BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192909.2.3
(674 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW024899.1|CW024899 104_226_10487844_116_30523 Sorghum m... 468 e-130
gb|BE359069.1|BE359069 DG1_38_E03.g1_A002 Dark Grown 1 (DG1... 468 e-130
gb|BE361873.1|BE361873 DG1_82_G04.g1_A002 Dark Grown 1 (DG1... 468 e-130
gb|BE366272.1|BE366272 PI1_31_F09.g1_A002 Pathogen induced ... 468 e-130
gb|BF587732.1|BF587732 FM1_40_A09.g1_A003 Floral-Induced Me... 468 e-130
gb|CN127290.1|CN127290 RHOH1_22_D08.b1_A002 Acid- and alkal... 468 e-130
gb|CN127992.1|CN127992 RHOH1_26_G08.b1_A002 Acid- and alkal... 468 e-130
gb|CN145749.1|CN145749 WOUND1_35_B03.b1_A002 Wounded leaves... 468 e-130
gb|CX606254.1|CX606254 ANR1_2_B05.b1_A002 Anaerobic roots S... 468 e-130
gb|CX608853.1|CX608853 ANR1_9_D11.b1_A002 Anaerobic roots S... 468 e-130
gb|CX609517.1|CX609517 ANR1_13_E02.b1_A002 Anaerobic roots ... 468 e-130
gb|CX609664.1|CX609664 ANR1_14_B05.b1_A002 Anaerobic roots ... 468 e-130
gb|CX610824.1|CX610824 ANR1_21_B08.b1_A002 Anaerobic roots ... 468 e-130
gb|CX622842.1|CX622842 GABR1_66_G02.b1_A002 GA- or brassino... 468 e-130
gb|CX622961.1|CX622961 GABR1_67_A07.b1_A002 GA- or brassino... 468 e-130
gb|AF387790.1|AF387790 Sorghum bicolor O-methyltransferase ... 468 e-130
gb|AY217766.1| Sorghum bicolor caffeic acid O-methyltransfe... 468 e-130
gb|CN129737.1|CN129737 RHOH1_37_D01.b1_A002 Acid- and alkal... 460 e-128
gb|CN146843.1|CN146843 WOUND1_44_D11.b1_A002 Wounded leaves... 460 e-128
gb|CX607344.1|CX607344 ANR1_8_C01.b1_A002 Anaerobic roots S... 460 e-128
gb|CX611156.1|CX611156 ANR1_23_A11.b1_A002 Anaerobic roots ... 460 e-128
gb|BF421787.1|BF421787 FM1_11_E11.g1_A003 Floral-Induced Me... 458 e-127
gb|CX622296.1|CX622296 GABR1_63_D01.b2_A002 GA- or brassino... 458 e-127
gb|CN146710.1|CN146710 WOUND1_43_E12.b1_A002 Wounded leaves... 454 e-126
gb|AW565498.1|AW565498 LG1_344_B06.g1_A002 Light Grown 1 (L... 452 e-125
gb|CX611527.1|CX611527 ANR1_25_E03.b1_A002 Anaerobic roots ... 452 e-125
gb|BE355880.1|BE355880 DG1_11_B02.g1_A002 Dark Grown 1 (DG1... 446 e-123
gb|CN131323.1|CN131323 RHOH1_47_F05.b1_A002 Acid- and alkal... 444 e-123
gb|CX617355.1|CX617355 GABR1_33_F09.b1_A002 GA- or brassino... 436 e-120
gb|CX619821.1|CX619821 GABR1_48_C06.b1_A002 GA- or brassino... 436 e-120
gb|BE355644.1|BE355644 DG1_115_B04.g1_A002 Dark Grown 1 (DG... 434 e-120
gb|BF481207.1|BF481207 FM1_17_G11.g1_A003 Floral-Induced Me... 434 e-120
gb|BE356745.1|BE356745 DG1_12_B05.g1_A002 Dark Grown 1 (DG1... 400 e-110
gb|CX622494.1|CX622494 GABR1_64_G05.b2_A002 GA- or brassino... 396 e-108
gb|AW565376.1|AW565376 LG1_343_D10.g1_A002 Light Grown 1 (L... 392 e-107
gb|BG158756.1|BG158756 RHIZ2_44_H06.g1_A003 Rhizome2 (RHIZ2... 391 e-107
gb|BE355511.1|BE355511 DG1_114_A09.g1_A002 Dark Grown 1 (DG... 389 e-106
gb|BG050438.1|BG050438 FM1_69_B09.g1_A003 Floral-Induced Me... 383 e-104
gb|BI098547.1|BI098547 IP1_33_G12.g1_A002 Immature pannicle... 365 3e-099
gb|CX621961.1|CX621961 GABR1_61_E07.b2_A002 GA- or brassino... 353 1e-095
gb|BF588012.1|BF588012 FM1_35_F04.g1_A003 Floral-Induced Me... 329 2e-088
gb|BG101832.1|BG101832 RHIZ2_23_A03.g1_A003 Rhizome2 (RHIZ2... 319 2e-085
gb|BF587425.1|BF587425 FM1_36_C04.b1_A003 Floral-Induced Me... 317 7e-085
gb|BF588403.1|BF588403 FM1_36_C04.g1_A003 Floral-Induced Me... 317 7e-085
gb|CN128071.1|CN128071 RHOH1_26_G08.g1_A002 Acid- and alkal... 317 7e-085
gb|BG050723.1|BG050723 FM1_72_B12.g1_A003 Floral-Induced Me... 313 1e-083
gb|BG103472.1|BG103472 RHIZ2_37_A07.g1_A003 Rhizome2 (RHIZ2... 313 1e-083
gb|AW670997.1|AW670997 LG1_278_H02.b1_A002 Light Grown 1 (L... 309 2e-082
gb|BG048234.1|BG048234 OV1_15_E12.g1_A002 Ovary 1 (OV1) Sor... 309 2e-082
gb|BG052690.1|BG052690 RHIZ2_28_C07.g1_A003 Rhizome2 (RHIZ2... 309 2e-082
gb|BE359908.1|BE359908 DG1_58_C07.g2_A002 Dark Grown 1 (DG1... 301 4e-080
gb|CX619211.1|CX619211 GABR1_44_D06.b1_A002 GA- or brassino... 301 4e-080
gb|CF428774.1|CF428774 PH1_17_G11.g1_A002 Phosphorous-defic... 297 7e-079
gb|BI074247.1|BI074247 IP1_13_A12.g1_A002 Immature pannicle... 295 3e-078
gb|CX619237.1|CX619237 GABR1_44_G04.b1_A002 GA- or brassino... 281 4e-074
gb|CX614088.1|CX614088 GABR1_12_A12.b1_A002 GA- or brassino... 280 2e-073
gb|BG558079.1|BG558079 RHIZ2_66_D08.g1_A003 Rhizome2 (RHIZ2... 278 6e-073
gb|BG357589.1|BG357589 OV2_31_G08.g1_A002 Ovary 2 (OV2) Sor... 270 2e-070
gb|AW284829.1|AW284829 LG1_278_E11.g1_A002 Light Grown 1 (L... 266 2e-069
gb|BG103710.1|BG103710 RHIZ2_39_G01.g1_A003 Rhizome2 (RHIZ2... 266 2e-069
gb|BG465842.1|BG465842 RHIZ2_45_C03.g1_A003 Rhizome2 (RHIZ2... 266 2e-069
gb|BQ656082.1|BQ656082 pRC1048 Sorghum halepense rhizome cD... 266 2e-069
gb|BF588010.1|BF588010 FM1_35_F02.g1_A003 Floral-Induced Me... 260 1e-067
gb|BG487889.1|BG487889 RHIZ2_60_F03.g1_A003 Rhizome2 (RHIZ2... 260 1e-067
gb|BF585477.1|BF585477 FM1_23_A05.g1_A003 Floral-Induced Me... 258 6e-067
gb|CF431713.1|CF431713 NIT1_10_C11.b1_A002 Nitrogen-deficie... 258 6e-067
gb|BF587740.1|BF587740 FM1_40_B06.g1_A003 Floral-Induced Me... 254 9e-066
gb|BI099410.1|BI099410 IP1_41_G07.g1_A002 Immature pannicle... 250 1e-064
gb|BG488112.1|BG488112 RHIZ2_63_E05.g1_A003 Rhizome2 (RHIZ2... 248 6e-064
gb|BG559147.1|BG559147 RHIZ2_55_C06.g1_A003 Rhizome2 (RHIZ2... 246 2e-063
gb|BG241444.1|BG241444 RHIZ2_49_C05.g1_A003 Rhizome2 (RHIZ2... 242 3e-062
gb|BG559847.1|BG559847 RHIZ2_74_D02.g1_A003 Rhizome2 (RHIZ2... 242 3e-062
gb|CX622800.1|CX622800 GABR1_66_C01.b1_A002 GA- or brassino... 242 3e-062
gb|BG559966.1|BG559966 RHIZ2_75_H03.g1_A003 Rhizome2 (RHIZ2... 222 3e-056
gb|AW670995.1|AW670995 LG1_278_E11.b1_A002 Light Grown 1 (L... 220 1e-055
gb|BE601285.1|BE601285 PI1_91_B04.g1_A002 Pathogen induced ... 208 5e-052
gb|BG559838.1|BG559838 RHIZ2_74_C03.g1_A003 Rhizome2 (RHIZ2... 200 1e-049
gb|BI098834.1|BI098834 IP1_33_G12.b1_A002 Immature pannicle... 190 1e-046
gb|BG050885.1|BG050885 FM1_72_B12.b1_A003 Floral-Induced Me... 188 5e-046
gb|BI098546.1|BI098546 IP1_33_G11.g1_A002 Immature pannicle... 184 7e-045
gb|BG558931.1|BG558931 RHIZ2_52_E04.g1_A003 Rhizome2 (RHIZ2... 170 1e-040
gb|AW284847.1|AW284847 LG1_278_H02.g1_A002 Light Grown 1 (L... 163 3e-038
gb|BG052015.1|BG052015 RHIZ2_7_H04.g1_A003 Rhizome2 (RHIZ2)... 161 1e-037
gb|AW284944.1|AW284944 LG1_296_C04.g1_A002 Light Grown 1 (L... 157 2e-036
gb|CX620298.1|CX620298 GABR1_51_A12.b1_A002 GA- or brassino... 145 6e-033
gb|CN131393.1|CN131393 RHOH1_47_F05.g1_A002 Acid- and alkal... 143 2e-032
gb|DR831420.2|DR831420 MM25 Sorghum bicolor greenbug-respon... 141 9e-032
gb|BG559022.1|BG559022 RHIZ2_53_F02.g1_A003 Rhizome2 (RHIZ2... 133 2e-029
gb|BI098833.1|BI098833 IP1_33_G11.b1_A002 Immature pannicle... 125 6e-027
gb|BF421804.1|BF421804 FM1_11_D06.g1_A003 Floral-Induced Me... 98 1e-018
gb|CW024898.1|CW024898 104_226_10487844_114_30494 Sorghum m... 68 1e-009
gb|AW923712.1|AW923712 DG1_58_C07.g1_A002 Dark Grown 1 (DG1... 68 1e-009
gb|BE353092.1|BE353092 DG1_4_F10.g1_A002 Dark Grown 1 (DG1)... 68 1e-009
gb|BG053541.1|BG053541 RHIZ2_10_E06.g1_A003 Rhizome2 (RHIZ2... 62 7e-008
gb|BG559607.1|BG559607 RHIZ2_71_A05.g1_A003 Rhizome2 (RHIZ2... 58 1e-006
gb|CX620158.1|CX620158 GABR1_50_E04.b1_A002 GA- or brassino... 58 1e-006
gb|BG558544.1|BG558544 RHIZ2_57_C01.g1_A003 Rhizome2 (RHIZ2... 54 2e-005
gb|BG559826.1|BG559826 RHIZ2_74_B02.g1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG049858.1|BG049858 FM1_66_H02.g1_A003 Floral-Induced Me... 48 0.001
gb|BG558530.1|BG558530 RHIZ2_56_H12.g1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BG049859.1|BG049859 FM1_66_H03.g1_A003 Floral-Induced Me... 46 0.004
gb|CL152812.1|CL152812 104_336_10780252_114_31365_268 Sorgh... 44 0.016
gb|CL158780.1|CL158780 104_347_10803779_116_31378_371 Sorgh... 44 0.016
gb|CL161167.1|CL161167 104_352_10805530_116_31827_202 Sorgh... 44 0.016
gb|CW034639.1|CW034639 104_264_10502667_114_30358 Sorghum m... 44 0.016
gb|CW215154.1|CW215154 104_647_11194392_148_37163_090 Sorgh... 44 0.016
gb|CW259539.1|CW259539 104_725_11228481_116_35184_033 Sorgh... 44 0.016
gb|CW342001.1|CW342001 104_843_11486632_116_36164_054 Sorgh... 44 0.016
gb|CW349841.1|CW349841 fsbb001f010n23k0 Sorghum methylation... 44 0.016
gb|CW451793.1|CW451793 fsbb001f192a13f0 Sorghum methylation... 44 0.016
gb|AW923538.1|AW923538 DG1_52_F02.g1_A002 Dark Grown 1 (DG1... 44 0.016
gb|CW265165.1|CW265165 104_734_11231713_116_35257_009 Sorgh... 42 0.065
gb|BF586514.1|BF586514 FM1_29_B08.g1_A003 Floral-Induced Me... 42 0.065
gb|BZ342698.1|BZ342698 ic92a08.g1 WGS-SbicolorF (JM107 adap... 40 0.26
gb|BZ368058.1|BZ368058 id11b05.g1 WGS-SbicolorF (JM107 adap... 40 0.26
gb|CL161783.1|CL161783 104_353_10805958_114_31828_246 Sorgh... 40 0.26
gb|CW033044.1|CW033044 104_262_10501733_115_30362 Sorghum m... 40 0.26
gb|CW044427.1|CW044427 104_280_10508945_114_30268 Sorghum m... 40 0.26
gb|CW063049.1|CW063049 104_308_10521687_1_30092 Sorghum met... 40 0.26
gb|CW068346.1|CW068346 104_317_10525076_115_30116 Sorghum m... 40 0.26
gb|CW070073.1|CW070073 104_320_10526515_1_30089 Sorghum met... 40 0.26
gb|CW100810.1|CW100810 104_468_11004305_148_34392_073 Sorgh... 40 0.26
gb|CW126846.1|CW126846 104_507_11113114_116_34733_035 Sorgh... 40 0.26
gb|CW152280.1|CW152280 104_553_11144405_116_36323_023 Sorgh... 40 0.26
gb|CW251490.1|CW251490 104_714_11223958_116_35067_093 Sorgh... 40 0.26
gb|CW267723.1|CW267723 104_738_11400891_148_35299_014 Sorgh... 40 0.26
gb|CW275005.1|CW275005 104_748_11404729_148_35384_013 Sorgh... 40 0.26
gb|CW293417.1|CW293417 104_774_11414643_148_35600_016 Sorgh... 40 0.26
gb|CF490081.1|CF490081 POL1_62_H01.b1_A002 Pollen Sorghum b... 40 0.26
gb|CX613126.1|CX613126 GABR1_6_H11.b1_A002 GA- or brassinol... 40 0.26
>gb|CW024899.1|CW024899 104_226_10487844_116_30523 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10487844, DNA
sequence
Length = 706
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 548 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 489
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 488 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 429
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 428 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 369
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 368 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 309
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 249
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 248 tcatgaggatggcgtcgccggc 227
>gb|BE359069.1|BE359069 DG1_38_E03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 491
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 402 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 343
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 342 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 283
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 282 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 223
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 222 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 163
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 103
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 102 tcatgaggatggcgtcgccggc 81
>gb|BE361873.1|BE361873 DG1_82_G04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 371
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 370 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 311
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 310 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 251
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgc---cattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||||| | || |||||||||||||
Sbjct: 250 tggtcaccggcagcacgcactcgacgacgatcaccttgccggccttctccggcagcgcgt 191
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 131
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 130 tcatgaggatggcgtcgccggc 109
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 597 atgaagaaagcaaagtaagcaaaagtagatgcat 564
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 552 gtagcagcagcaaccagaagaagaagacggcggcga 517
>gb|BE366272.1|BE366272 PI1_31_F09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 679
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 377 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 318
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 317 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 258
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 257 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 198
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 197 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 138
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 78
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 77 tcatgaggatggcgtcgccggc 56
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 544 atgaagaaagcaaagtaagcaaaagtagatgcat 511
Score = 40.1 bits (20), Expect = 0.26
Identities = 42/48 (87%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 86 aatttagaatccacg-acatgcaagagctcgacaagacgtaccgaaga 132
||||||||||||| | |||||||| ||||| |||||||| ||| ||||
Sbjct: 664 aatttagaatccaagaacatgcaacagctcaacaagacgaaccaaaga 617
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 499 gtagcagcagcaaccagaagaagaagacggcggcga 464
>gb|BF587732.1|BF587732 FM1_40_A09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 676
Score = 468 bits (236), Expect = e-130
Identities = 295/314 (93%), Gaps = 3/314 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 314 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 255
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 254 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 195
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 194 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 135
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 134 tgctcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 75
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 15
Query: 650 tcatgaggatggcg 663
||||||||||||||
Sbjct: 14 tcatgaggatggcg 1
Score = 61.9 bits (31), Expect = 7e-008
Identities = 90/108 (83%), Gaps = 10/108 (9%)
Strand = Plus / Minus
Query: 28 agtataaccttgattgttattactcgcacatggc--agagacaattcgacgcagaagaag 85
|||||||||||||||||||||||| | ||||||| |||||||||||||| |
Sbjct: 658 agtataaccttgattgttattactggtacatggcgcagagacaattcgac-------agc 606
Query: 86 aatttagaatccacga-catgcaagagctcgacaagacgtaccgaaga 132
||||||||||||| || ||||||| |||||||||||||| ||| ||||
Sbjct: 605 aatttagaatccaagaacatgcaacagctcgacaagacgaaccaaaga 558
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 443 gtagcagcagcaaccagaagaagacgacggcggcga 408
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 488 atgaagaaagcaaagtaagcaaaagtagatgcat 455
>gb|CN127290.1|CN127290 RHOH1_22_D08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_D08_A002 3', mRNA sequence
Length = 796
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 426 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 367
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 366 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 307
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 306 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 247
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 246 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 187
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 127
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 126 tcatgaggatggcgtcgccggc 105
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 770 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 718
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 593 atgaagaaagcaaagtaagcaaaagtagatgcat 560
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 548 gtagcagcagcaaccagaagaagaagacggcggcga 513
>gb|CN127992.1|CN127992 RHOH1_26_G08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_G08_A002 3', mRNA sequence
Length = 766
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 426 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 367
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 366 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 307
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 306 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 247
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 246 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 187
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 127
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 126 tcatgaggatggcgtcgccggc 105
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/49 (91%), Gaps = 2/49 (4%)
Strand = Plus / Minus
Query: 29 gtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 766 gtataaccttgattgttattactggtacatggcgcagagacaattcgac 718
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 593 atgaagaaagcaaagtaagcaaaagtagatgcat 560
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 548 gtagcagcagcaaccagaagaagaagacggcggcga 513
>gb|CN145749.1|CN145749 WOUND1_35_B03.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_35_B03_A002 3', mRNA sequence
Length = 754
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 325
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 324 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 265
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 264 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 205
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 204 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 145
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 85
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 84 tcatgaggatggcgtcgccggc 63
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 728 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 676
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 551 atgaagaaagcaaagtaagcaaaagtagatgcat 518
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 506 gtagcagcagcaaccagaagaagaagacggcggcga 471
>gb|CX606254.1|CX606254 ANR1_2_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_B05_A002 3', mRNA sequence
Length = 746
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 376 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 317
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 316 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 257
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 256 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 197
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 196 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 137
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 77
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 76 tcatgaggatggcgtcgccggc 55
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 720 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 668
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 543 atgaagaaagcaaagtaagcaaaagtagatgcat 510
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 498 gtagcagcagcaaccagaagaagaagacggcggcga 463
>gb|CX608853.1|CX608853 ANR1_9_D11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_9_D11_A002 3', mRNA sequence
Length = 761
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 323
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 322 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 263
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 262 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 203
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 202 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 143
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 83
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 82 tcatgaggatggcgtcgccggc 61
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 726 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 674
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 549 atgaagaaagcaaagtaagcaaaagtagatgcat 516
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 504 gtagcagcagcaaccagaagaagaagacggcggcga 469
>gb|CX609517.1|CX609517 ANR1_13_E02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_13_E02_A002 3', mRNA sequence
Length = 801
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 323
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 322 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 263
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 262 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 203
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 202 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 143
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 83
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 82 tcatgaggatggcgtcgccggc 61
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 726 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 674
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 549 atgaagaaagcaaagtaagcaaaagtagatgcat 516
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 504 gtagcagcagcaaccagaagaagaagacggcggcga 469
>gb|CX609664.1|CX609664 ANR1_14_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_B05_A002 3', mRNA sequence
Length = 766
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 396 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 337
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 336 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 277
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 276 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 217
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 216 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 157
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 97
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 96 tcatgaggatggcgtcgccggc 75
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 740 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 688
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 563 atgaagaaagcaaagtaagcaaaagtagatgcat 530
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 518 gtagcagcagcaaccagaagaagaagacggcggcga 483
>gb|CX610824.1|CX610824 ANR1_21_B08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_21_B08_A002 3', mRNA sequence
Length = 780
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 410 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 351
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 350 agccagcggccttggcgagatcacggaactcccgctcgtaccgctccctgccgccggggt 291
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 290 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 231
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 230 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 171
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 111
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 110 tcatgaggatggcgtcgccggc 89
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/53 (90%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
|||||||||||||||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 754 gtaagtataaccttgattgttactactggtacatggcgcagagacaattcgac 702
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 577 atgaagaaagcaaagtaagcaaaagtagatgcat 544
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 532 gtagcagcagcaaccagaagaagaagacggcggcga 497
>gb|CX622842.1|CX622842 GABR1_66_G02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_66_G02_A002 3', mRNA sequence
Length = 722
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 376 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 317
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 316 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 257
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 256 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 197
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 196 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 137
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 77
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 76 tcatgaggatggcgtcgccggc 55
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 720 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 668
Score = 42.1 bits (21), Expect = 0.065
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgca 214
|||||||||| ||| |||||||||||| |||||
Sbjct: 543 atgaagaaagcaaagtaagcaaaagtagatgca 511
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 498 gtagcagcagcaaccagaagaagaagacggcggcga 463
>gb|CX622961.1|CX622961 GABR1_67_A07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_67_A07_A002 3', mRNA sequence
Length = 655
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 322
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 321 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 262
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 261 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 202
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 201 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 142
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 82
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 81 tcatgaggatggcgtcgccggc 60
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 548 atgaagaaagcaaagtaagcaaaagtagatgcat 515
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 503 gtagcagcagcaaccagaagaagaagacggcggcga 468
>gb|AF387790.1|AF387790 Sorghum bicolor O-methyltransferase mRNA, complete cds
Length = 1458
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1196 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 1137
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 1136 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 1077
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 1076 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 1017
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 1016 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 957
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 897
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 896 tcatgaggatggcgtcgccggc 875
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 1363 atgaagaaagcaaagtaagcaaaagtagatgcat 1330
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 1318 gtagcagcagcaaccagaagaagaagacggcggcga 1283
>gb|AY217766.1| Sorghum bicolor caffeic acid O-methyltransferase gene, complete cds
Length = 3312
Score = 468 bits (236), Expect = e-130
Identities = 301/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2777 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 2718
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 2717 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 2658
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 2657 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 2598
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 2597 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 2538
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 2478
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 2477 tcatgaggatggcgtcgccggc 2456
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 3121 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 3069
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 2944 atgaagaaagcaaagtaagcaaaagtagatgcat 2911
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 2899 gtagcagcagcaaccagaagaagaagacggcggcga 2864
>gb|CN129737.1|CN129737 RHOH1_37_D01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_D01_A002 3', mRNA sequence
Length = 648
Score = 460 bits (232), Expect = e-128
Identities = 300/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 369
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 368 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 309
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 308 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 249
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 248 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 189
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 188 cgtagcagttcttgagcagcgtggcgcaatgcgcgtcgctccagtcgtggaggatccact 129
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 128 tcatgaggatggcgtcgccggc 107
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 595 atgaagaaagcaaagtaagcaaaagtagatgcat 562
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 550 gtagcagcagcaaccagaagaagaagacggcggcga 515
>gb|CN146843.1|CN146843 WOUND1_44_D11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_44_D11_A002 3', mRNA sequence
Length = 752
Score = 460 bits (232), Expect = e-128
Identities = 300/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 322
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 321 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 262
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 261 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 202
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 201 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 142
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 141 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcactccagtcgtggaggatccact 82
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 81 tcatgaggatggcgtcgccggc 60
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 548 atgaagaaagcaaagtaagcaaaagtagatgcat 515
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 503 gtagcagcagcaaccagaagaagaagacggcggcga 468
>gb|CX607344.1|CX607344 ANR1_8_C01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_8_C01_A002 3', mRNA sequence
Length = 751
Score = 460 bits (232), Expect = e-128
Identities = 300/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 322
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 321 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 262
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 261 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 202
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 201 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 142
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cgcagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 82
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 81 tcatgaggatggcgtcgccggc 60
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 725 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 673
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 548 atgaagaaagcaaagtaagcaaaagtagatgcat 515
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 503 gtagcagcagcaaccagaagaagaagacggcggcga 468
>gb|CX611156.1|CX611156 ANR1_23_A11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_23_A11_A002 3', mRNA sequence
Length = 745
Score = 460 bits (232), Expect = e-128
Identities = 300/322 (93%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 367 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 308
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||| ||
Sbjct: 307 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggagt 248
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 247 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 188
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 187 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 128
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 68
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 67 tcatgaggatggcgtcgccggc 46
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 711 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 659
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 534 atgaagaaagcaaagtaagcaaaagtagatgcat 501
>gb|BF421787.1|BF421787 FM1_11_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 646
Score = 458 bits (231), Expect = e-127
Identities = 290/309 (93%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 309 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 250
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 249 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 190
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 189 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 130
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 129 tgctcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 70
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 10
Query: 650 tcatgagga 658
|||||||||
Sbjct: 9 tcatgagga 1
Score = 52.0 bits (26), Expect = 7e-005
Identities = 77/94 (81%), Gaps = 10/94 (10%)
Strand = Plus / Minus
Query: 32 taaccttgattgttattactcgcacatg---gcagagacaattcgacgcagaagaagaat 88
|||||||||||||||||||| | ||||| |||||||||||||||| | |||
Sbjct: 646 taaccttgattgttattactggtacatgggcgcagagacaattcgac-------agcaat 594
Query: 89 ttagaatccacgacatgcaagagctcgacaagac 122
|||||||||| |||||||| |||||||||||||
Sbjct: 593 ttagaatccagaacatgcaacagctcgacaagac 560
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 438 gtagcagcagcaaccagaagaagacgacggcggcga 403
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 483 atgaagaaagcaaagtaagcaaaagtagatgcat 450
>gb|CX622296.1|CX622296 GABR1_63_D01.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_63_D01_A002 3', mRNA sequence
Length = 670
Score = 458 bits (231), Expect = e-127
Identities = 299/321 (93%), Gaps = 3/321 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 262
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 261 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 202
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 201 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 142
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 141 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 82
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 cgtaacagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 22
Query: 650 tcatgaggatggcgtcgccgg 670
|||||||||||||||||||||
Sbjct: 21 tcatgaggatggcgtcgccgg 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 665 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 613
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 488 atgaagaaagcaaagtaagcaaaagtagatgcat 455
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 443 gtagcagcagcaaccagaagaagaagacggcggcga 408
>gb|CN146710.1|CN146710 WOUND1_43_E12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_43_E12_A002 3', mRNA sequence
Length = 685
Score = 454 bits (229), Expect = e-126
Identities = 294/315 (93%), Gaps = 3/315 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 315 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 256
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 255 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 196
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 195 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 136
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 135 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 76
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 16
Query: 650 tcatgaggatggcgt 664
|||||||||||||||
Sbjct: 15 tcatgaggatggcgt 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 659 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 607
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 482 atgaagaaagcaaagtaagcaaaagtagatgcat 449
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 437 gtagcagcagcaaccagaagaagaagacggcggcga 402
>gb|AW565498.1|AW565498 LG1_344_B06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 452 bits (228), Expect = e-125
Identities = 299/322 (92%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 377 acttgatgaactcgatggcccaggcgttggcgtaaatgtaggtggccttgaacccagaga 318
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||| ||| ||||||||||||
Sbjct: 317 agccagcggccttggcgaggtcacggaactcccgctcgtaccgttccctgccgccggggt 258
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 257 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 198
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 197 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 138
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 78
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 77 tcatgaggatggcgtcgccggc 56
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 544 atgaagaaagcaaagtaagcaaaagtagatgcat 511
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 499 gtagcagcagcaaccagaagaagaagacggcggcga 464
>gb|CX611527.1|CX611527 ANR1_25_E03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_E03_A002 3', mRNA sequence
Length = 741
Score = 452 bits (228), Expect = e-125
Identities = 299/322 (92%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 362 acttgatgaactcgatggcccaggcgttggcgtaaatgtaggtggccttgaacccagaga 303
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 302 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 243
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 242 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 183
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 182 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 123
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 122 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggacccact 63
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 62 tcatgaggatggcgtcgccggc 41
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 706 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 654
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 529 atgaagaaagcaaagtaagcaaaagtagatgcat 496
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 484 gtagcagcagcaaccagaagaagaagacggcggcga 449
>gb|BE355880.1|BE355880 DG1_11_B02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 405
Score = 446 bits (225), Expect = e-123
Identities = 292/314 (92%), Gaps = 3/314 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 314 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 255
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 254 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 195
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 194 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 135
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 134 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 75
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 15
Query: 650 tcatgaggatggcg 663
|||||| |||||||
Sbjct: 14 tcatgangatggcg 1
>gb|CN131323.1|CN131323 RHOH1_47_F05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_47_F05_A002 3', mRNA sequence
Length = 702
Score = 444 bits (224), Expect = e-123
Identities = 298/322 (92%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 436 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 377
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 376 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 317
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| || || |
Sbjct: 316 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggggtcgg 257
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || ||||| |||||||
Sbjct: 256 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccgggagcgcgt 197
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cgtaacagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 137
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 136 tcatgaggatggcgtcgccggc 115
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 558 gtagcagcagcaaccagaagaagaagacggcggcga 523
>gb|CX617355.1|CX617355 GABR1_33_F09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_F09_A002 3', mRNA sequence
Length = 720
Score = 436 bits (220), Expect = e-120
Identities = 297/322 (92%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 346 acttgatgaactcgatggcccaggcgttggcgtaaatgtaggtggccttgaacccagaga 287
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 286 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 227
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 226 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 167
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 166 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 107
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 106 cgtaacagttcttgagcagcgtggcgcaatgcgcgtcgctccaatcgtggaggatccact 47
Query: 650 tcatgaggatggcgtcgccggc 671
||||||||||||||||||||||
Sbjct: 46 tcatgaggatggcgtcgccggc 25
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 690 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 638
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 468 gtagcagcagcaaccagaagaagaagacggcggcga 433
>gb|CX619821.1|CX619821 GABR1_48_C06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_48_C06_A002 3', mRNA sequence
Length = 676
Score = 436 bits (220), Expect = e-120
Identities = 285/306 (93%), Gaps = 3/306 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 306 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 247
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 246 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 187
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 186 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 127
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 126 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 67
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 7
Query: 650 tcatga 655
||||||
Sbjct: 6 tcatga 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 650 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 598
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 473 atgaagaaagcaaagtaagcaaaagtagatgcat 440
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 428 gtagcagcagcaaccagaagaagaagacggcggcga 393
>gb|BE355644.1|BE355644 DG1_115_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 563
Score = 434 bits (219), Expect = e-120
Identities = 284/305 (93%), Gaps = 3/305 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 305 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 246
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 245 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 186
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 185 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 126
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 125 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 66
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 6
Query: 650 tcatg 654
|||||
Sbjct: 5 tcatg 1
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 472 atgaagaaagcaaagtaagcaaaagtagatgcat 439
Score = 40.1 bits (20), Expect = 0.26
Identities = 42/48 (87%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 86 aatttagaatccacg-acatgcaagagctcgacaagacgtaccgaaga 132
||||||||||||| | |||||||| ||||| |||||||| ||| ||||
Sbjct: 550 aatttagaatccaagaacatgcaacagctcaacaagacgaaccaaaga 503
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 427 gtagcagcagcaaccagaagaagaagacggcggcga 392
>gb|BF481207.1|BF481207 FM1_17_G11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 597
Score = 434 bits (219), Expect = e-120
Identities = 278/297 (93%), Gaps = 3/297 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 297 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 238
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 237 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 178
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 177 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 118
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 117 tgctcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 58
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatcc 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatcc 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 426 gtagcagcagcaaccagaagaagacgacggcggcga 391
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 471 atgaagaaagcaaagtaagcaaaagtagatgcat 438
>gb|BE356745.1|BE356745 DG1_12_B05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 569
Score = 400 bits (202), Expect = e-110
Identities = 267/288 (92%), Gaps = 3/288 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 288 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 229
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 228 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 169
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 168 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 109
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 108 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 49
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 1
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 455 atgaagaaagcaaagtaagcaaaagtagatgcat 422
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 410 gtagcagcagcaaccagaagaagaagacggcggcga 375
>gb|CX622494.1|CX622494 GABR1_64_G05.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G05_A002 3', mRNA sequence
Length = 660
Score = 396 bits (200), Expect = e-108
Identities = 268/290 (92%), Gaps = 3/290 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 290 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 231
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 230 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 171
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 170 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 111
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 110 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 51
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtgg 639
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 cgtaacagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtgg 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 634 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 582
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 457 atgaagaaagcaaagtaagcaaaagtagatgcat 424
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 412 gtagcagcagcaaccagaagaagaagacggcggcga 377
>gb|AW565376.1|AW565376 LG1_343_D10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 392 bits (198), Expect = e-107
Identities = 263/284 (92%), Gaps = 3/284 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 284 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 225
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 224 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 165
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 164 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 105
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 104 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 45
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccag 633
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccag 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 628 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 576
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 451 atgaagaaagcaaagtaagcaaaagtagatgcat 418
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 406 gtagcagcagcaaccagaagaagaagacggcggcga 371
>gb|BG158756.1|BG158756 RHIZ2_44_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 619
Score = 391 bits (197), Expect = e-107
Identities = 256/275 (93%), Gaps = 3/275 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 275 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 216
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 215 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 156
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 155 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 96
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 95 tgctcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 36
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcg 624
|||||||||||||||||||||||||||||||||||
Sbjct: 35 cgtagcagttcttgagcagcgtggcgcagtgcgcg 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/43 (90%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 35 ccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 612 ccttgattgttattactggtacatggcgcagagacaattcgac 570
Score = 48.1 bits (24), Expect = 0.001
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 86 aatttagaatccacga-catgcaagagctcgacaagacgtaccgaaga 132
||||||||||||| || ||||||| |||||||||||||| ||| ||||
Sbjct: 566 aatttagaatccaagaacatgcaacagctcgacaagacgaaccaaaga 519
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 404 gtagcagcagcaaccagaagaagacgacggcggcga 369
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 449 atgaagaaagcaaagtaagcaaaagtagatgcat 416
>gb|BE355511.1|BE355511 DG1_114_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 641
Score = 389 bits (196), Expect = e-106
Identities = 266/289 (92%), Gaps = 3/289 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 289 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacgcagaga 230
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 229 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 170
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| ||||||||||||||||||||| || ||| || |
Sbjct: 169 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttgnggacggcgtcgg 110
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 109 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 50
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtg 638
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtg 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 633 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 581
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 456 atgaagaaagcaaagtaagcaaaagtagatgcat 423
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 411 gtagcagcagcaaccagaagaagaagacggcggcga 376
>gb|BG050438.1|BG050438 FM1_69_B09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 578
Score = 383 bits (193), Expect = e-104
Identities = 252/271 (92%), Gaps = 3/271 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 271 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 212
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 211 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 152
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 151 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 92
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 91 tgctcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 32
Query: 590 cgtagcagttcttgagcagcgtggcgcagtg 620
|||||||||||||||||||||||||||||||
Sbjct: 31 cgtagcagttcttgagcagcgtggcgcagtg 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 86 aatttagaatccacga-catgcaagagctcgacaagacgtaccgaaga 132
||||||||||||| || ||||||| |||||||||||||| ||| ||||
Sbjct: 562 aatttagaatccaagaacatgcaacagctcgacaagacgaaccaaaga 515
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 400 gtagcagcagcaaccagaagaagacgacggcggcga 365
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 445 atgaagaaagcaaagtaagcaaaagtagatgcat 412
>gb|BI098547.1|BI098547 IP1_33_G12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 649
Score = 365 bits (184), Expect = 3e-099
Identities = 249/270 (92%), Gaps = 3/270 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 270 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 211
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 210 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 151
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 150 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 91
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 90 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 31
Query: 590 cgtagcagttcttgagcagcgtggcgcagt 619
||||||||||||||||||||||||||||||
Sbjct: 30 cgtagcagttcttgagcagcgtggcgcagt 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 614 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 562
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 437 atgaagaaagcaaagtaagcaaaagtagatgcat 404
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 392 gtagcagcagcaaccagaagaagaagacggcggcga 357
>gb|CX621961.1|CX621961 GABR1_61_E07.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_E07_A002 3', mRNA sequence
Length = 647
Score = 353 bits (178), Expect = 1e-095
Identities = 252/276 (91%), Gaps = 3/276 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 276 acttgatgaactcgatggcccaggcgttggcgtaaatgtaggtggccttgaacccagaga 217
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 216 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 157
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 156 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 97
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 96 tggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 37
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgt 625
|||| ||||||||||||||||||||||| |||||||
Sbjct: 36 cgtatcagttcttgagcagcgtggcgcaatgcgcgt 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 25 gtaagtataaccttgattgttattactcgcacatg--gcagagacaattcgac 75
||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 620 gtaagtataaccttgattgttattactggtacatggcgcagagacaattcgac 568
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 443 atgaagaaagcaaagtaagcaaaagtagatgcat 410
Score = 40.1 bits (20), Expect = 0.26
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| ||||||||||||||| |||| ||||||
Sbjct: 398 gtagcagcagcaaccagaagaagaagacggcggcga 363
>gb|BF588012.1|BF588012 FM1_35_F04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 559
Score = 329 bits (166), Expect = 2e-088
Identities = 225/244 (92%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 244 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 185
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 184 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 125
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 124 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 65
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacctt---gccattttccggcagcgcgt 589
|| | |||||||||||||||||||||||||| ||||| ||| || |||||||||||||
Sbjct: 64 tgctcaccggcagcacgcactcgacgacgatcaccttgccgcccttctccggcagcgcgt 5
Query: 590 cgta 593
||||
Sbjct: 4 cgta 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 86 aatttagaatccacga-catgcaagagctcgacaagacgtaccgaaga 132
||||||||||||| || ||||||| |||||||||||||| ||| ||||
Sbjct: 535 aatttagaatccaagaacatgcaacagctcgacaagacgaaccaaaga 488
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 373 gtagcagcagcaaccagaagaagacgacggcggcga 338
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 418 atgaagaaagcaaagtaagcaaaagtaaatgcat 385
>gb|BG101832.1|BG101832 RHIZ2_23_A03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 590
Score = 319 bits (161), Expect = 2e-085
Identities = 205/220 (93%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 229 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 170
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 169 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 110
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct: 109 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttgnggacggcctccg 50
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgcc 572
|| | |||||||||||||||||||||||||| ||||||||
Sbjct: 49 tgctcaccggcagcacgcactcgacgacgatcaccttgcc 10
Score = 50.1 bits (25), Expect = 3e-004
Identities = 84/102 (82%), Gaps = 10/102 (9%)
Strand = Plus / Minus
Query: 34 accttgattgttattactcgcacatggc--agagacaattcgacgcagaagaagaattta 91
|||||||||||||||||| | ||||||| |||||||||||||| | ||||||
Sbjct: 567 accttgattgttattactggtacatggcgcagagacaattcgac-------agcaattta 515
Query: 92 gaatccacga-catgcaagagctcgacaagacgtaccgaaga 132
||||||| || ||||||| |||||||||||||| ||| ||||
Sbjct: 514 gaatccaagaacatgcaacagctcgacaagacgaaccaaaga 473
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 358 gtagcagcagcaaccagaagaagacgacggcggcga 323
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 403 atgaagaaagcaaagtaagcaaaagtagatgcat 370
>gb|BF587425.1|BF587425 FM1_36_C04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 421
Score = 317 bits (160), Expect = 7e-085
Identities = 202/216 (93%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 221 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 162
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 161 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 102
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 101 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 42
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacct 568
|| | |||||||||||||||||||||||||| ||||
Sbjct: 41 tgctcaccggcagcacgcactcgacgacgatcacct 6
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 350 gtagcagcagcaaccagaagaagacgacggcggcga 315
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 395 atgaagaaagcaaagtaagcaaaagtagatgcat 362
>gb|BF588403.1|BF588403 FM1_36_C04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 528
Score = 317 bits (160), Expect = 7e-085
Identities = 202/216 (93%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 221 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 162
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 161 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 102
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 101 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 42
Query: 533 tgttgaccggcagcacgcactcgacgacgatgacct 568
|| | |||||||||||||||||||||||||| ||||
Sbjct: 41 tgctcaccggcagcacgcactcgacgacgatcacct 6
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 350 gtagcagcagcaaccagaagaagacgacggcggcga 315
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 395 atgaagaaagcaaagtaagcaaaagtagatgcat 362
>gb|CN128071.1|CN128071 RHOH1_26_G08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_G08_A002 5', mRNA sequence
Length = 781
Score = 317 bits (160), Expect = 7e-085
Identities = 207/222 (93%), Gaps = 3/222 (1%)
Strand = Plus / Minus
Query: 453 ccgctccttgccgccggggttgtgcgcgagcatgatcatgtcgacgtggaacacgccctg 512
||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 781 ccgctccctgccgccggggttatgcgcgagcatgatcatgtcgacatggaacacgccctg 722
Query: 513 cgccttgggggtggcctccgtgttgaccggcagcacgcactcgacgacgatgaccttgcc 572
|||||||||| ||| || ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 721 cgccttggggacggcgtcggtggtcaccggcagcacgcactcgacgacgatcaccttgcc 662
Query: 573 a---ttttccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgct 629
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gcccttctccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgct 602
Query: 630 ccagtcgtggaggatccacttcatgaggatggcgtcgccggc 671
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccagtcgtggaggatccacttcatgaggatggcgtcgccggc 560
>gb|BG050723.1|BG050723 FM1_72_B12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 548
Score = 313 bits (158), Expect = 1e-083
Identities = 197/210 (93%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 210 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 151
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 150 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 91
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 90 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 31
Query: 533 tgttgaccggcagcacgcactcgacgacga 562
|| | |||||||||||||||||||||||||
Sbjct: 30 tgctcaccggcagcacgcactcgacgacga 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 339 gtagcagcagcaaccagaagaagacgacggcggcga 304
Score = 46.1 bits (23), Expect = 0.004
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 86 aatttagaatccacga-catgcaagagctcgacaagacg 123
||||||||||||| || ||||||| ||||||||||||||
Sbjct: 500 aatttagaatccaagaacatgcaacagctcgacaagacg 462
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 384 atgaagaaagcaaagtaagcaaaagtagatgcat 351
>gb|BG103472.1|BG103472 RHIZ2_37_A07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 572
Score = 313 bits (158), Expect = 1e-083
Identities = 197/210 (93%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 210 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 151
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 150 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 91
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 90 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 31
Query: 533 tgttgaccggcagcacgcactcgacgacga 562
|| | |||||||||||||||||||||||||
Sbjct: 30 tgctcaccggcagcacgcactcgacgacga 1
Score = 50.1 bits (25), Expect = 3e-004
Identities = 84/102 (82%), Gaps = 10/102 (9%)
Strand = Plus / Minus
Query: 34 accttgattgttattactcgcacatggc--agagacaattcgacgcagaagaagaattta 91
|||||||||||||||||| | ||||||| |||||||||||||| | ||||||
Sbjct: 548 accttgattgttattactggtacatggcgcagagacaattcgac-------agcaattta 496
Query: 92 gaatccacga-catgcaagagctcgacaagacgtaccgaaga 132
||||||| || ||||||| |||||||||||||| ||| ||||
Sbjct: 495 gaatccaagaacatgcaacagctcgacaagacgaaccaaaga 454
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 339 gtagcagcagcaaccagaagaagacgacggcggcga 304
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 384 atgaagaaagcaaagtaagcaaaagtagatgcat 351
>gb|AW670997.1|AW670997 LG1_278_H02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 436
Score = 309 bits (156), Expect = 2e-082
Identities = 200/214 (93%), Gaps = 3/214 (1%)
Strand = Plus / Minus
Query: 461 tgccgccggggttgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgg 520
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 435 tgccgccggggttatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttgg 376
Query: 521 gggtggcctccgtgttgaccggcagcacgcactcgacgacgatgaccttgcca---tttt 577
|| ||| || ||| | |||||||||||||||||||||||||| |||||||| || |
Sbjct: 375 ggacggcgtcggtggtcaccggcagcacgcactcgacgacgatcaccttgccgcccttct 316
Query: 578 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 256
Query: 638 ggaggatccacttcatgaggatggcgtcgccggc 671
||||||||||||||||||||||||||||||||||
Sbjct: 255 ggaggatccacttcatgaggatggcgtcgccggc 222
>gb|BG048234.1|BG048234 OV1_15_E12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 309 bits (156), Expect = 2e-082
Identities = 204/220 (92%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 286 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 227
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 226 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 167
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct: 166 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcgtcgg 107
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgcc 572
|| | |||||||||||||||||||||||||| ||||||||
Sbjct: 106 tggtcaccggcagcacgcactcgacgacgatcaccttgcc 67
>gb|BG052690.1|BG052690 RHIZ2_28_C07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 587
Score = 309 bits (156), Expect = 2e-082
Identities = 195/208 (93%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 208 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccagaga 149
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct: 148 agccagcggccttggcgaggtcacggaactcccgctcgtaccgctccctgccgccggggt 89
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 88 tatgcgcgagcatgatcatgtcgacatggaacacgccctgcgccttggggacggcctccg 29
Query: 533 tgttgaccggcagcacgcactcgacgac 560
|| | |||||||||||||||||||||||
Sbjct: 28 tgctcaccggcagcacgcactcgacgac 1
Score = 61.9 bits (31), Expect = 7e-008
Identities = 90/108 (83%), Gaps = 10/108 (9%)
Strand = Plus / Minus
Query: 28 agtataaccttgattgttattactcgcacatggc--agagacaattcgacgcagaagaag 85
|||||||||||||||||||||||| | ||||||| |||||||||||||| |
Sbjct: 552 agtataaccttgattgttattactggtacatggcgcagagacaattcgac-------agc 500
Query: 86 aatttagaatccacga-catgcaagagctcgacaagacgtaccgaaga 132
||||||||||||| || ||||||| |||||||||||||| ||| ||||
Sbjct: 499 aatttagaatccaagaacatgcaacagctcgacaagacgaaccaaaga 452
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 238 gtagcagc-gcaaccagaagaagacgacgacggcga 272
|||||||| |||||||||||||||||||| ||||||
Sbjct: 337 gtagcagcagcaaccagaagaagacgacggcggcga 302
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 182 atgaagaaagaaaattaagcaaaagtacatgcat 215
|||||||||| ||| |||||||||||| ||||||
Sbjct: 382 atgaagaaagcaaagtaagcaaaagtagatgcat 349
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 253,938
Number of Sequences: 832831
Number of extensions: 253938
Number of successful extensions: 80034
Number of sequences better than 0.5: 130
Number of HSP's better than 0.5 without gapping: 128
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 79311
Number of HSP's gapped (non-prelim): 593
length of query: 674
length of database: 491,359,669
effective HSP length: 19
effective length of query: 655
effective length of database: 475,535,880
effective search space: 311476001400
effective search space used: 311476001400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)