BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.2
(798 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE358411.1|BE358411 DG1_29_C02.g1_A002 Dark Grown 1 (DG1... 458 e-127
gb|BF656911.1|BF656911 OV2_22_E11.g1_A002 Ovary 2 (OV2) Sor... 458 e-127
gb|BG323188.1|BG323188 EM1_15_H09.g1_A002 Embryo 1 (EM1) So... 458 e-127
gb|CD424232.1|CD424232 SA1_4_H05.b1_A002 Salicylic acid-tre... 458 e-127
gb|CD424847.1|CD424847 SA1_9_H04.b1_A002 Salicylic acid-tre... 458 e-127
gb|CF072326.1|CF072326 FE1_2_H07.b1_A002 Iron-deficient see... 394 e-108
gb|BG357415.1|BG357415 OV2_29_F03.g1_A002 Ovary 2 (OV2) Sor... 385 e-105
gb|BM327869.1|BM327869 PIC1_18_E04.g1_A002 Pathogen-infecte... 385 e-105
gb|BM331190.1|BM331190 PIC1_70_G09.g1_A002 Pathogen-infecte... 385 e-105
gb|CF072848.1|CF072848 FE1_26_E01.b1_A002 Iron-deficient se... 385 e-105
gb|DN552508.1|DN552508 pSHR-RT-A-H1_H01_C100 pSHR Sorghum h... 351 6e-095
gb|BI098064.1|BI098064 IP1_31_E11.g1_A002 Immature pannicle... 329 2e-088
gb|BF586222.1|BF586222 FM1_27_C04.b1_A003 Floral-Induced Me... 303 1e-080
gb|BG556485.1|BG556485 EM1_37_G04.g1_A002 Embryo 1 (EM1) So... 287 8e-076
gb|AW678004.1|AW678004 WS1_12_G12.g1_A002 Water-stressed 1 ... 260 2e-067
gb|CD232395.1|CD232395 SS1_45_A09.b1_A012 Salt-stressed see... 204 9e-051
gb|CW203726.1|CW203726 104_631_11186168_116_37062_024 Sorgh... 186 2e-045
gb|CW203727.1|CW203727 104_631_11186168_148_36906_024 Sorgh... 186 2e-045
gb|CW342782.1|CW342782 104_844_11487063_148_36178_052 Sorgh... 186 2e-045
gb|CW375130.1|CW375130 fsbb001f052f19f0 Sorghum methylation... 186 2e-045
gb|CW391258.1|CW391258 fsbb001f077f01f0 Sorghum methylation... 186 2e-045
gb|CW391259.1|CW391259 fsbb001f077f01k0 Sorghum methylation... 186 2e-045
gb|BG487902.1|BG487902 RHIZ2_60_G05.g1_A003 Rhizome2 (RHIZ2... 184 8e-045
gb|BG558740.1|BG558740 RHIZ2_59_H07.g1_A003 Rhizome2 (RHIZ2... 184 8e-045
gb|BQ656040.1|BQ656040 pRC0338 Sorghum halepense rhizome cD... 170 1e-040
gb|CF431297.1|CF431297 NIT1_5_G04.b1_A002 Nitrogen-deficien... 155 7e-036
gb|BG273345.1|BG273345 OV2_27_C04.g1_A002 Ovary 2 (OV2) Sor... 153 3e-035
gb|BG556693.1|BG556693 EM1_40_D05.g1_A002 Embryo 1 (EM1) So... 151 1e-034
gb|CW375131.1|CW375131 fsbb001f052f19k0 Sorghum methylation... 135 7e-030
gb|CW316446.1|CW316446 104_807_11472898_148_35847_033 Sorgh... 133 3e-029
gb|BG933148.1|BG933148 WS1_29_G10.b1_A002 Water-stressed 1 ... 123 3e-026
gb|CD234501.1|CD234501 SS1_27_C11.g1_A012 Salt-stressed see... 123 3e-026
gb|AW283933.1|AW283933 LG1_282_F07.g1_A002 Light Grown 1 (L... 119 4e-025
gb|CD463051.1|CD463051 ETH1_42_E06.b1_A002 Ethylene-treated... 115 6e-024
gb|CL183896.1|CL183896 104_396_10898479_114_31923_319 Sorgh... 105 6e-021
gb|AW677945.1|AW677945 WS1_12_G12.b1_A002 Water-stressed 1 ... 103 2e-020
gb|CW128898.1|CW128898 104_510_11114268_116_34757_036 Sorgh... 68 1e-009
gb|BI075496.1|BI075496 IP1_21_C05.g1_A002 Immature pannicle... 68 1e-009
gb|BI075633.1|BI075633 IP1_23_B05.g1_A002 Immature pannicle... 68 1e-009
gb|CW048319.1|CW048319 104_286_10513293_114_30214 Sorghum m... 66 5e-009
gb|CW199473.1|CW199473 104_624_11183529_116_37058_037 Sorgh... 64 2e-008
gb|CW199474.1|CW199474 104_624_11183529_148_36850_037 Sorgh... 64 2e-008
gb|CW360333.1|CW360333 fsbb001f028g01k0 Sorghum methylation... 64 2e-008
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 64 2e-008
gb|CN133913.1|CN133913 OX1_19_D01.b1_A002 Oxidatively-stres... 54 2e-005
gb|AW747589.1|AW747589 WS1_73_H02.g1_A002 Water-stressed 1 ... 46 0.005
gb|CW122925.1|CW122925 104_502_11110938_116_34690_079 Sorgh... 42 0.077
gb|CW230520.1|CW230520 104_679_11210602_116_37485_041 Sorgh... 42 0.077
gb|CW391719.1|CW391719 fsbb001f078a05k0 Sorghum methylation... 42 0.077
gb|CW392111.1|CW392111 fsbb001f078j07k0 Sorghum methylation... 42 0.077
gb|CW463623.1|CW463623 fsbb001f212f22k0 Sorghum methylation... 42 0.077
>gb|BE358411.1|BE358411 DG1_29_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 458 bits (231), Expect = e-127
Identities = 415/475 (87%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct: 92 acaatgatcaaacgtggaacccggatgctattgtcttcaactcctggcaacattacggaa 151
Query: 77 ctcctagctactggatgcagacnnttttccgnagagtcaaccgc-gccattgttcatccg 135
||||||| |||||||||||||| ||||||| ||||| | | ||||| | |||||
Sbjct: 152 ctcctagttactggatgcagacacttttccgt-gagtccagtggtgccatgatccatcca 210
Query: 136 gttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggat 195
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 211 attaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggac 270
Query: 196 gcagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctc 255
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| ||||
Sbjct: 271 tcagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctc 330
Query: 256 acggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtc 315
||| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| ||
Sbjct: 331 acgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgtt 390
Query: 316 ctcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccg 375
||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 391 ctcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccg 450
Query: 376 gtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcc 435
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 451 gtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactcc 510
Query: 436 ttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
|||||| | |||||||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 511 ttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagagatgtgat 565
>gb|BF656911.1|BF656911 OV2_22_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 458 bits (231), Expect = e-127
Identities = 415/475 (87%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct: 90 acaatgatcaaacgtggaacccggatgctattgtcttcaactcctggcaacattacggaa 149
Query: 77 ctcctagctactggatgcagacnnttttccgnagagtcaaccgc-gccattgttcatccg 135
||||||| |||||||||||||| ||||||| ||||| | | ||||| | |||||
Sbjct: 150 ctcctagttactggatgcagacacttttccgt-gagtccagtggtgccatgatccatcca 208
Query: 136 gttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggat 195
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 209 attaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggac 268
Query: 196 gcagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctc 255
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| ||||
Sbjct: 269 tcagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctc 328
Query: 256 acggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtc 315
||| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| ||
Sbjct: 329 acgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgtt 388
Query: 316 ctcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccg 375
||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 389 ctcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccg 448
Query: 376 gtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcc 435
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 449 gtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactcc 508
Query: 436 ttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
|||||| | |||||||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 509 ttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagagatgtgat 563
>gb|BG323188.1|BG323188 EM1_15_H09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 458 bits (231), Expect = e-127
Identities = 415/475 (87%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct: 91 acaatgatcaaacgtggaacccggatgctattgtcttcaactcctggcaacattacggaa 150
Query: 77 ctcctagctactggatgcagacnnttttccgnagagtcaaccgc-gccattgttcatccg 135
||||||| |||||||||||||| ||||||| ||||| | | ||||| | |||||
Sbjct: 151 ctcctagttactggatgcagacacttttccgt-gagtccagtggtgccatgatccatcca 209
Query: 136 gttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggat 195
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 210 attaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggac 269
Query: 196 gcagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctc 255
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| ||||
Sbjct: 270 tcagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctc 329
Query: 256 acggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtc 315
||| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| ||
Sbjct: 330 acgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgtt 389
Query: 316 ctcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccg 375
||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 390 ctcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccg 449
Query: 376 gtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcc 435
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 450 gtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactcc 509
Query: 436 ttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
|||||| | |||||||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 510 ttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagagatgtgat 564
>gb|CD424232.1|CD424232 SA1_4_H05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 3', mRNA sequence
Length = 632
Score = 458 bits (231), Expect = e-127
Identities = 415/475 (87%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct: 55 acaatgatcaaacgtggaacccggatgctattgtcttcaactcctggcaacattacggaa 114
Query: 77 ctcctagctactggatgcagacnnttttccgnagagtcaaccgc-gccattgttcatccg 135
||||||| |||||||||||||| ||||||| ||||| | | ||||| | |||||
Sbjct: 115 ctcctagttactggatgcagacacttttccgt-gagtccagtggtgccatgatccatcca 173
Query: 136 gttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggat 195
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 174 attaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggac 233
Query: 196 gcagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctc 255
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| ||||
Sbjct: 234 tcagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctc 293
Query: 256 acggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtc 315
||| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| ||
Sbjct: 294 acgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgtt 353
Query: 316 ctcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccg 375
||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 354 ctcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccg 413
Query: 376 gtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcc 435
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 414 gtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactcc 473
Query: 436 ttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
|||||| | |||||||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 474 ttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagagatgtgat 528
>gb|CD424847.1|CD424847 SA1_9_H04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 3', mRNA sequence
Length = 664
Score = 458 bits (231), Expect = e-127
Identities = 415/475 (87%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct: 94 acaatgatcaaacgtggaacccggatgctattgtcttcaactcctggcaacattacggaa 153
Query: 77 ctcctagctactggatgcagacnnttttccgnagagtcaaccgc-gccattgttcatccg 135
||||||| |||||||||||||| ||||||| ||||| | | ||||| | |||||
Sbjct: 154 ctcctagttactggatgcagacacttttccgt-gagtccagtggtgccatgatccatcca 212
Query: 136 gttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggat 195
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 213 attaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggac 272
Query: 196 gcagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctc 255
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| ||||
Sbjct: 273 tcagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctc 332
Query: 256 acggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtc 315
||| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| ||
Sbjct: 333 acgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgtt 392
Query: 316 ctcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccg 375
||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 393 ctcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccg 452
Query: 376 gtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcc 435
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 453 gtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactcc 512
Query: 436 ttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
|||||| | |||||||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 513 ttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagagatgtgat 567
>gb|CF072326.1|CF072326 FE1_2_H07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_H07_A002 3', mRNA sequence
Length = 544
Score = 394 bits (199), Expect = e-108
Identities = 380/439 (86%), Gaps = 2/439 (0%)
Strand = Plus / Plus
Query: 53 tcaactcctggcaacactatggnactcctagctactggatgcagacnnttttccgnagag 112
|||||||||||||||| || || |||||||| |||||||||||||| ||||||| |||
Sbjct: 1 tcaactcctggcaacattacggaactcctagttactggatgcagacacttttccgt-gag 59
Query: 113 tcaaccgc-gccattgttcatccggttaatatcagttcccggtactcgagttcgctggcc 171
|| | | ||||| | ||||| ||||||| |||||||||||||| || ||||| ||
Sbjct: 60 tccagtggtgccatgatccatccaattaatatgagttcccggtactcaagctcgctagct 119
Query: 172 gcgtctgcgatcacgtggcaggatgcagagaatagcttcctgagagtgaaggtcgtgaac 231
|| | ||| || ||||||||||| |||||||||||||||| ||||| ||||| || |||
Sbjct: 120 gcatttgcaattacgtggcaggactcagagaatagcttccttagagtaaaggttgtaaac 179
Query: 232 ttcgggtcggacaccgttaacctcacggtctccacgagcggactcggggccagcgtcaac 291
|| ||||||||||| |||| ||||||| ||||||| || ||||| |||||| ||||||
Sbjct: 180 tttgggtcggacactgttagcctcacgatctccacaagtggacttcaggccagtgtcaac 239
Query: 292 gcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaactccttc 351
||||||||||||||||||| || ||||| ||||||||||| ||||| |||||||| |||
Sbjct: 240 tcgctgggatcaaccgccactgttctcacatctggcaacgttatggatgagaactctttc 299
Query: 352 agtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatg 411
|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 300 agtaacccaaacaaggttgcgccggtgaaaagccagctgagcaacgctggggagcagatg 359
Query: 412 caggtcacgctggctcctcactccttcaccgccttcgatctggcgctggctgagcccaag 471
|||||||||||||||||||||||||||||| | |||||||||||||||||| || |||||
Sbjct: 360 caggtcacgctggctcctcactccttcaccacgttcgatctggcgctggctcagtccaag 419
Query: 472 cttgtggcggagatatgat 490
|||||||| ||||| ||||
Sbjct: 420 cttgtggcagagatgtgat 438
>gb|BG357415.1|BG357415 OV2_29_F03.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 529
Score = 385 bits (194), Expect = e-105
Identities = 314/354 (88%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 74 ttaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggact 133
Query: 197 cagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctca 256
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| |||||
Sbjct: 134 cagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctca 193
Query: 257 cggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcc 316
|| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| || |
Sbjct: 194 cgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgttc 253
Query: 317 tcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccgg 376
|||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 254 tcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccgg 313
Query: 377 tgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcct 436
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 314 tgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactcct 373
Query: 437 tcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
||||| | |||||||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 374 tcaccacgttcgatctggcgctggctcagtccaagcttgtggcagagatgtgat 427
>gb|BM327869.1|BM327869 PIC1_18_E04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 551
Score = 385 bits (194), Expect = e-105
Identities = 372/430 (86%), Gaps = 2/430 (0%)
Strand = Plus / Plus
Query: 62 ggcaacactatggnactcctagctactggatgcagacnnttttccgnagagt-caaccgc 120
||||||| || || |||||||| |||||||||||||| ||||||| |||| || |
Sbjct: 1 ggcaacattacggaactcctagttactggatgcagacacttttccgt-gagtccagtggt 59
Query: 121 gccattgttcatccggttaatatcagttcccggtactcgagttcgctggccgcgtctgcg 180
||||| | ||||| ||||||| |||||||||||||| || ||||| || || |||||
Sbjct: 60 gccatgatccatccaattaatatgagttcccggtactcaagctcgctagctgcatctgca 119
Query: 181 atcacgtggcaggatgcagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcg 240
|| ||||||||||| |||||||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 120 attacgtggcaggactcagagaatagcttccttagagtaaaggttgtaaactttgggtcg 179
Query: 241 gacaccgttaacctcacggtctccacgagcggactcggggccagcgtcaacgcgctggga 300
||||| |||| ||||||| ||||||| || ||||| |||||| |||||| ||||||||
Sbjct: 180 gacactgttagcctcacgatctccacaagtggacttcaggccagtgtcaactcgctggga 239
Query: 301 tcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaactccttcagtaacccg 360
||||||||||| || ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 240 tcaaccgccactgttctcacatctggcaacgttatggatgagaactctttcagtaaccca 299
Query: 361 aacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacg 420
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 300 aacaaggttgcgccggtgaaaagccagctgagcaacgctggggagcagatgcaggtcacg 359
Query: 421 ctggctcctcactccttcaccgccttcgatctggcgctggctgagcccaagcttgtggcg 480
||||||||||||||||||||| | |||||||||||||||||| || |||||||||||||
Sbjct: 360 ctggctcctcactccttcaccacgttcgatctggcgctggctcagtccaagcttgtggca 419
Query: 481 gagatatgat 490
||||| ||||
Sbjct: 420 gagatgtgat 429
>gb|BM331190.1|BM331190 PIC1_70_G09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 627
Score = 385 bits (194), Expect = e-105
Identities = 314/354 (88%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 51 ttaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggact 110
Query: 197 cagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctca 256
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| |||||
Sbjct: 111 cagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctca 170
Query: 257 cggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcc 316
|| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| || |
Sbjct: 171 cgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgttc 230
Query: 317 tcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccgg 376
|||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 231 tcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccgg 290
Query: 377 tgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcct 436
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 291 tgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactcct 350
Query: 437 tcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
||||| | |||||||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 351 tcaccacgttcgatctggcgctggctcagtccaagcttgtggcagagatgtgat 404
>gb|CF072848.1|CF072848 FE1_26_E01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_26_E01_A002 3', mRNA sequence
Length = 514
Score = 385 bits (194), Expect = e-105
Identities = 314/354 (88%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 56 ttaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggact 115
Query: 197 cagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctca 256
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| |||||
Sbjct: 116 cagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctca 175
Query: 257 cggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcc 316
|| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| || |
Sbjct: 176 cgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgttc 235
Query: 317 tcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccgg 376
|||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 236 tcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccgg 295
Query: 377 tgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcct 436
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 296 tgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactcct 355
Query: 437 tcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
||||| | |||||||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 356 tcaccacgttcgatctggcgctggctcagtccaagcttgtggcagagatgtgat 409
>gb|DN552508.1|DN552508 pSHR-RT-A-H1_H01_C100 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 484
Score = 351 bits (177), Expect = 6e-095
Identities = 300/341 (87%)
Strand = Plus / Plus
Query: 150 ccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagagaatagctt 209
||||||||| || ||||| || || ||||| || ||||||||||| |||||||||||||
Sbjct: 6 ccggtactcaagctcgctagctgcatctgcaattacgtggcaggactcagagaatagctt 65
Query: 210 cctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtctccacgag 269
||| ||||| ||||| || ||||| ||||||||||| |||| |||||| ||||||| ||
Sbjct: 66 ccttagagtaaaggttgtaaactttgggtcggacactgttagcctcaccatctccacaag 125
Query: 270 cggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacgtctggcaa 329
||||| |||||| |||||| |||| |||||||||||||| || ||||| ||||||||
Sbjct: 126 tggacttcaggccagtgtcaactcgcttggatcaaccgccactgttctcacatctggcaa 185
Query: 330 cgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaaagccagct 389
||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 186 cgttatggatgagaactctttcagtaacccaaacaaggttgcgccggtgaaaagccagct 245
Query: 390 gagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcaccgccttcga 449
||||||||| | |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 246 gagcaacgctggggagcagatgcaggtcacgctggctcctcactccttcaccacgttcga 305
Query: 450 tctggcgctggctgagcccaagcttgtggcggagatatgat 490
||||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 306 tctggcgctggctcagtccaagcttgtggcagagatgtgat 346
>gb|BI098064.1|BI098064 IP1_31_E11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 329 bits (166), Expect = 2e-088
Identities = 307/354 (86%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || | ||| || |||||||||||
Sbjct: 19 ttaatatgagttcccggtactcaagctcgctagctgcatttgcaattacgtggcaggact 78
Query: 197 cagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctca 256
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| |||||
Sbjct: 79 cagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctca 138
Query: 257 cggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcc 316
|| | ||||| || ||||| |||||| |||||| ||||||||||||||||||| ||
Sbjct: 139 cgatttccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgttt 198
Query: 317 tcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccgg 376
|||| | ||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 199 tcacatttggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccgg 258
Query: 377 tgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcct 436
|||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 259 tgaaaagccagctgagcaacgctggggagcagatgcaggtcacggtggctcctcactcct 318
Query: 437 tcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
||||| | || ||| ||||||||||| || ||||||||||||| ||||| ||||
Sbjct: 319 tcaccacgtttgatttggcgctggctcagtccaagcttgtggcagagatgtgat 372
>gb|BF586222.1|BF586222 FM1_27_C04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 404
Score = 303 bits (153), Expect = 1e-080
Identities = 243/273 (89%)
Strand = Plus / Minus
Query: 207 cttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtctccac 266
|||||| ||||| ||||| || ||||| ||||||||||| |||| ||||||| |||||||
Sbjct: 404 cttccttagagtaaaggttgtaaactttgggtcggacactgttagcctcacgatctccac 345
Query: 267 gagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacgtctgg 326
|| ||||| |||||| |||||| |||| |||||||||||||| || ||||| |||||
Sbjct: 344 aagtggacttcaggccagtgtcaactcgcttggatcaaccgccactgttctcacatctgg 285
Query: 327 caacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaaagcca 386
|||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 284 caacgttatggatgagaactctttcagtaacccaaacaaggttgcgccggtgaaaagcca 225
Query: 387 gctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcaccgcctt 446
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 224 gctgagcaacgctggggagcagatgcaggtcacactggctcctcactccttcaccacgtt 165
Query: 447 cgatctggcgctggctgagcccaagcttgtggc 479
|||||||||||||||| || |||||||||||||
Sbjct: 164 cgatctggcgctggctcagtccaagcttgtggc 132
>gb|BG556485.1|BG556485 EM1_37_G04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 337
Score = 287 bits (145), Expect = 8e-076
Identities = 247/281 (87%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 57 ttaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggact 116
Query: 197 cagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctca 256
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| |||||
Sbjct: 117 cagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctca 176
Query: 257 cggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcc 316
|| ||||||| || ||||| |||||| |||||| ||||||||||||||||||| || |
Sbjct: 177 cgatctccacaagtggacttcaggccagtgtcaactcgctgggatcaaccgccactgttc 236
Query: 317 tcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccgg 376
|||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 237 tcacatctggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcgccgg 296
Query: 377 tgaaaagccagctgagcaacgccgcggagcagatgcaggtc 417
|||||||||||||||||||||| | ||||||||||||||||
Sbjct: 297 tgaaaagccagctgagcaacgctggggagcagatgcaggtc 337
>gb|AW678004.1|AW678004 WS1_12_G12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 394
Score = 260 bits (131), Expect = 2e-067
Identities = 236/271 (87%)
Strand = Plus / Plus
Query: 209 tcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtctccacga 268
|||| ||||| ||||| || ||||| ||||||||||| |||| ||||||| ||||| | |
Sbjct: 1 tccttagagtaaaggttgtaaactttgggtcggacactgttagcctcacgatctccccaa 60
Query: 269 gcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacgtctggca 328
| ||||| |||||| |||||| ||||||||||||||||||| || |||| | |||||
Sbjct: 61 gtggacttcaggccagtgtcaactcgctgggatcaaccgccactgttttcacatttggca 120
Query: 329 acgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaaagccagc 388
|||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 acgttatggatgagaactttttcagtaacccaaacaaggttgcgccggtgaaaagccagc 180
Query: 389 tgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcaccgccttcg 448
|||||||||| | |||||| ||||||||||||||||||||||||||||||||| | || |
Sbjct: 181 tgagcaacgctggggagcaaatgcaggtcacgctggctcctcactccttcaccacgtttg 240
Query: 449 atctggcgctggctgagcccaagcttgtggc 479
|| ||||||||||| || |||||||||||||
Sbjct: 241 atttggcgctggctcagtccaagcttgtggc 271
>gb|CD232395.1|CD232395 SS1_45_A09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 3', mRNA sequence
Length = 272
Score = 204 bits (103), Expect = 9e-051
Identities = 151/167 (90%)
Strand = Plus / Plus
Query: 324 tggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaaag 383
||||||||| ||||| |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 12 tggcaacgttatggatgagaactctttcagtaacccaaacaaggttgcaccggtgaaaag 71
Query: 384 ccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcaccgc 443
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 72 ccagctgagcaacgctggggagcagatgcaggtcacgctggctcctcactccttcaccac 131
Query: 444 cttcgatctggcgctggctgagcccaagcttgtggcggagatatgat 490
|| ||| ||||||||||| || |||| |||||||| ||||| ||||
Sbjct: 132 gttggatttggcgctggctcagtccaatcttgtggcagagatgtgat 178
>gb|CW203726.1|CW203726 104_631_11186168_116_37062_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186168, DNA
sequence
Length = 652
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Minus
Query: 365 aggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctgg 424
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 649 aggttgcgccggtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctgg 590
Query: 425 ctcctcactccttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggaga 484
||||||||||||||||| | |||||||||||||||||| || ||||||||||||| ||||
Sbjct: 589 ctcctcactccttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagaga 530
Query: 485 tatgat 490
| ||||
Sbjct: 529 tgtgat 524
>gb|CW203727.1|CW203727 104_631_11186168_148_36906_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186168, DNA
sequence
Length = 663
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Plus
Query: 365 aggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctgg 424
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 462 aggttgcgccggtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctgg 521
Query: 425 ctcctcactccttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggaga 484
||||||||||||||||| | |||||||||||||||||| || ||||||||||||| ||||
Sbjct: 522 ctcctcactccttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagaga 581
Query: 485 tatgat 490
| ||||
Sbjct: 582 tgtgat 587
Score = 135 bits (68), Expect = 7e-030
Identities = 122/140 (87%)
Strand = Plus / Plus
Query: 229 aacttcgggtcggacaccgttaacctcacggtctccacgagcggactcggggccagcgtc 288
||||| ||||||||||| |||| ||||||| ||||||| || ||||| |||||| |||
Sbjct: 206 aactttgggtcggacactgttagcctcacgatctccacaagtggacttcaggccagtgtc 265
Query: 289 aacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaactcc 348
||| ||||||||||||||||||| || ||||| ||||||||||| ||||| ||||||||
Sbjct: 266 aactcgctgggatcaaccgccactgttctcacatctggcaacgttatggatgagaactct 325
Query: 349 ttcagtaacccgaacaaggt 368
||||||||||| ||||||||
Sbjct: 326 ttcagtaacccaaacaaggt 345
Score = 77.8 bits (39), Expect = 1e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 4 ttaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggact 63
Query: 197 cagagaatagcttcctgagagtgaagg 223
|||||||||||||||| ||||| ||||
Sbjct: 64 cagagaatagcttccttagagtaaagg 90
>gb|CW342782.1|CW342782 104_844_11487063_148_36178_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487063, DNA
sequence
Length = 706
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Plus
Query: 365 aggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctgg 424
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 94 aggttgcgccggtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctgg 153
Query: 425 ctcctcactccttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggaga 484
||||||||||||||||| | |||||||||||||||||| || ||||||||||||| ||||
Sbjct: 154 ctcctcactccttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagaga 213
Query: 485 tatgat 490
| ||||
Sbjct: 214 tgtgat 219
>gb|CW375130.1|CW375130 fsbb001f052f19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f052f19, DNA
sequence
Length = 831
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Minus
Query: 365 aggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctgg 424
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 724 aggttgcgccggtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctgg 665
Query: 425 ctcctcactccttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggaga 484
||||||||||||||||| | |||||||||||||||||| || ||||||||||||| ||||
Sbjct: 664 ctcctcactccttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagaga 605
Query: 485 tatgat 490
| ||||
Sbjct: 604 tgtgat 599
>gb|CW391258.1|CW391258 fsbb001f077f01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077f01, DNA
sequence
Length = 660
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Plus
Query: 365 aggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctgg 424
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 478 aggttgcgccggtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctgg 537
Query: 425 ctcctcactccttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggaga 484
||||||||||||||||| | |||||||||||||||||| || ||||||||||||| ||||
Sbjct: 538 ctcctcactccttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagaga 597
Query: 485 tatgat 490
| ||||
Sbjct: 598 tgtgat 603
Score = 135 bits (68), Expect = 7e-030
Identities = 122/140 (87%)
Strand = Plus / Plus
Query: 229 aacttcgggtcggacaccgttaacctcacggtctccacgagcggactcggggccagcgtc 288
||||| ||||||||||| |||| ||||||| ||||||| || ||||| |||||| |||
Sbjct: 222 aactttgggtcggacactgttagcctcacgatctccacaagtggacttcaggccagtgtc 281
Query: 289 aacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaactcc 348
||| ||||||||||||||||||| || ||||| ||||||||||| ||||| ||||||||
Sbjct: 282 aactcgctgggatcaaccgccactgttctcacatctggcaacgttatggatgagaactct 341
Query: 349 ttcagtaacccgaacaaggt 368
||||||||||| ||||||||
Sbjct: 342 ttcagtaacccaaacaaggt 361
Score = 77.8 bits (39), Expect = 1e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 20 ttaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggact 79
Query: 197 cagagaatagcttcctgagagtgaagg 223
|||||||||||||||| ||||| ||||
Sbjct: 80 cagagaatagcttccttagagtaaagg 106
>gb|CW391259.1|CW391259 fsbb001f077f01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077f01, DNA
sequence
Length = 564
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Minus
Query: 365 aggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctgg 424
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 427 aggttgcgccggtgaaaagccagctgagcaacgctggggagcagatgcaggtcacgctgg 368
Query: 425 ctcctcactccttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggaga 484
||||||||||||||||| | |||||||||||||||||| || ||||||||||||| ||||
Sbjct: 367 ctcctcactccttcaccacgttcgatctggcgctggctcagtccaagcttgtggcagaga 308
Query: 485 tatgat 490
| ||||
Sbjct: 307 tgtgat 302
>gb|BG487902.1|BG487902 RHIZ2_60_G05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 184 bits (93), Expect = 8e-045
Identities = 267/325 (82%)
Strand = Plus / Plus
Query: 161 gttcgctggccgcgtctgcgatcacgtggcaggatgcagagaatagcttcctgagagtga 220
||||||| || ||||||||||| || |||||||| ||||||| |||||||| ||||| |
Sbjct: 150 gttcgctcgcagcgtctgcgattacttggcaggactcagagaacagcttccttagagtaa 209
Query: 221 aggtcgtgaacttcgggtcggacaccgttaacctcacggtctccacgagcggactcgggg 280
||||| | ||||| ||||| || | || | ||| || |||||||||| |||||| ||
Sbjct: 210 aggtcataaactttgggtcagatgctgtgaccctgacaatctccacgagtggactccagg 269
Query: 281 ccagcgtcaacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacg 340
|||| ||||||| ||||||||||||||||| || ||||| || | ||||| ||||| |
Sbjct: 270 ccagtatcaacgctctgggatcaaccgccactgttctcacatcagcaaacgtgatggatg 329
Query: 341 agaactccttcagtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccg 400
| || |||||||||||||| | |||||||| ||||||||| ||| | ||||||| || |
Sbjct: 330 aaaattccttcagtaacccaaccaaggttgtgccggtgaagagcgatatgagcaatgctg 389
Query: 401 cggagcagatgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctgg 460
| |||||||||||||||||| |||||||||||||||||| | | |||||||| || ||||
Sbjct: 390 cagagcagatgcaggtcacgttggctcctcactccttcagctcgttcgatctcgccctgg 449
Query: 461 ctgagcccaagcttgtggcggagat 485
|| || |||| ||||| || |||||
Sbjct: 450 ctcagtccaaacttgtcgccgagat 474
Score = 113 bits (57), Expect = 3e-023
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 18 caatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggnac 77
||||||||||||||||||||| |||||||| ||||||||||||||||| || || || ||
Sbjct: 7 caatgaccaaacgtggaacccagacgctatcgtcttcaactcctggcagcattacggcac 66
Query: 78 tcctagctactggatgcagacnnttttccg 107
|||||| |||||||||||||| |||||||
Sbjct: 67 tcctagttactggatgcagacgcttttccg 96
>gb|BG558740.1|BG558740 RHIZ2_59_H07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 184 bits (93), Expect = 8e-045
Identities = 267/325 (82%)
Strand = Plus / Plus
Query: 161 gttcgctggccgcgtctgcgatcacgtggcaggatgcagagaatagcttcctgagagtga 220
||||||| || ||||||||||| || |||||||| ||||||| |||||||| ||||| |
Sbjct: 90 gttcgctcgcagcgtctgcgattacttggcaggactcagagaacagcttccttagagtaa 149
Query: 221 aggtcgtgaacttcgggtcggacaccgttaacctcacggtctccacgagcggactcgggg 280
||||| | ||||| ||||| || | || | ||| || |||||||||| |||||| ||
Sbjct: 150 aggtcataaactttgggtcagatgctgtgaccctgacaatctccacgagtggactccagg 209
Query: 281 ccagcgtcaacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacg 340
|||| ||||||| ||||||||||||||||| || ||||| || | ||||| ||||| |
Sbjct: 210 ccagtatcaacgctctgggatcaaccgccactgttctcacatcagcaaacgtgatggatg 269
Query: 341 agaactccttcagtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccg 400
| || |||||||||||||| | |||||||| ||||||||| ||| | ||||||| || |
Sbjct: 270 aaaattccttcagtaacccaaccaaggttgtgccggtgaagagcgatatgagcaatgctg 329
Query: 401 cggagcagatgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctgg 460
| |||||||||||||||||| |||||||||||||||||| | | |||||||| || ||||
Sbjct: 330 cagagcagatgcaggtcacgttggctcctcactccttcagctcgttcgatctcgccctgg 389
Query: 461 ctgagcccaagcttgtggcggagat 485
|| || |||| ||||| || |||||
Sbjct: 390 ctcagtccaaacttgtcgccgagat 414
Score = 44.1 bits (22), Expect = 0.020
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 76 actcctagctactggatgcagacnnttttccg 107
|||||||| |||||||||||||| |||||||
Sbjct: 5 actcctagttactggatgcagacgcttttccg 36
>gb|BQ656040.1|BQ656040 pRC0338 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0338, mRNA sequence
Length = 487
Score = 170 bits (86), Expect = 1e-040
Identities = 257/314 (81%)
Strand = Plus / Plus
Query: 172 gcgtctgcgatcacgtggcaggatgcagagaatagcttcctgagagtgaaggtcgtgaac 231
||||||||||| || |||||||| ||||||| |||||||| ||||| |||||| | |||
Sbjct: 83 gcgtctgcgattacttggcaggactcagagaacagcttccttagagtaaaggtcataaac 142
Query: 232 ttcgggtcggacaccgttaacctcacggtctccacgagcggactcggggccagcgtcaac 291
|| ||||| || | || | ||| || ||||||||| |||||| |||||| |||||
Sbjct: 143 tttgggtcagatgctgtgaccctgacaatctccacgactggactccaggccagtatcaac 202
Query: 292 gcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaactccttc 351
|| ||||||||||||||||| || ||||| || | ||||| ||||| || || ||||||
Sbjct: 203 gctctgggatcaaccgccactgttctcacatcagcaaacgtgatggatgaaaattccttc 262
Query: 352 agtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatg 411
|||||||| | |||||||| ||||||||| ||| | ||||||| || || |||||||||
Sbjct: 263 agtaacccaaccaaggttgtgccggtgaagagcgatatgagcaatgctgcagagcagatg 322
Query: 412 caggtcacgctggctcctcactccttcaccgccttcgatctggcgctggctgagcccaag 471
||||||||| |||||||||||||||||| | | |||||||| || |||||| || ||||
Sbjct: 323 caggtcacgttggctcctcactccttcagctcgttcgatctcgccctggctcagtccaaa 382
Query: 472 cttgtggcggagat 485
||||| || |||||
Sbjct: 383 cttgtcgccgagat 396
>gb|CF431297.1|CF431297 NIT1_5_G04.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_G04_A002 3', mRNA sequence
Length = 503
Score = 155 bits (78), Expect = 7e-036
Identities = 243/298 (81%)
Strand = Plus / Plus
Query: 188 ggcaggatgcagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccg 247
||||||| ||||||| |||||||| ||||| |||||| | ||||| ||||| || | |
Sbjct: 1 ggcaggactcagagaacagcttccttagagtaaaggtcataaactttgggtcagatgctg 60
Query: 248 ttaacctcacggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccg 307
| | ||| || ||||||||| |||||| |||||| ||||||| |||||||||||||
Sbjct: 61 tgaccctgacaatctccacgactggactccaggccagtatcaacgctctgggatcaaccg 120
Query: 308 ccaccgtcctcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaagg 367
|||| || ||||| || | ||||| ||||| || || |||||||||||||| | |||||
Sbjct: 121 ccactgttctcacatcagcaaacgtgatggatgaaaattccttcagtaacccaaccaagg 180
Query: 368 ttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctc 427
||| ||||||||| ||| | ||||||| || || |||||||||||||||||| ||||||
Sbjct: 181 ttgtgccggtgaagagcgatatgagcaatgctgcagagcagatgcaggtcacgttggctc 240
Query: 428 ctcactccttcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
|||||||||||| | | |||||||| || |||||| || |||| ||||| || |||||
Sbjct: 241 ctcactccttcagctcgttcgatctcgccctggctcagtccaaacttgtcgccgagat 298
>gb|BG273345.1|BG273345 OV2_27_C04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 153 bits (77), Expect = 3e-035
Identities = 236/289 (81%)
Strand = Plus / Plus
Query: 197 cagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctca 256
||||||| |||||||| ||||| |||||| | ||||| ||||| || | || | ||| |
Sbjct: 1 cagagaacagcttccttagagtaaaggtcataaactttgggtcagatgctgtgaccctga 60
Query: 257 cggtctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcc 316
| ||||||||| |||||| |||||| ||||||| ||||||||||||||||| || |
Sbjct: 61 caatctccacgactggactccaggccagtatcaacgctctgggatcaaccgccactgttc 120
Query: 317 tcacgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccgg 376
|||| || | ||||| ||||| || || |||||||||||||| | |||||||| |||||
Sbjct: 121 tcacatcagcaaacgtgatggatgaaaattccttcagtaacccaaccaaggttgtgccgg 180
Query: 377 tgaaaagccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactcct 436
|||| ||| | ||||||| || || |||||||||||||||||| |||||||||||||||
Sbjct: 181 tgaagagcgatatgagcaatgctgcagagcagatgcaggtcacgttggctcctcactcct 240
Query: 437 tcaccgccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
||| | | |||||||| || |||||| || |||| ||||| || |||||
Sbjct: 241 tcagctcgttcgatctcgccctggctcagtccaaacttgtcgccgagat 289
>gb|BG556693.1|BG556693 EM1_40_D05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 191
Score = 151 bits (76), Expect = 1e-034
Identities = 139/160 (86%)
Strand = Plus / Plus
Query: 235 gggtcggacaccgttaacctcacggtctccacgagcggactcggggccagcgtcaacgcg 294
||||||||| | |||| ||||||| ||||||| || ||||| |||||| |||||| ||
Sbjct: 32 gggtcggaccctgttagcctcacgatctccacaagtggacttcaggccagtgtcaactcg 91
Query: 295 ctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaactccttcagt 354
||||||||||||||||| || ||||| ||||||| ||| ||||| |||| ||| ||||||
Sbjct: 92 ctgggatcaaccgccactgttctcacatctggcaccgttatggatgagacctctttcagt 151
Query: 355 aacccgaacaaggttgcgccggtgaaaagccagctgagca 394
||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 152 aacccaaacaaggttgcgccggtgaaaagccagatgagca 191
>gb|CW375131.1|CW375131 fsbb001f052f19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f052f19, DNA
sequence
Length = 557
Score = 135 bits (68), Expect = 7e-030
Identities = 122/140 (87%)
Strand = Plus / Plus
Query: 229 aacttcgggtcggacaccgttaacctcacggtctccacgagcggactcggggccagcgtc 288
||||| ||||||||||| |||| ||||||| ||||||| || ||||| |||||| |||
Sbjct: 248 aactttgggtcggacactgttagcctcacgatctccacaagtggacttcaggccagtgtc 307
Query: 289 aacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaactcc 348
||| ||||||||||||||||||| || ||||| ||||||||||| ||||| ||||||||
Sbjct: 308 aactcgctgggatcaaccgccactgttctcacatctggcaacgttatggatgagaactct 367
Query: 349 ttcagtaacccgaacaaggt 368
||||||||||| ||||||||
Sbjct: 368 ttcagtaacccaaacaaggt 387
Score = 77.8 bits (39), Expect = 1e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || ||||| || |||||||||||
Sbjct: 46 ttaatatgagttcccggtactcaagctcgctagctgcatctgcaattacgtggcaggact 105
Query: 197 cagagaatagcttcctgagagtgaagg 223
|||||||||||||||| ||||| ||||
Sbjct: 106 cagagaatagcttccttagagtaaagg 132
Score = 60.0 bits (30), Expect = 3e-007
Identities = 50/54 (92%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 365 aggttgcgc-cggtgaaaagccagctgagcaacgc-cgcggagcagatgcaggt 416
||||||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 504 aggttgcgcacggtgaaaagccagctgagcaacgctgggggagcagatgcaggt 557
>gb|CW316446.1|CW316446 104_807_11472898_148_35847_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472898, DNA
sequence
Length = 646
Score = 133 bits (67), Expect = 3e-029
Identities = 164/195 (84%), Gaps = 2/195 (1%)
Strand = Plus / Minus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| |||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 412 gtggaacccggatgctattgtcttcaactcctggcaacattacggaactcctagttactg 353
Query: 90 gatgcagacnnttttccgnagagt-caaccgcgccattgttcatccggttaatatcagtt 148
||||||||| ||||||| |||| || | ||||| | ||||| ||||||| ||||
Sbjct: 352 gatgcagacacttttccgt-gagtccagtggtgccatgatccatccaattaatatgagtt 294
Query: 149 cccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagagaatagct 208
|||||||||| || ||||| || || ||||| || ||||||||||| ||||||||||||
Sbjct: 293 cccggtactcaagctcgctagctgcatctgcaattacgtggcaggactcagagaatagct 234
Query: 209 tcctgagagtgaagg 223
|||| ||||| ||||
Sbjct: 233 tccttagagtaaagg 219
Score = 93.7 bits (47), Expect = 2e-017
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 229 aacttcgggtcggacaccgttaacctcacggtctccacgagcggactcggggccagcgtc 288
||||| ||||||||||| |||| ||||||| ||||||| || ||||| |||||| |||
Sbjct: 103 aactttgggtcggacactgttagcctcacgatctccacaagtggacttcaggccagtgtc 44
Query: 289 aacgcgctgggatcaaccgccaccgtcctcacgtctggcaacg 331
||| ||||||||||||||||||| || ||||| ||||||||||
Sbjct: 43 aactcgctgggatcaaccgccactgttctcacatctggcaacg 1
>gb|BG933148.1|BG933148 WS1_29_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 123 bits (62), Expect = 3e-026
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct: 453 acaatgatcaaacgtggaacccggatgctattgtcttcaactcctggcaacattacggaa 512
Query: 77 ctcctagctactggatgcagacnnttttccg 107
||||||| |||||||||||||| |||||||
Sbjct: 513 ctcctagttactggatgcagacacttttccg 543
>gb|CD234501.1|CD234501 SS1_27_C11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_27_C11_A012 5', mRNA sequence
Length = 673
Score = 123 bits (62), Expect = 3e-026
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct: 511 acaatgatcaaacgtggaacccggatgctattgtcttcaactcctggcaacattacggaa 570
Query: 77 ctcctagctactggatgcagacnnttttccg 107
||||||| |||||||||||||| |||||||
Sbjct: 571 ctcctagttactggatgcagacacttttccg 601
>gb|AW283933.1|AW283933 LG1_282_F07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 220
Score = 119 bits (60), Expect = 4e-025
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 407 agatgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctggctgagc 466
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct: 1 agatgcaggtcacgctggctcctcactccttcaccacgttcgatctggcgctggctcagt 60
Query: 467 ccaagcttgtggcggagatatgat 490
||||||||||||| ||||| ||||
Sbjct: 61 ccaagcttgtggcagagatgtgat 84
>gb|CD463051.1|CD463051 ETH1_42_E06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_E06_A002 3', mRNA sequence
Length = 418
Score = 115 bits (58), Expect = 6e-024
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || |
Sbjct: 55 acaatgatcaaacgtggaacccggatgctattgttttcaactcctggcaacattacggaa 114
Query: 77 ctcctagctactggatgcagacnnttttccg 107
||||||| |||||||||||||| |||||||
Sbjct: 115 ctcctagttactggatgcagacacttttccg 145
Score = 95.6 bits (48), Expect = 6e-018
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 137 ttaatatcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatg 196
||||||| |||||||||||||| || ||||| || || | ||| || |||||||||||
Sbjct: 175 ttaatatgagttcccggtactcaagctcgctagctgcatttgcaattacgtggcaggact 234
Query: 197 cagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctca 256
|||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| |||||
Sbjct: 235 cagagaatagcttccttagagtaaaggttgtaaactttgggtcggacactgttagcctca 294
>gb|CL183896.1|CL183896 104_396_10898479_114_31923_319 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898479, DNA
sequence
Length = 788
Score = 105 bits (53), Expect = 6e-021
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| |||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 126 gtggaacccggatgctattgtcttcaactcctggcaacattacggaactcctagttactg 67
Query: 90 gatgcagacnnttttccg 107
||||||||| |||||||
Sbjct: 66 gatgcagacacttttccg 49
>gb|AW677945.1|AW677945 WS1_12_G12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 613
Score = 103 bits (52), Expect = 2e-020
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 17 acaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatggna 76
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct: 539 acaatgatcaaacgtggaacccggatgctattgtcttcaactcctggcaacattacggaa 598
Query: 77 ctcctagctactgga 91
||||||| |||||||
Sbjct: 599 ctcctagttactgga 613
>gb|CW128898.1|CW128898 104_510_11114268_116_34757_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114268, DNA
sequence
Length = 620
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 405 gcagatgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctggct 462
||||||||| |||||||||||||||||||| ||||| |||||||||| || ||||||
Sbjct: 191 gcagatgcaagtcacgctggctcctcactcattcacatccttcgatcttgctctggct 134
>gb|BI075496.1|BI075496 IP1_21_C05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 459
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 405 gcagatgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctggct 462
||||||||| |||||||||||||||||||| ||||| |||||||||| || ||||||
Sbjct: 247 gcagatgcaagtcacgctggctcctcactcattcacatccttcgatcttgctctggct 304
>gb|BI075633.1|BI075633 IP1_23_B05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 310
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 405 gcagatgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctggct 462
||||||||| |||||||||||||||||||| ||||| |||||||||| || ||||||
Sbjct: 98 gcagatgcaagtcacgctggctcctcactcattcacatccttcgatcttgctctggct 155
>gb|CW048319.1|CW048319 104_286_10513293_114_30214 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513293, DNA
sequence
Length = 485
Score = 65.9 bits (33), Expect = 5e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 260 tctccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctca 319
||||||||| |||||| |||||| ||||||| ||||||||||||||||| || ||||
Sbjct: 200 tctccacgactggactccaggccagtatcaacgctctgggatcaaccgccactgttctca 259
Query: 320 cgtctggcaacgtcatggacgagaactccttcagtaacccgaacaaggt 368
| || | ||||| ||||| || || |||||||||||||| | ||||||
Sbjct: 260 catcagcaaacgtgatggatgaaaattccttcagtaacccaaccaaggt 308
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 161 gttcgctggccgcgtctgcgatcacgtggcaggatgcagagaatagcttcctgagagtga 220
||||||| || ||||||||||| || |||||||| ||||||| |||||||| ||||| |
Sbjct: 19 gttcgctcgcagcgtctgcgattacctggcaggactcagagaacagcttccttagagtaa 78
Query: 221 agg 223
|||
Sbjct: 79 agg 81
>gb|CW199473.1|CW199473 104_624_11183529_116_37058_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183529, DNA
sequence
Length = 664
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 31 tggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactgg 90
|||| ||| ||||| || ||||||||||| |||||||| || || ||||| || ||||||
Sbjct: 568 tggatcccagacgcgatagtcttcaactcgtggcaacagtacggaactccgagttactgg 627
Query: 91 atgcagacnnttttccg 107
|||||||| |||||||
Sbjct: 628 atgcagacatttttccg 644
>gb|CW199474.1|CW199474 104_624_11183529_148_36850_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183529, DNA
sequence
Length = 743
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 31 tggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactgg 90
|||| ||| ||||| || ||||||||||| |||||||| || || ||||| || ||||||
Sbjct: 384 tggatcccagacgcgatagtcttcaactcgtggcaacagtacggaactccgagttactgg 325
Query: 91 atgcagacnnttttccg 107
|||||||| |||||||
Sbjct: 324 atgcagacatttttccg 308
>gb|CW360333.1|CW360333 fsbb001f028g01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028g01, DNA
sequence
Length = 730
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 31 tggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactgg 90
|||| ||| ||||| || ||||||||||| |||||||| || || ||||| || ||||||
Sbjct: 218 tggatcccagacgcgatagtcttcaactcgtggcaacagtacggaactccgagttactgg 277
Query: 91 atgcagacnnttttccg 107
|||||||| |||||||
Sbjct: 278 atgcagacatttttccg 294
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 31 tggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactgg 90
|||| ||| ||||| || ||||||||||| |||||||| || || ||||| || ||||||
Sbjct: 6125 tggatcccagacgcgatagtcttcaactcgtggcaacagtacggaactccgagttactgg 6066
Query: 91 atgcagacnnttttccg 107
|||||||| |||||||
Sbjct: 6065 atgcagacatttttccg 6049
>gb|CN133913.1|CN133913 OX1_19_D01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 3', mRNA sequence
Length = 715
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 16 gacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||||| |||| ||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 55 gacaatgatcaaaggtggaacccagatgctattgtctttaattcatggcagcactatgg 113
>gb|AW747589.1|AW747589 WS1_73_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 171
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 445 ttcgatctggcgctggctgagcccaagcttgtggc 479
|||||| ||||||||||| || |||||||||||||
Sbjct: 2 ttcgatttggcgctggctcagtccaagcttgtggc 36
>gb|CW122925.1|CW122925 104_502_11110938_116_34690_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110938, DNA
sequence
Length = 637
Score = 42.1 bits (21), Expect = 0.077
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 422 gtggaacccagatgctattgtctttaattcatggcagcactatgg 466
>gb|CW230520.1|CW230520 104_679_11210602_116_37485_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210602, DNA
sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 542 gagggtgtggagtgtggtgtg 562
|||||||||||||||||||||
Sbjct: 165 gagggtgtggagtgtggtgtg 145
>gb|CW391719.1|CW391719 fsbb001f078a05k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f078a05, DNA
sequence
Length = 476
Score = 42.1 bits (21), Expect = 0.077
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 73 gtggaacccagatgctattgtctttaattcatggcagcactatgg 29
>gb|CW392111.1|CW392111 fsbb001f078j07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078j07, DNA
sequence
Length = 802
Score = 42.1 bits (21), Expect = 0.077
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 509 gtggaacccagatgctattgtctttaattcatggcagcactatgg 465
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,099
Number of Sequences: 832831
Number of extensions: 176099
Number of successful extensions: 45193
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45040
Number of HSP's gapped (non-prelim): 152
length of query: 798
length of database: 491,359,669
effective HSP length: 20
effective length of query: 778
effective length of database: 474,703,049
effective search space: 369318972122
effective search space used: 369318972122
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)