BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2188214.2.1
(880 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW745683.1|AW745683 WS1_36_B11.g1_A002 Water-stressed 1 ... 527 e-148
gb|AW746681.1|AW746681 WS1_54_H03.g1_A002 Water-stressed 1 ... 527 e-148
gb|AW680764.1|AW680764 WS1_7_B09.b1_A002 Water-stressed 1 (... 519 e-145
gb|CD211575.1|CD211575 HS1_63_F12.b1_A012 Heat-shocked seed... 519 e-145
gb|CD212152.1|CD212152 HS1_71_G04.b1_A012 Heat-shocked seed... 519 e-145
gb|CN129758.1|CN129758 RHOH1_37_F03.b1_A002 Acid- and alkal... 519 e-145
gb|CN130862.1|CN130862 RHOH1_44_G05.b1_A002 Acid- and alkal... 519 e-145
gb|CD213035.1|CD213035 HS1_28_E12.b1_A012 Heat-shocked seed... 511 e-143
gb|CD229164.1|CD229164 CCC1_13_B11.b1_A007 Callus culture/c... 511 e-143
gb|CD210972.1|CD210972 HS1_58_D09.b1_A012 Heat-shocked seed... 509 e-142
gb|CN135327.1|CN135327 OX1_32_C03.b1_A002 Oxidatively-stres... 500 e-139
gb|CD229180.1|CD229180 CCC1_13_B11.g1_A007 Callus culture/c... 492 e-137
gb|CD211415.1|CD211415 HS1_60_B03.b1_A012 Heat-shocked seed... 490 e-136
gb|CD208906.1|CD208906 HS1_45_A03.b1_A012 Heat-shocked seed... 436 e-120
gb|CD462225.1|CD462225 SA1_40_H09.b1_A002 Salicylic acid-tr... 436 e-120
gb|BM331418.1|BM331418 PIC1_65_H04.g1_A002 Pathogen-infecte... 434 e-120
gb|AW677678.1|AW677678 WS1_10_F06.b1_A002 Water-stressed 1 ... 424 e-117
gb|BG947645.1|BG947645 IP1_7_C11.g1_A002 Immature pannicle ... 319 2e-085
gb|CD209681.1|CD209681 HS1_54_F10.b1_A012 Heat-shocked seed... 315 4e-084
gb|CD212142.1|CD212142 HS1_71_F02.b1_A012 Heat-shocked seed... 313 2e-083
gb|CD209515.1|CD209515 HS1_43_D01.b1_A012 Heat-shocked seed... 307 9e-082
gb|CL167684.1|CL167684 104_364_10810249_116_31803_313 Sorgh... 299 2e-079
gb|CW468255.1|CW468255 fsbb001f220f12f0 Sorghum methylation... 299 2e-079
gb|CL173030.1|CL173030 104_376_10890597_116_31795_117 Sorgh... 250 2e-064
gb|CF756594.1|CF756594 DSAF1_6_B04.g1_A011 Drought-stressed... 234 1e-059
gb|CF757158.1|CF757158 DSAF1_14_E03.g1_A011 Drought-stresse... 234 1e-059
gb|CF430276.1|CF430276 PH1_27_A10.b1_A002 Phosphorous-defic... 224 1e-056
gb|CW209293.1|CW209293 104_639_11189160_116_36988_092 Sorgh... 204 1e-050
gb|CL167683.1|CL167683 104_364_10810249_114_31802_313 Sorgh... 182 4e-044
gb|CF430329.1|CF430329 PH1_27_A10.g1_A002 Phosphorous-defic... 107 2e-021
gb|CW110902.1|CW110902 104_484_11103992_116_34530_032 Sorgh... 94 3e-017
gb|AW680870.1|AW680870 WS1_7_B09.g1_A002 Water-stressed 1 (... 94 3e-017
gb|BI211735.1|BI211735 IP1_27_C11.g1_A002 Immature pannicle... 94 3e-017
gb|CF433638.1|CF433638 NIT1_28_C09.b1_A002 Nitrogen-deficie... 94 3e-017
gb|CD207384.1|CD207384 HS1_65_G01.b1_A012 Heat-shocked seed... 86 6e-015
gb|CW468256.1|CW468256 fsbb001f220f12k0 Sorghum methylation... 80 4e-013
gb|CD207681.1|CD207681 HS1_34_B12.b1_A012 Heat-shocked seed... 74 2e-011
gb|CD204829.1|CD204829 HS1_10_E08.b1_A012 Heat-shocked seed... 64 2e-008
gb|CW110903.1|CW110903 104_484_11103992_148_34526_032 Sorgh... 46 0.005
gb|BE599200.1|BE599200 PI1_86_F01.b1_A002 Pathogen induced ... 42 0.085
gb|CD227606.1|CD227606 CCC1_52_B01.g1_A007 Callus culture/c... 42 0.085
gb|CD234485.1|CD234485 SS1_27_G02.g1_A012 Salt-stressed see... 42 0.085
gb|CN132189.1|CN132189 OX1_4_D04.g1_A002 Oxidatively-stress... 42 0.085
gb|CN137947.1|CN137947 OX1_60_F11.g1_A002 Oxidatively-stres... 42 0.085
gb|CN140022.1|CN140022 OX1_33_C04.g1_A002 Oxidatively-stres... 42 0.085
gb|BZ341341.1|BZ341341 ic44g04.b1 WGS-SbicolorF (JM107 adap... 40 0.34
gb|CL184981.1|CL184981 104_398_10899219_114_32366_004 Sorgh... 40 0.34
gb|CW048095.1|CW048095 104_286_10513102_114_30214 Sorghum m... 40 0.34
gb|CW118192.1|CW118192 104_494_11108071_116_34682_022 Sorgh... 40 0.34
gb|CW123487.1|CW123487 104_502_11111239_116_34687_018 Sorgh... 40 0.34
gb|CW146147.1|CW146147 104_539_11138836_116_34989_016 Sorgh... 40 0.34
gb|CW146148.1|CW146148 104_539_11138836_148_34985_016 Sorgh... 40 0.34
gb|CW160476.1|CW160476 104_567_11149906_148_36420_047 Sorgh... 40 0.34
gb|CW182382.1|CW182382 104_597_11164044_148_36657_034 Sorgh... 40 0.34
gb|CW246571.1|CW246571 104_707_11221395_148_35086_008 Sorgh... 40 0.34
gb|CW337962.1|CW337962 104_838_11484490_148_36124_045 Sorgh... 40 0.34
gb|CW475195.1|CW475195 fsbb001f231g24f0 Sorghum methylation... 40 0.34
gb|CW482137.1|CW482137 fsbb001f242b05f0 Sorghum methylation... 40 0.34
gb|CW499051.1|CW499051 fsbb001f293j23f0 Sorghum methylation... 40 0.34
gb|BM324210.1|BM324210 PIC1_25_F09.b1_A002 Pathogen-infecte... 40 0.34
>gb|AW745683.1|AW745683 WS1_36_B11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 647
Score = 527 bits (266), Expect = e-148
Identities = 362/396 (91%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 487 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 436
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 435 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 377
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgacttgcaattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 317
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 316 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 257
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 256 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 197
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 196 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctc 137
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 136 ctccatttctttgaggcactttacatgaatggtatg 101
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 486
Score = 40.1 bits (20), Expect = 0.34
Identities = 48/56 (85%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 287 aaatatgacattattacactagaa-tcacggagcgacaggagtaaaacggcaagag 341
|||||| ||||||| ||||||||| |||| |||||||||||| || ||||||||
Sbjct: 635 aaatataacattatcacactagaaatcacaaagcgacaggagtgaaggggcaagag 580
>gb|AW746681.1|AW746681 WS1_54_H03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 547
Score = 527 bits (266), Expect = e-148
Identities = 362/396 (91%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 389 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 338
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 337 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 279
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgacttgcaattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 219
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 218 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 159
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 158 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 99
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 98 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctc 39
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 38 ctccatttctttgaggcactttacatgaatggtatg 3
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 388
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| ||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 546 aagcaacagggaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 487
Query: 337 aagag 341
|||||
Sbjct: 486 aagag 482
>gb|AW680764.1|AW680764 WS1_7_B09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 519 bits (262), Expect = e-145
Identities = 361/396 (91%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 397 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 346
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 345 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 287
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 227
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 226 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 167
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 166 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 107
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 106 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctc 47
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 46 ctccatttctttgaggcactttacatgaatggtatg 11
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 396
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 554 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 495
Query: 337 aagag 341
|||||
Sbjct: 494 aagag 490
>gb|CD211575.1|CD211575 HS1_63_F12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_63_F12_A012 3', mRNA sequence
Length = 757
Score = 519 bits (262), Expect = e-145
Identities = 361/396 (91%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 387 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 336
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 335 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 277
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 217
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 216 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 157
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 156 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 97
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 96 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctc 37
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 36 ctccatttctttgaggcactttacatgaatggtatg 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 386
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 544 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 485
Query: 337 aagag 341
|||||
Sbjct: 484 aagag 480
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 620 ggcaccttcatgaatcaattccagctacaa 591
>gb|CD212152.1|CD212152 HS1_71_G04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_71_G04_A012 3', mRNA sequence
Length = 628
Score = 519 bits (262), Expect = e-145
Identities = 361/396 (91%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 389 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 338
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 337 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 279
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 219
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 218 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 159
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 158 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 99
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 98 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctc 39
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 38 ctccatttctttgaggcactttacatgaatggtatg 3
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 388
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 546 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 487
Query: 337 aagag 341
|||||
Sbjct: 486 aagag 482
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 622 ggcaccttcatgaatcaattccagctacaa 593
>gb|CN129758.1|CN129758 RHOH1_37_F03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_F03_A002 3', mRNA sequence
Length = 832
Score = 519 bits (262), Expect = e-145
Identities = 361/396 (91%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 594 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 543
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 542 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 484
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 424
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 423 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 364
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 363 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 304
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 303 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctc 244
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 243 ctccatttctttgaggcactttacatgaatggtatg 208
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 593
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 751 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 692
Query: 337 aagag 341
|||||
Sbjct: 691 aagag 687
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 827 ggcaccttcatgaatcaattccagctacaa 798
>gb|CN130862.1|CN130862 RHOH1_44_G05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_G05_A002 3', mRNA sequence
Length = 764
Score = 519 bits (262), Expect = e-145
Identities = 361/396 (91%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 530 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 479
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 478 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 420
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 360
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 359 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 300
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 299 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 240
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 239 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctc 180
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 179 ctccatttctttgaggcactttacatgaatggtatg 144
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 529
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 687 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 628
Query: 337 aagag 341
|||||
Sbjct: 627 aagag 623
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 763 ggcaccttcatgaatcaattccagctacaa 734
>gb|CD213035.1|CD213035 HS1_28_E12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_28_E12_A012 3', mRNA sequence
Length = 700
Score = 511 bits (258), Expect = e-143
Identities = 360/396 (90%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 492 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 441
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 440 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 382
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 322
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 262
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 261 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 202
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct: 201 tgccttcgacatgtcacaaaccgacttggagcaaagggcgcatgcaaactggcagtgctc 142
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 141 ctccatttctttgaggcactttacatgaatggtatg 106
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 491
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 649 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 590
Query: 337 aagag 341
|||||
Sbjct: 589 aagag 585
>gb|CD229164.1|CD229164 CCC1_13_B11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_B11_A007 3', mRNA sequence
Length = 638
Score = 511 bits (258), Expect = e-143
Identities = 360/396 (90%), Gaps = 9/396 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 434 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 383
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 382 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 324
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 264
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 204
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 203 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 144
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct: 143 tgccttcgacatgtcacaaaccgacttggaacaaagggggcatgcaaactggcagtgctc 84
Query: 800 nnnnattnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 83 ctccatttctttgaggcactttacatgaatggtatg 48
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 433
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 591 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 532
Query: 337 aagag 341
|||||
Sbjct: 531 aagag 527
>gb|CD210972.1|CD210972 HS1_58_D09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_D09_A012 3', mRNA sequence
Length = 730
Score = 509 bits (257), Expect = e-142
Identities = 356/391 (91%), Gaps = 9/391 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 382 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 331
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 330 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 272
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 212
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 211 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 152
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 151 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 92
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtncnc 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 91 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctc 32
Query: 800 nnnnattnctttcaggcactttacatgaatg 830
||| |||| ||||||||||||||||||
Sbjct: 31 ctccatttctttgaggcactttacatgaatg 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 381
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 539 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 480
Query: 337 aagag 341
|||||
Sbjct: 479 aagag 475
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 615 ggcaccttcatgaatcaattccagctacaa 586
>gb|CN135327.1|CN135327 OX1_32_C03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_32_C03_A002 3', mRNA sequence
Length = 605
Score = 500 bits (252), Expect = e-139
Identities = 321/345 (93%), Gaps = 1/345 (0%)
Strand = Plus / Minus
Query: 491 ccatcacgcttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgac 550
|||||||||||||||||||| |||||||||||| ||| |||| || ||||||||| ||
Sbjct: 346 ccatcacgcttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcac 288
Query: 551 ggtgttgtgtgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaatt 610
||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 287 ggtgtcgtgtgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaatt 228
Query: 611 ctggcacttgtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgca 670
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 227 ctggcacttgtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgca 168
Query: 671 taatatgcggaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgag 730
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 167 taatatgcggaccattttatcatcacaggagtcagacagagttgccagctccatgtcgag 108
Query: 731 cctttcccatgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactg 790
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tctctcccatgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactg 48
Query: 791 gcagtncncnnnnattnctttcaggcactttacatgaatggtatg 835
||||| | | ||| |||| |||||||||||||||||||||||
Sbjct: 47 gcagtgctcctccatttctttgaggcactttacatgaatggtatg 3
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 428 ggcaccttcatgaatcaattccagctacaa 399
>gb|CD229180.1|CD229180 CCC1_13_B11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_B11_A007 5', mRNA sequence
Length = 654
Score = 492 bits (248), Expect = e-137
Identities = 320/345 (92%), Gaps = 1/345 (0%)
Strand = Plus / Minus
Query: 491 ccatcacgcttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgac 550
|||||||||||||||||||| |||||||||||| ||| |||| || ||||||||| ||
Sbjct: 634 ccatcacgcttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcac 576
Query: 551 ggtgttgtgtgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaatt 610
||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 575 ggtgtcgtgtgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaatt 516
Query: 611 ctggcacttgtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgca 670
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 515 ctggcacttgtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgca 456
Query: 671 taatatgcggaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgag 730
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taatatgcggaccattttatcatcacaggagtcagacagagttgccagctccatgtcgag 396
Query: 731 cctttcccatgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactg 790
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 395 tctctcccatgccttcgacatgtcacaaaccgacttggaacaaagggggcatgcaaactg 336
Query: 791 gcagtncncnnnnattnctttcaggcactttacatgaatggtatg 835
||||| | | ||| |||| |||||||||||||||||||||||
Sbjct: 335 gcagtgctcctccatttctttgaggcactttacatgaatggtatg 291
>gb|CD211415.1|CD211415 HS1_60_B03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_60_B03_A012 3', mRNA sequence
Length = 734
Score = 490 bits (247), Expect = e-136
Identities = 329/356 (92%), Gaps = 9/356 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 364 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 313
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 312 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 254
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 194
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 193 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 134
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 133 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 74
Query: 740 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagt 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tgccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaactggcagt 18
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 363
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 521 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 462
Query: 337 aagag 341
|||||
Sbjct: 461 aagag 457
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 597 ggcaccttcatgaatcaattccagctacaa 568
>gb|CD208906.1|CD208906 HS1_45_A03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_45_A03_A012 3', mRNA sequence
Length = 522
Score = 436 bits (220), Expect = e-120
Identities = 302/329 (91%), Gaps = 9/329 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 320 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 269
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 268 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 210
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 150
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 149 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 90
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 89 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 30
Query: 740 tgccttcgacatgtcacaaaccgacttgg 768
|||||||||||||||||||||||||||||
Sbjct: 29 tgccttcgacatgtcacaaaccgacttgg 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 319
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 477 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 418
Query: 337 aagag 341
|||||
Sbjct: 417 aagag 413
>gb|CD462225.1|CD462225 SA1_40_H09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_H09_A002 3', mRNA sequence
Length = 690
Score = 436 bits (220), Expect = e-120
Identities = 302/329 (91%), Gaps = 9/329 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 320 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 269
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 268 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 210
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 150
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 149 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 90
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 89 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 30
Query: 740 tgccttcgacatgtcacaaaccgacttgg 768
|||||||||||||||||||||||||||||
Sbjct: 29 tgccttcgacatgtcacaaaccgacttgg 1
Score = 101 bits (51), Expect = 1e-019
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 353 ataacgaagggcggcagctagcagcagatatacaatctcgagctgtttgcctccgcagga 412
|||| |||||| |||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 389 ataatgaagggtggcagctagcagcagacaaataatctcgagctgtttgcctccgcagga 330
Query: 413 cccagtggagt 423
|||||||||||
Sbjct: 329 cccagtggagt 319
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 477 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 418
Query: 337 aagag 341
|||||
Sbjct: 417 aagag 413
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 553 ggcaccttcatgaatcaattccagctacaa 524
>gb|BM331418.1|BM331418 PIC1_65_H04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 434 bits (219), Expect = e-120
Identities = 301/328 (91%), Gaps = 9/328 (2%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 319 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 268
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 267 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 209
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 149
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 148 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 89
Query: 680 gaccattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttccca 739
||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 88 gaccattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctccca 29
Query: 740 tgccttcgacatgtcacaaaccgacttg 767
||||||||||||||||||||||||||||
Sbjct: 28 tgccttcgacatgtcacaaaccgacttg 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 318
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 476 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 417
Query: 337 aagag 341
|||||
Sbjct: 416 aagag 412
>gb|AW677678.1|AW677678 WS1_10_F06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 424 bits (214), Expect = e-117
Identities = 296/323 (91%), Gaps = 9/323 (2%)
Strand = Plus / Minus
Query: 441 tcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgct 500
|||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 595 tcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgct 544
Query: 501 tcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtgt 560
|||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| ||||
Sbjct: 543 tcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtgt 485
Query: 561 gacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcacttg 620
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcacttg 425
Query: 621 tgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcgg 680
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 424 tgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcgg 365
Query: 681 accattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttcccat 740
|||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 364 accattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctcccat 305
Query: 741 gccttcgacatgtcacaaaccga 763
|||||||||||||||||||||||
Sbjct: 304 gccttcgacatgtcacaaaccga 282
Score = 50.1 bits (25), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 804 attnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 266 atttctttgaggcactttacatgaatggtatg 235
>gb|BG947645.1|BG947645 IP1_7_C11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 624
Score = 319 bits (161), Expect = 2e-085
Identities = 237/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 253 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 202
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 201 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 143
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 83
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 82 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 23
Query: 680 gaccattttgtgatcacaggag 701
||||||||| | ||||||||||
Sbjct: 22 gaccattttatcatcacaggag 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 252
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 410 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 351
Query: 337 aagag 341
|||||
Sbjct: 350 aagag 346
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 486 ggcaccttcatgaatcaattccagctacaa 457
>gb|CD209681.1|CD209681 HS1_54_F10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_54_F10_A012 3', mRNA sequence
Length = 610
Score = 315 bits (159), Expect = 4e-084
Identities = 235/260 (90%), Gaps = 9/260 (3%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 251 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 200
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 199 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 141
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 140 tgacttgcaattcttacttcaaatctggcgggtgttgtatgacttgcaattccggcactt 81
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 80 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 21
Query: 680 gaccattttgtgatcacagg 699
||||||||| | ||||||||
Sbjct: 20 gaccattttatcatcacagg 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 250
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 408 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 349
Query: 337 aagag 341
|||||
Sbjct: 348 aagag 344
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 484 ggcaccttcatgaatcaattccagctacaa 455
>gb|CD212142.1|CD212142 HS1_71_F02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_71_F02_A012 3', mRNA sequence
Length = 658
Score = 313 bits (158), Expect = 2e-083
Identities = 234/259 (90%), Gaps = 9/259 (3%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 250 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 199
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 198 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 140
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 80
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 79 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 20
Query: 680 gaccattttgtgatcacag 698
||||||||| | |||||||
Sbjct: 19 gaccattttatcatcacag 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 249
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 407 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 348
Query: 337 aagag 341
|||||
Sbjct: 347 aagag 343
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 483 ggcaccttcatgaatcaattccagctacaa 454
>gb|CD209515.1|CD209515 HS1_43_D01.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_43_D01_A012 3', mRNA sequence
Length = 600
Score = 307 bits (155), Expect = 9e-082
Identities = 225/248 (90%), Gaps = 9/248 (3%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 239 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 188
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 187 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 129
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 69
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 68 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 9
Query: 680 gaccattt 687
||||||||
Sbjct: 8 gaccattt 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 238
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 396 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 337
Query: 337 aagag 341
|||||
Sbjct: 336 aagag 332
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 472 ggcaccttcatgaatcaattccagctacaa 443
>gb|CL167684.1|CL167684 104_364_10810249_116_31803_313 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810249, DNA
sequence
Length = 757
Score = 299 bits (151), Expect = 2e-079
Identities = 221/244 (90%), Gaps = 9/244 (3%)
Strand = Plus / Plus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 171 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 222
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 223 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 281
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 341
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 342 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 401
Query: 680 gacc 683
||||
Sbjct: 402 gacc 405
Score = 182 bits (92), Expect = 4e-044
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 681 accattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttcccat 740
|||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 597 accattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctcccat 656
Query: 741 gccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaac 788
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaac 704
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 172
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 14 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 73
Query: 337 aagag 341
|||||
Sbjct: 74 aagag 78
>gb|CW468255.1|CW468255 fsbb001f220f12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f220f12, DNA
sequence
Length = 675
Score = 299 bits (151), Expect = 2e-079
Identities = 221/244 (90%), Gaps = 9/244 (3%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 448 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 397
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 396 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 338
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 278
Query: 620 gtgcgcaatcaaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcg 679
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 gtgcgcaatcaaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcg 218
Query: 680 gacc 683
||||
Sbjct: 217 gacc 214
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 447
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 606 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 547
Query: 337 aagag 341
|||||
Sbjct: 546 aagag 542
>gb|CL173030.1|CL173030 104_376_10890597_116_31795_117 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890597, DNA
sequence
Length = 751
Score = 250 bits (126), Expect = 2e-064
Identities = 159/170 (93%)
Strand = Plus / Plus
Query: 514 cagaaacccccacaggatttgctatttcagatctgacggtgttgtgtgacttgcgattct 573
|||||||||| ||| |||| || ||||||||| ||||||| ||||||||||| |||||
Sbjct: 1 cagaaaccccacaaggctttgttacttcagatctcacggtgtcgtgtgacttgcaattct 60
Query: 574 tacttcaaatctggcgggtgttgtatgacttgcaattctggcacttgtgcgcaatcaaat 633
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacttcagatctggcgggtgttgtatgacttgcaattctggcacttgtgcgcaatcaaat 120
Query: 634 ggaactgcacatctgatattgccccgcagtcgttgcataatatgcggacc 683
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 ggaactgcacatctgatatagccccgcagtcgttgcataatatgcggacc 170
Score = 182 bits (92), Expect = 4e-044
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 681 accattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttcccat 740
|||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 362 accattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctcccat 421
Query: 741 gccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaac 788
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaac 469
Score = 50.1 bits (25), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 804 attnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 560 atttctttgaggcactttacatgaatggtatg 591
>gb|CF756594.1|CF756594 DSAF1_6_B04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_B04_A011 3', mRNA sequence
Length = 438
Score = 234 bits (118), Expect = 1e-059
Identities = 185/207 (89%), Gaps = 9/207 (4%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 198 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 147
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 146 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 88
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 28
Query: 620 gtgcgcaatcaaatggaactgcacatc 646
|||||||||||||||||||||||||||
Sbjct: 27 gtgcgcaatcaaatggaactgcacatc 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 197
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| |||||| |||||| |||||||||||| || |||
Sbjct: 355 aagcaacaggaaatataacattatcacactaaaatcacaaagcgacaggagtgaaggggc 296
Query: 337 aagag 341
|||||
Sbjct: 295 aagag 291
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 431 ggcaccttcatgaatcaattccagctacaa 402
>gb|CF757158.1|CF757158 DSAF1_14_E03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_14_E03_A011 3', mRNA sequence
Length = 607
Score = 234 bits (118), Expect = 1e-059
Identities = 185/207 (89%), Gaps = 9/207 (4%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 198 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 147
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 146 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 88
Query: 560 tgacttgcgattcttacttcaaatctggcgggtgttgtatgacttgcaattctggcactt 619
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tgacttgcaattcttacttcagatctggcgggtgttgtatgacttgcaattctggcactt 28
Query: 620 gtgcgcaatcaaatggaactgcacatc 646
|||||||||||||||||||||||||||
Sbjct: 27 gtgcgcaatcaaatggaactgcacatc 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 197
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 355 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 296
Query: 337 aagag 341
|||||
Sbjct: 295 aagag 291
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 431 ggcaccttcatgaatcaattccagctacaa 402
>gb|CF430276.1|CF430276 PH1_27_A10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A10_A002 3', mRNA sequence
Length = 609
Score = 224 bits (113), Expect = 1e-056
Identities = 187/210 (89%), Gaps = 10/210 (4%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatcagtccatcacgc 499
||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct: 201 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccat--------cacgc 150
Query: 500 ttcttgaagaaatgcagaaacccccacaggatttgctatttcagatctgacggtgttgtg 559
||||||||||| |||||||||||| ||| |||| || ||||||||| ||||||| |||
Sbjct: 149 ttcttgaagaa-tgcagaaaccccacaaggctttgttacttcagatctcacggtgtcgtg 91
Query: 560 tgacttgcgattcttacttcaaatctggcggg-tgttgtatgacttgcaattctggcact 618
|||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 90 tgacttgcaattcttacttcagatctggcggggtgttgtatgacttgcaattctggcact 31
Query: 619 tgtgcgcaatcaaatggaactgcacatctg 648
||||||||||||||||||||||||||||||
Sbjct: 30 tgtgcgcaatcaaatggaactgcacatctg 1
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 200
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 358 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 299
Query: 337 aagag 341
|||||
Sbjct: 298 aagag 294
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 434 ggcaccttcatgaatcaattccagctacaa 405
>gb|CW209293.1|CW209293 104_639_11189160_116_36988_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189160, DNA
sequence
Length = 678
Score = 204 bits (103), Expect = 1e-050
Identities = 112/115 (97%)
Strand = Plus / Minus
Query: 569 attcttacttcaaatctggcgggtgttgtatgacttgcaattctggcacttgtgcgcaat 628
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 674 attcttacttcagatctggcggttgttgtatgacttgcaattctggcacttgtgcgcaat 615
Query: 629 caaatggaactgcacatctgatattgccccgcagtcgttgcataatatgcggacc 683
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 614 caaatggaactgcacatctgatatagccccgcagtcgttgcataatatgcggacc 560
Score = 182 bits (92), Expect = 4e-044
Identities = 104/108 (96%)
Strand = Plus / Minus
Query: 681 accattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttcccat 740
|||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 368 accattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctcccat 309
Query: 741 gccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaac 788
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaac 261
Score = 50.1 bits (25), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 804 attnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 170 atttctttgaggcactttacatgaatggtatg 139
>gb|CL167683.1|CL167683 104_364_10810249_114_31802_313 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810249, DNA
sequence
Length = 726
Score = 182 bits (92), Expect = 4e-044
Identities = 104/108 (96%)
Strand = Plus / Minus
Query: 681 accattttgtgatcacaggagtcagacagagttgccagctccatgtcgagcctttcccat 740
|||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 491 accattttatcatcacaggagtcagacagagttgccagctccatgtcgagtctctcccat 432
Query: 741 gccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaac 788
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gccttcgacatgtcacaaaccgacttggagcaaagggggcatgcaaac 384
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 640 gcacatctgatattgccccgcagtcgttgcataatatgcggacc 683
|||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 726 gcacatttgatatagccccgcagtcgttgcataatatgcggacc 683
Score = 50.1 bits (25), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 804 attnctttcaggcactttacatgaatggtatg 835
||| |||| |||||||||||||||||||||||
Sbjct: 293 atttctttgaggcactttacatgaatggtatg 262
>gb|CF430329.1|CF430329 PH1_27_A10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A10_A002 5', mRNA sequence
Length = 770
Score = 107 bits (54), Expect = 2e-021
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 753 tcacaaaccgacttggagcaaagggggcatgcaaactggcagtncncnnnnattnctttc 812
||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||
Sbjct: 770 tcacaaaccgacttggagcaaagggggcatgcaaactggcagtgctcctccatttctttg 711
Query: 813 aggcactttacatgaatggtatg 835
||||||||||||||||||||||
Sbjct: 710 gggcactttacatgaatggtatg 688
>gb|CW110902.1|CW110902 104_484_11103992_116_34530_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103992, DNA
sequence
Length = 374
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 283
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatca 488
||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 282 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccatca 330
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 125 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 184
Query: 337 aagag 341
|||||
Sbjct: 185 aagag 189
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 49 ggcaccttcatgaatcaattccagctacaa 78
>gb|AW680870.1|AW680870 WS1_7_B09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 97
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatca 488
||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 98 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccatca 50
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 255 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 196
Query: 337 aagag 341
|||||
Sbjct: 195 aagag 191
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 331 ggcaccttcatgaatcaattccagctacaa 302
>gb|BI211735.1|BI211735 IP1_27_C11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 476
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 103
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatca 488
||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 104 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccatca 56
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 261 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 202
Query: 337 aagag 341
|||||
Sbjct: 201 aagag 197
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 337 ggcaccttcatgaatcaattccagctacaa 308
>gb|CF433638.1|CF433638 NIT1_28_C09.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_C09_A002 3', mRNA sequence
Length = 472
Score = 93.7 bits (47), Expect = 3e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccagtggagt 58
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatca 488
||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 59 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccatca 11
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 216 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 157
Query: 337 aagag 341
|||||
Sbjct: 156 aagag 152
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 292 ggcaccttcatgaatcaattccagctacaa 263
>gb|CD207384.1|CD207384 HS1_65_G01.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_65_G01_A012 3', mRNA sequence
Length = 471
Score = 85.7 bits (43), Expect = 6e-015
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||
Sbjct: 116 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggacccggtggagt 58
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatca 488
||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 59 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccatca 11
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 216 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 157
Query: 337 aagag 341
|||||
Sbjct: 156 aagag 152
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 292 ggcaccttcatgaatcaattccagctacaa 263
>gb|CW468256.1|CW468256 fsbb001f220f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f220f12, DNA
sequence
Length = 581
Score = 79.8 bits (40), Expect = 4e-013
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcagga-cccagtggagt 423
|||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||
Sbjct: 449 ggcagctagcagcagacaaataatctcgagctgtttgcctccgcaggaccccagtggagt 508
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 349 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 408
Query: 337 aagag 341
|||||
Sbjct: 409 aagag 413
Score = 60.0 bits (30), Expect = 4e-007
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 440 gtcttgccagatatcccggtgctcagcagctca-cgggaaggggccatca 488
||||||||||||||||| ||||||| ||||||| |||||||| |||||||
Sbjct: 507 gtcttgccagatatcccagtgctcaccagctcaccgggaaggagccatca 556
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 273 ggcaccttcatgaatcaattccagctacaa 302
>gb|CD207681.1|CD207681 HS1_34_B12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_34_B12_A012 3', mRNA sequence
Length = 507
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 440 gtcttgccagatatcccggtgctcagcagctcacgggaaggggccatca 488
||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 85 gtcttgccagatatcccagtgctcaccagctcacgggaaggagccatca 37
Score = 69.9 bits (35), Expect = 4e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 365 ggcagctagcagcagatatacaatctcgagctgtttgcctccgcaggacccagtggagt 423
|||||||||||||| | | | |||||||||||||||||||||||| |||||| ||||||
Sbjct: 142 ggcagctagcagcaaacaaataatctcgagctgtttgcctccgcaagacccaatggagt 84
Score = 65.9 bits (33), Expect = 6e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagtaaaacggc 336
||||||||| |||||| ||||||| ||||||||||||| |||||||||||| || |||
Sbjct: 242 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagtgaaggggc 183
Query: 337 aagag 341
|||||
Sbjct: 182 aagag 178
Score = 44.1 bits (22), Expect = 0.022
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 ggcaccttcataaatcaagtccagctacaa 166
||||||||||| |||||| |||||||||||
Sbjct: 318 ggcaccttcatgaatcaattccagctacaa 289
>gb|CD204829.1|CD204829 HS1_10_E08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_10_E08_A012 3', mRNA sequence
Length = 318
Score = 63.9 bits (32), Expect = 2e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 277 aagcaacagtaaatatgacattattacactagaatcacggagcgacaggagt 328
||||||||| |||||| ||||||| ||||||||||||| ||||||||||||
Sbjct: 63 aagcaacaggaaatataacattatcacactagaatcacaaagcgacaggagt 12
>gb|CW110903.1|CW110903 104_484_11103992_148_34526_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103992, DNA
sequence
Length = 389
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 813 aggcactttacatgaatggtatg 835
|||||||||||||||||||||||
Sbjct: 332 aggcactttacatgaatggtatg 310
>gb|BE599200.1|BE599200 PI1_86_F01.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 554
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 170 gcggcggcggcggcgcactgt 190
|||||||||||||||||||||
Sbjct: 86 gcggcggcggcggcgcactgt 66
>gb|CD227606.1|CD227606 CCC1_52_B01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_52_B01_A007 5', mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 ctcagcagccgccgccgccgt 248
|||||||||||||||||||||
Sbjct: 35 ctcagcagccgccgccgccgt 55
>gb|CD234485.1|CD234485 SS1_27_G02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_27_G02_A012 5', mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 170 gcggcggcggcggcgcactgt 190
|||||||||||||||||||||
Sbjct: 90 gcggcggcggcggcgcactgt 70
>gb|CN132189.1|CN132189 OX1_4_D04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_4_D04_A002 5', mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 170 gcggcggcggcggcgcactgt 190
|||||||||||||||||||||
Sbjct: 164 gcggcggcggcggcgcactgt 144
>gb|CN137947.1|CN137947 OX1_60_F11.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_60_F11_A002 5', mRNA sequence
Length = 780
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 170 gcggcggcggcggcgcactgt 190
|||||||||||||||||||||
Sbjct: 119 gcggcggcggcggcgcactgt 99
>gb|CN140022.1|CN140022 OX1_33_C04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_C04_A002 5', mRNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 170 gcggcggcggcggcgcactgt 190
|||||||||||||||||||||
Sbjct: 129 gcggcggcggcggcgcactgt 109
>gb|BZ341341.1|BZ341341 ic44g04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic44g04 5', DNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 162 tacaagctgcggcggcggcggcgc 185
||||||||||||||| ||||||||
Sbjct: 82 tacaagctgcggcggtggcggcgc 105
>gb|CL184981.1|CL184981 104_398_10899219_114_32366_004 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899219, DNA
sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 162 tacaagctgcggcggcggcggcgc 185
||||||||||||||| ||||||||
Sbjct: 45 tacaagctgcggcggtggcggcgc 68
>gb|CW048095.1|CW048095 104_286_10513102_114_30214 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513102, DNA
sequence
Length = 97
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 229 tcagcagccgccgccgccgt 248
||||||||||||||||||||
Sbjct: 40 tcagcagccgccgccgccgt 21
>gb|CW118192.1|CW118192 104_494_11108071_116_34682_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108071, DNA
sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 228 ctcagcagccgccgccgccg 247
||||||||||||||||||||
Sbjct: 309 ctcagcagccgccgccgccg 328
>gb|CW123487.1|CW123487 104_502_11111239_116_34687_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111239, DNA
sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 162 tacaagctgcggcggcggcggcgc 185
||||||||||||||| ||||||||
Sbjct: 153 tacaagctgcggcggtggcggcgc 130
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 468,969
Number of Sequences: 832831
Number of extensions: 468969
Number of successful extensions: 222673
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 222341
Number of HSP's gapped (non-prelim): 253
length of query: 880
length of database: 491,359,669
effective HSP length: 20
effective length of query: 860
effective length of database: 474,703,049
effective search space: 408244622140
effective search space used: 408244622140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)