BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192736.2.4
(838 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE918363.1|BE918363 OV1_2_F12.g1_A002 Ovary 1 (OV1) Sorg... 858 0.0
gb|BF704992.1|BF704992 RHIZ2_1_A09.g1_A003 Rhizome2 (RHIZ2)... 856 0.0
gb|BG048210.1|BG048210 OV1_15_B07.g1_A002 Ovary 1 (OV1) Sor... 795 0.0
gb|BG048592.1|BG048592 OV1_14_E11.b1_A002 Ovary 1 (OV1) Sor... 785 0.0
gb|BE918162.1|BE918162 OV1_2_F12.b1_A002 Ovary 1 (OV1) Sorg... 783 0.0
gb|BG048520.1|BG048520 OV1_14_E11.g2_A002 Ovary 1 (OV1) Sor... 773 0.0
gb|BG157960.1|BG157960 OV1_15_B07.b1_A002 Ovary 1 (OV1) Sor... 712 0.0
gb|BF705070.1|BF705070 RHIZ2_1_A09.b1_A003 Rhizome2 (RHIZ2)... 630 e-179
gb|BF480809.1|BF480809 FM1_14_B12.b1_A003 Floral-Induced Me... 595 e-168
gb|BG605764.1|BG605764 RHIZ2_81_B12.g1_A003 Rhizome2 (RHIZ2... 595 e-168
gb|CD429133.1|CD429133 ETH1_2_D09.g1_A002 Ethylene-treated ... 595 e-168
gb|CN127128.1|CN127128 RHOH1_21_E08.b1_A002 Acid- and alkal... 595 e-168
gb|CN127215.1|CN127215 RHOH1_21_E08.g3_A002 Acid- and alkal... 595 e-168
gb|CX606314.1|CX606314 ANR1_2_H01.b1_A002 Anaerobic roots S... 595 e-168
gb|CX606409.1|CX606409 ANR1_2_H01.g1_A002 Anaerobic roots S... 595 e-168
gb|CX611934.1|CX611934 ANR1_27_C05.g1_A002 Anaerobic roots ... 595 e-168
gb|AW747263.1|AW747263 WS1_67_D10.b1_A002 Water-stressed 1 ... 591 e-167
gb|CN138025.1|CN138025 OX1_61_F07.b1_A002 Oxidatively-stres... 587 e-166
gb|CF760749.1|CF760749 DSAF1_66_A03.b1_A011 Drought-stresse... 585 e-165
gb|BQ656086.1|BQ656086 pRC1054 Sorghum halepense rhizome cD... 523 e-147
gb|AW747350.1|AW747350 WS1_67_D10.g1_A002 Water-stressed 1 ... 515 e-144
gb|AI723862.1|AI723862 RHIZ1_28_E02.y1_A001 Rhizome1 (RHIZ1... 486 e-135
gb|BF480859.1|BF480859 FM1_14_B12.g1_A003 Floral-Induced Me... 486 e-135
gb|CD429012.1|CD429012 ETH1_2_D09.b1_A002 Ethylene-treated ... 482 e-134
gb|BG159321.1|BG159321 OV2_6_C08.g1_A002 Ovary 2 (OV2) Sorg... 476 e-132
gb|CF487412.1|CF487412 POL1_43_D07.g1_A002 Pollen Sorghum b... 474 e-132
gb|AW745997.1|AW745997 WS1_38_A06.g1_A002 Water-stressed 1 ... 462 e-128
gb|BF704648.1|BF704648 FM1_49_G06.b1_A003 Floral-Induced Me... 454 e-126
gb|BG241020.1|BG241020 OV1_37_C01.b1_A002 Ovary 1 (OV1) Sor... 448 e-124
gb|AW745886.1|AW745886 WS1_38_B06.b1_A002 Water-stressed 1 ... 428 e-118
gb|CF486548.1|CF486548 POL1_38_H01.b1_A002 Pollen Sorghum b... 426 e-117
gb|CW286922.1|CW286922 104_764_11411146_116_35514_033 Sorgh... 416 e-114
gb|BE593254.1|BE593254 WS1_99_E03.g1_A002 Water-stressed 1 ... 377 e-102
gb|BE593669.1|BE593669 WS1_99_E03.b1_A002 Water-stressed 1 ... 375 e-102
gb|CD220797.1|CD220797 CCC1_69_H10.g1_A007 Callus culture/c... 357 1e-096
gb|CW211015.1|CW211015 104_641_11190092_116_37009_070 Sorgh... 349 3e-094
gb|BG104076.1|BG104076 RHIZ2_40_C03.b1_A003 Rhizome2 (RHIZ2... 333 2e-089
gb|BG649651.1|BG649651 RHIZ2_81_B12.b1_A003 Rhizome2 (RHIZ2... 313 1e-083
gb|CD232565.1|CD232565 SS1_46_B08.b1_A012 Salt-stressed see... 313 1e-083
gb|CN138109.1|CN138109 OX1_61_F07.g1_A002 Oxidatively-stres... 299 2e-079
gb|CF758013.1|CF758013 DSAF1_26_B11.g1_A011 Drought-stresse... 270 2e-070
gb|CW286923.1|CW286923 104_764_11411146_148_35518_033 Sorgh... 258 7e-067
gb|CW082706.1|CW082706 104_425_10943960_114_32351_032 Sorgh... 256 3e-066
gb|CW082707.1|CW082707 104_425_10943960_114_32387_032 Sorgh... 256 3e-066
gb|CD220776.1|CD220776 CCC1_69_H10.b1_A007 Callus culture/c... 240 2e-061
gb|CW437848.1|CW437848 fsbb001f155c21k0 Sorghum methylation... 174 8e-042
gb|BG159577.1|BG159577 OV2_6_C08.b1_A002 Ovary 2 (OV2) Sorg... 172 3e-041
gb|CL155138.1|CL155138 104_340_10781897_116_31470_377 Sorgh... 165 8e-039
gb|BG103739.1|BG103739 RHIZ2_40_C03.g1_A003 Rhizome2 (RHIZ2... 161 1e-037
gb|CW211016.1|CW211016 104_641_11190092_148_37008_070 Sorgh... 147 2e-033
gb|AI724667.1|AI724667 RHIZ1_11_E04.y1_A001 Rhizome1 (RHIZ1... 133 3e-029
gb|CD207236.1|CD207236 HS1_62_G06.b1_A012 Heat-shocked seed... 131 1e-028
gb|CD232167.1|CD232167 SS1_38_E04.g1_A012 Salt-stressed see... 60 3e-007
gb|AW745957.1|AW745957 WS1_38_B06.g1_A002 Water-stressed 1 ... 54 2e-005
gb|CW114695.1|CW114695 104_489_11106129_148_34567_039 Sorgh... 40 0.32
gb|CW467761.1|CW467761 fsbb001f219j11k0 Sorghum methylation... 40 0.32
gb|BF657563.1|BF657563 OV2_23_G04.b1_A002 Ovary 2 (OV2) Sor... 40 0.32
gb|DN551955.1|DN551955 pSPR-RT-MR-H2_G09_S201 pSPR Sorghum ... 40 0.32
>gb|BE918363.1|BE918363 OV1_2_F12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 619
Score = 858 bits (433), Expect = 0.0
Identities = 530/562 (94%), Gaps = 4/562 (0%)
Strand = Plus / Plus
Query: 60 gaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccctt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 29 gaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcgggcgtt 88
Query: 120 ccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgacta 179
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 89 ccgcaagaaggggtacatcccgctcaccacctacctgcgcacctacaagatcggcgccta 148
Query: 180 cgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacgg 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacgg 208
Query: 240 ccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagca 299
||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 209 ccgcaccggacgcgtctggaacgtcaccaagcgcgccatcggtgtcgagatcaacaagca 268
Query: 300 ggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctc 359
|||||| || ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 269 ggttaatggccgcatcatcaggaagcgtatccatgtacgtgtggagcatgtgcagccctc 328
Query: 360 ccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgc 419
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccgatgcacagaggagttccgcttgaggaaagccaagaatgaccagctcaaggcggatgc 388
Query: 420 caaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggctt 479
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 389 caaggcccgtggtgaggtgatcagcaccaagaggcaacctgtgggacccaaacctggctt 448
Query: 480 catggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacga 539
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct: 449 catggttgagggtgctacgcttgagacagtcactcctattccttatgatgtggtcaatga 508
Query: 540 tctcaagggcggttactagagagaattcttgtaccttcagcagttcaaacgagctggc-- 597
||||||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||
Sbjct: 509 tctcaagggtggttactagagaggattcttgtaccttgagcagttcaagtgagctggcat 568
Query: 598 --aaacttatctgaatcttttt 617
| ||||||||||||||||||
Sbjct: 569 aaatacttatctgaatcttttt 590
>gb|BF704992.1|BF704992 RHIZ2_1_A09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 571
Score = 856 bits (432), Expect = 0.0
Identities = 504/528 (95%)
Strand = Plus / Plus
Query: 60 gaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccctt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 36 gaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcgggcgtt 95
Query: 120 ccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgacta 179
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 96 ccgcaagaaggggtacatcccgctcaccacctatctgcgcacctacaagatcggcgacta 155
Query: 180 cgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacgg 215
Query: 240 ccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagca 299
||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 216 ccgcaccggacgcgtctggaacgtcaccaagcgcgccatcggtgtcgagatcaacaagca 275
Query: 300 ggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctc 359
|||||| || ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 276 ggttaatggccgcatcatcaggaagcgtatccatgtacgtgtggagcatgtgcagccctc 335
Query: 360 ccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgc 419
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccgatgcacagaggagttccgcttgaggaaagccaagaatgaccagctcaaggcggatgc 395
Query: 420 caaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggctt 479
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 396 caaggcccgtggtgaggtgatcagtaccaagaggcaacctgtgggacccaaacctggctt 455
Query: 480 catggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacga 539
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 456 catggttgagggtgctacacttgagacagtcactcctattccttatgatgtggtcaatga 515
Query: 540 tctcaagggcggttactagagagaattcttgtaccttcagcagttcaa 587
||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 516 tctcaagggtggttattagagagaattcttgtaccttgagcagttcaa 563
>gb|BG048210.1|BG048210 OV1_15_B07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 633
Score = 795 bits (401), Expect = 0.0
Identities = 526/566 (92%), Gaps = 5/566 (0%)
Strand = Plus / Plus
Query: 95 cccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcccgctcaccacgtacc 154
|||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct: 1 cccgcgacctgttcgcgcgggcgttccgcaagaaggggtacatcccgctcaccacctacg 60
Query: 155 tgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaagg 214
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 61 tgcgcacctacaagatcggcgcctacgtcgacgtcaaggtgaacggcgccgtgcacaagg 120
Query: 215 gcatgccgcacaagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcg 274
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 gcatgccgcacaagttctaccacggccgcaccggacgcgtctggaacgtcaccaagcgcg 180
Query: 275 ccattggcgtcgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatg 334
|||| || ||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 181 ccatcggtgtcgagatcaacaagcaggttaatggccgcatcatcaggaagcgtatccatg 240
Query: 335 tccgcgtggagcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaagcca 394
| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 241 tacgtgtggagcatgtgcagccctcccgatgcacagaggagttccgcttgaggaaagcca 300
Query: 395 agaatgaccagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggc 454
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 301 agaatgaccagctcaaggcggatgccaaggcccgtggtgaggtgatcagcaccaagaggc 360
Query: 455 agcctgtgggacccaaacctggcttcatggtcgagggtgctacactcgagacagtcactc 514
| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 361 aacctgtgggacccaaacctggcttcatggttgagggtgctacgcttgagacagtcactc 420
Query: 515 ctattccttatgatgtggtcaacgatctcaagggcggttactagagagaattcttgtacc 574
|||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 421 ctattccttatgatgtggtcaatgatctcaagggtggttactagagaggattcttgtacc 480
Query: 575 ttcagcagttcaaacgagctggc----aaacttatctgaatcttttttgataattggcta 630
|| |||||||||| |||||||| | ||||||||||||| |||||||||| || ||
Sbjct: 481 ttgagcagttcaagtgagctggcataaatacttatctgaatc-tttttgataactgcgta 539
Query: 631 gttcttctgttctggtgttatgaacc 656
|||||| ||||| ||| |||||||||
Sbjct: 540 gttcttttgttcgggttttatgaacc 565
>gb|BG048592.1|BG048592 OV1_14_E11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 545
Score = 785 bits (396), Expect = 0.0
Identities = 487/517 (94%), Gaps = 4/517 (0%)
Strand = Plus / Plus
Query: 20 ccgccgtcgccgcccagccgcagtaaggaggaaggagcaggaagatgccggcggggcacg 79
|||||| |||||||||||| ||| |||||||| | || |||||||||||||||||||
Sbjct: 29 ccgccgccgccgcccagccacaggaaggaggaggaag----aagatgccggcggggcacg 84
Query: 80 ggctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcc 139
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 85 ggctgcggtcgcggacccgcgacctgttcgcgcgggcgttccgcaagaaggggtacatcc 144
Query: 140 cgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacg 199
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 145 cgctcaccacctacctgcgcacctacaagatcggcgcctacgtcgacgtcaaggtgaacg 204
Query: 200 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccgggagcgtctgga 259
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccggacgcgtctgga 264
Query: 260 acgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacggtcgcatcatca 319
||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 265 acgtcaccaagcgcgccatcggtgtcgagatcaacaagcaggttaatggccgcatcatca 324
Query: 320 ggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacagaggagttcc 379
||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 ggaagcgtatccatgtacgtgtggagcatgtgcagccctcccgatgcacagaggagttcc 384
Query: 380 gcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgcggtgaggtga 439
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 gcttgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgtggtgaggtga 444
Query: 440 tcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgagggtgctacac 499
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 445 tcagcaccaagaggcaacctgtgggacccaaacctggcttcatggttgagggtgctacgc 504
Query: 500 tcgagacagtcactcctattccttatgatgtggtcaa 536
| |||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgagacagtcactcctattccttatgatgtggtcaa 541
>gb|BE918162.1|BE918162 OV1_2_F12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 554
Score = 783 bits (395), Expect = 0.0
Identities = 496/528 (93%), Gaps = 5/528 (0%)
Strand = Plus / Plus
Query: 20 ccgccgtcgccgcccagccgcagtaaggaggaaggagcaggaagatgccggcggggcacg 79
|||||| |||||||||||| ||| |||||||| | || |||||||||||||||||||
Sbjct: 31 ccgccgccgccgcccagccacaggaaggaggaggaag----aagatgccggcggggcacg 86
Query: 80 ggctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcc 139
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 87 ggctgcggtcgcggacccgcgacctgttcgcgcgggcgttccgcaagaaggggtacatcc 146
Query: 140 cgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacg 199
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 147 cgctcaccacctacctgcgcacctacaagatcggcgcctacgtcgacgtcaaggtgaacg 206
Query: 200 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccgggagcgtctgga 259
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 207 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccggacgcgtctgga 266
Query: 260 acgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacggtcgcatcatca 319
||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 267 acgtcaccaagcgcgccatcggtgtcgagatcaacaagcaggttaatggccgcatcatca 326
Query: 320 ggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacag-aggagttc 378
||||||| |||||||| || ||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 327 ggaagcgtatccatgtacgtgtggagcatgtgcagccctcccgatgcacagnaggagttc 386
Query: 379 cgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgcggtgaggtg 438
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 cgcttgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgtggtgaggtg 446
Query: 439 atcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgagggtgctaca 498
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 447 atcagcaccaagaggcaacctgtgggacccaaacctggcttcatggttgagggtgctacg 506
Query: 499 ctcgagacagtcactcctattccttatgatgtggtcaacgatctcaag 546
|| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 507 cttgagacagtcactcctattccttatgatgtggtcaatgatctcaag 554
>gb|BG048520.1|BG048520 OV1_14_E11.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 773 bits (390), Expect = 0.0
Identities = 461/485 (95%)
Strand = Plus / Plus
Query: 52 aggagcaggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcg 111
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 aggagnaagaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcg 72
Query: 112 cggcccttccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatc 171
||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 73 cgggcgttccgcaagaaggggtacatcccgctcaccacctacatgcgcacctacaagatc 132
Query: 172 ggcgactacgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttc 231
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggcgcctacgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttc 192
Query: 232 taccacggccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatc 291
||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 193 taccacggccgcaccggacgcgtctggaacgtcaccaagcgcgccatcggtgtcgagatc 252
Query: 292 aacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtg 351
|||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 253 aacaagcaggttaatggccgcatcatcaggaagcgtatccatgtacgtgtggagcatgtg 312
Query: 352 cagccctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaag 411
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 313 cagccctcccgatgcacagaggagttccgcttgaggaaagccaagaatgaccagctcaag 372
Query: 412 gcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaa 471
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 gcggatgccaaggcccgtggtgaggtgatcagcaccaagaggcaacctgtgggacccaaa 432
Query: 472 cctggcttcatggtcgagggtgctacactcgagacagtcactcctattccttatgatgtg 531
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 433 cctggcttcatggttgagggtgctacgcttgagacagtcactcctattccttatgatgtg 492
Query: 532 gtcaa 536
|||||
Sbjct: 493 gtcaa 497
>gb|BG157960.1|BG157960 OV1_15_B07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 712 bits (359), Expect = 0.0
Identities = 444/472 (94%), Gaps = 4/472 (0%)
Strand = Plus / Plus
Query: 20 ccgccgtcgccgcccagccgcagtaaggaggaaggagcaggaagatgccggcggggcacg 79
|||||| |||||||||||| ||| |||||||| | || |||||||||||||||||||
Sbjct: 29 ccgccgccgccgcccagccacaggaaggaggaggaag----aagatgccggcggggcacg 84
Query: 80 ggctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcc 139
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 85 ggctgcggtcgcggacccgcgacctgttcgcgcgggcgttccgcaagaaggggtacatcc 144
Query: 140 cgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacg 199
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 145 cgctcaccacctacctgcgcacctacaagatcggcgcctacgtcgacgtcaaggtgaacg 204
Query: 200 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccgggagcgtctgga 259
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccggacgcgtctgga 264
Query: 260 acgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacggtcgcatcatca 319
||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 265 acgtcaccaagcgcgccatcggtgtcgagatcaacaagcaggttaatggccgcatcatca 324
Query: 320 ggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacagaggagttcc 379
||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 ggaagcgtatccatgtacgtgtggagcatgtgcagccctcccgatgcacagaggagttcc 384
Query: 380 gcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgcggtgaggtga 439
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 gcttgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgtggtgaggtga 444
Query: 440 tcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgaggg 491
|||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 445 tcagcaccaagaggcaacctgtgggacccaaacctggcttcatggttgaggg 496
>gb|BF705070.1|BF705070 RHIZ2_1_A09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 446
Score = 630 bits (318), Expect = e-179
Identities = 394/419 (94%), Gaps = 4/419 (0%)
Strand = Plus / Plus
Query: 20 ccgccgtcgccgcccagccgcagtaaggaggaaggagcaggaagatgccggcggggcacg 79
|||||| |||||||||||| ||| |||||||| | || |||||||||||||||||||
Sbjct: 32 ccgccgccgccgcccagccacaggaaggaggaggaag----aagatgccggcggggcacg 87
Query: 80 ggctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcc 139
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 88 ggctgcggtcgcggacccgcgacctgttcgcgcgggcgttccgcaagaaggggtacatcc 147
Query: 140 cgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacg 199
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cgctcaccacctatctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacg 207
Query: 200 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccgggagcgtctgga 259
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 208 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccggacgcgtctgga 267
Query: 260 acgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacggtcgcatcatca 319
||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 268 acgtcaccaagcgcgccatcggtgtcgagatcaacaagcaggttaatggccgcatcatca 327
Query: 320 ggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacagaggagttcc 379
||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 328 ggaagcgtatccatgtacgtgtggagcatgtgcagccctcccgatgcacagaggagttcc 387
Query: 380 gcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgcggtgaggtg 438
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 gcttgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgtggtgaggtg 446
>gb|BF480809.1|BF480809 FM1_14_B12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 548
Score = 595 bits (300), Expect = e-168
Identities = 435/480 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 66 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 125
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 126 caagaagggctacatcccgctcaccacctacctccgcacctacaagatcggcgactacgt 185
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 186 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 245
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 305
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 306 taatggtcgcatcatcaggaagcgtatccatgtccgcgtggagcacgtgcagccgtcccg 365
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| |||| |||||||| |||||
Sbjct: 366 ctgcacagaagagttccgcctgaggaaggcaaagaatgatgagctgaaggcggacgccaa 425
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| ||||| ||||| |||||
Sbjct: 426 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtcccaagcctggattcat 485
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| |||||||| || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 486 ggttgagggtgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 545
>gb|BG605764.1|BG605764 RHIZ2_81_B12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 625
Score = 595 bits (300), Expect = e-168
Identities = 447/496 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 40 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 99
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 100 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 159
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 160 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 219
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 220 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 279
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 280 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 339
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 340 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 399
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 400 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 459
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 460 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 519
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 520 caagggaggatactag 535
>gb|CD429133.1|CD429133 ETH1_2_D09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_2_D09_A002 5', mRNA sequence
Length = 657
Score = 595 bits (300), Expect = e-168
Identities = 447/496 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 82 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 141
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 142 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 201
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 202 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 261
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 262 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 321
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 322 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 381
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 382 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 441
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 442 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 501
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 502 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 561
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 562 caagggaggatactag 577
>gb|CN127128.1|CN127128 RHOH1_21_E08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_E08_A002 3', mRNA sequence
Length = 742
Score = 595 bits (300), Expect = e-168
Identities = 447/496 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 83 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 142
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 143 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 202
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 203 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 262
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 322
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 323 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 382
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 383 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 442
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 443 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 502
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 503 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 562
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 563 caagggaggatactag 578
>gb|CN127215.1|CN127215 RHOH1_21_E08.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_E08_A002 5', mRNA sequence
Length = 736
Score = 595 bits (300), Expect = e-168
Identities = 447/496 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 77 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 136
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 137 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 196
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 197 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 256
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 257 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 316
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 317 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 376
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 377 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 436
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 437 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 496
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 497 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 556
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 557 caagggaggatactag 572
>gb|CX606314.1|CX606314 ANR1_2_H01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_H01_A002 3', mRNA sequence
Length = 716
Score = 595 bits (300), Expect = e-168
Identities = 447/496 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 21 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 80
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 81 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 140
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 141 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 200
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 260
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 261 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 320
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 321 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 380
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 381 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 440
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 441 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 500
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 501 caagggaggatactag 516
>gb|CX606409.1|CX606409 ANR1_2_H01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_H01_A002 5', mRNA sequence
Length = 777
Score = 595 bits (300), Expect = e-168
Identities = 447/496 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 72 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 131
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 132 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 191
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 192 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 251
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 252 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 311
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 312 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 371
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 372 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 431
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 432 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 491
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 492 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 551
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 552 caagggaggatactag 567
>gb|CX611934.1|CX611934 ANR1_27_C05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_C05_A002 5', mRNA sequence
Length = 773
Score = 595 bits (300), Expect = e-168
Identities = 447/496 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 74 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 133
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 134 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 193
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 194 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 253
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 254 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 313
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 314 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 373
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 374 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 433
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 434 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 493
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 494 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 553
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 554 caagggaggatactag 569
>gb|AW747263.1|AW747263 WS1_67_D10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 558
Score = 591 bits (298), Expect = e-167
Identities = 439/486 (90%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 73 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 132
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 133 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 192
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 193 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 252
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 253 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 312
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 313 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 372
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 373 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 432
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 433 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 492
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 493 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 552
Query: 543 caaggg 548
||||||
Sbjct: 553 caaggg 558
>gb|CN138025.1|CN138025 OX1_61_F07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_F07_A002 3', mRNA sequence
Length = 748
Score = 587 bits (296), Expect = e-166
Identities = 446/496 (89%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||| ||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 21 gatgcgggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 80
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 81 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 140
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 141 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 200
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 260
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 261 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 320
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 321 ctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaa 380
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| || || ||||| |||||
Sbjct: 381 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcat 440
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| || || ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 441 ggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatct 500
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 501 caagggaggatactag 516
>gb|CF760749.1|CF760749 DSAF1_66_A03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_A03_A011 5', mRNA sequence
Length = 363
Score = 585 bits (295), Expect = e-165
Identities = 343/359 (95%)
Strand = Plus / Plus
Query: 84 gcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcccgct 143
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1 gcggtcgcggacccgcgacctgttcgcgcgggcgttccgcaagaaggggtacatcccgct 60
Query: 144 caccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacggcgc 203
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 caccacctacctgcgcacctacaagatcggcgactacgtcgacgtcaaggtgaacggcgc 120
Query: 204 cgtgcacaagggcatgccgcacaagttctaccacggccgcaccgggagcgtctggaacgt 263
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 cgtgcacaagggcatgccgcacaagttctaccacggccgcaccggacgcgtctggaacgt 180
Query: 264 caccaagcgcgccattggcgtcgagatcaacaagcaggttaacggtcgcatcatcaggaa 323
||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 181 caccaagcgcgccatcggtgtcgagatcaacaagcaggttaatggccgcatcatcaggaa 240
Query: 324 gcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacagaggagttccgcct 383
||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 241 gcgtatccatgtacgtgtggagcatgtgcagccctcccgatgcacagaggagttccgctt 300
Query: 384 gaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgcggtgaggtgatca 442
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 gaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgtggtgaggtgatca 359
>gb|BQ656086.1|BQ656086 pRC1054 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1054, mRNA sequence
Length = 638
Score = 523 bits (264), Expect = e-147
Identities = 393/436 (90%)
Strand = Plus / Plus
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 1 caagaagggctacatcccgctcaccacctacctccgcacctacaagatcggcgactacgt 60
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 61 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 120
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 180
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||
Sbjct: 181 taatggtcgcatcatcaggaagcgtatccacgtccgtgtggagcacgtgcagccgtcccg 240
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
|||||||| ||||||||||||||||| || |||||||| |||| ||||||||||||||
Sbjct: 241 ctgcacagaagagttccgcctgaggaaggcaaagaatgatgagctgaaggcggatgccaa 300
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||||||||||||||| |||| ||||| ||||| |||||
Sbjct: 301 ggcacgtggtgaggtcatcagcaccaagaggcagccattgggtcccaagcctggattcat 360
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| ||||| |||| ||||||| |||||||| || || || ||||||||||| |||||
Sbjct: 361 ggttgagggcactaccatcgagactgtcactcccatcccgtacgatgtggtcaatgatct 420
Query: 543 caagggcggttactag 558
|||||| || ||||||
Sbjct: 421 caagggaggatactag 436
>gb|AW747350.1|AW747350 WS1_67_D10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 589
Score = 515 bits (260), Expect = e-144
Identities = 388/431 (90%)
Strand = Plus / Plus
Query: 128 aggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacg 187
|||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 1 agggntacatcccgctcaccacctacctccgcacctacaagattggcgactacgtcgacg 60
Query: 188 tcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccg 247
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 tcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccgcaccg 120
Query: 248 ggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacg 307
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 121 gtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggttaatg 180
Query: 308 gtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgca 367
||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 181 gtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccgctgca 240
Query: 368 cagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggccc 427
|||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |
Sbjct: 241 cagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaaggcac 300
Query: 428 gcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcg 487
| |||||||| |||||||||||||||||||| |||| || || ||||| |||||||| |
Sbjct: 301 gtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcatggttg 360
Query: 488 agggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagg 547
|||| || || ||||||| |||||||| || || || ||||||||||| ||||||||||
Sbjct: 361 agggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatctcaagg 420
Query: 548 gcggttactag 558
| || ||||||
Sbjct: 421 gaggatactag 431
>gb|AI723862.1|AI723862 RHIZ1_28_E02.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 431
Score = 486 bits (245), Expect = e-135
Identities = 340/370 (91%), Gaps = 5/370 (1%)
Strand = Plus / Plus
Query: 291 caacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgt 350
||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||
Sbjct: 8 caacaagcaggttaatggccgcatcatcaggaagcgcatccatgtacgtgtggagcatgt 67
Query: 351 gcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaa 410
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68 gcagccctcccgatgcacagaggagttccgcttgaggaaagccaagaatgaccagctcaa 127
Query: 411 ggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaa 470
|||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 128 ggcggatgccaaggcccgtggtgaggtgatcagtaccaaaaggcaacctgtgggacccaa 187
Query: 471 acctggcttcatggtcgagggtgctacactcgagacagtcactcctattccttatgatgt 530
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 188 acctggcttcatggttgagggtgctacacttgagacagtcactcctattccttatgatgt 247
Query: 531 ggtcaacgatctcaagggcggttactagagagaattcttgtaccttcagcagttcaaacg 590
|||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||| |
Sbjct: 248 ggtcaatgatctcaagggtggttattagagagaattcttgtaccttgagcagttcaagtg 307
Query: 591 agctggc----aaacttatctgaatcttttttgataattggctagttcttctgttctggt 646
||||||| | ||||||||||||| |||||||||| || |||||||| |||||||||
Sbjct: 308 agctggcataaatacttatctgaatc-tttttgataactgcgtagttcttttgttctggt 366
Query: 647 gttatgaacc 656
|||||||||
Sbjct: 367 tttatgaacc 376
>gb|BF480859.1|BF480859 FM1_14_B12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 578
Score = 486 bits (245), Expect = e-135
Identities = 359/397 (90%)
Strand = Plus / Plus
Query: 162 ctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaagggcatgcc 221
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 1 ctacaagatcggcgactacgtcgacgtcaaggtgaacggcgccgtccacaaggggatgcc 60
Query: 222 gcacaagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgccattgg 281
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 61 gcacaagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagcgcgccatcgg 120
Query: 282 cgtcgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccgcgt 341
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 121 cgtcgagatcaacaagcaggttaatggtcgcatcatcaggaagcgtatccatgtccgcgt 180
Query: 342 ggagcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaatga 401
|||||| |||||||| ||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 181 ggagcacgtgcagccgtcccgctgcacagaagagttccgcctgaggaaggcaaagaatga 240
Query: 402 ccagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgt 461
|||| |||||||| |||||||| || |||||||| |||||||||||||||||||| |
Sbjct: 241 tgagctgaaggcggacgccaaggcacgtggtgaggtcatcagcaccaagaggcagccatt 300
Query: 462 gggacccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctattcc 521
||| ||||| ||||| |||||||| |||||||| || ||||||| |||||||| || ||
Sbjct: 301 gggtcccaagcctggattcatggttgagggtgccaccatcgagaccgtcactcccatccc 360
Query: 522 ttatgatgtggtcaacgatctcaagggcggttactag 558
|| ||||||||||| ||||||||||| || ||||||
Sbjct: 361 gtacgatgtggtcaatgatctcaagggaggatactag 397
>gb|CD429012.1|CD429012 ETH1_2_D09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_2_D09_A002 3', mRNA sequence
Length = 563
Score = 482 bits (243), Expect = e-134
Identities = 366/407 (89%)
Strand = Plus / Plus
Query: 152 acctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcaca 211
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 1 acctccgcacctacaagattggcgactacgtcgacgtcaaggtgaacggcgccgtccaca 60
Query: 212 agggcatgccgcacaagttctaccacggccgcaccgggagcgtctggaacgtcaccaagc 271
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 aggggatgccgcacaagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagc 120
Query: 272 gcgccattggcgtcgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatcc 331
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 121 gcgccatcggcgtcgagatcaacaagcaggttaatggtcgcatcatcaggaagcgtatcc 180
Query: 332 atgtccgcgtggagcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaag 391
||||||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||| |
Sbjct: 181 atgtccgtgtggagcacgtgcagccgtcccgctgcacagaagagttccgcctgaggaagg 240
Query: 392 ccaagaatgaccagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaaga 451
| |||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 241 caaagaatgatcagctgaaggcggatgccaaggcacgtggtgaggtcatcagcaccaaga 300
Query: 452 ggcagcctgtgggacccaaacctggcttcatggtcgagggtgctacactcgagacagtca 511
||||||| |||| || || ||||| |||||||| ||||| || || ||||||| ||||
Sbjct: 301 ggcagccattgggtccgaagcctggattcatggttgagggcgccaccatcgagaccgtca 360
Query: 512 ctcctattccttatgatgtggtcaacgatctcaagggcggttactag 558
|||| || || || ||||||||||| ||||||||||| || ||||||
Sbjct: 361 ctcccatcccgtacgatgtggtcaatgatctcaagggaggatactag 407
>gb|BG159321.1|BG159321 OV2_6_C08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 474
Score = 476 bits (240), Expect = e-132
Identities = 360/400 (90%)
Strand = Plus / Plus
Query: 159 cacctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaagggcat 218
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct: 1 cacctacaagattggcgactacgtcgacgtcaaggtgaacggcgccgtccacaaggggat 60
Query: 219 gccgcacaagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgccat 278
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 gccgcacaagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagcgcgccat 120
Query: 279 tggcgtcgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccg 338
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 121 cggcgtcgagatcaacaagcaggttaatggtcgcatcatcaggaagcgtatccatgtccg 180
Query: 339 cgtggagcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaa 398
|||||||| |||||||| ||||| |||||||| ||||||||||||||||| || |||||
Sbjct: 181 tgtggagcacgtgcagccgtcccgctgcacagaagagttccgcctgaggaaggcaaagaa 240
Query: 399 tgaccagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcc 458
||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 241 tgatcagctgaaggcggatgccaaggcacgtggtgaggtcatcagcaccaagaggcagcc 300
Query: 459 tgtgggacccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctat 518
|||| || || ||||| |||||||| ||||| || || ||||||| |||||||| ||
Sbjct: 301 attgggtccgaagcctggattcatggttgagggcgccaccatcgagaccgtcactcccat 360
Query: 519 tccttatgatgtggtcaacgatctcaagggcggttactag 558
|| || ||||||||||| ||||||||||| || ||||||
Sbjct: 361 cccgtacgatgtggtcaatgatctcaagggaggatactag 400
>gb|CF487412.1|CF487412 POL1_43_D07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D07_A002 5', mRNA sequence
Length = 632
Score = 474 bits (239), Expect = e-132
Identities = 359/399 (89%)
Strand = Plus / Minus
Query: 160 acctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaagggcatg 219
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 622 acctacaagattggcgactacgtcgacgtcaaggtgaacggcgccgtccacaaggggatg 563
Query: 220 ccgcacaagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgccatt 279
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 562 ccgcacaagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagcgcgccatc 503
Query: 280 ggcgtcgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccgc 339
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 502 ggcgtcgagatcaacaagcaggttaatggtcgcatcatcaggaagcgtatccatgtccgt 443
Query: 340 gtggagcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaat 399
|||||||| |||||||| ||||| |||||||| ||||||||||||||||| || ||||||
Sbjct: 442 gtggagcacgtgcagccgtcccgctgcacagaagagttccgcctgaggaaggcaaagaat 383
Query: 400 gaccagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcct 459
|| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 382 gatcagctgaaggcggatgccaaggcacgtggtgaggtcatcagcaccaagaggcagcca 323
Query: 460 gtgggacccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctatt 519
|||| || || ||||| |||||||| ||||| || || ||||||| |||||||| ||
Sbjct: 322 ttgggtccgaagcctggattcatggttgagggcgccaccatcgagaccgtcactcccatc 263
Query: 520 ccttatgatgtggtcaacgatctcaagggcggttactag 558
|| || ||||||||||| ||||||||||| || ||||||
Sbjct: 262 ccgtacgatgtggtcaatgatctcaagggaggatactag 224
>gb|AW745997.1|AW745997 WS1_38_A06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 571
Score = 462 bits (233), Expect = e-128
Identities = 353/393 (89%)
Strand = Plus / Plus
Query: 166 aagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcac 225
||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 1 aagattggcgactacgtcgacgtcaaggtgaacggcgccgtccacaaggggatgccgcac 60
Query: 226 aagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtc 285
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 61 aagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtc 120
Query: 286 gagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggag 345
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 121 gagatcaacaagcaggttaatggtcgcatcatcaggaagcgtatccatgtccgtgtggag 180
Query: 346 catgtgcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccag 405
|| |||||||| ||||| |||||||| ||||||||||||||||| || |||||||| |||
Sbjct: 181 cacgtgcagccgtcccgctgcacagaagagttccgcctgaggaaggcaaagaatgatcag 240
Query: 406 ctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtggga 465
|| ||||||||||||||||| || |||||||| |||||||||||||||||||| ||||
Sbjct: 241 ctgaaggcggatgccaaggcacgtggtgaggtcatcagcaccaagaggcagccattgggt 300
Query: 466 cccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctattccttat 525
|| || ||||| |||||||| ||||| || || ||||||| |||||||| || || ||
Sbjct: 301 ccgaagcctggattcatggttgagggcgccaccatcgagaccgtcactcccatcccgtac 360
Query: 526 gatgtggtcaacgatctcaagggcggttactag 558
||||||||||| ||||||||||| || ||||||
Sbjct: 361 gatgtggtcaatgatctcaagggaggatactag 393
>gb|BF704648.1|BF704648 FM1_49_G06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 375
Score = 454 bits (229), Expect = e-126
Identities = 289/309 (93%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 66 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 125
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 126 caagaagggctacatcccgctcaccacctacctccgcacctacaagatcggcgactacgt 185
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 186 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 245
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 305
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 306 taatggtcgcatcatcaggaagcgtatccatgtccgcgtggagcacgtgcagccgtcccg 365
Query: 363 ttgcacaga 371
||||||||
Sbjct: 366 ctgcacaga 374
>gb|BG241020.1|BG241020 OV1_37_C01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 388
Score = 448 bits (226), Expect = e-124
Identities = 295/318 (92%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 71 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 130
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 131 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 190
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 191 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 250
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 310
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 311 taatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccg 370
Query: 363 ttgcacagaggagttccg 380
|||||||| ||||||||
Sbjct: 371 ctgcacagaagagttccg 388
>gb|AW745886.1|AW745886 WS1_38_B06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 309
Score = 428 bits (216), Expect = e-118
Identities = 276/296 (93%)
Strand = Plus / Plus
Query: 76 cacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtac 135
||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct: 9 cacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccgcaagaagggctac 68
Query: 136 atcccgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggtt 195
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 69 atcccgctcaccacctacctccgcacctacaagattggcgactacgtcgacgtcaaggtg 128
Query: 196 aacggcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccgggagcgtc 255
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 129 aacggcgccgtccacaaggggatgccgcacaagttctaccacggccgcaccggtcgcgtc 188
Query: 256 tggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacggtcgcatc 315
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 189 tggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggttaatggtcgcatc 248
Query: 316 atcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacaga 371
||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 249 atcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccgctgcacaga 304
>gb|CF486548.1|CF486548 POL1_38_H01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_H01_A002 3', mRNA sequence
Length = 559
Score = 426 bits (215), Expect = e-117
Identities = 332/371 (89%)
Strand = Plus / Plus
Query: 188 tcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccg 247
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccgcaccg 60
Query: 248 ggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacg 307
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 61 gtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggttaatg 120
Query: 308 gtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgca 367
||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 121 gtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccgtcccgctgca 180
Query: 368 cagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggccc 427
|||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |
Sbjct: 181 cagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggatgccaaggcac 240
Query: 428 gcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcg 487
| |||||||| |||||||||||||||||||| |||| || || ||||| |||||||| |
Sbjct: 241 gtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctggattcatggttg 300
Query: 488 agggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagg 547
|||| || || ||||||| |||||||| || || || ||||||||||| ||||||||||
Sbjct: 301 agggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatctcaagg 360
Query: 548 gcggttactag 558
| || ||||||
Sbjct: 361 gaggatactag 371
>gb|CW286922.1|CW286922 104_764_11411146_116_35514_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411146, DNA
sequence
Length = 502
Score = 416 bits (210), Expect = e-114
Identities = 265/283 (93%), Gaps = 4/283 (1%)
Strand = Plus / Minus
Query: 20 ccgccgtcgccgcccagccgcagtaaggaggaaggagcaggaagatgccggcggggcacg 79
|||||| |||||||||||| ||| |||||||| | || |||||||||||||||||||
Sbjct: 427 ccgccgccgccgcccagccacaggaaggaggaggaag----aagatgccggcggggcacg 372
Query: 80 ggctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcc 139
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 371 ggctgcggtcgcggacccgcgacctgttcgcgcgggcgttccgcaagaaggggtacatcc 312
Query: 140 cgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacg 199
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 311 cgctcaccacctacctgcgcacctacaagatcggcgcctacgtcgacgtcaaggtgaacg 252
Query: 200 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccgggagcgtctgga 259
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 251 gcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccggacgcgtctgga 192
Query: 260 acgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 191 acgtcaccaagcgcgccatcggtgtcgagatcaacaagcaggt 149
>gb|BE593254.1|BE593254 WS1_99_E03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 507
Score = 377 bits (190), Expect = e-102
Identities = 298/334 (89%)
Strand = Plus / Plus
Query: 225 caagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgt 284
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 9 caagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagcgcgccatcggcgt 68
Query: 285 cgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccgcgtgga 344
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct: 69 cgagatcaacaagcaggttaatggtcgcatcatcaggaagcgtatccatgtccgtgtgga 128
Query: 345 gcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaatgacca 404
||| |||||||| ||||| |||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 129 gcacgtgcagccgtcccgctgcacagaagagttccgcctgaggaaggcaaagaatgatca 188
Query: 405 gctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtggg 464
||| ||||||||||||||||| || |||||||| |||||||||||||||||||| ||||
Sbjct: 189 gctgaaggcggatgccaaggcacgtggtgaggtcatcagcaccaagaggcagccattggg 248
Query: 465 acccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctattcctta 524
|| || ||||| |||||||| ||||| || || ||||||| |||||||| || || ||
Sbjct: 249 tccgaagcctggattcatggttgagggcgccaccatcgagaccgtcactcccatcccgta 308
Query: 525 tgatgtggtcaacgatctcaagggcggttactag 558
||||||||||| ||||||||||| || ||||||
Sbjct: 309 cgatgtggtcaatgatctcaagggaggatactag 342
>gb|BE593669.1|BE593669 WS1_99_E03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 375 bits (189), Expect = e-102
Identities = 297/333 (89%)
Strand = Plus / Plus
Query: 225 caagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgt 284
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 9 caagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagcgcgccatcggcgt 68
Query: 285 cgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccgcgtgga 344
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct: 69 cgagatcaacaagcaggttaatggtcgcatcatcaggaagcgtatccatgtccgtgtgga 128
Query: 345 gcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaatgacca 404
||| |||||||| ||||| |||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 129 gcacgtgcagccgtcccgctgcacagaagagttccgcctgaggaaggcaaagaatgatca 188
Query: 405 gctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtggg 464
||| ||||||||||||||||| || |||||||| |||||||||||||||||||| ||||
Sbjct: 189 gctgaaggcggatgccaaggcacgtggtgaggtcatcagcaccaagaggcagccattggg 248
Query: 465 acccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctattcctta 524
|| || ||||| |||||||| ||||| || || ||||||| |||||||| || || ||
Sbjct: 249 tccgaagcctggattcatggttgagggcgccaccatcgagaccgtcactcccatcccgta 308
Query: 525 tgatgtggtcaacgatctcaagggcggttacta 557
||||||||||| ||||||||||| || |||||
Sbjct: 309 cgatgtggtcaatgatctcaagggaggatacta 341
>gb|CD220797.1|CD220797 CCC1_69_H10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_69_H10_A007 5', mRNA sequence
Length = 634
Score = 357 bits (180), Expect = 1e-096
Identities = 225/240 (93%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 82 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 141
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 142 caagaagggctacatcccgctcaccacctacctccgcacctacaagatcggcgactacgt 201
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 202 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 261
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 262 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 321
>gb|CW211015.1|CW211015 104_641_11190092_116_37009_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190092, DNA
sequence
Length = 664
Score = 349 bits (176), Expect = 3e-094
Identities = 224/240 (93%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 239 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 298
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 299 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 358
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 359 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 418
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 419 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 478
>gb|BG104076.1|BG104076 RHIZ2_40_C03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 212
Score = 333 bits (168), Expect = 2e-089
Identities = 198/208 (95%)
Strand = Plus / Plus
Query: 154 ctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaag 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaag 64
Query: 214 ggcatgccgcacaagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgc 273
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 65 ggcatgccgcacaagttctaccacggccgcaccggacgcgtgtggaacgtcaccaagcgc 124
Query: 274 gccattggcgtcgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccat 333
||||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 125 gccatcggtgtcgagatcaacaagcaggttaatggccgcatcatcaggaagcgtatccat 184
Query: 334 gtccgcgtggagcatgtgcagccctccc 361
|| || ||||||||||||||||||||||
Sbjct: 185 gtacgtgtggagcatgtgcagccctccc 212
>gb|BG649651.1|BG649651 RHIZ2_81_B12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 539
Score = 313 bits (158), Expect = 1e-083
Identities = 206/222 (92%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 318 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 377
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 378 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 437
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 438 cgacgtcaaggtgaacggcgccgtccacaaggggatgccgcacaagttctaccacggccg 497
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgt 284
|||||| |||||||||||||||||||||||||||| |||||
Sbjct: 498 caccggtcgcgtctggaacgtcaccaagcgcgccatcggcgt 539
>gb|CD232565.1|CD232565 SS1_46_B08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_46_B08_A012 3', mRNA sequence
Length = 515
Score = 313 bits (158), Expect = 1e-083
Identities = 266/302 (88%)
Strand = Plus / Plus
Query: 257 ggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacggtcgcatca 316
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 1 ggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggttaatggtcgcatca 60
Query: 317 tcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacagaggagt 376
|||||||||| ||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 61 tcaggaagcgtatccacgtccgtgtggagcacgtgcagccgtcccgctgcacagaagagt 120
Query: 377 tccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgcggtgagg 436
||||||||||||| || |||||||| |||| ||||||||||||||||| || ||||| |
Sbjct: 121 tccgcctgaggaaggcaaagaatgatgagctgaaggcggatgccaaggcacgtggtgatg 180
Query: 437 tgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgagggtgcta 496
| |||||||||||||||||||| |||| ||||| ||||| |||||||| ||||| || |
Sbjct: 181 tcatcagcaccaagaggcagccattgggtcccaagcctggattcatggttgagggcgcca 240
Query: 497 cactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggcggttact 556
| ||||||| |||||||| || || || ||||||||||| ||||||||||| || ||||
Sbjct: 241 ccatcgagaccgtcactcccatcccgtacgatgtggtcaatgatctcaagggaggatact 300
Query: 557 ag 558
||
Sbjct: 301 ag 302
>gb|CN138109.1|CN138109 OX1_61_F07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_F07_A002 5', mRNA sequence
Length = 283
Score = 299 bits (151), Expect = 2e-079
Identities = 244/275 (88%)
Strand = Plus / Plus
Query: 97 cgcgacctgttcgcgcggcccttccgcaagaaggggtacatcccgctcaccacgtacctg 156
||||| || ||| |||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct: 5 cgcgaactcttcacgcgccccttccgcaagaagggctacatgccgctcaccacctacctc 64
Query: 157 cgcacctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaagggc 216
|||||||||||||| |||||||||||| || ||||||| ||||| ||| | |||||||
Sbjct: 65 cgcacctacaagattggcgactacgtcaacatcaaggtgaacggggccatcgacaagggg 124
Query: 217 atgccgcacaagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgcc 276
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 125 atgccgcacaagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagcgcgcc 184
Query: 277 attggcgtcgagatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatgtc 336
|| |||||| ||||||||||| ||||||| || ||||||||||||||||| |||||||||
Sbjct: 185 atcggcgtctagatcaacaagtaggttaatgggcgcatcatcaggaagcgtatccatgtc 244
Query: 337 cgcgtggagcatgtgcagccctcccgttgcacaga 371
|| |||||||| ||| || | ||||| ||||||||
Sbjct: 245 cgtgtggagcacgtgaagacgtcccgctgcacaga 279
>gb|CF758013.1|CF758013 DSAF1_26_B11.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_26_B11_A011 3', mRNA sequence
Length = 478
Score = 270 bits (136), Expect = 2e-070
Identities = 238/272 (87%)
Strand = Plus / Plus
Query: 287 agatcaacaagcaggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggagc 346
||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 1 agatcaacaagcaggttaatggtcgcatcatcaggaagcgtatccacgtccgtgtggagc 60
Query: 347 atgtgcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagc 406
| |||||||| ||||| |||||||| ||||||||||||||||| || |||||||| ||||
Sbjct: 61 acgtgcagccgtcccgctgcacagaagagttccgcctgaggaaggcaaagaatgatcagc 120
Query: 407 tcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggac 466
| ||||||||||||||||| || |||||||| |||||||||||||||||||| |||| |
Sbjct: 121 tgaaggcggatgccaaggcacgtggtgaggtcatcagcaccaagaggcagccattgggtc 180
Query: 467 ccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctattccttatg 526
| || ||||| |||||||| ||||| || || ||||||| |||||||| || || || |
Sbjct: 181 cgaagcctggattcatggttgagggcgccaccatcgagaccgtcactcccatcccgtacg 240
Query: 527 atgtggtcaacgatctcaagggcggttactag 558
|||||||||| ||||||||||| || ||||||
Sbjct: 241 atgtggtcaatgatctcaagggaggatactag 272
>gb|CW286923.1|CW286923 104_764_11411146_148_35518_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411146, DNA
sequence
Length = 530
Score = 258 bits (130), Expect = 7e-067
Identities = 182/199 (91%), Gaps = 4/199 (2%)
Strand = Plus / Plus
Query: 20 ccgccgtcgccgcccagccgcagtaaggaggaaggagcaggaagatgccggcggggcacg 79
|||||| |||||||||||| ||| |||||||| | || |||||||||||||||||||
Sbjct: 336 ccgccgccgccgcccagccacaggaaggaggaggaag----aagatgccggcggggcacg 391
Query: 80 ggctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcc 139
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 392 ggctgcggtcgcggacccgcgacctgttcgcgcgggcgttccgcaagaaggggtacatct 451
Query: 140 cgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacg 199
|||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct: 452 cgctcaccacctacctgcgcacctaccagatcggcgcctacgtcgacgtcaaggtgaacg 511
Query: 200 gcgccgtgcacaagggcat 218
||||||||||| |||||||
Sbjct: 512 gcgccgtgcaccagggcat 530
>gb|CW082706.1|CW082706 104_425_10943960_114_32351_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943960, DNA
sequence
Length = 684
Score = 256 bits (129), Expect = 3e-066
Identities = 228/261 (87%)
Strand = Plus / Plus
Query: 298 caggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccc 357
|||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 5 caggttaatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccg 64
Query: 358 tcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggat 417
||||| |||||||| ||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 65 tcccgctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggat 124
Query: 418 gccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggc 477
|||||||| || |||||||| |||||||||||||||||||| |||| || || |||||
Sbjct: 125 gccaaggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctgga 184
Query: 478 ttcatggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaac 537
|||||||| ||||| || || ||||||| |||||||| || || || |||||||||||
Sbjct: 185 ttcatggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaat 244
Query: 538 gatctcaagggcggttactag 558
||||||||||| || ||||||
Sbjct: 245 gatctcaagggaggatactag 265
>gb|CW082707.1|CW082707 104_425_10943960_114_32387_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943960, DNA
sequence
Length = 656
Score = 256 bits (129), Expect = 3e-066
Identities = 228/261 (87%)
Strand = Plus / Plus
Query: 298 caggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccc 357
|||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 5 caggttaatggtcgcatcatcaggaagcgtatccatgtccgtgtggagcacgtgcagccg 64
Query: 358 tcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggat 417
||||| |||||||| ||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 65 tcccgctgcacagaagagttccgcctgaggaaggcaaagaatgatcagctgaaggcggat 124
Query: 418 gccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggc 477
|||||||| || |||||||| |||||||||||||||||||| |||| || || |||||
Sbjct: 125 gccaaggcacgtggtgaggtcatcagcaccaagaggcagccattgggtccgaagcctgga 184
Query: 478 ttcatggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaac 537
|||||||| ||||| || || ||||||| |||||||| || || || |||||||||||
Sbjct: 185 ttcatggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaat 244
Query: 538 gatctcaagggcggttactag 558
||||||||||| || ||||||
Sbjct: 245 gatctcaagggaggatactag 265
>gb|CD220776.1|CD220776 CCC1_69_H10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_69_H10_A007 3', mRNA sequence
Length = 547
Score = 240 bits (121), Expect = 2e-061
Identities = 226/261 (86%)
Strand = Plus / Plus
Query: 298 caggttaacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccc 357
|||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 151 caggttaatggtcgcatcatcaggaagcgtatccacgtccgtgtggagcacgtgcagccg 210
Query: 358 tcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggat 417
||||| |||||||| ||||||||||||||||| || |||||||| |||| |||||||||
Sbjct: 211 tcccgctgcacagaagagttccgcctgaggaaggcaaagaatgatgagctgaaggcggat 270
Query: 418 gccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggc 477
|||||||| || ||||| || |||||||||||||||||||| |||| ||||| |||||
Sbjct: 271 gccaaggcacgtggtgatgtcatcagcaccaagaggcagccattgggtcccaagcctgga 330
Query: 478 ttcatggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaac 537
|||||||| ||||| || || ||||||| |||||||| || || || |||||||||||
Sbjct: 331 ttcatggttgagggcgccaccatcgagaccgtcactcccatcccgtacgatgtggtcaat 390
Query: 538 gatctcaagggcggttactag 558
||||||||||| || ||||||
Sbjct: 391 gatctcaagggaggatactag 411
>gb|CW437848.1|CW437848 fsbb001f155c21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f155c21, DNA
sequence
Length = 717
Score = 174 bits (88), Expect = 8e-042
Identities = 110/116 (94%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 188 tcaaggttaacggcgccgtgc-acaagggcatgccgcacaagttctaccacggccgcacc 246
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tcaaggtgaacggcgccgtgccacaagggcatgccgcacaagttctaccacggccgcacc 658
Query: 247 gggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|| |||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 657 ggacgcgtctggaacgtcaccaagcgcgccatcggtgtcgagatcaacaagcaggt 602
>gb|BG159577.1|BG159577 OV2_6_C08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 444
Score = 172 bits (87), Expect = 3e-041
Identities = 117/127 (92%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 318 gatgccggctggccacgggctgcgctcgcggacgcgcgacctcttcgcgcgccccttccg 377
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 378 caagaagggctacatcccgctcaccacctacctccgcacctacaagattggcgactacgt 437
Query: 183 cgacgtc 189
|||||||
Sbjct: 438 cgacgtc 444
>gb|CL155138.1|CL155138 104_340_10781897_116_31470_377 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781897, DNA
sequence
Length = 709
Score = 165 bits (83), Expect = 8e-039
Identities = 139/156 (89%), Gaps = 5/156 (3%)
Strand = Plus / Minus
Query: 505 acagtcactcctattccttatgatgtggtcaacgatctcaagggcggttactagagagaa 564
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 709 acagtcactcctattccttatgatgtggtcaatgatctcaagggtggttactagagagga 650
Query: 565 ttcttgtaccttcagcagttcaaacgagctggc----aaacttatctgaatcttttttga 620
|||||||||||| |||||||||| |||||||| | ||||||||||||| |||||||
Sbjct: 649 ttcttgtaccttgagcagttcaagtgagctggcataaatacttatctgaatc-tttttga 591
Query: 621 taattggctagttcttctgttctggtgttatgaacc 656
||| || |||||||| ||||||||| |||||||||
Sbjct: 590 taactgcgtagttcttttgttctggttttatgaacc 555
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 696 ttgccatggttgattgcaacctgttattttaccttctgtt 735
||||||||||||| || ||||| |||| ||||||||||||
Sbjct: 515 ttgccatggttgagtgaaaccttttatgttaccttctgtt 476
>gb|BG103739.1|BG103739 RHIZ2_40_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 109
Score = 161 bits (81), Expect = 1e-037
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 369 agaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccg 428
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 agagaagttccgcttgaggaaagccaagaatgaccagttcaaggcggatgccaaggcccg 60
Query: 429 cggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggc 477
|||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct: 61 tggtgaggtgatcagtaccaagaggcaacctgtgggacccaaacatggc 109
>gb|CW211016.1|CW211016 104_641_11190092_148_37008_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190092, DNA
sequence
Length = 689
Score = 147 bits (74), Expect = 2e-033
Identities = 83/86 (96%)
Strand = Plus / Minus
Query: 217 atgccgcacaagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgcc 276
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 686 atgccgcacaagttctaccacggccgcaccggtcgcgtctggaacgtcaccaagcgcgcc 627
Query: 277 attggcgtcgagatcaacaagcaggt 302
|| |||||||||||||||||||||||
Sbjct: 626 atcggcgtcgagatcaacaagcaggt 601
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 215,820
Number of Sequences: 832831
Number of extensions: 215820
Number of successful extensions: 59969
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 59895
Number of HSP's gapped (non-prelim): 67
length of query: 838
length of database: 491,359,669
effective HSP length: 20
effective length of query: 818
effective length of database: 474,703,049
effective search space: 388307094082
effective search space used: 388307094082
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)