BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192890.2.1
(531 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF755788.1|CF755788 DSAF1_1_H02.b1_A011 Drought-stressed... 303 9e-081
gb|CF755867.1|CF755867 DSAF1_1_H02.g1_A011 Drought-stressed... 303 9e-081
gb|CF757512.1|CF757512 DSAF1_18_H07.g1_A011 Drought-stresse... 303 9e-081
gb|CW067448.1|CW067448 104_315_10524284_114_30124 Sorghum m... 159 3e-037
gb|CW218042.1|CW218042 104_651_11195975_148_37457_088 Sorgh... 159 3e-037
gb|CD232696.1|CD232696 SS1_1_B02.b1_A012 Salt-stressed seed... 159 3e-037
gb|CL151622.1|CL151622 104_334_10779388_116_31362_172 Sorgh... 46 0.003
>gb|CF755788.1|CF755788 DSAF1_1_H02.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_1_H02_A011 5', mRNA sequence
Length = 487
Score = 303 bits (153), Expect = 9e-081
Identities = 165/169 (97%)
Strand = Plus / Plus
Query: 65 gaccggagatggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcagg 124
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 28 gaccggagatggcggcgtcgtcgtcggtggagaagctcaaggccctctgggactcgcagg 87
Query: 125 tcaacgacgaggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttg 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 88 tcaacgacgaggagcagtgggcgctcaactataagctgctgaaggctgctggtctgtttg 147
Query: 185 cgggatccatcttcctgatgcggaacttcggtgatctgatggccattta 233
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 148 cgggatccatcttcctgatgcggaactttggtgatctgatggccattta 196
>gb|CF755867.1|CF755867 DSAF1_1_H02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_1_H02_A011 3', mRNA sequence
Length = 470
Score = 303 bits (153), Expect = 9e-081
Identities = 165/169 (97%)
Strand = Plus / Plus
Query: 65 gaccggagatggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcagg 124
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 28 gaccggagatggcggcgtcgtcgtcggtggagaagctcaaggccctctgggactcgcagg 87
Query: 125 tcaacgacgaggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttg 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 88 tcaacgacgaggagcagtgggcgctcaactataagctgctgaaggctgctggtctgtttg 147
Query: 185 cgggatccatcttcctgatgcggaacttcggtgatctgatggccattta 233
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 148 cgggatccatcttcctgatgcggaactttggtgatctgatggccattta 196
>gb|CF757512.1|CF757512 DSAF1_18_H07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_18_H07_A011 3', mRNA sequence
Length = 473
Score = 303 bits (153), Expect = 9e-081
Identities = 165/169 (97%)
Strand = Plus / Plus
Query: 65 gaccggagatggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcagg 124
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 28 gaccggagatggcggcgtcgtcgtcggtggagaagctcaaggccctctgggactcgcagg 87
Query: 125 tcaacgacgaggagcagtgggcgctcaattataagctgctgaaggctgctggtctgtttg 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 88 tcaacgacgaggagcagtgggcgctcaactataagctgctgaaggctgctggtctgtttg 147
Query: 185 cgggatccatcttcctgatgcggaacttcggtgatctgatggccattta 233
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 148 cgggatccatcttcctgatgcggaactttggtgatctgatggccattta 196
>gb|CW067448.1|CW067448 104_315_10524284_114_30124 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524284, DNA
sequence
Length = 683
Score = 159 bits (80), Expect = 3e-037
Identities = 86/88 (97%)
Strand = Plus / Minus
Query: 65 gaccggagatggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcagg 124
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 255 gaccggagatggcggcgtcgtcgtcggtggagaagctcaaggccctctgggactcgcagg 196
Query: 125 tcaacgacgaggagcagtgggcgctcaa 152
||||||||||||||||||||||||||||
Sbjct: 195 tcaacgacgaggagcagtgggcgctcaa 168
Score = 40.1 bits (20), Expect = 0.20
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 10 ccgaacatactagaagcgtaaccctaagtctcggaccccaaccc 53
||||||| ||| |||||| ||||||||| | |||||||||||||
Sbjct: 331 ccgaacacactggaagcgaaaccctaagcc-cggaccccaaccc 289
>gb|CW218042.1|CW218042 104_651_11195975_148_37457_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195975, DNA
sequence
Length = 691
Score = 159 bits (80), Expect = 3e-037
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 65 gaccggagatggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcagg 124
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 314 gaccggagatggcggcgtcgtcgtcggtggagaagctcaaggccctctgggactcgcagg 373
Query: 125 tcaacgacgaggagcagtgggcgctcaa 152
||||||||||||||||||||||||||||
Sbjct: 374 tcaacgacgaggagcagtgggcgctcaa 401
Score = 40.1 bits (20), Expect = 0.20
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 10 ccgaacatactagaagcgtaaccctaagtctcggaccccaaccc 53
||||||| ||| |||||| ||||||||| | |||||||||||||
Sbjct: 238 ccgaacacactggaagcgaaaccctaagcc-cggaccccaaccc 280
>gb|CD232696.1|CD232696 SS1_1_B02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_1_B02_A012 3', mRNA sequence
Length = 651
Score = 159 bits (80), Expect = 3e-037
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 65 gaccggagatggcggcgtcgtcggcggtggagaagctcaaggtcctctgggactcgcagg 124
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 285 gaccggagatggcggcgtcgtcgtcggtggagaagctcaaggccctctgggactcgcagg 344
Query: 125 tcaacgacgaggagcagtgggcgctcaa 152
||||||||||||||||||||||||||||
Sbjct: 345 tcaacgacgaggagcagtgggcgctcaa 372
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 ccgaacatactagaagcgtaaccctaagtctcggaccccaaccc 53
||||||| ||| |||||| |||||||| | |||||||||||||
Sbjct: 208 ccgaacacactggaagcgaaaccctaaagcccggaccccaaccc 251
>gb|CL151622.1|CL151622 104_334_10779388_116_31362_172 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779388, DNA
sequence
Length = 520
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 449 aataatttttgatttgatgggtt 471
|||||||||||||||||||||||
Sbjct: 46 aataatttttgatttgatgggtt 24
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,743
Number of Sequences: 832831
Number of extensions: 153743
Number of successful extensions: 46023
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46003
Number of HSP's gapped (non-prelim): 20
length of query: 531
length of database: 491,359,669
effective HSP length: 19
effective length of query: 512
effective length of database: 475,535,880
effective search space: 243474370560
effective search space used: 243474370560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)