BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 613 e-173
gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient se... 605 e-171
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 589 e-166
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 533 e-150
gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bi... 351 6e-095
gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorgh... 311 5e-083
gb|CW082577.1|CW082577 104_424_10943847_114_32335_054 Sorgh... 309 2e-082
gb|CW082578.1|CW082578 104_424_10943847_116_32339_054 Sorgh... 46 0.005
gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorgh... 44 0.018
gb|CW034727.1|CW034727 104_265_10502729_115_30379 Sorghum m... 42 0.072
gb|CW169384.1|CW169384 104_579_11154645_148_36500_089 Sorgh... 42 0.072
gb|CW171643.1|CW171643 104_582_11155853_148_36530_023 Sorgh... 42 0.072
gb|CW184959.1|CW184959 104_602_11165812_116_36692_008 Sorgh... 42 0.072
gb|CW184960.1|CW184960 104_602_11165812_148_36691_008 Sorgh... 42 0.072
gb|CW345643.1|CW345643 104_848_11488604_116_36212_068 Sorgh... 42 0.072
gb|CW345644.1|CW345644 104_848_11488604_148_36211_068 Sorgh... 42 0.072
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 42 0.072
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 613 bits (309), Expect = e-173
Identities = 363/381 (95%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 177 ctaatgcctgtggttgggcatacggaatgaatttctttgatcttgattcttggaggaggg 236
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
|||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 237 agaagtgtactgagcagtaccattattggcagaatcagaacgagaaccggacattatgga 296
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| ||||
Sbjct: 297 agctaggaacgctacccccaggcttaatcactttctactccaccacaaaacctcttgaga 356
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 357 gatcttggcatgttcttggacttggatacaatccaagcatcagcatggaggagattagaa 416
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 417 atgctgctgttgtgcatttcaatggcaacatgaagccctggcttgacatcggtatgaacc 476
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 477 agttcaggcacctttggacaaagtacgtggactatgatgactcatatattcgtcaatgca 536
Query: 361 attttgcaccgccatagaagg 381
|||| ||||| ||||||||||
Sbjct: 537 atttcgcaccaccatagaagg 557
Score = 133 bits (67), Expect = 3e-029
Identities = 113/126 (89%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 430 atgccgcaagcacgttttctgtagagat--aaggagtttctagagtacaactgaagggac 487
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 659 atgccgcaagcacgttttctgtagagattcaaggagtttctcaagtacaactgaagggac 718
Query: 488 caccacaatcttttctagctcataatgtttgccatt-agttatgatcaaagtaatgtttg 546
||||||||| ||||||| ||||| ||| || |||| ||||||| | |||||||||||||
Sbjct: 719 caccacaattctttctagatcatattgtatgtcattaagttatggttaaagtaatgtttg 778
Query: 547 ccacat 552
||||||
Sbjct: 779 ccacat 784
>gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_F12_A002 5', mRNA sequence
Length = 692
Score = 605 bits (305), Expect = e-171
Identities = 362/381 (95%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 673 ctaatgcctgtggtggggcatacggaatgaatttctttgatcttgattcttggaggaggg 614
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
|||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 613 agaagtgtactgagcagtaccattattggcagaatcagaacgagaaccggacattatgga 554
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| ||||
Sbjct: 553 agctaggaacgctacccccaggcttaatcactttctactccaccacaaaacctcttgaga 494
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 493 aatcttggcatgttcttggacttggatacaatccaagcatcagcatggaggagattagaa 434
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 433 atgctgctgttgtgcatttcaatggcaatatgaagccctggcttgacatcggtatgaacc 374
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 373 agttcaggcacctttggacaaagtacgtggactatgatgactcatatattcgtcaatgca 314
Query: 361 attttgcaccgccatagaagg 381
|||| ||||| ||||||||||
Sbjct: 313 atttcgcaccaccatagaagg 293
Score = 143 bits (72), Expect = 3e-032
Identities = 140/160 (87%), Gaps = 7/160 (4%)
Strand = Plus / Minus
Query: 430 atgccgcaagcacgttttctgtagagat--aaggagtttctagagtacaactgaagggac 487
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 191 atgccgcaagcacgttttctgtagagattcaaggagtttctcaagtacaactgaagggac 132
Query: 488 caccacaatcttttctagctcataatgtttgccatta-gttatgatcaaagtaatgtttg 546
||||||||| ||||||| ||||| ||| || ||||| |||||| | |||||||||||||
Sbjct: 131 caccacaattctttctagatcatattgtatgtcattaagttatggttaaagtaatgtttg 72
Query: 547 ccacatgactgcatgagcattattgtcgttgtgtgtgtta 586
|||||| ||||||||||||| ||||||||| |||||
Sbjct: 71 ccacata----catgagcattattatcgttgtgtatgtta 36
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 589 bits (297), Expect = e-166
Identities = 347/364 (95%)
Strand = Plus / Plus
Query: 18 gcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgagcag 77
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 gcatacggaatgaatttctttgatcttgattcttggaggagggagaagtgtactgagcag 60
Query: 78 taccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctgccc 137
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct: 61 taccattattggcagaatcagaacgagaaccggacattatggaagctaggaacgctaccc 120
Query: 138 cctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttctt 197
| ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 121 ncaggcttaatcactttctactccaccacaaaacctcttgagaaatcttggcatgttctt 180
Query: 198 ggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcat 257
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggacttggatacaatccaagcatcagcatggaggagattagaaatgctgctgttgtgcat 240
Query: 258 ttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctttgg 317
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 241 ttcaatggcaacatgaagccctggcttgacatcggtatgaaccagttcaggcacctttgg 300
Query: 318 acaaagtatgtggactatgatgactcatatattcgtcaatgcaattttgcaccgccatag 377
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 301 acaaagtacgtggactatgatgactcatatattcgtcaatgcaatttcgcaccaccatag 360
Query: 378 aagg 381
||||
Sbjct: 361 aagg 364
Score = 127 bits (64), Expect = 2e-027
Identities = 138/160 (86%), Gaps = 7/160 (4%)
Strand = Plus / Plus
Query: 430 atgccgcaagcacgttttctgtagagat--aaggagtttctagagtacaactgaagggac 487
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 466 atgccgcaagcacgttttctgtagagattcaaggagtttctcaagtacaacagaagggac 525
Query: 488 caccacaatcttttctagctcataatgtttgccatta-gttatgatcaaagtaatgtttg 546
||||||||| ||||||| ||||| ||| || ||||| |||||| | |||||||| ||||
Sbjct: 526 caccacaattctttctagatcatattgtatgtcattaagttatggttaaagtaatatttg 585
Query: 547 ccacatgactgcatgagcattattgtcgttgtgtgtgtta 586
|||||| ||||||||||||| ||||||||| |||||
Sbjct: 586 ccacata----catgagcattattatcgttgtgtatgtta 621
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 533 bits (269), Expect = e-150
Identities = 311/325 (95%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 280 ctaatgcctgtggttgggcatacggaatgaatttctttgatcttgattcttggaggaggg 339
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
|||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 340 agaagtgtactgagcagtaccattattggcagaatcagaacgagaaccggacattatgga 399
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| ||||
Sbjct: 400 agctaggaacgctacccccaggcttaatcactttctactccaccacaaaacctcttgaga 459
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 460 aatcttggcatgttcttggacttggatacaatccaagcatcagcatggaggagattagaa 519
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 520 atgctgctgttgtgcatttcaatggcaacatgaagccctggcttgacatcggtatgaacc 579
Query: 301 agttcaggcacctttggacaaagta 325
|||||||||||||||||||||||||
Sbjct: 580 agttcaggcacctttggacaaagta 604
Score = 109 bits (55), Expect = 4e-022
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 605 tgtatatgccgaagtcagatatatttctgttcacgtggatccaagaagtaaagtgtctga 664
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 730 tgtatatgccgaagtcagatatattttagtttacgtggatccaagaagtaaagtgtctga 789
Query: 665 tgtattt 671
|||||||
Sbjct: 790 tgtattt 796
Score = 87.7 bits (44), Expect = 1e-015
Identities = 100/117 (85%), Gaps = 5/117 (4%)
Strand = Plus / Plus
Query: 471 agtacaactgaagggaccaccacaatcttttctagctcataatgtttgccatt-agttat 529
|||||||||||||||||||||||||| ||||||| ||||| ||| || |||| ||||||
Sbjct: 601 agtacaactgaagggaccaccacaattctttctagatcatattgtatgtcattaagttat 660
Query: 530 gatcaaagtaatgtttgccacatgactgcatgagcattattgtcgttgtgtgtgtta 586
| | |||||||||||||||||| | |||||||| |||| ||||||||| |||||
Sbjct: 661 ggttaaagtaatgtttgccaca----tacatgagcagtattatcgttgtgtatgtta 713
>gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_F08_A002 3', mRNA sequence
Length = 521
Score = 351 bits (177), Expect = 6e-095
Identities = 198/205 (96%)
Strand = Plus / Plus
Query: 177 gagaaatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagatt 236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2 gagaaatcttggcatgttcttggacttggatacaatccaagcatcagcatggaggagatt 61
Query: 237 agaaatgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatg 296
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 62 agaaatgctgctgttgtgcatttcaatgggaacatgaagccctggcttgacatcggtatg 121
Query: 297 aaccagttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaa 356
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 122 aaccagttcaggcacctttggacaaagtacgtggactatgatgactcatatattcgtcaa 181
Query: 357 tgcaattttgcaccgccatagaagg 381
|||||||| ||||| ||||||||||
Sbjct: 182 tgcaatttcgcaccaccatagaagg 206
Score = 143 bits (72), Expect = 3e-032
Identities = 140/160 (87%), Gaps = 7/160 (4%)
Strand = Plus / Plus
Query: 430 atgccgcaagcacgttttctgtagagat--aaggagtttctagagtacaactgaagggac 487
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 308 atgccgcaagcacgttttctgtagagattcaaggagtttctcaagtacaactgaagggac 367
Query: 488 caccacaatcttttctagctcataatgtttgccatta-gttatgatcaaagtaatgtttg 546
||||||||| ||||||| ||||| ||| || ||||| |||||| | |||||||||||||
Sbjct: 368 caccacaattctttctagatcatattgtatgtcattaagttatggttaaagtaatgtttg 427
Query: 547 ccacatgactgcatgagcattattgtcgttgtgtgtgtta 586
|||||| ||||||||||||| ||||||||| |||||
Sbjct: 428 ccacata----catgagcattattatcgttgtgtatgtta 463
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 605 tgtatatgccgaagtcagatatatttctgttcacgtggatcc 646
|||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 480 tgtatatgccgaagtcagatatatttttgtttacgtggatcc 521
>gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 643
Score = 311 bits (157), Expect = 5e-083
Identities = 175/181 (96%)
Strand = Plus / Plus
Query: 201 cttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttc 260
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttggatacaatccaagcatcagcatggaggagattagaaatgctgctgttgtgcatttc 60
Query: 261 aacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctttggaca 320
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatggcaacatgaagccctggcttgacatcggtatgaaccagttcaggcacctttggaca 120
Query: 321 aagtatgtggactatgatgactcatatattcgtcaatgcaattttgcaccgccatagaag 380
||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 121 aagtacgtggactatgatgactcatatattcgtcaatgcaatttcgcaccaccatagaag 180
Query: 381 g 381
|
Sbjct: 181 g 181
Score = 143 bits (72), Expect = 3e-032
Identities = 140/160 (87%), Gaps = 7/160 (4%)
Strand = Plus / Plus
Query: 430 atgccgcaagcacgttttctgtagagat--aaggagtttctagagtacaactgaagggac 487
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 283 atgccgcaagcacgttttctgtagagattcaaggagtttctcaagtacaactgaagggac 342
Query: 488 caccacaatcttttctagctcataatgtttgccatta-gttatgatcaaagtaatgtttg 546
||||||||| ||||||| ||||| ||| || ||||| |||||| | |||||||||||||
Sbjct: 343 caccacaattctttctagatcatattgtatgtcattaagttatggttaaagtaatgtttg 402
Query: 547 ccacatgactgcatgagcattattgtcgttgtgtgtgtta 586
|||||| ||||||||||||| ||||||||| |||||
Sbjct: 403 ccacata----catgagcattattatcgttgtgtatgtta 438
Score = 117 bits (59), Expect = 2e-024
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 605 tgtatatgccgaagtcagatatatttctgttcacgtggatccaagaagtaaagtgtctga 664
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 455 tgtatatgccgaagtcagatatatttttgtttacgtggatccaagaagtaaagtgtctga 514
Query: 665 tgtattt 671
|||||||
Sbjct: 515 tgtattt 521
>gb|CW082577.1|CW082577 104_424_10943847_114_32335_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 635
Score = 309 bits (156), Expect = 2e-082
Identities = 174/180 (96%)
Strand = Plus / Plus
Query: 202 ttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttca 261
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggatacaatccaagcatcagcatggaggagattagaaatgctgctgttgtgcatttca 60
Query: 262 acggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctttggacaa 321
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 atggcaacatgaagccctggcttgacatcggtatgaaccagttcaggcacctttggacaa 120
Query: 322 agtatgtggactatgatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 121 agtacgtggactatgatgactcatatattcgtcaatgcaatttcgcaccaccatagaagg 180
Score = 143 bits (72), Expect = 3e-032
Identities = 140/160 (87%), Gaps = 7/160 (4%)
Strand = Plus / Plus
Query: 430 atgccgcaagcacgttttctgtagagat--aaggagtttctagagtacaactgaagggac 487
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 282 atgccgcaagcacgttttctgtagagattcaaggagtttctcaagtacaactgaagggac 341
Query: 488 caccacaatcttttctagctcataatgtttgccatta-gttatgatcaaagtaatgtttg 546
||||||||| ||||||| ||||| ||| || ||||| |||||| | |||||||||||||
Sbjct: 342 caccacaattctttctagatcatattgtatgtcattaagttatggttaaagtaatgtttg 401
Query: 547 ccacatgactgcatgagcattattgtcgttgtgtgtgtta 586
|||||| ||||||||||||| ||||||||| |||||
Sbjct: 402 ccacata----catgagcattattatcgttgtgtatgtta 437
Score = 117 bits (59), Expect = 2e-024
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 605 tgtatatgccgaagtcagatatatttctgttcacgtggatccaagaagtaaagtgtctga 664
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 454 tgtatatgccgaagtcagatatatttttgtttacgtggatccaagaagtaaagtgtctga 513
Query: 665 tgtattt 671
|||||||
Sbjct: 514 tgtattt 520
>gb|CW082578.1|CW082578 104_424_10943847_116_32339_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 649 gaagtaaagtgtctgatgtattt 671
|||||||||||||||||||||||
Sbjct: 650 gaagtaaagtgtctgatgtattt 628
>gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466607, DNA
sequence
Length = 675
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 258 ttcaacggcaacatgaagccctggctggac 287
|||||||| ||||||||||| |||||||||
Sbjct: 126 ttcaacgggaacatgaagccatggctggac 97
>gb|CW034727.1|CW034727 104_265_10502729_115_30379 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502729, DNA
sequence
Length = 475
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 548 cacatgactgcatgagcattattgt 572
|||||||||||||||||||| ||||
Sbjct: 153 cacatgactgcatgagcatttttgt 177
>gb|CW169384.1|CW169384 104_579_11154645_148_36500_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154645, DNA
sequence
Length = 695
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 548 cacatgactgcatgagcattattgt 572
|||||||||||||||||||| ||||
Sbjct: 290 cacatgactgcatgagcatttttgt 266
>gb|CW171643.1|CW171643 104_582_11155853_148_36530_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155853, DNA
sequence
Length = 536
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 548 cacatgactgcatgagcattattgt 572
|||||||||||||||||||| ||||
Sbjct: 163 cacatgactgcatgagcatttttgt 187
>gb|CW184959.1|CW184959 104_602_11165812_116_36692_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165812, DNA
sequence
Length = 542
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 548 cacatgactgcatgagcattattgt 572
|||||||||||||||||||| ||||
Sbjct: 345 cacatgactgcatgagcatttttgt 369
>gb|CW184960.1|CW184960 104_602_11165812_148_36691_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165812, DNA
sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 548 cacatgactgcatgagcattattgt 572
|||||||||||||||||||| ||||
Sbjct: 557 cacatgactgcatgagcatttttgt 533
>gb|CW345643.1|CW345643 104_848_11488604_116_36212_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488604, DNA
sequence
Length = 650
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 548 cacatgactgcatgagcattattgt 572
|||||||||||||||||||| ||||
Sbjct: 359 cacatgactgcatgagcatttttgt 335
>gb|CW345644.1|CW345644 104_848_11488604_148_36211_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488604, DNA
sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 548 cacatgactgcatgagcattattgt 572
|||||||||||||||||||| ||||
Sbjct: 466 cacatgactgcatgagcatttttgt 490
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 255 catttcaacggcaacatgaagccctggct 283
|||| ||| ||||||||||||||||||||
Sbjct: 168 cattacaatggcaacatgaagccctggct 196
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,842
Number of Sequences: 832831
Number of extensions: 170842
Number of successful extensions: 45919
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45866
Number of HSP's gapped (non-prelim): 35
length of query: 746
length of database: 491,359,669
effective HSP length: 20
effective length of query: 726
effective length of database: 474,703,049
effective search space: 344634413574
effective search space used: 344634413574
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)