BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276343.2.2
(1340 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN128039.1|CN128039 RHOH1_26_D06.g1_A002 Acid- and alkal... 1205 0.0
gb|BM326574.1|BM326574 PIC1_58_G07.b1_A002 Pathogen-infecte... 1021 0.0
gb|CN125396.1|CN125396 RHOH1_10_G05.g1_A002 Acid- and alkal... 969 0.0
gb|BG739471.1|BG739471 EM1_81_C09.b1_A002 Embryo 1 (EM1) So... 944 0.0
gb|BM318675.1|BM318675 PI1_16_C12.b9_A002 Pathogen induced ... 904 0.0
gb|BM323769.1|BM323769 PIC1_23_B11.b1_A002 Pathogen-infecte... 829 0.0
gb|BM331589.1|BM331589 PIC1_58_G07.g1_A002 Pathogen-infecte... 801 0.0
gb|BG464099.1|BG464099 EM1_69_F08.b1_A002 Embryo 1 (EM1) So... 785 0.0
gb|BM331588.1|BM331588 PIC1_58_G06.g1_A002 Pathogen-infecte... 785 0.0
gb|BM326573.1|BM326573 PIC1_58_G06.b1_A002 Pathogen-infecte... 745 0.0
gb|BF177028.1|BF177028 EM1_2_F09.g1_A002 Embryo 1 (EM1) Sor... 718 0.0
gb|BM326567.1|BM326567 PIC1_58_F06.b1_A002 Pathogen-infecte... 708 0.0
gb|BG411002.1|BG411002 EM1_28_E10.g1_A002 Embryo 1 (EM1) So... 700 0.0
gb|BG464426.1|BG464426 EM1_69_F08.g1_A002 Embryo 1 (EM1) So... 700 0.0
gb|BG411011.1|BG411011 EM1_28_F10.g1_A002 Embryo 1 (EM1) So... 698 0.0
gb|BG463380.1|BG463380 EM1_48_G10.g1_A002 Embryo 1 (EM1) So... 696 0.0
gb|CB924954.1|CB924954 ABA1_29_D09.b1_A012 Abscisic acid-tr... 686 0.0
gb|BE364816.2|BE364816 PI1_16_C12.g1_A002 Pathogen induced ... 646 0.0
gb|BG739298.1|BG739298 EM1_81_C09.g1_A002 Embryo 1 (EM1) So... 628 e-178
gb|BF177176.1|BF177176 EM1_2_F09.b1_A002 Embryo 1 (EM1) Sor... 622 e-176
gb|AW746654.1|AW746654 WS1_54_D09.g1_A002 Water-stressed 1 ... 620 e-176
gb|CN127957.1|CN127957 RHOH1_26_D06.b1_A002 Acid- and alkal... 617 e-174
gb|BF586827.1|BF586827 FM1_30_G12.g1_A003 Floral-Induced Me... 553 e-155
gb|BG322495.1|BG322495 EM1_28_F10.b1_A002 Embryo 1 (EM1) So... 539 e-151
gb|CF071577.1|CF071577 FE1_17_F01.b1_A002 Iron-deficient se... 533 e-149
gb|BG322487.1|BG322487 EM1_28_E10.b1_A002 Embryo 1 (EM1) So... 513 e-143
gb|BG462757.1|BG462757 EM1_45_B11.b1_A002 Embryo 1 (EM1) So... 490 e-136
gb|CD423964.1|CD423964 SA1_2_G06.g1_A002 Salicylic acid-tre... 466 e-129
gb|BG557042.1|BG557042 EM1_41_H02.g1_A002 Embryo 1 (EM1) So... 444 e-123
gb|BG947726.1|BG947726 IP1_8_D03.g1_A002 Immature pannicle ... 426 e-117
gb|BZ352162.1|BZ352162 hm86c05.g1 WGS-SbicolorF (JM107 adap... 392 e-107
gb|CW404501.1|CW404501 fsbb001f096k17f0 Sorghum methylation... 392 e-107
gb|BM331600.1|BM331600 PIC1_58_F06.g1_A002 Pathogen-infecte... 375 e-102
gb|BG462835.1|BG462835 EM1_45_C01.g1_A002 Embryo 1 (EM1) So... 240 3e-061
gb|BG557556.1|BG557556 EM1_53_A01.g1_A002 Embryo 1 (EM1) So... 238 1e-060
gb|BG463914.1|BG463914 EM1_52_D09.b1_A002 Embryo 1 (EM1) So... 196 4e-048
gb|BE595928.1|BE595928 PI1_50_A12.g1_A002 Pathogen induced ... 149 8e-034
gb|BM328279.1|BM328279 PIC1_23_B11.g1_A002 Pathogen-infecte... 94 4e-017
gb|BF421857.1|BF421857 FM1_11_C07.b1_A003 Floral-Induced Me... 86 1e-014
gb|BG463997.1|BG463997 EM1_52_D09.g1_A002 Embryo 1 (EM1) So... 74 4e-011
gb|CW148012.1|CW148012 104_542_11140191_116_35000_056 Sorgh... 66 9e-009
gb|CW205904.1|CW205904 104_634_11187315_116_36951_008 Sorgh... 66 9e-009
gb|BG462759.1|BG462759 EM1_45_C01.b1_A002 Embryo 1 (EM1) So... 64 4e-008
gb|AW745723.1|AW745723 WS1_37_A07.b1_A002 Water-stressed 1 ... 58 2e-006
gb|BG241454.1|BG241454 RHIZ2_49_D05.g1_A003 Rhizome2 (RHIZ2... 58 2e-006
gb|BG557935.1|BG557935 EM1_39_D06.g1_A002 Embryo 1 (EM1) So... 58 2e-006
gb|CD424878.1|CD424878 SA1_9_C06.b1_A002 Salicylic acid-tre... 58 2e-006
gb|CF071061.1|CF071061 FE1_15_D06.b1_A002 Iron-deficient se... 58 2e-006
gb|CW205905.1|CW205905 104_634_11187315_148_36952_008 Sorgh... 52 1e-004
gb|CW063640.1|CW063640 104_309_10522120_114_30136 Sorghum m... 48 0.002
gb|CW113521.1|CW113521 104_487_11105488_116_34554_050 Sorgh... 48 0.002
gb|CW138080.1|CW138080 104_525_11120015_116_34878_086 Sorgh... 48 0.002
gb|CW138081.1|CW138081 104_525_11120015_148_34874_086 Sorgh... 48 0.002
gb|CW169707.1|CW169707 104_579_11154814_116_36506_083 Sorgh... 48 0.002
gb|CW303036.1|CW303036 104_787_11465030_148_35673_057 Sorgh... 48 0.002
gb|CW348033.1|CW348033 fsbb001f008d13f0 Sorghum methylation... 48 0.002
gb|BG240250.1|BG240250 OV1_19_G01.b1_A002 Ovary 1 (OV1) Sor... 48 0.002
gb|BM326206.1|BM326206 PIC1_66_H12.b1_A002 Pathogen-infecte... 44 0.033
gb|CW312546.1|CW312546 104_802_11470816_116_35781_056 Sorgh... 42 0.13
gb|BF421806.1|BF421806 FM1_11_C07.g1_A003 Floral-Induced Me... 42 0.13
gb|BG102075.1|BG102075 RHIZ2_24_E07.g1_A003 Rhizome2 (RHIZ2... 42 0.13
gb|BG322963.1|BG322963 EM1_13_C04.g1_A002 Embryo 1 (EM1) So... 42 0.13
gb|BM331491.1|BM331491 PIC1_66_H12.g1_A002 Pathogen-infecte... 42 0.13
gb|CD426732.1|CD426732 SA1_25_D02.b1_A002 Salicylic acid-tr... 42 0.13
>gb|CN128039.1|CN128039 RHOH1_26_D06.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_26_D06_A002 5', mRNA sequence
Length = 764
Score = 1205 bits (608), Expect = 0.0
Identities = 735/775 (94%), Gaps = 13/775 (1%)
Strand = Plus / Plus
Query: 368 caggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctctggaat 427
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caggaaggatccccca-ggagtttgttcaacatggatgaagaatacaattcctctggaat 59
Query: 428 atagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagttacctg 487
|||| |||||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 60 atagtgaagaaagcagctgggctcccatctttgtgaggcagtcaaatttcaaattacctg 119
Query: 488 ctgacccatccactccgattatcatgattggtcctgggacagggctggctccttttagag 547
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 120 ctgacccatccactccgattatcatgattggtcctgggacaggactggccccttttagag 179
Query: 548 gcttcttgcaggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatcc 607
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 180 gcttcttgcaggaaaggttagcactgaaacaatctggaacagaactgggcacttcaatcc 239
Query: 608 ttttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactt 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactt 299
Query: 668 tccttgaggagggggcgctttctgagctaattgttgcattctctcgggaagggccaacga 727
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 300 tccttgaggagggggctctttctgagctaattattgcattctctcgggaagggccaacga 359
Query: 728 aagaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaa 787
||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 360 aagaatatgtgcagcataagatggtagagaaggccacagaaatttggaacatcatctcac 419
Query: 788 atggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaa 847
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 420 atggtggttacttatatgtatgcggtgatgccaagggaatggctagagacgtacacagaa 479
Query: 848 tgcttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatg 907
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 480 tgcttcatacaatagtccaagagcagggatctttggatagctccaaaaccgagagctatg 539
Query: 908 taaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacatcacctcaa 967
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct: 540 taaagagcctgcagatggaaggcaggtacctccgtgatgtatggtgacacatcaccccca 599
Query: 968 ataagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaa 1026
|| ||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct: 600 atcagccatagcttctagcgtgtggaattaaagctggctttgcgtgtat----------a 649
Query: 1027 tgccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatactgaaatgag 1085
|||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 650 tgccaatccagtcgtcagctttggaaatgaagcgtgccattgattatatactgaaatgag 709
Query: 1086 ttgatcagtgcaattctttgacatctaactatttattattatatgagatgggagg 1140
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttgatcagtgtaattctttgacatctaactatttattattatatgagatgggagg 764
>gb|BM326574.1|BM326574 PIC1_58_G07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 598
Score = 1021 bits (515), Expect = 0.0
Identities = 571/590 (96%)
Strand = Plus / Plus
Query: 123 tgaacgacttaggttcttggcctctcctgctggaaaggatgagtattctcaatggataac 182
|||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 9 tgaacgacttagattcttggcttctcccgctggaaaggatgagtactctcaatggataac 68
Query: 183 tgctagtcagaggagtcttcttgaagttatggctgcattcccttcagctaagccaccact 242
||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 69 tgctagtcagaggagccttattgaagttatggctgcattcccttcagctaagtcaccact 128
Query: 243 gggagtgtttttcgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatc 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gggagtgttttttgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatc 188
Query: 303 atctccaaagatggctccctccagaattcatgtaacatgtgcattagtttatgggccttc 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 atctccaatgatggctccctccagaattcatgtaacatgtgcattagtttatgggccttc 248
Query: 363 accaacaggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 accaacaggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctct 308
Query: 423 ggaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtt 482
||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 309 ggaatatagtgaagaaagcagctgggctcccatctttgtgaggcagtcaaatttcaaatt 368
Query: 483 acctgctgacccatccactccgattatcatgattggtcctgggacagggctggctccttt 542
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 369 acctgctgacccatccactccgattatcatgattggtcctgggacaggactggccccttt 428
Query: 543 tagaggcttcttgcaggaaaggttagcactgaaacaatctggagcagaactgggcacttc 602
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 429 tagaggcttcttgcagganaggttagcactgaaacaatctggaacagaactgggcacttc 488
Query: 603 aatccttttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aatccttttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgca 548
Query: 663 aactttccttgaggagggggcgctttctgagctaattgttgcattctctc 712
||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 549 aactttccttgaggagggggctctttctgagctaattattgcattctctc 598
>gb|CN125396.1|CN125396 RHOH1_10_G05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_G05_A002 5', mRNA sequence
Length = 837
Score = 969 bits (489), Expect = 0.0
Identities = 541/557 (97%), Gaps = 1/557 (0%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 gtaccttgcggactgcgcttctacgatacgctgatctactcaatccaccgaagaaggctg 340
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 341 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttagattct 400
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 401 tggcttctcccgctggaaaggatgagtactctcaatggataactgctagtcagaggagcc 460
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttc-gca 258
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 461 ttattgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttttgca 520
Query: 259 gcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggct 318
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 521 gcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaatgatggct 580
Query: 319 ccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatc 640
Query: 379 caccaaggagtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaa 438
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 641 caccaaggagtttgttcaacatggatgaagaatacaattcctctggaatatagtgaagaa 700
Query: 439 tgcagctgggctcccatatttgtgaggcagtcaaatttcaagttacctgctgacccatcc 498
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 701 agcagctgggctcccatctttgtgaggcagtcaaatttcaaattacctgctgacccatcc 760
Query: 499 actccgattatcatgattggtcctgggacagggctggctccttttagaggcttcttgcag 558
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 761 actccgattatcatgattggtcctgggacaggactggccccttttagaggcttcttgcag 820
Query: 559 gaaaggttagcactgaa 575
|||||||||||||||||
Sbjct: 821 gaaaggttagcactgaa 837
>gb|BG739471.1|BG739471 EM1_81_C09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 536
Score = 944 bits (476), Expect = 0.0
Identities = 515/528 (97%)
Strand = Plus / Plus
Query: 188 gtcagaggagtcttcttgaagttatggctgcattcccttcagctaagccaccactgggag 247
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtcagaggagccttattgaagttatggctgcattcccttcagctaagccaccactgggag 68
Query: 248 tgtttttcgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctc 307
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tgttttttgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctc 128
Query: 308 caaagatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaa 367
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 caatgatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaa 188
Query: 368 caggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctctggaat 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 caggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctctggaat 248
Query: 428 atagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagttacctg 487
|||| |||||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 249 atagtgaagaaagcagctgggctcccatctttgtgaggcagtcaaatttcaaattacctg 308
Query: 488 ctgacccatccactccgattatcatgattggtcctgggacagggctggctccttttagag 547
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 309 ctgacccatccactccgattatcatgattggtcctgggacaggactggccccttttagag 368
Query: 548 gcttcttgcaggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatcc 607
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 369 gcttcttgcaggaaaggttagcactgaaacaatctggaacagaactgggcacttcaatcc 428
Query: 608 ttttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactt 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactt 488
Query: 668 tccttgaggagggggcgctttctgagctaattgttgcattctctcggg 715
|||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 489 tccttgaggagggggctctttctgagctaattattgcattctctcggg 536
>gb|BM318675.1|BM318675 PI1_16_C12.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 588
Score = 904 bits (456), Expect = 0.0
Identities = 495/508 (97%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 81 gtaccttgcggactgcgcttctacgatacgctgatctactcaatccaccgaagaaggctg 140
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 141 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttagattct 200
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 201 tggcttctcccgctggaaaggatgagtactctcaatggataactgctagtcagaggagcc 260
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcag 259
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttattgaagttatggctgcattcccttcagctaagccaccactgggagtgttttttgcag 320
Query: 260 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctc 319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaatgatggctc 380
Query: 320 cctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatcc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatcc 440
Query: 380 accaaggagtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaat 439
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 accaaggagtttgttcaacatggatgaagaatacaattcctctggaatatagtgaagaaa 500
Query: 440 gcagctgggctcccatatttgtgaggcagtcaaatttcaagttacctgctgacccatcca 499
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gcagctgggctcccatctttgtgaggcagtcaaatttcaaattacctgctgacccatcca 560
Query: 500 ctccgattatcatgattggtcctgggac 527
||||||||||||||||||||||||||||
Sbjct: 561 ctccgattatcatgattggtcctgggac 588
>gb|BM323769.1|BM323769 PIC1_23_B11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 474
Score = 829 bits (418), Expect = 0.0
Identities = 454/466 (97%)
Strand = Plus / Plus
Query: 58 ctcaatccaccgaagaaggctgctttgcttgctttagcttctcatgcatctgatccagct 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ctcaatccaccgaagaaggctgctttgcttgctttagcttctcatgcatctgatccagct 68
Query: 118 gaagctgaacgacttaggttcttggcctctcctgctggaaaggatgagtattctcaatgg 177
||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 69 gaagctgaacgacttagattcttggcttctcccgctggaaaggatgagtactctcaatgg 128
Query: 178 ataactgctagtcagaggagtcttcttgaagttatggctgcattcccttcagctaagcca 237
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 129 ataactgctagtcagaggagccttattgaagttatggctgcattcccttcagctaagcca 188
Query: 238 ccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccacgatactactcaatt 297
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ccactgggagtgttttttgcagcaatagctcctcgtctgcaaccacgatactactcaatt 248
Query: 298 tcatcatctccaaagatggctccctccagaattcatgtaacatgtgcattagtttatggg 357
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcatcatctccaatgatggctccctccagaattcatgtaacatgtgcattagtttatggg 308
Query: 358 ccttcaccaacaggaaggatccaccaaggagtttgttcaacatggatgaagaatacaatt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccttcaccaacaggaaggatccaccaaggagtttgttcaacatggatgaagaatacaatt 368
Query: 418 cctctggaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttc 477
|||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 369 cctctggaatatagtgaagaaagcagctgggctcccatctttgtgaggcagtcaaatttc 428
Query: 478 aagttacctgctgacccatccactccgattatcatgattggtcctg 523
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaattacctgctgacccatccactccgattatcatgattggtcctg 474
>gb|BM331589.1|BM331589 PIC1_58_G07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 525
Score = 801 bits (404), Expect = 0.0
Identities = 503/535 (94%), Gaps = 12/535 (2%)
Strand = Plus / Plus
Query: 619 tgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactttccttgaggag 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactttccttgaggag 60
Query: 679 ggggcgctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtg 738
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggggctctttctgagctaattattgcattctctcgggaagggccaacgaaagaatatgtg 120
Query: 739 cagcataagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttac 798
|||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 121 cagcataagatggtagagaaggccacagaaatttggaacatcatctcacatggtggttac 180
Query: 799 ttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcataca 858
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 181 ttatatgtatgcggtgatgccaagggaatggctagagacgtacacagaatgcttcataca 240
Query: 859 atagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctg 918
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 atagtccaagagcagggatctttggatagctccaaaaccgagagctatgtaaagagcctg 300
Query: 919 cagatggaaggaaggtacctccgtgatgtatggtgacacatcacctcaaataagccatag 978
||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 301 cagatggaaggcaggtacctccgtgatgtatggtgacacatcacccccaatcagccatag 360
Query: 979 c-tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaa 1037
| |||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct: 361 cttctagcgtgtggaattaaagctggctttgcgtgtat----------atgccaatccag 410
Query: 1038 tcgtcagctttgg-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgc 1096
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 411 tcgtcagctttggaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgt 470
Query: 1097 aattctttgacatctaactatttattattatatgagatgggaggaactgatggag 1151
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 471 aattctttgacatctaactatttattattatatgagatgggaggaactgagggag 525
>gb|BG464099.1|BG464099 EM1_69_F08.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 603
Score = 785 bits (396), Expect = 0.0
Identities = 439/452 (97%), Gaps = 1/452 (0%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 152 gtaccttgcggactgcgcttctacgatacgctgatctactcaatccaccgaagaaggctg 211
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 212 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttagattct 271
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 272 tggcttctcccgctggaaaggatgagtactctcaatggataactgctagtcagaggagcc 331
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtg-tttttcgca 258
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 332 ttattgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttttgca 391
Query: 259 gcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggct 318
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 392 gcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaatgatggct 451
Query: 319 ccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatc 511
Query: 379 caccaaggagtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaa 438
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 512 caccaaggagtttgttcaacatggatgaagaatacaattcctctggaatatagtgaagaa 571
Query: 439 tgcagctgggctcccatatttgtgaggcagtc 470
|||||||||||||||| ||||||||||||||
Sbjct: 572 agcagctgggctcccatctttgtgaggcagtc 603
>gb|BM331588.1|BM331588 PIC1_58_G06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 518
Score = 785 bits (396), Expect = 0.0
Identities = 495/527 (93%), Gaps = 12/527 (2%)
Strand = Plus / Plus
Query: 627 ccgtaatatggactacatatatgaagatgagttgcaaactttccttgaggagggggcgct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2 ccgtaatatggactacatatatgaagatgagttgcaaactttccttgaggagggggctct 61
Query: 687 ttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataa 746
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttctgagctaattattgcattctctcgggaagggccaacgaaagaatatgtgcagcataa 121
Query: 747 gatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatatgt 806
|||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 122 gatggtagagaaggccacagaaatttggaacatcatctcacatggtggttacttatatgt 181
Query: 807 ttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtcca 866
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 182 atgcggtgatgccaagggaatggctagagacgtacacagaatgcttcatacaatagtcca 241
Query: 867 agagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatgga 926
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agagcagggatctttggatagctccaaaaccgagagctatgtaaagagcctgcagatgga 301
Query: 927 aggaaggtacctccgtgatgtatggtgacacatcacctcaaataagccatagc-tctagc 985
||| ||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||
Sbjct: 302 aggcaggtacctccgtgatgtatggtgacacatcacccccaatcagccatagcttctagc 361
Query: 986 gtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtcagc 1045
|||||||| ||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 362 gtgtggaattaaagctggctttgcgtgtat----------atgccaatccagtcgtcagc 411
Query: 1046 tttgg-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgcaattcttt 1104
||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 412 tttggaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgtaattcttt 471
Query: 1105 gacatctaactatttattattatatgagatgggaggaactgatggag 1151
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 472 gacatctaactatttattattatatgagatgggaggaactgagggag 518
>gb|BM326573.1|BM326573 PIC1_58_G06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 444
Score = 745 bits (376), Expect = 0.0
Identities = 421/436 (96%)
Strand = Plus / Plus
Query: 123 tgaacgacttaggttcttggcctctcctgctggaaaggatgagtattctcaatggataac 182
|||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 9 tgaacgacttagattcttggcttctcccgctggaaaggatgagtactctcaatggataac 68
Query: 183 tgctagtcagaggagtcttcttgaagttatggctgcattcccttcagctaagccaccact 242
||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 69 tgctagtcagaggagccttattgaagttatggctgcattcccttcagctaagtcaccact 128
Query: 243 gggagtgtttttcgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatc 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gggagtgttttttgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatc 188
Query: 303 atctccaaagatggctccctccagaattcatgtaacatgtgcattagtttatgggccttc 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 atctccaatgatggctccctccagaattcatgtaacatgtgcattagtttatgggccttc 248
Query: 363 accaacaggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 accaacaggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctct 308
Query: 423 ggaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtt 482
||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 309 ggaatatagtgaagaaagcagctgggctcccatctttgtgaggcagtcaaatttcaaatt 368
Query: 483 acctgctgacccatccactccgattatcatgattggtcctgggacagggctggctccttt 542
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 369 acctgctgacccatccactccgattatcatgattggtcctgggacaggactggccccttt 428
Query: 543 tagaggcttcttgcag 558
||||||||||||||||
Sbjct: 429 tagaggcttcttgcag 444
>gb|BF177028.1|BF177028 EM1_2_F09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 615
Score = 718 bits (362), Expect = 0.0
Identities = 476/512 (92%), Gaps = 14/512 (2%)
Strand = Plus / Plus
Query: 671 ttgaggagggggcgctttctgagctaattgttgcattctctcgggaagggccaacgaaag 730
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ttgaggagggggctctttctgagctaattattgcattctctcgggaagggccaacgaaag 60
Query: 731 aatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaatg 790
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||
Sbjct: 61 aatatgtgcagcataagatggtagagaaggccacagaaatttggaacatcatctcacatg 120
Query: 791 gtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgc 850
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 121 gtggttacttatatgtatgcggtgatgccaagggaatggctagagacgtacacagaatgc 180
Query: 851 ttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgtaa 910
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 181 ttcatacaatagtccaagagcagggatctttggatagctccaaaaccgagagctatgtaa 240
Query: 911 agagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacatcacctcaaata 970
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct: 241 agagcctgcagatggaaggcaggtacctccgtgatgtatggtgacacatcacccccaatc 300
Query: 971 agccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgc 1029
||||||||| |||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 301 agccatagcttctagcgtgtggaattaaagctggctttgcgtgtat----------atgc 350
Query: 1030 caacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatactgaaatgagttg 1088
||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 351 caatccagtcgtcagctttggaaatgaagcgtgccattgattatatactgaaatgagttg 410
Query: 1089 atcagtgcaattctttgacatctaactatttattattatatgagatgggaggaactgatg 1148
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 411 atcagtgtaattctttgacatctaactatttattattatatgagatgggaggaactgagg 470
Query: 1149 --gagaataaatgctgctgtagatttgtagaa 1178
|||||||| ||||| |||||||||||||||
Sbjct: 471 gagagaataagtgctgttgtagatttgtagaa 502
Score = 119 bits (60), Expect = 7e-025
Identities = 87/92 (94%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 520 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 579
Query: 1258 tactgtttgagacgaggacattatgtatacta 1289
||| |||| |||||||||||||| ||||||||
Sbjct: 580 tac-gttt-agacgaggacatta-gtatacta 608
>gb|BM326567.1|BM326567 PIC1_58_F06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 453
Score = 708 bits (357), Expect = 0.0
Identities = 423/445 (95%)
Strand = Plus / Plus
Query: 123 tgaacgacttaggttcttggcctctcctgctggaaaggatgagtattctcaatggataac 182
||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 9 tgaacgacttacattcttggcttctcccgctggaaaggatgagtactctcaatggataac 68
Query: 183 tgctagtcagaggagtcttcttgaagttatggctgcattcccttcagctaagccaccact 242
||||||||| ||||| ||| |||||| |||||||||||||||||||||||| |||||||
Sbjct: 69 tgctagtcacaggagccttattgaagatatggctgcattcccttcagctaactcaccact 128
Query: 243 gggagtgtttttcgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatc 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gggagtgttttttgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatc 188
Query: 303 atctccaaagatggctccctccagaattcatgtaacatgtgcattagtttatgggccttc 362
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 189 atctccaatgatggctccctccagaattcatgtaacatgtgcattattttatgggccttc 248
Query: 363 accaacaggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 accaacaggaaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctct 308
Query: 423 ggaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtt 482
||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 309 ggaatatagtgaagaaagcagctgggctcccatctttgtgaggcagtcaaatttcaaatt 368
Query: 483 acctgctgacccatccactccgattatcatgattggtcctgggacagggctggctccttt 542
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct: 369 acctgctgacccatccactccgattatcatgattggtcctgggacaggactggcccctat 428
Query: 543 tagaggcttcttgcaggaaaggtta 567
|||||||||||||||||| ||||||
Sbjct: 429 tagaggcttcttgcaggacaggtta 453
>gb|BG411002.1|BG411002 EM1_28_E10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 646
Score = 700 bits (353), Expect = 0.0
Identities = 467/503 (92%), Gaps = 14/503 (2%)
Strand = Plus / Plus
Query: 680 gggcgctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgc 739
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggctctttctgagctaattattgcattctctcgggaagggccaacgaaagaatatgtgc 60
Query: 740 agcataagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttact 799
||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 61 agcataagatggtagagaaggccacagaaatttggaacatcatctcacatggtggttact 120
Query: 800 tatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaa 859
||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 121 tatatgtatgcggtgatgccaagggaatggctagagacgtacacagaatgcttcatacaa 180
Query: 860 tagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgc 919
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 181 tagtccaagagcagggatctttggatagctccaaaaccgagagctatgtaaagagcctgc 240
Query: 920 agatggaaggaaggtacctccgtgatgtatggtgacacatcacctcaaataagccatagc 979
|||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 241 agatggaaggcaggtacctccgtgatgtatggtgacacatcacccccaatcagccatagc 300
Query: 980 -tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaat 1038
|||||||||||||| ||||||||||||||||||||| ||||||| ||| |
Sbjct: 301 ttctagcgtgtggaattaaagctggctttgcgtgtat----------atgccaatccagt 350
Query: 1039 cgtcagctttgg-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgca 1097
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 351 cgtcagctttggaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgta 410
Query: 1098 attctttgacatctaactatttattattatatgagatgggaggaactgatg--gagaata 1155
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 411 attctttgacatctaactatttattattatatgagatgggaggaactgagggagagaata 470
Query: 1156 aatgctgctgtagatttgtagaa 1178
| ||||| |||||||||||||||
Sbjct: 471 agtgctgttgtagatttgtagaa 493
Score = 149 bits (75), Expect = 8e-034
Identities = 123/136 (90%), Gaps = 6/136 (4%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 511 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 570
Query: 1258 tactgtttgagac-gagg-acattatgtatac----tactctagaaggctaccgaaacca 1311
||||||||||||| |||| ||||||||||||| |||| |||||||| ||| ||| ||
Sbjct: 571 tactgtttgagacagaggaacattatgtatactaagtactttagaaggccacctaaaaca 630
Query: 1312 aattttgcatctgttt 1327
|||||||||| |||||
Sbjct: 631 aattttgcatatgttt 646
>gb|BG464426.1|BG464426 EM1_69_F08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 629
Score = 700 bits (353), Expect = 0.0
Identities = 467/503 (92%), Gaps = 14/503 (2%)
Strand = Plus / Plus
Query: 680 gggcgctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgc 739
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggctctttctgagctaattattgcattctctcgggaagggccaacgaaagaatatgtgc 60
Query: 740 agcataagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttact 799
||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 61 agcataagatggtagagaaggccacagaaatttggaacatcatctcacatggtggttact 120
Query: 800 tatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaa 859
||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 121 tatatgtatgcggtgatgccaagggaatggctagagacgtacacagaatgcttcatacaa 180
Query: 860 tagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgc 919
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 181 tagtccaagagcagggatctttggatagctccaaaaccgagagctatgtaaagagcctgc 240
Query: 920 agatggaaggaaggtacctccgtgatgtatggtgacacatcacctcaaataagccatagc 979
|||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 241 agatggaaggcaggtacctccgtgatgtatggtgacacatcacccccaatcagccatagc 300
Query: 980 -tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaat 1038
|||||||||||||| ||||||||||||||||||||| ||||||| ||| |
Sbjct: 301 ttctagcgtgtggaattaaagctggctttgcgtgtat----------atgccaatccagt 350
Query: 1039 cgtcagctttgg-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgca 1097
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 351 cgtcagctttggaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgta 410
Query: 1098 attctttgacatctaactatttattattatatgagatgggaggaactgatg--gagaata 1155
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 411 attctttgacatctaactatttattattatatgagatgggaggaactgagggagagaata 470
Query: 1156 aatgctgctgtagatttgtagaa 1178
| ||||| |||||||||||||||
Sbjct: 471 agtgctgttgtagatttgtagaa 493
Score = 149 bits (75), Expect = 8e-034
Identities = 90/94 (95%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 511 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 570
Query: 1258 tactgtttgagacgagga--cattatgtatacta 1289
|||||||||||||||||| ||||||||||||||
Sbjct: 571 tactgtttgagacgaggacccattatgtatacta 604
>gb|BG411011.1|BG411011 EM1_28_F10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 628
Score = 698 bits (352), Expect = 0.0
Identities = 463/498 (92%), Gaps = 14/498 (2%)
Strand = Plus / Plus
Query: 685 ctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcat 744
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctttctgagctaattattgcattctctcgggaagggccaacgaaagaatatgtgcagcat 64
Query: 745 aagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatat 804
|||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 65 aagatggtagagaaggccacagaaatttggaacatcatctcacatggtggttacttatat 124
Query: 805 gtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtc 864
|| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 125 gtatgcggtgatgccaagggaatggctagagacgtacacagaatgcttcatacaatagtc 184
Query: 865 caagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatg 924
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 185 caagagcagggatctttggatagctccaaaaccgagagctatgtaaagagcctgcagatg 244
Query: 925 gaaggaaggtacctccgtgatgtatggtgacacatcacctcaaataagccatagc-tcta 983
||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 245 gaaggcaggtacctccgtgatgtatggtgacacatcacccccaatcagccatagcttcta 304
Query: 984 gcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtca 1043
|||||||||| ||||||||||||||||||||| ||||||| ||| ||||||
Sbjct: 305 gcgtgtggaattaaagctggctttgcgtgtat----------atgccaatccagtcgtca 354
Query: 1044 gctttgg-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgcaattct 1102
||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 355 gctttggaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgtaattct 414
Query: 1103 ttgacatctaactatttattattatatgagatgggaggaactgatg--gagaataaatgc 1160
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct: 415 ttgacatctaactatttattattatatgagatgggaggaactgagggagagaataagtgc 474
Query: 1161 tgctgtagatttgtagaa 1178
|| |||||||||||||||
Sbjct: 475 tgttgtagatttgtagaa 492
Score = 167 bits (84), Expect = 3e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 510 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 569
Query: 1258 tactgtttgagacgaggacattatgtatacta 1289
||||||||||||||||||||||||||||||||
Sbjct: 570 tactgtttgagacgaggacattatgtatacta 601
>gb|BG463380.1|BG463380 EM1_48_G10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 670
Score = 696 bits (351), Expect = 0.0
Identities = 462/497 (92%), Gaps = 14/497 (2%)
Strand = Plus / Plus
Query: 686 tttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcata 745
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttctgagctaattattgcattctctcgggaagggccaacgaaagaatatgtgcagcata 60
Query: 746 agatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatatg 805
||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 61 agatggtagagaaggccacagaaatttggaacatcatctcacatggtggttacttatatg 120
Query: 806 tttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtcc 865
| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 121 tatgcggtgatgccaagggaatggctagagacgtacacagaatgcttcatacaatagtcc 180
Query: 866 aagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatgg 925
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagagcagggatctttggatagctccaaaaccgagagctatgtaaagagcctgcagatgg 240
Query: 926 aaggaaggtacctccgtgatgtatggtgacacatcacctcaaataagccatagc-tctag 984
|||| ||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 241 aaggcaggtacctccgtgatgtatggtgacacatcacccccaatcagccatagcttctag 300
Query: 985 cgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtcag 1044
||||||||| ||||||||||||||||||||| ||||||| ||| |||||||
Sbjct: 301 cgtgtggaattaaagctggctttgcgtgtat----------atgccaatccagtcgtcag 350
Query: 1045 ctttgg-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgcaattctt 1103
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 351 ctttggaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgtaattctt 410
Query: 1104 tgacatctaactatttattattatatgagatgggaggaactgatg--gagaataaatgct 1161
||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct: 411 tgacatctaactatttattattatatgagatgggaggaactgagggagagaataagtgct 470
Query: 1162 gctgtagatttgtagaa 1178
| |||||||||||||||
Sbjct: 471 gttgtagatttgtagaa 487
Score = 184 bits (93), Expect = 1e-044
Identities = 124/134 (92%), Gaps = 4/134 (2%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 505 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 564
Query: 1258 tactgtttgagacgaggacattatgtatac----tactctagaaggctaccgaaaccaaa 1313
|||||||||||||||||||||||||||||| |||| |||||||| ||| ||| ||||
Sbjct: 565 tactgtttgagacgaggacattatgtatactaagtactttagaaggccacctaaaacaaa 624
Query: 1314 ttttgcatctgttt 1327
||||||||||||||
Sbjct: 625 ttttgcatctgttt 638
>gb|CB924954.1|CB924954 ABA1_29_D09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_D09_A012 3', mRNA sequence
Length = 628
Score = 686 bits (346), Expect = 0.0
Identities = 457/492 (92%), Gaps = 14/492 (2%)
Strand = Plus / Plus
Query: 691 gagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 750
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagctaattattgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 60
Query: 751 gtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgc 810
|| || ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 61 gtagagaaggccacagaaatttggaacatcatctcacatggtggttacttatatgtatgc 120
Query: 811 ggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagag 870
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 121 ggtgatgccaagggaatggctagagacgtacacagaatgcttcatacaatagtccaagag 180
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctgcagatggaaggc 240
Query: 931 aggtacctccgtgatgtatggtgacacatcacctcaaataagccatagc-tctagcgtgt 989
||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||
Sbjct: 241 aggtacctccgtgatgtatggtgacacatcacccccaatcagccatagcttctagcgtgt 300
Query: 990 ggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtcagctttg 1049
|||| ||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct: 301 ggaattaaagctggctttgcgtgtat----------atgccaatccagtcgtcagctttg 350
Query: 1050 g-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgcaattctttgaca 1108
| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 351 gaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgtaattctttgaca 410
Query: 1109 tctaactatttattattatatgagatgggaggaactgatg--gagaataaatgctgctgt 1166
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||
Sbjct: 411 tctaactatttattattatatgagatgggaggaactgagggagagaataagtgctgttgt 470
Query: 1167 agatttgtagaa 1178
||||||||||||
Sbjct: 471 agatttgtagaa 482
Score = 174 bits (88), Expect = 1e-041
Identities = 119/129 (92%), Gaps = 4/129 (3%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 500 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 559
Query: 1258 tactgtttgagacgaggacattatgtatac----tactctagaaggctaccgaaaccaaa 1313
|||||||||||||||||||||||||||||| |||| |||||||| ||| ||| ||||
Sbjct: 560 tactgtttgagacgaggacattatgtatactaagtactttagaaggccacctaaaacaaa 619
Query: 1314 ttttgcatc 1322
|||||||||
Sbjct: 620 ttttgcatc 628
>gb|BE364816.2|BE364816 PI1_16_C12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 584
Score = 646 bits (326), Expect = 0.0
Identities = 432/465 (92%), Gaps = 13/465 (2%)
Strand = Plus / Plus
Query: 717 agggccaacgaaagaatatgtgcagcataagatggtggaaaaggccacagatatttggaa 776
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1 agggccaacgaaagaatatgtgcagcataagatggtagagaaggccacagaaatttggaa 60
Query: 777 catcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatggctagaga 836
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 catcatctcacatggtggttacttatatgtatgcggtgatgccaagggaatggctagaga 120
Query: 837 tgtacacaaaatgcttcatacaatagtccaagagcagggatctttggataactccaaaac 896
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 cgtacacagaatgcttcatacaatagtccaagagcagggatctttggatagctccaaaac 180
Query: 897 cgagagctatgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgaca 956
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 cgagagctatgtaaagagcctgcagatggaaggcaggtacctccgtgatgtatggtgaca 240
Query: 957 catcacctcaaataagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtat 1015
||||||| | ||| ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 241 catcacccccaatcagccatagcttctagcgtgtggaattaaagctggctttgcgtgtat 300
Query: 1016 gacatgtctaatgccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatat 1074
||||||| ||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct: 301 ----------atgccaatccagtcgtcagctttggaaatgaagcgtgccattgattatat 350
Query: 1075 actgaaatgagttgatcagtgcaattctttgacatctaactatttattattatatgagat 1134
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actgaaatgagttgatcagtgtaattctttgacatctaactatttattattatatgagat 410
Query: 1135 gggaggaactgatg-gagaataaatgctgctgtagatttgtagaa 1178
|||||||||||| | |||||||| ||||| |||||||||||||||
Sbjct: 411 gggaggaactgaggagagaataagtgctgttgtagatttgtagaa 455
Score = 167 bits (84), Expect = 3e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 473 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 532
Query: 1258 tactgtttgagacgaggacattatgtatacta 1289
||||||||||||||||||||||||||||||||
Sbjct: 533 tactgtttgagacgaggacattatgtatacta 564
>gb|BG739298.1|BG739298 EM1_81_C09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 587
Score = 628 bits (317), Expect = e-178
Identities = 425/459 (92%), Gaps = 14/459 (3%)
Strand = Plus / Plus
Query: 724 acgaaagaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatc 783
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 1 acgaaagaatatgtgcagcataagatggtagagaaggccacagaaatttggaacatcatc 60
Query: 784 tcaaatggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacac 843
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 61 tcacatggtggttacttatatgtatgcggtgatgccaagggaatggctagagacgtacac 120
Query: 844 aaaatgcttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagc 903
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 agaatgcttcatacaatagtccaagagcagggatctttggatagctccaaaaccgagagc 180
Query: 904 tatgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacatcacc 963
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 tatgtaaagagcctgcagatggaaggcaggtacctccgtgatgtatggtgacacatcacc 240
Query: 964 tcaaataagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgt 1022
| ||| ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 241 cccaatcagccatagcttctagcgtgtggaattaaagctggctttgcgtgtat------- 293
Query: 1023 ctaatgccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatactgaaa 1081
||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 294 ---atgccaatccagtcgtcagctttggaaatgaagcgtgccattgattatatactgaaa 350
Query: 1082 tgagttgatcagtgcaattctttgacatctaactatttattattatatgagatgggagga 1141
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgagttgatcagtgtaattctttgacatctaactatttattattatatgagatgggagga 410
Query: 1142 actgatg--gagaataaatgctgctgtagatttgtagaa 1178
||||| | |||||||| ||||| |||||||||||||||
Sbjct: 411 actgagggagagaataagtgctgttgtagatttgtagaa 449
Score = 135 bits (68), Expect = 1e-029
Identities = 87/92 (94%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
|||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 467 ccctgacaagtt-gtagccaaggggatacatcatacagtttgagatgaggacattatgta 525
Query: 1258 tactgtttgagacgaggacattatgtatacta 1289
||||||| |||||||||||||||||||||||
Sbjct: 526 tactgttgaagacgaggacattatgtatacta 557
>gb|BF177176.1|BF177176 EM1_2_F09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 622 bits (314), Expect = e-176
Identities = 341/350 (97%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 190 gtaccttgcggactgcgcttctacgatacgctgatctactcaatccaccgaagaaggctg 249
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 250 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttagattct 309
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 310 tggcttctcccgctggaaaggatgagtactctcaatggataactgctagtcagaggagcc 369
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcag 259
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 370 ttattgaagttatggctgcattcccttcagctaagccaccactgggagtgttttttgcag 429
Query: 260 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctc 319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 430 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaatgatggctc 489
Query: 320 cctccagaattcatgtaacatgtgcattagtttatgggccttcaccaaca 369
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cctccagaattcatgtaacatgtgcattagtttatgggccttcaccaaca 539
>gb|AW746654.1|AW746654 WS1_54_D09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 620 bits (313), Expect = e-176
Identities = 427/463 (92%), Gaps = 14/463 (3%)
Strand = Plus / Plus
Query: 720 gccaacgaaagaatatgtgcagcataagatggtggaaaaggccacagatatttggaacat 779
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 1 gccaacgaaagaatatgtgcagcataagatggtagagaaggccacagaaatttggaacat 60
Query: 780 catctcaaatggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgt 839
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 61 catctcacatggtggttacttatatgtatgcggtgatgccaagggaatggctagagacgt 120
Query: 840 acacaaaatgcttcatacaatagtccaagagcagggatctttggataactccaaaaccga 899
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 acacagaatgcttcatacaatagtccaagagcagggatctttggatagctccaaaaccga 180
Query: 900 gagctatgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacat 959
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 gagctatgtaaagagcctgcagatggaaggcaggtacctccgtgatgtatggtgacacat 240
Query: 960 cacctcaaataagccatag-ctctagcgtgtggaagtaaagctggctttgcgtgtatgac 1018
|||| | ||| |||||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 241 cacccccaatcagccatagtttttagcgtgtggaattaaagctggctttgcgtgtat--- 297
Query: 1019 atgtctaatgccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatact 1077
||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 298 -------atgccaatccagtcgtcagctttggaaatgaagcgtgccattgattatatact 350
Query: 1078 gaaatgagttgatcagtgcaattctttgacatctaactatttattattatatgagatggg 1137
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaaatgagttgatcagtgtaattctttgacatctaactatttattattatatgagatggg 410
Query: 1138 aggaactgatg--gagaataaatgctgctgtagatttgtagaa 1178
||||||||| | |||||||| ||||| |||||||||||||||
Sbjct: 411 aggaactgagggagagaataagtgctgttgtagatttgtagaa 453
Score = 167 bits (84), Expect = 3e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 471 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 530
Query: 1258 tactgtttgagacgaggacattatgtatacta 1289
||||||||||||||||||||||||||||||||
Sbjct: 531 tactgtttgagacgaggacattatgtatacta 562
>gb|CN127957.1|CN127957 RHOH1_26_D06.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_26_D06_A002 3', mRNA sequence
Length = 608
Score = 617 bits (311), Expect = e-174
Identities = 448/490 (91%), Gaps = 17/490 (3%)
Strand = Plus / Plus
Query: 696 aattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtgga 755
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 aattattgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtaga 60
Query: 756 aaaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtga 815
||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 61 gaaggccacagaaatttggaacatcatctcacatggtggttacttatatgtatgcggtga 120
Query: 816 tgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcaggg 875
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 tgccaagggaatggctagagacgtacacagaatgcttcatacaatagtccaagagcaggg 180
Query: 876 atctttggataactccaaaaccgagagctatgtaaa--gagcctgcagatggaaggaagg 933
||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||
Sbjct: 181 atctttggatagctccaaaaccgagagctatgtaaannnngactgcagatggaaggcagg 240
Query: 934 tacctccgtgatgtatggtgacacatcacctcaaataagccatagc-tctagcgtgtgga 992
|||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||
Sbjct: 241 tacctccgtgatgtatggtgacacatcacccccaatcagccatagcttctagcgtgtgga 300
Query: 993 agtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtcagctttgg-a 1051
| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |
Sbjct: 301 attaaagctggctttgcgtgtat----------atgccaatccagtcgtcagctttggaa 350
Query: 1052 atgaagcgtgccattgatgatatactgaaatgagt-tgatcagtgcaattctttgacatc 1110
|||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||
Sbjct: 351 atgaagcgtgccattgattatatactgaaaagagtgtgatcagtgtaattctttgacatc 410
Query: 1111 taactatttattattatatgagatgggaggaactgatg--gagaataaatgctgctgtag 1168
|||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct: 411 taactatttattattatatgagatgggaggaactgagggagagaataagtgctgttgtag 470
Query: 1169 atttgtagaa 1178
||||||||||
Sbjct: 471 atttgtagaa 480
Score = 167 bits (84), Expect = 3e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 498 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 557
Query: 1258 tactgtttgagacgaggacattatgtatacta 1289
||||||||||||||||||||||||||||||||
Sbjct: 558 tactgtttgagacgaggacattatgtatacta 589
>gb|BF586827.1|BF586827 FM1_30_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 469
Score = 553 bits (279), Expect = e-155
Identities = 372/402 (92%), Gaps = 12/402 (2%)
Strand = Plus / Plus
Query: 779 tcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatggctagagatg 838
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 1 tcatctcacatggtggttacttatatgtatgcggtgatgccaagggaatggctagagacg 60
Query: 839 tacacaaaatgcttcatacaatagtccaagagcagggatctttggataactccaaaaccg 898
|||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 tacacagaatgcttcatccaatagtccaagagcagggatctttggatagctccaaaaccg 120
Query: 899 agagctatgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacaca 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 agagctatgtaaagagcctgcagatggaaggcaggtacctccgtgatgtatggtgacaca 180
Query: 959 tcacctcaaataagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtatga 1017
||||| | ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcacccccaatcagccatagcttctagcgtgtggaagtaaagctggctttgcgtgtat-- 238
Query: 1018 catgtctaatgccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatac 1076
||||||| ||| ||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 239 --------atgccaatccagtcgtcagctttggaaatgaatcgtgccattgattatatac 290
Query: 1077 tgaaatgagttgatcagtgcaattctttgacatctaactatttattattatatgagatgg 1136
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgaaatgagttgatcagtgtaattctttgacatctaactatttattattatatgagatgg 350
Query: 1137 gaggaactgatggagaataaatgctgctgtagatttgtagaa 1178
|||||||||| ||||||||| ||||| |||||||||||||||
Sbjct: 351 gaggaactgagggagaataagtgctgttgtagatttgtagaa 392
Score = 97.6 bits (49), Expect = 3e-018
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggaca 1250
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 409 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggaca 461
>gb|BG322495.1|BG322495 EM1_28_F10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 575
Score = 539 bits (272), Expect = e-151
Identities = 299/308 (97%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 gtaccttgcggactgcgcttctacgatacgctgatctactcaatccaccgaagaaggctg 327
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 328 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttagattct 387
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 388 tggcttctcccgctggaaaggatgagtactctcaatggataactgctagtcagaggagcc 447
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcag 259
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 448 ttattgaagttatggctgcattcccttcagctaagccaccactgggagtgttttttgcag 507
Query: 260 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctc 319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 508 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaatgatggctc 567
Query: 320 cctccaga 327
||||||||
Sbjct: 568 cctccaga 575
>gb|CF071577.1|CF071577 FE1_17_F01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_17_F01_A002 3', mRNA sequence
Length = 526
Score = 533 bits (269), Expect = e-149
Identities = 365/395 (92%), Gaps = 14/395 (3%)
Strand = Plus / Plus
Query: 788 atggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaa 847
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 1 atggtggttacttatatgtatgcggtgatgccaagggaatggctagagacgtacacagaa 60
Query: 848 tgcttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatg 907
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 tgcttcatacaatagtccaagagcagggatctttggatagctccaaaaccgagagctatg 120
Query: 908 taaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacatcacctcaa 967
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct: 121 taaagagcctgcagatggaaggcaggtacctccgtgatgtatggtgacacatcaccccca 180
Query: 968 ataagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaa 1026
|| ||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct: 181 atcagccatagcttctagcgtgtggaattaaagctggctttgcgtgtat----------a 230
Query: 1027 tgccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatactgaaatgag 1085
|||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 231 tgccaatccagtcgtcagctttggaaatgaagcgtgccattgattatatactgaaatgag 290
Query: 1086 ttgatcagtgcaattctttgacatctaactatttattattatatgagatgggaggaactg 1145
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttgatcagtgtaattctttgacatctaactatttattattatatgagatgggaggaactg 350
Query: 1146 atg--gagaataaatgctgctgtagatttgtagaa 1178
| | |||||||| ||||| |||||||||||||||
Sbjct: 351 agggagagaataagtgctgttgtagatttgtagaa 385
Score = 174 bits (88), Expect = 1e-041
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 403 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacattatgta 462
Query: 1258 tactgtttgagacgaggacattatgtatacta 1289
||||||||||||||||||||||||||||||||
Sbjct: 463 tactgtttgagacgaggacattatgtatacta 494
>gb|BG322487.1|BG322487 EM1_28_E10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 513 bits (259), Expect = e-143
Identities = 283/291 (97%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 gtaccttgcggactgcgcttctacgatacgctgatctactcaatccaccgaagaaggctg 327
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 328 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttagattct 387
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 388 tggcttctcccgctggaaaggatgagtactctcaatggataactgctagtcagaggagcc 447
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcag 259
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 448 ttattgaagttatggctgcattcccttcagctaagccaccactgggagtgttttttgcag 507
Query: 260 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaa 310
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaa 558
>gb|BG462757.1|BG462757 EM1_45_B11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 325
Score = 490 bits (247), Expect = e-136
Identities = 277/287 (96%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 34 gtaccttgcggactgcgcttgtacgatacgctgatctactcaatccaccgaagaaggctg 93
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 94 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttagattct 153
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct: 154 tggcttctcccgctggaaaggatgagtactctcaatggataactgctagtcataggagcc 213
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcag 259
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 214 ttattgaagttatggctgcattcccttcagctaagccaccactgggagtgttttttgcag 273
Query: 260 caatagctcctcgtctgcaaccacgatactactcaatttcatcatct 306
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 caatagctcctcgtctgcaaccacgatactactcaatttcatcatct 320
>gb|CD423964.1|CD423964 SA1_2_G06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_2_G06_A002 5', mRNA sequence
Length = 608
Score = 466 bits (235), Expect = e-129
Identities = 281/295 (95%), Gaps = 1/295 (0%)
Strand = Plus / Minus
Query: 721 ccaacgaaagaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatc 780
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 608 ccaacgaaagaatatgtgcagcataagatggtagagaaggccacagaaatttggaacatc 549
Query: 781 atctcaaatggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgta 840
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 548 atctcacatggtggttacttatatgtatgcggtgatgccaagggaatggctagagacgta 489
Query: 841 cacaaaatgcttcatacaatagtccaagagcagggatctttggataactccaaaaccgag 900
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 488 cacagaatgcttcatacaatagtccaagagcagggatctttggatagctccaaaaccgag 429
Query: 901 agctatgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacatc 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 428 agctatgtaaagagcctgcagatggaaggcaggtacctccgtgatgtatggtgacacatc 369
Query: 961 acctcaaataagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgta 1014
||| | ||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 368 acccccaatcagccatagcttctagcgtgtggaattaaagctggctttgcgtgta 314
Score = 216 bits (109), Expect = 4e-054
Identities = 146/156 (93%), Gaps = 3/156 (1%)
Strand = Plus / Minus
Query: 1026 atgccaacccaatcgtcagctttggaa-tgaagcgtgccattgatgatatactgaaatga 1084
||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 312 atgccaatccagtcgtcagctttggaaatgaagcgtgccattgattatatactgaaatga 253
Query: 1085 gttgatcagtgcaattctttgacatctaactatttattattatatgagatgggaggaact 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gttgatcagtgtaattctttgacatctaactatttattattatatgagatgggaggaact 193
Query: 1145 gatg--gagaataaatgctgctgtagatttgtagaa 1178
|| | |||||||| ||||| |||||||||||||||
Sbjct: 192 gagggagagaataagtgctgttgtagatttgtagaa 157
Score = 153 bits (77), Expect = 5e-035
Identities = 90/93 (96%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 139 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 80
Query: 1258 tactgtttgagacgagga-cattatgtatacta 1289
|||||||||||||||||| ||||||||||||||
Sbjct: 79 tactgtttgagacgaggaccattatgtatacta 47
>gb|BG557042.1|BG557042 EM1_41_H02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 432
Score = 444 bits (224), Expect = e-123
Identities = 314/342 (91%), Gaps = 14/342 (4%)
Strand = Plus / Plus
Query: 841 cacaaaatgcttcatacaatagtccaagagcagggatctttggataactccaaaaccgag 900
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 cacagaatgcttcatacaatagtccaagagcagggatctttggatagctccaaaaccgag 60
Query: 901 agctatgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacatc 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 agctatgtaaagagcctgcagatggaaggcaggtacctccgtgatgtatggtgacacatc 120
Query: 961 acctcaaataagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtatgaca 1019
||| | ||| ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 121 acccccaatcagccatagcttctagcgtgtggaattaaagctggctttgcgtgtat---- 176
Query: 1020 tgtctaatgccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatactg 1078
||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 177 ------atgccaatccagtcgtcagctttggaaatgaagcgtgccattgattatatactg 230
Query: 1079 aaatgagttgatcagtgcaattctttgacatctaactatttattattatatgagatggga 1138
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aaatgagttgatcagtgtaattctttgacatctaactatttattattatatgagatggga 290
Query: 1139 ggaactgatg--gagaataaatgctgctgtagatttgtagaa 1178
|||||||| | |||||||| ||||| |||||||||||||||
Sbjct: 291 ggaactgagggagagaataagtgctgttgtagatttgtagaa 332
Score = 135 bits (68), Expect = 1e-029
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 350 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 409
Query: 1258 tactgtttgagacgaggacattat 1281
|| |||||||||||||||||||||
Sbjct: 410 ta-tgtttgagacgaggacattat 432
Score = 44.1 bits (22), Expect = 0.033
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1257 atactgtttgagacgaggacattatgtata 1286
|||| |||||||| ||||||||||||||||
Sbjct: 382 atacagtttgagatgaggacattatgtata 411
>gb|BG947726.1|BG947726 IP1_8_D03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 452
Score = 426 bits (215), Expect = e-117
Identities = 305/333 (91%), Gaps = 14/333 (4%)
Strand = Plus / Plus
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cttcatacaatagtccaagagcagggatctttggatagctccaaaaccgagagctatgta 60
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacatcacctcaaat 969
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct: 61 aagagcctgcagatggaaggcaggtacctccgtgatgtatggtgacacatcacccccaat 120
Query: 970 aagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatg 1028
||||||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct: 121 cagccatagcttctagcgtgtggaattaaagctggctttgcgtgtat----------atg 170
Query: 1029 ccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatactgaaatgagtt 1087
|||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 171 ccaatccagtcgtcagctttggaaatgaagcgtgccattgattatatactgaaatgagtt 230
Query: 1088 gatcagtgcaattctttgacatctaactatttattattatatgagatgggaggaactgat 1147
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 231 gatcagtgtaattctttgacatgtaactatttattattatatgagatgggaggaactgag 290
Query: 1148 g--gagaataaatgctgctgtagatttgtagaa 1178
| |||||||| ||||| |||||||||||||||
Sbjct: 291 ggagagaataagtgctgttgtagatttgtagaa 323
Score = 167 bits (84), Expect = 3e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 341 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 400
Query: 1258 tactgtttgagacgaggacattatgtatacta 1289
||||||||||||||||||||||||||||||||
Sbjct: 401 tactgtttgagacgaggacattatgtatacta 432
>gb|BZ352162.1|BZ352162 hm86c05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hm86c05 5', DNA sequence
Length = 559
Score = 392 bits (198), Expect = e-107
Identities = 285/312 (91%), Gaps = 14/312 (4%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctgcagatggaaggc 170
Query: 931 aggtacctccgtgatgtatggtgacacatcacctcaaataagccatagc-tctagcgtgt 989
||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||
Sbjct: 171 aggtacctccgtgatgtatggtgacacatcacccccaatcagccatagcttctagcgtgt 230
Query: 990 ggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtcagctttg 1049
|||| ||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct: 231 ggaattaaagctggctttgcgtgtat----------atgccaatccagtcgtcagctttg 280
Query: 1050 g-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgcaattctttgaca 1108
| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 281 gaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgtaattctttgaca 340
Query: 1109 tctaactatttattattatatgagatgggaggaactgatg--gagaataaatgctgctgt 1166
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||
Sbjct: 341 tctaactatttattattatatgagatgggaggaactgagggagagaataagtgctgttgt 400
Query: 1167 agatttgtagaa 1178
||||||||||||
Sbjct: 401 agatttgtagaa 412
Score = 176 bits (89), Expect = 3e-042
Identities = 120/130 (92%), Gaps = 4/130 (3%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 430 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 489
Query: 1258 tactgtttgagacgaggacattatgtatac----tactctagaaggctaccgaaaccaaa 1313
|||||||||||||||||||||||||||||| |||| |||||||| ||| ||| ||||
Sbjct: 490 tactgtttgagacgaggacattatgtatactaagtactttagaaggccacctaaaacaaa 549
Query: 1314 ttttgcatct 1323
||||||||||
Sbjct: 550 ttttgcatct 559
Score = 58.0 bits (29), Expect = 2e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 846 aatgcttcatacaatagtccaagagcagg 874
|||||||||||||||||||||||||||||
Sbjct: 2 aatgcttcatacaatagtccaagagcagg 30
>gb|CW404501.1|CW404501 fsbb001f096k17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096k17, DNA
sequence
Length = 769
Score = 392 bits (198), Expect = e-107
Identities = 285/312 (91%), Gaps = 14/312 (4%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctgcagatggaaggc 465
Query: 931 aggtacctccgtgatgtatggtgacacatcacctcaaataagccatagc-tctagcgtgt 989
||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||
Sbjct: 466 aggtacctccgtgatgtatggtgacacatcacccccaatcagccatagcttctagcgtgt 525
Query: 990 ggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtcagctttg 1049
|||| ||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct: 526 ggaattaaagctggctttgcgtgtat----------atgccaatccagtcgtcagctttg 575
Query: 1050 g-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgcaattctttgaca 1108
| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 576 gaaatgaagcgtgccattgattatatactgaaatgagttgatcagtgtaattctttgaca 635
Query: 1109 tctaactatttattattatatgagatgggaggaactgatg--gagaataaatgctgctgt 1166
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||
Sbjct: 636 tctaactatttattattatatgagatgggaggaactgagggagagaataagtgctgttgt 695
Query: 1167 agatttgtagaa 1178
||||||||||||
Sbjct: 696 agatttgtagaa 707
Score = 192 bits (97), Expect = 6e-047
Identities = 112/117 (95%)
Strand = Plus / Plus
Query: 758 aggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatg 817
|||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 209 aggccacagaaatttggaacatcatctcacatggtggttacttatatgtatgcggtgatg 268
Query: 818 ccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 269 ccaagggaatggctagagacgtacacagaatgcttcatacaatagtccaagagcagg 325
Score = 165 bits (83), Expect = 1e-038
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 662 aaactttccttgaggagggggcgctttctgagctaattgttgcattctctcgggaagggc 721
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 1 aaactttccttgaggagggggctctttctgagctaattattgcattctctcgggaagggc 60
Query: 722 caacgaaagaatatgtgcagcataagatggt 752
|||||||||||||||||||||||||||||||
Sbjct: 61 caacgaaagaatatgtgcagcataagatggt 91
Score = 61.9 bits (31), Expect = 1e-007
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 1197 cccctgacaagtttgtagcc-aagggggtacatcatacagttt 1238
|||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 724 cccctgacaagtttgtagcccaaggggatacatcatacagttt 766
>gb|BM331600.1|BM331600 PIC1_58_F06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 301
Score = 375 bits (189), Expect = e-102
Identities = 279/308 (90%), Gaps = 12/308 (3%)
Strand = Plus / Plus
Query: 846 aatgcttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagcta 905
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 4 aatgcttcatacaatagtccaagagcagggatctttggatagctccaaagccgagagcta 63
Query: 906 tgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggtgacacatcacctc 965
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
Sbjct: 64 tgtaaagagcctgcagatggaaggcaggtccctccgtgatgtatggtgacacatcacccc 123
Query: 966 aaataagccatagc-tctagcgtgtggaagtaaagctggctttgcgtgtatgacatgtct 1024
||| ||||||||| | ||| |||||||| |||||||||||| | ||||||
Sbjct: 124 caatcagccatagcttttagggtgtggaattaaagctggcttggggtgtat--------- 174
Query: 1025 aatgccaacccaatcgtcagctttgg-aatgaagcgtgccattgatgatatactgaaatg 1083
||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 175 -atgccaatccagtcgtcagctttggaaatgaagcgtgccattgattatatactgaaatg 233
Query: 1084 agttgatcagtgcaattctttgacatctaactatttattattatatgagatgggaggaac 1143
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agttgatcagtgtaattctttgacatctaactatttattattatatgagatgggaggaac 293
Query: 1144 tgatggag 1151
||| ||||
Sbjct: 294 tgagggag 301
>gb|BG462835.1|BG462835 EM1_45_C01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 449
Score = 240 bits (121), Expect = 3e-061
Identities = 205/231 (88%), Gaps = 14/231 (6%)
Strand = Plus / Plus
Query: 952 tgacacatcacctcaaataagccatagct-ctagcgtgtggaagtaaagctggctttgcg 1010
|||||||||||| | ||| |||||||||| ||||||||||||| |||| |||||||||||
Sbjct: 1 tgacacatcacccccaatcagccatagcttctagcgtgtggaattaaacctggctttgcg 60
Query: 1011 tgtatgacatgtctaatgccaacccaatcgtcagctttggaa-tgaagcgtgccattgat 1069
||||| ||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct: 61 tgtat----------atgccaatccagtcgtcagctttggaaatgaagcgtgccattgat 110
Query: 1070 gatatactgaaatgagttgatcagtgcaattctttgacatctaactatttattattatat 1129
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 111 tatatactgaaatgagttgatcagtgtaattctttgacatctaactatttattattatat 170
Query: 1130 gagatgggaggaactgatg--gagaataaatgctgctgtagatttgtagaa 1178
||||||||||||||||| | |||||||| ||||| |||||||||||||||
Sbjct: 171 gagatgggaggaactgagggagagaataagtgctgttgtagatttgtagaa 221
Score = 184 bits (93), Expect = 1e-044
Identities = 124/134 (92%), Gaps = 4/134 (2%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 239 ccctgacaagtttgtagccaaggggatacatcatacagtttgagatgaggacattatgta 298
Query: 1258 tactgtttgagacgaggacattatgtatac----tactctagaaggctaccgaaaccaaa 1313
|||||||||||||||||||||||||||||| |||| |||||||| ||| ||| ||||
Sbjct: 299 tactgtttgagacgaggacattatgtatactaagtactttagaaggccacctaaaacaaa 358
Query: 1314 ttttgcatctgttt 1327
||||||||||||||
Sbjct: 359 ttttgcatctgttt 372
>gb|BG557556.1|BG557556 EM1_53_A01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 211
Score = 238 bits (120), Expect = 1e-060
Identities = 195/219 (89%), Gaps = 12/219 (5%)
Strand = Plus / Plus
Query: 925 gaaggaaggtacctccgtgatgtatggtgacacatcacctcaaataagccatagctc-ta 983
||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||| ||
Sbjct: 1 gaaggcaggtacctccgtgatgtatggtgacacatcacccccaatcagccatagcttgta 60
Query: 984 gcgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtca 1043
|||||||||| ||||||||||||||||||||| ||||||| ||| ||||||
Sbjct: 61 gcgtgtggaattaaagctggctttgcgtgtat----------atgccaatccagtcgtca 110
Query: 1044 gctttggaa-tgaagcgtgccattgatgatatactgaaatgagttgatcagtgcaattct 1102
||||||||| |||||||||||||||| |||| |||||||||||||||||||| ||||||
Sbjct: 111 gctttggaaatgaagcgtgccattgactatatcctgaaatgagttgatcagtgtaattct 170
Query: 1103 ttgacatctaactatttattattatatgagatgggagga 1141
|||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttgacatctaactatttattattatatgagatgggagga 209
>gb|BG463914.1|BG463914 EM1_52_D09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 123
Score = 196 bits (99), Expect = 4e-048
Identities = 118/123 (95%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 234 gccaccactgggagtgtttttc-gcagcaatagctcctcgtctgcaaccacgatactact 292
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaccactgggagtgtttttttgcagcaatagctcctcgtctgcaaccacgatactact 60
Query: 293 caatttcatcatctccaaagatggctccctccagaattcatgtaacatgtgcattagttt 352
|||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 caatttcatcatctccgatgatggctccctgcagaattcatgtaacatgtgcattagttt 120
Query: 353 atg 355
|||
Sbjct: 121 atg 123
>gb|BE595928.1|BE595928 PI1_50_A12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 169
Score = 149 bits (75), Expect = 8e-034
Identities = 153/178 (85%), Gaps = 12/178 (6%)
Strand = Plus / Plus
Query: 926 aaggaaggtacctccgtgatgtatggtgacacatcacctcaaataagccatagct-ctag 984
|||| |||||||||||||||||||||| ||||||||| | ||| |||||||||| ||||
Sbjct: 2 aaggcaggtacctccgtgatgtatggtagcacatcacccccaatcagccatagcttctag 61
Query: 985 cgtgtggaagtaaagctggctttgcgtgtatgacatgtctaatgccaacccaatcgtcag 1044
||||||||| ||||||||||||||||||||| ||||||| ||| |||||||
Sbjct: 62 cgtgtggaattaaagctggctttgcgtgtat----------atgccaatccagtcgtcag 111
Query: 1045 ctttgg-aatgaagcgtgccattgatgatatactgaaatgagttgatcagtgcaattc 1101
|||||| ||| ||||||||||||||| |||| |||||||||||||||||||| |||||
Sbjct: 112 ctttggaaatcaagcgtgccattgattatattctgaaatgagttgatcagtgtaattc 169
>gb|BM328279.1|BM328279 PIC1_23_B11.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 157
Score = 93.7 bits (47), Expect = 4e-017
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 1198 ccctgacaagtttgtagccaagggggtacatcatacagtttgagatgaggacactatgta 1257
||||||||||||||||||||||||| | | |||| |||||||||| |||| || ||||||
Sbjct: 83 ccctgacaagtttgtagccaaggggatccttcatccagtttgagaggaggccattatgta 142
Query: 1258 tactgtttgagacga 1272
|||||||||||||||
Sbjct: 143 tactgtttgagacga 157
Score = 60.0 bits (30), Expect = 6e-007
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 1116 atttattattatatgagatgggaggaactgatg--gagaataaatgctgctgtagatttg 1173
|||| ||||||||||| |||||||||||||| | |||||||| |||| ||||||||||
Sbjct: 1 attttttattatatgaaatgggaggaactgagggagagaataagggctgttgtagatttg 60
Query: 1174 tagaa 1178
|||||
Sbjct: 61 tagaa 65
>gb|BF421857.1|BF421857 FM1_11_C07.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 438
Score = 85.7 bits (43), Expect = 1e-014
Identities = 205/259 (79%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
|||||||||| || || ||| ||||||||||| || || || |||| |||||| || |||
Sbjct: 131 gatatgctgaccttctaaattcaccgaagaagacttctctggttgcattagctacttatg 190
Query: 104 catctgatccagctgaagctgaacgacttaggttcttggcctctcctgctggaaaggatg 163
| || ||||| ||||| ||||| || || || |||||||||||| | ||||| |||||||
Sbjct: 191 cttcagatccggctgaggctgaccgcctgagattcttggcctctgccgctgggaaggatg 250
Query: 164 agtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattcc 223
||||| |||||||| | || ||||||||||| || | ||||| ||||| | ||||
Sbjct: 251 agtatgctcaatgggttgtggcaagtcagaggagcctgttggaagtcatggcagagttcc 310
Query: 224 cttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccac 283
|||| || ||||| ||||| || || || || ||||| | || |||||||| ||||||
Sbjct: 311 cttcggcaaagcctccactaggtgtcttctttgcagctgttgcccctcgtcttcaaccaa 370
Query: 284 gatactactcaatttcatc 302
|||| || || ||||||||
Sbjct: 371 gatattattctatttcatc 389
>gb|BG463997.1|BG463997 EM1_52_D09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 116
Score = 73.8 bits (37), Expect = 4e-011
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 948 atggtgacacatcacctcaaataagccatagct-ctagcgtgtggaagtaaagctggctt 1006
|||||||||||||||| | ||| |||||||||| | || |||||||| ||||||||||||
Sbjct: 1 atggtgacacatcacccccaatcagccatagcttcaagggtgtggaattaaagctggctt 60
Query: 1007 tgcgtgtat 1015
|||||||||
Sbjct: 61 tgcgtgtat 69
>gb|CW148012.1|CW148012 104_542_11140191_116_35000_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140191, DNA
sequence
Length = 691
Score = 65.9 bits (33), Expect = 9e-009
Identities = 99/121 (81%)
Strand = Plus / Plus
Query: 439 tgcagctgggctcccatatttgtgaggcagtcaaatttcaagttacctgctgacccatcc 498
|||||||||||||| |||||||||||||| ||||| ||||| |||| ||||| || ||
Sbjct: 134 tgcagctgggctccgatatttgtgaggcaatcaaacttcaaactacccgctgatccttca 193
Query: 499 actccgattatcatgattggtcctgggacagggctggctccttttagaggcttcttgcag 558
|| || ||||||||||| |||||||| || || || ||||| | ||||||||||||
Sbjct: 194 gtgccaatcatcatgattggccctgggaccggtcttgcacctttccgcggcttcttgcag 253
Query: 559 g 559
|
Sbjct: 254 g 254
>gb|CW205904.1|CW205904 104_634_11187315_116_36951_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187315, DNA
sequence
Length = 655
Score = 65.9 bits (33), Expect = 9e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 328 attcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaagga 387
|||||||| ||||||||| |||| |||||||| | || || ||||| || ||| |||||
Sbjct: 321 attcatgtgacatgtgcactagtgtatgggccgacccctactggaagaattcacaaagga 380
Query: 388 gtttgttcaacatggatgaag 408
|||||||| ||||||||||||
Sbjct: 381 gtttgttctacatggatgaag 401
>gb|BG462759.1|BG462759 EM1_45_C01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 63.9 bits (32), Expect = 4e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatc 55
|||||||||||||||||||||||||||| |||||||
Sbjct: 429 gtaccttgcggactgcgcttctacgatacgctgatc 464
>gb|AW745723.1|AW745723 WS1_37_A07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 58.0 bits (29), Expect = 2e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 853 catacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaag 912
||||| || ||||| |||||||| ||| |||| ||||| || || || ||||| || |||
Sbjct: 340 cataccatcgtccaggagcaggggtctatggacaactcgaagacagaaagctacgtgaag 399
Query: 913 agcctgcagatggaagg 929
|||||||||||||||||
Sbjct: 400 agcctgcagatggaagg 416
>gb|BG241454.1|BG241454 RHIZ2_49_D05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 538
Score = 58.0 bits (29), Expect = 2e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 853 catacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaag 912
||||| || ||||| |||||||| ||| |||| ||||| || || || ||||| || |||
Sbjct: 74 cataccatcgtccaggagcaggggtctatggacaactcgaagacagaaagctacgtgaag 133
Query: 913 agcctgcagatggaagg 929
|||||||||||||||||
Sbjct: 134 agcctgcagatggaagg 150
>gb|BG557935.1|BG557935 EM1_39_D06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 402
Score = 58.0 bits (29), Expect = 2e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 853 catacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaag 912
||||| || ||||| |||||||| ||| |||| ||||| || || || ||||| || |||
Sbjct: 232 cataccatcgtccaggagcaggggtctatggacaactcgaagacagaaagctacgtgaag 291
Query: 913 agcctgcagatggaagg 929
|||||||||||||||||
Sbjct: 292 agcctgcagatggaagg 308
>gb|CD424878.1|CD424878 SA1_9_C06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_C06_A002 3', mRNA sequence
Length = 660
Score = 58.0 bits (29), Expect = 2e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 853 catacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaag 912
||||| || ||||| |||||||| ||| |||| ||||| || || || ||||| || |||
Sbjct: 238 cataccatcgtccaggagcaggggtctatggacaactcgaagacagaaagctacgtgaag 297
Query: 913 agcctgcagatggaagg 929
|||||||||||||||||
Sbjct: 298 agcctgcagatggaagg 314
>gb|CF071061.1|CF071061 FE1_15_D06.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_D06_A002 3', mRNA sequence
Length = 596
Score = 58.0 bits (29), Expect = 2e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 853 catacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaag 912
||||| || ||||| |||||||| ||| |||| ||||| || || || ||||| || |||
Sbjct: 131 cataccatcgtccaggagcaggggtctatggacaactcgaagacagaaagctacgtgaag 190
Query: 913 agcctgcagatggaagg 929
|||||||||||||||||
Sbjct: 191 agcctgcagatggaagg 207
>gb|CW205905.1|CW205905 104_634_11187315_148_36952_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187315, DNA
sequence
Length = 693
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 434 aagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 443 aagaatgtagctgggctccaatttttgttaggcagtcaaacttcaa 398
>gb|CW063640.1|CW063640 104_309_10522120_114_30136 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522120, DNA
sequence
Length = 657
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 870 gcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
|||||| ||| |||| ||||| || || || ||||| || ||||||||||||||||||||
Sbjct: 125 gcaggggtctatggacaactcgaagacagaaagctacgtgaagagcctgcagatggaagg 184
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 355,306
Number of Sequences: 832831
Number of extensions: 355306
Number of successful extensions: 95669
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95451
Number of HSP's gapped (non-prelim): 116
length of query: 1340
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1320
effective length of database: 474,703,049
effective search space: 626608024680
effective search space used: 626608024680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)