSP length: 20
effective length of query: 733
effective length of database: 474,703,049
effective search space: 347957334917
effective search space used: 347957334917
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)