BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE358411.1|BE358411 DG1_29_C02.g1_A002 Dark Grown 1 (DG1... 613 e-173
gb|BG323188.1|BG323188 EM1_15_H09.g1_A002 Embryo 1 (EM1) So... 611 e-173
gb|BF656911.1|BF656911 OV2_22_E11.g1_A002 Ovary 2 (OV2) Sor... 609 e-172
gb|CD424847.1|CD424847 SA1_9_H04.b1_A002 Salicylic acid-tre... 605 e-171
gb|CD424232.1|CD424232 SA1_4_H05.b1_A002 Salicylic acid-tre... 555 e-156
gb|CF072326.1|CF072326 FE1_2_H07.b1_A002 Iron-deficient see... 440 e-122
gb|BG357415.1|BG357415 OV2_29_F03.g1_A002 Ovary 2 (OV2) Sor... 432 e-119
gb|BM327869.1|BM327869 PIC1_18_E04.g1_A002 Pathogen-infecte... 432 e-119
gb|CF072848.1|CF072848 FE1_26_E01.b1_A002 Iron-deficient se... 416 e-114
gb|BM331190.1|BM331190 PIC1_70_G09.g1_A002 Pathogen-infecte... 412 e-113
gb|DN552508.1|DN552508 pSHR-RT-A-H1_H01_C100 pSHR Sorghum h... 343 1e-092
gb|BI098064.1|BI098064 IP1_31_E11.g1_A002 Immature pannicle... 337 9e-091
gb|BG556485.1|BG556485 EM1_37_G04.g1_A002 Embryo 1 (EM1) So... 319 2e-085
gb|CD234501.1|CD234501 SS1_27_C11.g1_A012 Salt-stressed see... 319 2e-085
gb|BF586222.1|BF586222 FM1_27_C04.b1_A003 Floral-Induced Me... 295 3e-078
gb|BG933148.1|BG933148 WS1_29_G10.b1_A002 Water-stressed 1 ... 293 1e-077
gb|BG487902.1|BG487902 RHIZ2_60_G05.g1_A003 Rhizome2 (RHIZ2... 285 3e-075
gb|CD463051.1|CD463051 ETH1_42_E06.b1_A002 Ethylene-treated... 258 7e-067
gb|AW677945.1|AW677945 WS1_12_G12.b1_A002 Water-stressed 1 ... 256 3e-066
gb|AW678004.1|AW678004 WS1_12_G12.g1_A002 Water-stressed 1 ... 252 4e-065
gb|CD232395.1|CD232395 SS1_45_A09.b1_A012 Salt-stressed see... 204 9e-051
gb|BG558740.1|BG558740 RHIZ2_59_H07.g1_A003 Rhizome2 (RHIZ2... 202 3e-050
gb|CW203726.1|CW203726 104_631_11186168_116_37062_024 Sorgh... 186 2e-045
gb|CW203727.1|CW203727 104_631_11186168_148_36906_024 Sorgh... 186 2e-045
gb|CW342782.1|CW342782 104_844_11487063_148_36178_052 Sorgh... 186 2e-045
gb|CW375130.1|CW375130 fsbb001f052f19f0 Sorghum methylation... 186 2e-045
gb|CW391258.1|CW391258 fsbb001f077f01f0 Sorghum methylation... 186 2e-045
gb|CW391259.1|CW391259 fsbb001f077f01k0 Sorghum methylation... 186 2e-045
gb|CW316446.1|CW316446 104_807_11472898_148_35847_033 Sorgh... 178 5e-043
gb|BQ656040.1|BQ656040 pRC0338 Sorghum halepense rhizome cD... 163 3e-038
gb|BG556693.1|BG556693 EM1_40_D05.g1_A002 Embryo 1 (EM1) So... 159 5e-037
gb|CF431297.1|CF431297 NIT1_5_G04.b1_A002 Nitrogen-deficien... 147 2e-033
gb|BG273345.1|BG273345 OV2_27_C04.g1_A002 Ovary 2 (OV2) Sor... 145 7e-033
gb|AW924979.1|AW924979 WS1_73_H02.b1_A002 Water-stressed 1 ... 135 7e-030
gb|CL183896.1|CL183896 104_396_10898479_114_31923_319 Sorgh... 131 1e-028
gb|CW375131.1|CW375131 fsbb001f052f19k0 Sorghum methylation... 127 2e-027
gb|AW283933.1|AW283933 LG1_282_F07.g1_A002 Light Grown 1 (L... 119 4e-025
gb|CW316445.1|CW316445 104_807_11472898_116_35843_033 Sorgh... 115 6e-024
gb|CL183897.1|CL183897 104_396_10898479_116_31924_319 Sorgh... 107 2e-021
gb|CN133913.1|CN133913 OX1_19_D01.b1_A002 Oxidatively-stres... 74 2e-011
gb|CW128898.1|CW128898 104_510_11114268_116_34757_036 Sorgh... 68 1e-009
gb|BI075496.1|BI075496 IP1_21_C05.g1_A002 Immature pannicle... 68 1e-009
gb|BI075633.1|BI075633 IP1_23_B05.g1_A002 Immature pannicle... 68 1e-009
gb|CW199473.1|CW199473 104_624_11183529_116_37058_037 Sorgh... 66 5e-009
gb|CW199474.1|CW199474 104_624_11183529_148_36850_037 Sorgh... 66 5e-009
gb|CW360333.1|CW360333 fsbb001f028g01k0 Sorghum methylation... 66 5e-009
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 66 5e-009
gb|CW048319.1|CW048319 104_286_10513293_114_30214 Sorghum m... 60 3e-007
gb|CX622684.1|CX622684 GABR1_65_H12.b1_A002 GA- or brassino... 60 3e-007
gb|CW040084.1|CW040084 104_273_10505880_114_30266 Sorghum m... 50 3e-004
gb|CW499260.1|CW499260 fsbb001f293o20f0 Sorghum methylation... 50 3e-004
gb|AW747589.1|AW747589 WS1_73_H02.g1_A002 Water-stressed 1 ... 46 0.005
gb|CW122925.1|CW122925 104_502_11110938_116_34690_079 Sorgh... 44 0.019
gb|CW391719.1|CW391719 fsbb001f078a05k0 Sorghum methylation... 44 0.019
gb|CW392111.1|CW392111 fsbb001f078j07k0 Sorghum methylation... 44 0.019
>gb|BE358411.1|BE358411 DG1_29_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 613 bits (309), Expect = e-173
Identities = 501/565 (88%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 565 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 506
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 505 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 446
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 445 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 386
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 385 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 326
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 325 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 266
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 265 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 206
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccat 594
|||||||||| || || ||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct: 205 ggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgt 146
Query: 595 agtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttca 654
| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||
Sbjct: 145 aatgttgccaggagttgaagacaatagcatccgggttccacgtttgatcattgttattca 86
Query: 655 cgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtga 714
|||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 85 cgaatagtggagcgtaacttgccatctgaacaatgtcactgtttttctccagaccagtaa 26
Query: 715 ggaaagcagcttcagccaacgaagc 739
||||||||||||||||||| |||||
Sbjct: 25 ggaaagcagcttcagccaatgaagc 1
>gb|BG323188.1|BG323188 EM1_15_H09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 611 bits (308), Expect = e-173
Identities = 500/564 (88%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 564 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 505
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 504 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 445
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 444 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 385
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 384 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 325
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 324 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 265
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 264 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 205
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccat 594
|||||||||| || || ||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct: 204 ggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgt 145
Query: 595 agtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttca 654
| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||
Sbjct: 144 aatgttgccaggagttgaagacaatagcatccgggttccacgtttgatcattgttattca 85
Query: 655 cgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtga 714
|||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 84 cgaatagtggagcgtaacttgccatctgaacaatgtcactgtttttctccagaccagtaa 25
Query: 715 ggaaagcagcttcagccaacgaag 738
||||||||||||||||||| ||||
Sbjct: 24 ggaaagcagcttcagccaatgaag 1
>gb|BF656911.1|BF656911 OV2_22_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 609 bits (307), Expect = e-172
Identities = 496/559 (88%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 563 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 504
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 503 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 444
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 443 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 384
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 383 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 324
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 323 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 264
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 263 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 204
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccat 594
|||||||||| || || ||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct: 203 ggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgt 144
Query: 595 agtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttca 654
| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||
Sbjct: 143 aatgttgccaggagttgaagacaatagcatccgggttccacgtttgatcattgttattca 84
Query: 655 cgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtga 714
|||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 83 cgaatagtggagcgtaacttgccatctgaacaatgtcactgtttttctccagaccagtaa 24
Query: 715 ggaaagcagcttcagccaa 733
|||||||||||||||||||
Sbjct: 23 ggaaagcagcttcagccaa 5
>gb|CD424847.1|CD424847 SA1_9_H04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 3', mRNA sequence
Length = 664
Score = 605 bits (305), Expect = e-171
Identities = 500/565 (88%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 567 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 508
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 507 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 448
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 447 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 388
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 387 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 328
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 327 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 268
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 267 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 208
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccat 594
|||||||||| || || ||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct: 207 ggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgt 148
Query: 595 agtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttca 654
| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||
Sbjct: 147 aatgttgccaggagttgaagacaatagcatccgggttccacgtttgatcattgttattca 88
Query: 655 cgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtga 714
|||| ||||| ||| ||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 87 cgaatagtggagcgcaacttgccatctgaacaatgtcactgtttttctccagaccagtaa 28
Query: 715 ggaaagcagcttcagccaacgaagc 739
||||||||||||||||||| |||||
Sbjct: 27 ggaaagcagcttcagccaatgaagc 3
>gb|CD424232.1|CD424232 SA1_4_H05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 3', mRNA sequence
Length = 632
Score = 555 bits (280), Expect = e-156
Identities = 466/528 (88%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 528 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 469
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 468 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 409
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 408 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 349
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 348 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 289
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 288 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 229
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 228 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 169
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccat 594
|||||||||| || || ||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct: 168 ggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgt 109
Query: 595 agtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttca 654
| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||
Sbjct: 108 aatgttgccaggagttgaagacaatagcatccgggttccacgtttgatcattgttattca 49
Query: 655 cgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttct 702
|||| ||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 48 cgaatagtggagcgtaacttgccatctgaacaatgtcactgtttttct 1
>gb|CF072326.1|CF072326 FE1_2_H07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_H07_A002 3', mRNA sequence
Length = 544
Score = 440 bits (222), Expect = e-122
Identities = 384/438 (87%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 438 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 379
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 378 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 319
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 318 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 259
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 258 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 199
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 198 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 139
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||| | || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 138 gccacgtaattgcaaatgcagctagcgagcttgagtaccgggaactcatattaattggat 79
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccat 594
|||||||||| || || ||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct: 78 ggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgt 19
Query: 595 agtgctgccaggagttga 612
| || |||||||||||||
Sbjct: 18 aatgttgccaggagttga 1
>gb|BG357415.1|BG357415 OV2_29_F03.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 529
Score = 432 bits (218), Expect = e-119
Identities = 368/418 (88%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 427 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 368
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 367 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 308
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 307 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 248
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 247 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 188
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 187 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 128
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 127 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 68
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttcc 592
|||||||||| || || ||||| ||||||| |||||||||||||| |||||||||||
Sbjct: 67 ggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttcc 10
>gb|BM327869.1|BM327869 PIC1_18_E04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 551
Score = 432 bits (218), Expect = e-119
Identities = 368/418 (88%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 429 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 370
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 369 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 310
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 309 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 250
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 249 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 190
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 189 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 130
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 129 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 70
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttcc 592
|||||||||| || || ||||| ||||||| |||||||||||||| |||||||||||
Sbjct: 69 ggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttcc 12
>gb|CF072848.1|CF072848 FE1_26_E01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_26_E01_A002 3', mRNA sequence
Length = 514
Score = 416 bits (210), Expect = e-114
Identities = 357/406 (87%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 409 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 350
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 349 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 290
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 289 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 230
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 229 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 170
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 169 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 110
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 109 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 50
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagta 580
|||||||||| || || ||||| ||||||| ||||||||||||||
Sbjct: 49 ggatcatggcaccactggactcacggaaaagtgtctgcatccagta 4
>gb|BM331190.1|BM331190 PIC1_70_G09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 627
Score = 412 bits (208), Expect = e-113
Identities = 355/404 (87%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 404 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 345
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 344 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 285
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 284 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 225
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||||| ||||||||
Sbjct: 224 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggc 165
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 164 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 105
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||||| || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 104 gccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggat 45
Query: 535 ggatcatggcgccgcttgactcgcggaaaatcgtctgcatccag 578
|||||||||| || || ||||| ||||||| ||||||||||||
Sbjct: 44 ggatcatggcaccactggactcacggaaaagtgtctgcatccag 1
>gb|DN552508.1|DN552508 pSHR-RT-A-H1_H01_C100 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 484
Score = 343 bits (173), Expect = 1e-092
Identities = 299/341 (87%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 346 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 287
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 286 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 227
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 226 caaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacag 167
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
||||||||||||| |||| |||||| |||||| || || || ||||||| |||||||
Sbjct: 166 tggcggttgatccaagcgagttgacactggcctgaagtccacttgtggagatggtgaggc 107
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 106 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 47
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgg 515
||||||| || ||||| || || ||||| || |||||||||
Sbjct: 46 gccacgtaattgcagatgcagctagcgagcttgagtaccgg 6
>gb|BI098064.1|BI098064 IP1_31_E11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 337 bits (170), Expect = 9e-091
Identities = 320/370 (86%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || ||||||||||| ||| || | |||||||||||
Sbjct: 372 atcacatctctgccacaagcttggactgagccagcgccaaatcaaacgtggtgaaggagt 313
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 312 gaggagccaccgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 253
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacgg 354
|||||||||| ||||||||||| |||||||| ||||| ||||||||| | |||| || |
Sbjct: 252 caaccttgtttgggttactgaaagagttctcatccataacgttgccaaatgtgaaaacag 193
Query: 355 tggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggc 414
|||||||||||||||||| |||||| |||||| || || || ||||| | ||||||||
Sbjct: 192 tggcggttgatcccagcgagttgacactggcctgaagtccacttgtggaaatcgtgaggc 133
Query: 415 taacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcct 474
|||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||| ||||
Sbjct: 132 taacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcct 73
Query: 475 gccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggat 534
||||||| || ||| | || || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 72 gccacgtaattgcaaatgcagctagcgagcttgagtaccgggaactcatattaattggat 13
Query: 535 ggatcatggc 544
||||||||||
Sbjct: 12 ggatcatggc 3
>gb|BG556485.1|BG556485 EM1_37_G04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 337
Score = 319 bits (161), Expect = 2e-085
Identities = 290/333 (87%)
Strand = Plus / Minus
Query: 248 gacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaaccttgttcgg 307
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 337 gacctgcatctgctccccagcgttgctcagctggcttttcaccggcgcaaccttgtttgg 278
Query: 308 gttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcggttgatcc 367
||||||||| |||||||| ||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 277 gttactgaaagagttctcatccataacgttgccagatgtgagaacagtggcggttgatcc 218
Query: 368 cagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacggggtccga 427
||||| |||||| |||||| || || || ||||||| |||||||||||| | ||||||
Sbjct: 217 cagcgagttgacactggcctgaagtccacttgtggagatcgtgaggctaacagtgtccga 158
Query: 428 cccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccacgtgatcgc 487
||| ||||| || ||||| ||||| |||||||||||||||| ||||||||||| || ||
Sbjct: 157 cccaaagtttacaacctttactctaaggaagctattctctgagtcctgccacgtaattgc 98
Query: 488 agacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatcatggcgcc 547
||| || || ||||| || |||||||||||||| ||||||| |||||||||||||| ||
Sbjct: 97 agatgcagctagcgagcttgagtaccgggaactcatattaattggatggatcatggcacc 38
Query: 548 gcttgactcgcggaaaatcgtctgcatccagta 580
|| ||||| ||||||| ||||||||||||||
Sbjct: 37 actggactcacggaaaagtgtctgcatccagta 5
>gb|CD234501.1|CD234501 SS1_27_C11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_27_C11_A012 5', mRNA sequence
Length = 673
Score = 319 bits (161), Expect = 2e-085
Identities = 251/281 (89%)
Strand = Plus / Minus
Query: 498 agcgaactcgagtaccgggaactgatattaaccggatggatcatggcgccgcttgactcg 557
||||| || |||||||||||||| ||||||| |||||||||||||| || || |||||
Sbjct: 661 agcgagcttgagtaccgggaactcatattaattggatggatcatggcaccactggactca 602
Query: 558 cggaaaatcgtctgcatccagtagctaggagttccatagtgctgccaggagttgaagacg 617
||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||
Sbjct: 601 cggaaaagtgtctgcatccagtaactaggagttccgtaatgttgccaggagttgaagaca 542
Query: 618 atagcgtccgggttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgcc 677
||||| ||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||
Sbjct: 541 atagcatccgggttccacgtttgatcattgttattcacgaatagtggagcgtaacttgcc 482
Query: 678 atctgaacaatatcactgttcttctccagaccagtgaggaaagcagcttcagccaacgaa 737
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 481 atctgaacaatgtcactgtttttctccagaccagtaaggaaagcagcttcagccaatgaa 422
Query: 738 gcaagaagactgcctctacccgcgtcacttctccagacagc 778
|| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 421 gcgagaagacttcctctgcccgcatcacttctccagacagc 381
>gb|BF586222.1|BF586222 FM1_27_C04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 404
Score = 295 bits (149), Expect = 3e-078
Identities = 242/273 (88%)
Strand = Plus / Plus
Query: 186 gccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgaggagccagc 245
||||||||||||| || |||||||||||||||||| | |||||||||||||||||||||
Sbjct: 132 gccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtgaggagccagt 191
Query: 246 gtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaaccttgttc 305
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgcaaccttgttt 251
Query: 306 gggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcggttgat 365
||||||||||| |||||||| ||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 252 gggttactgaaagagttctcatccataacgttgccagatgtgagaacagtggcggttgat 311
Query: 366 cccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacggggtcc 425
|| |||| |||||| |||||| || || || ||||||| |||||||||||| | ||||
Sbjct: 312 ccaagcgagttgacactggcctgaagtccacttgtggagatcgtgaggctaacagtgtcc 371
Query: 426 gacccgaagttcacgaccttcactctcaggaag 458
||||| ||||| || ||||| ||||| ||||||
Sbjct: 372 gacccaaagtttacaacctttactctaaggaag 404
>gb|BG933148.1|BG933148 WS1_29_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 293 bits (148), Expect = 1e-077
Identities = 223/248 (89%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
|||||||||||||| || || ||||| ||||||| |||||||||||||| |||||||||
Sbjct: 570 ggatggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagtt 511
Query: 591 ccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcg 650
|| || || ||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 510 ccgtaatgttgccaggagttgaagacaatagcatccgggttccacgtttgatcattgtta 451
Query: 651 ttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacca 710
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 450 ttcacgaatagtggagcgtaacttgccatctgaacaatgtcactgtttttctccagacca 391
Query: 711 gtgaggaaagcagcttcagccaacgaagcaagaagactgcctctacccgcgtcacttctc 770
|| |||||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||
Sbjct: 390 gtaaggaaagcagcttcagccaatgaagcgagaagacttcctctgcccgcatcacttctc 331
Query: 771 cagacagc 778
||||||||
Sbjct: 330 cagacagc 323
>gb|BG487902.1|BG487902 RHIZ2_60_G05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 285 bits (144), Expect = 3e-075
Identities = 387/468 (82%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||| |||| || |||||| || |||||||| | | ||||||||||||||
Sbjct: 474 atctcggcgacaagtttggactgagccagggcgagatcgaacgagctgaaggagtgagga 415
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|||| |||||||||||||||||| || || ||||||| | ||| ||||||||| |||||
Sbjct: 414 gccaacgtgacctgcatctgctctgcagcattgctcatatcgctcttcaccggcacaacc 355
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | |||||||||||||| || || ||||| ||||| | || ||||| || ||||||
Sbjct: 354 ttggttgggttactgaaggaattttcatccatcacgtttgctgatgtgagaacagtggcg 295
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
||||||||||| ||||||| |||||| ||| || |||||||||| || ||| | ||
Sbjct: 294 gttgatcccagagcgttgatactggcctggagtccactcgtggagattgtcagggtcaca 235
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| || ||||| ||||| | |||||| ||||| |||||||| ||||||| ||||||||
Sbjct: 234 gcatctgacccaaagtttatgacctttactctaaggaagctgttctctgagtcctgccaa 175
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
|| ||||||||||| || ||||||| ||||| | ||| ||||| || ||||| | |
Sbjct: 174 gtaatcgcagacgctgcgagcgaaccagagtagctggagctgattgtagttggatgtaac 115
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgc 599
|| || || || ||||||||||||| ||||||||||||||| |||||||| || || |||
Sbjct: 114 atagcaccactagactcgcggaaaagcgtctgcatccagtaactaggagtgccgtaatgc 55
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattg 647
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 54 tgccaggagttgaagacgatagcgtctgggttccacgtttggtcattg 7
>gb|CD463051.1|CD463051 ETH1_42_E06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_E06_A002 3', mRNA sequence
Length = 418
Score = 258 bits (130), Expect = 7e-067
Identities = 253/294 (86%)
Strand = Plus / Minus
Query: 409 tgaggctaacggggtccgacccgaagttcacgaccttcactctcaggaagctattctctg 468
|||||||||| | ||||||||| ||||| || ||||| ||||| ||||||||||||||||
Sbjct: 294 tgaggctaacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctg 235
Query: 469 catcctgccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaa 528
||||||||||| || ||| | || || ||||| || |||||||||||||| |||||||
Sbjct: 234 agtcctgccacgtaattgcaaatgcagctagcgagcttgagtaccgggaactcatattaa 175
Query: 529 ccggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggag 588
||||||||| |||| || || ||||| ||||||| |||||||||||||| |||||||
Sbjct: 174 ttggatggatcgtggcaccactggactcacggaaaagtgtctgcatccagtaactaggag 115
Query: 589 ttccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgt 648
|||| || || |||||||||||||| || ||||| ||||||||||||||||| |||||||
Sbjct: 114 ttccgtaatgttgccaggagttgaaaacaatagcatccgggttccacgtttgatcattgt 55
Query: 649 cgttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttct 702
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 54 tattcacgaatagtggagcgtaacttgccatctgaacaatgtcactgtttttct 1
>gb|AW677945.1|AW677945 WS1_12_G12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 613
Score = 256 bits (129), Expect = 3e-066
Identities = 186/205 (90%)
Strand = Plus / Minus
Query: 574 tccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccgggttcc 633
||||||| ||||||||||| || || ||||||||||||||||| ||||| ||||||||||
Sbjct: 613 tccagtaactaggagttccgtaatgttgccaggagttgaagacaatagcatccgggttcc 554
Query: 634 acgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaatatcac 693
||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 553 acgtttgatcattgttattcacgaatagtggagcgtaacttgccatctgaacaatgtcac 494
Query: 694 tgttcttctccagaccagtgaggaaagcagcttcagccaacgaagcaagaagactgcctc 753
|||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 493 tgtttttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagacttcctc 434
Query: 754 tacccgcgtcacttctccagacagc 778
| ||||| |||||||||||||||||
Sbjct: 433 tgcccgcatcacttctccagacagc 409
>gb|AW678004.1|AW678004 WS1_12_G12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 394
Score = 252 bits (127), Expect = 4e-065
Identities = 235/271 (86%)
Strand = Plus / Minus
Query: 186 gccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgaggagccagc 245
||||||||||||| || ||||||||||| ||| || | ||||||||||||||||||||||
Sbjct: 271 gccacaagcttggactgagccagcgccaaatcaaacgtggtgaaggagtgaggagccagc 212
Query: 246 gtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaaccttgttc 305
||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gtgacctgcatttgctccccagcgttgctcagctggcttttcaccggcgcaaccttgttt 152
Query: 306 gggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcggttgat 365
||||||||||| ||||||| ||||| ||||||||| | |||| || ||||||||||||
Sbjct: 151 gggttactgaaaaagttctcatccataacgttgccaaatgtgaaaacagtggcggttgat 92
Query: 366 cccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacggggtcc 425
||||||| |||||| |||||| || || || | ||||| |||||||||||| | ||||
Sbjct: 91 cccagcgagttgacactggcctgaagtccacttggggagatcgtgaggctaacagtgtcc 32
Query: 426 gacccgaagttcacgaccttcactctcagga 456
||||| ||||| || ||||| ||||| ||||
Sbjct: 31 gacccaaagtttacaacctttactctaagga 1
>gb|CD232395.1|CD232395 SS1_45_A09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 3', mRNA sequence
Length = 272
Score = 204 bits (103), Expect = 9e-051
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| |||||||| |||| || ||||||||||| ||| || | |||||||||||
Sbjct: 178 atcacatctctgccacaagattggactgagccagcgccaaatccaacgtggtgaaggagt 119
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 118 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggtg 59
Query: 295 caaccttgttcgggttactgaaggagttctcgtccatgacgttgcca 341
|||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 58 caaccttgtttgggttactgaaagagttctcatccataacgttgcca 12
>gb|BG558740.1|BG558740 RHIZ2_59_H07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 202 bits (102), Expect = 3e-050
Identities = 333/410 (81%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||| |||| || |||||| || |||||||| | | ||||||||||||||
Sbjct: 414 atctcggcgacaagtttggactgagccagggcgagatcgaacgagctgaaggagtgagga 355
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|||| |||||||||||||||||| || || ||||||| | ||| ||||||||| |||||
Sbjct: 354 gccaacgtgacctgcatctgctctgcagcattgctcatatcgctcttcaccggcacaacc 295
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | |||||||||||||| || || ||||| ||||| | || ||||| || ||||||
Sbjct: 294 ttggttgggttactgaaggaattttcatccatcacgtttgctgatgtgagaacagtggcg 235
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
||||||||||| ||||||| |||||| ||| || |||||||||| || ||| | ||
Sbjct: 234 gttgatcccagagcgttgatactggcctggagtccactcgtggagattgtcagggtcaca 175
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| || ||||| ||||| | |||||| ||||| |||||||| ||||||| ||||||||
Sbjct: 174 gcatctgacccaaagtttatgacctttactctaaggaagctgttctctgagtcctgccaa 115
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
|| ||||||||||| || ||||||| ||||| | ||| ||||| || ||||| | |
Sbjct: 114 gtaatcgcagacgctgcgagcgaaccagagtagctggagctgattgtagttggatgtaac 55
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagt 589
|| || || || ||||||||||||| ||||||||||||||| ||||||||
Sbjct: 54 atagcaccactagactcgcggaaaagcgtctgcatccagtaactaggagt 5
>gb|CW203726.1|CW203726 104_631_11186168_116_37062_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186168, DNA
sequence
Length = 652
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Plus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 524 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 583
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 584 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 643
Query: 295 caacct 300
||||||
Sbjct: 644 caacct 649
>gb|CW203727.1|CW203727 104_631_11186168_148_36906_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186168, DNA
sequence
Length = 663
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 587 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 528
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 527 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 468
Query: 295 caacct 300
||||||
Sbjct: 467 caacct 462
Score = 127 bits (64), Expect = 2e-027
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 297 accttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtg 356
|||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |||
Sbjct: 345 accttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagtg 286
Query: 357 gcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggcta 416
|||||||||||||||| |||||| |||||| || || || ||||||| ||||||||||
Sbjct: 285 gcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggcta 226
Query: 417 acggggtccgacccgaagtt 436
|| | ||||||||| |||||
Sbjct: 225 acagtgtccgacccaaagtt 206
Score = 77.8 bits (39), Expect = 1e-012
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 442 ccttcactctcaggaagctattctctgcatcctgccacgtgatcgcagacgcggccagcg 501
|||| ||||| |||||||||||||||| ||||||||||| || ||||| || || ||||
Sbjct: 90 cctttactctaaggaagctattctctgagtcctgccacgtaattgcagatgcagctagcg 31
Query: 502 aactcgagtaccgggaactgatattaa 528
| || |||||||||||||| |||||||
Sbjct: 30 agcttgagtaccgggaactcatattaa 4
>gb|CW342782.1|CW342782 104_844_11487063_148_36178_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487063, DNA
sequence
Length = 706
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 219 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 160
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 159 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 100
Query: 295 caacct 300
||||||
Sbjct: 99 caacct 94
>gb|CW375130.1|CW375130 fsbb001f052f19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f052f19, DNA
sequence
Length = 831
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Plus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 599 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 658
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 659 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 718
Query: 295 caacct 300
||||||
Sbjct: 719 caacct 724
>gb|CW391258.1|CW391258 fsbb001f077f01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077f01, DNA
sequence
Length = 660
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 603 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 544
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 543 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 484
Query: 295 caacct 300
||||||
Sbjct: 483 caacct 478
Score = 127 bits (64), Expect = 2e-027
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 297 accttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtg 356
|||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |||
Sbjct: 361 accttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagtg 302
Query: 357 gcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggcta 416
|||||||||||||||| |||||| |||||| || || || ||||||| ||||||||||
Sbjct: 301 gcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggcta 242
Query: 417 acggggtccgacccgaagtt 436
|| | ||||||||| |||||
Sbjct: 241 acagtgtccgacccaaagtt 222
Score = 93.7 bits (47), Expect = 2e-017
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 442 ccttcactctcaggaagctattctctgcatcctgccacgtgatcgcagacgcggccagcg 501
|||| ||||| |||||||||||||||| ||||||||||| || ||||| || || ||||
Sbjct: 106 cctttactctaaggaagctattctctgagtcctgccacgtaattgcagatgcagctagcg 47
Query: 502 aactcgagtaccgggaactgatattaaccggatggatcatggc 544
| || |||||||||||||| ||||||| ||||||||||||||
Sbjct: 46 agcttgagtaccgggaactcatattaattggatggatcatggc 4
>gb|CW391259.1|CW391259 fsbb001f077f01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077f01, DNA
sequence
Length = 564
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Plus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 302 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 361
Query: 235 gaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcg 294
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 362 gaggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcg 421
Query: 295 caacct 300
||||||
Sbjct: 422 caacct 427
>gb|CW316446.1|CW316446 104_807_11472898_148_35847_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472898, DNA
sequence
Length = 646
Score = 178 bits (90), Expect = 5e-043
Identities = 168/194 (86%)
Strand = Plus / Plus
Query: 442 ccttcactctcaggaagctattctctgcatcctgccacgtgatcgcagacgcggccagcg 501
|||| ||||| |||||||||||||||| ||||||||||| || ||||| || || ||||
Sbjct: 219 cctttactctaaggaagctattctctgagtcctgccacgtaattgcagatgcagctagcg 278
Query: 502 aactcgagtaccgggaactgatattaaccggatggatcatggcgccgcttgactcgcgga 561
| || |||||||||||||| ||||||| |||||||||||||| || || ||||| ||||
Sbjct: 279 agcttgagtaccgggaactcatattaattggatggatcatggcaccactggactcacgga 338
Query: 562 aaatcgtctgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatag 621
||| |||||||||||||| ||||||||||| || || ||||||||||||||||| ||||
Sbjct: 339 aaagtgtctgcatccagtaactaggagttccgtaatgttgccaggagttgaagacaatag 398
Query: 622 cgtccgggttccac 635
| ||||||||||||
Sbjct: 399 catccgggttccac 412
Score = 85.7 bits (43), Expect = 6e-015
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 334 cgttgccagacgtgaggacggtggcggttgatcccagcgcgttgacgctggccccgagcc 393
|||||||||| ||||| || ||||||||||||||||||| |||||| |||||| || |
Sbjct: 1 cgttgccagatgtgagaacagtggcggttgatcccagcgagttgacactggcctgaagtc 60
Query: 394 cgctcgtggagaccgtgaggctaacggggtccgacccgaagtt 436
| || ||||||| |||||||||||| | ||||||||| |||||
Sbjct: 61 cacttgtggagatcgtgaggctaacagtgtccgacccaaagtt 103
Score = 75.8 bits (38), Expect = 5e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 634 acgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaatatcac 693
||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 500 acgtttgatcattgttattcacgaatagtggagcgtaacttgccatctgaacaatgtcac 559
Query: 694 tg 695
||
Sbjct: 560 tg 561
>gb|BQ656040.1|BQ656040 pRC0338 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0338, mRNA sequence
Length = 487
Score = 163 bits (82), Expect = 3e-038
Identities = 256/314 (81%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||| |||| || |||||| || |||||||| | | ||||||||||||||
Sbjct: 396 atctcggcgacaagtttggactgagccagggcgagatcgaacgagctgaaggagtgagga 337
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|||| |||||||||||||||||| || || ||||||| | ||| ||||||||| |||||
Sbjct: 336 gccaacgtgacctgcatctgctctgcagcattgctcatatcgctcttcaccggcacaacc 277
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | |||||||||||||| || || ||||| ||||| | || ||||| || ||||||
Sbjct: 276 ttggttgggttactgaaggaattttcatccatcacgtttgctgatgtgagaacagtggcg 217
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
||||||||||| ||||||| |||||| ||| || ||||||||| || ||| | ||
Sbjct: 216 gttgatcccagagcgttgatactggcctggagtccagtcgtggagattgtcagggtcaca 157
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| || ||||| ||||| | |||||| ||||| |||||||| ||||||| ||||||||
Sbjct: 156 gcatctgacccaaagtttatgacctttactctaaggaagctgttctctgagtcctgccaa 97
Query: 480 gtgatcgcagacgc 493
|| |||||||||||
Sbjct: 96 gtaatcgcagacgc 83
>gb|BG556693.1|BG556693 EM1_40_D05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 191
Score = 159 bits (80), Expect = 5e-037
Identities = 140/160 (87%)
Strand = Plus / Minus
Query: 271 tgctcagctggcttttcaccggcgcaaccttgttcgggttactgaaggagttctcgtcca 330
|||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||
Sbjct: 191 tgctcatctggcttttcaccggcgcaaccttgtttgggttactgaaagaggtctcatcca 132
Query: 331 tgacgttgccagacgtgaggacggtggcggttgatcccagcgcgttgacgctggccccga 390
| ||| ||||||| ||||| || ||||||||||||||||||| |||||| |||||| |
Sbjct: 131 taacggtgccagatgtgagaacagtggcggttgatcccagcgagttgacactggcctgaa 72
Query: 391 gcccgctcgtggagaccgtgaggctaacggggtccgaccc 430
| || || ||||||| |||||||||||| |||||||||||
Sbjct: 71 gtccacttgtggagatcgtgaggctaacagggtccgaccc 32
>gb|CF431297.1|CF431297 NIT1_5_G04.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_G04_A002 3', mRNA sequence
Length = 503
Score = 147 bits (74), Expect = 2e-033
Identities = 242/298 (81%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||| |||| || |||||| || |||||||| | | ||||||||||||||
Sbjct: 298 atctcggcgacaagtttggactgagccagggcgagatcgaacgagctgaaggagtgagga 239
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|||| |||||||||||||||||| || || ||||||| | ||| ||||||||| |||||
Sbjct: 238 gccaacgtgacctgcatctgctctgcagcattgctcatatcgctcttcaccggcacaacc 179
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | |||||||||||||| || || ||||| ||||| | || ||||| || ||||||
Sbjct: 178 ttggttgggttactgaaggaattttcatccatcacgtttgctgatgtgagaacagtggcg 119
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
||||||||||| ||||||| |||||| ||| || ||||||||| || ||| | ||
Sbjct: 118 gttgatcccagagcgttgatactggcctggagtccagtcgtggagattgtcagggtcaca 59
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgcc 477
| || ||||| ||||| | |||||| ||||| |||||||| ||||||| |||||||
Sbjct: 58 gcatctgacccaaagtttatgacctttactctaaggaagctgttctctgagtcctgcc 1
>gb|BG273345.1|BG273345 OV2_27_C04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 145 bits (73), Expect = 7e-033
Identities = 235/289 (81%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||| |||| || |||||| || |||||||| | | ||||||||||||||
Sbjct: 289 atctcggcgacaagtttggactgagccagggcgagatcgaacgagctgaaggagtgagga 230
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|||| |||||||||||||||||| || || ||||||| | ||| ||||||||| |||||
Sbjct: 229 gccaacgtgacctgcatctgctctgcagcattgctcatatcgctcttcaccggcacaacc 170
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | |||||||||||||| || || ||||| ||||| | || ||||| || ||||||
Sbjct: 169 ttggttgggttactgaaggaattttcatccatcacgtttgctgatgtgagaacagtggcg 110
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
||||||||||| ||||||| |||||| ||| || ||||||||| || ||| | ||
Sbjct: 109 gttgatcccagagcgttgatactggcctggagtccagtcgtggagattgtcagggtcaca 50
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctg 468
| || ||||| ||||| | |||||| ||||| |||||||| |||||||
Sbjct: 49 gcatctgacccaaagtttatgacctttactctaaggaagctgttctctg 1
>gb|AW924979.1|AW924979 WS1_73_H02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 422
Score = 135 bits (68), Expect = 7e-030
Identities = 92/100 (92%)
Strand = Plus / Minus
Query: 679 tctgaacaatatcactgttcttctccagaccagtgaggaaagcagcttcagccaacgaag 738
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 422 tctgaacaatgtcactgtttttctccagaccagtaaggaaagcagcttcagccaatgaag 363
Query: 739 caagaagactgcctctacccgcgtcacttctccagacagc 778
| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 362 cgagaagacttcctctgcccgcatcacttctccagacagc 323
>gb|CL183896.1|CL183896 104_396_10898479_114_31923_319 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898479, DNA
sequence
Length = 788
Score = 131 bits (66), Expect = 1e-028
Identities = 111/126 (88%)
Strand = Plus / Plus
Query: 510 taccgggaactgatattaaccggatggatcatggcgccgcttgactcgcggaaaatcgtc 569
||||||||||| ||||||| |||||||||||||| || || ||||| ||||||| |||
Sbjct: 1 taccgggaactcatattaattggatggatcatggcaccactggactcacggaaaagtgtc 60
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||| ||||||||||| || || ||||||||||||||||| ||||| ||||||
Sbjct: 61 tgcatccagtaactaggagttccgtaatgttgccaggagttgaagacaatagcatccggg 120
Query: 630 ttccac 635
||||||
Sbjct: 121 ttccac 126
Score = 115 bits (58), Expect = 6e-024
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 693 ctgttcttctccagaccagtgaggaaagcagcttcagccaacgaagcaagaagactgcct 752
||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||
Sbjct: 447 ctgtttttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagacttcct 506
Query: 753 ctacccgcgtcacttctccagacagc 778
|| ||||| |||||||||||||||||
Sbjct: 507 ctgcccgcatcacttctccagacagc 532
Score = 75.8 bits (38), Expect = 5e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 634 acgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaatatcac 693
||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 214 acgtttgatcattgttattcacgaatagtggagcgtaacttgccatctgaacaatgtcac 273
Query: 694 tg 695
||
Sbjct: 274 tg 275
>gb|CW375131.1|CW375131 fsbb001f052f19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f052f19, DNA
sequence
Length = 557
Score = 127 bits (64), Expect = 2e-027
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 297 accttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtg 356
|||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || |||
Sbjct: 387 accttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagtg 328
Query: 357 gcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggcta 416
|||||||||||||||| |||||| |||||| || || || ||||||| ||||||||||
Sbjct: 327 gcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggcta 268
Query: 417 acggggtccgacccgaagtt 436
|| | ||||||||| |||||
Sbjct: 267 acagtgtccgacccaaagtt 248
Score = 103 bits (52), Expect = 2e-020
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 442 ccttcactctcaggaagctattctctgcatcctgccacgtgatcgcagacgcggccagcg 501
|||| ||||| |||||||||||||||| ||||||||||| || ||||| || || ||||
Sbjct: 132 cctttactctaaggaagctattctctgagtcctgccacgtaattgcagatgcagctagcg 73
Query: 502 aactcgagtaccgggaactgatattaaccggatggatcatggcgccgcttgactcgcgga 561
| || |||||||||||||| ||||||| |||||||||||||| || || ||||| ||||
Sbjct: 72 agcttgagtaccgggaactcatattaattggatggatcatggcaccactggactcacgga 13
Query: 562 aaatcgtctgca 573
||| |||||||
Sbjct: 12 aaagtgtctgca 1
Score = 60.0 bits (30), Expect = 3e-007
Identities = 50/54 (92%), Gaps = 2/54 (3%)
Strand = Plus / Minus
Query: 249 acctgcatctgctccgcg-gcgttgctcagctggcttttcaccg-gcgcaacct 300
||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct: 557 acctgcatctgctcccccagcgttgctcagctggcttttcaccgtgcgcaacct 504
>gb|AW283933.1|AW283933 LG1_282_F07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 220
Score = 119 bits (60), Expect = 4e-025
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 175 atcatatctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagt 234
|||| ||||| ||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct: 84 atcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagt 25
Query: 235 gaggagccagcgtgacctgcatct 258
||||||||||||||||||||||||
Sbjct: 24 gaggagccagcgtgacctgcatct 1
>gb|CW316445.1|CW316445 104_807_11472898_116_35843_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472898, DNA
sequence
Length = 605
Score = 115 bits (58), Expect = 6e-024
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 693 ctgttcttctccagaccagtgaggaaagcagcttcagccaacgaagcaagaagactgcct 752
||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||
Sbjct: 381 ctgtttttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagacttcct 322
Query: 753 ctacccgcgtcacttctccagacagc 778
|| ||||| |||||||||||||||||
Sbjct: 321 ctgcccgcatcacttctccagacagc 296
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 651 ttcacgaagagtggtgcgtaacttgccatctgaacaatatcactg 695
|||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 597 ttcacgaatagtggagcgtaacttgccatctgaacaatgtcactg 553
>gb|CL183897.1|CL183897 104_396_10898479_116_31924_319 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898479, DNA
sequence
Length = 781
Score = 107 bits (54), Expect = 2e-021
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 693 ctgttcttctccagaccagtgaggaaagcagcttcagccaacgaagcaagaagactgcct 752
||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| | |
Sbjct: 767 ctgtttttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagacttctt 708
Query: 753 ctacccgcgtcacttctccagacagc 778
|| ||||| |||||||||||||||||
Sbjct: 707 ctgcccgcatcacttctccagacagc 682
>gb|CN133913.1|CN133913 OX1_19_D01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 3', mRNA sequence
Length = 715
Score = 73.8 bits (37), Expect = 2e-011
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 590 tccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtc 649
||||||||||||||| || || ||||| ||||| || ||||||||| |||| ||||||||
Sbjct: 114 tccatagtgctgccatgaattaaagacaatagcatctgggttccacctttgatcattgtc 55
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttc 698
|| || |||||||| || |||||||||||| ||| || || ||||||
Sbjct: 54 atttacaaagagtggggcacaacttgccatctcaaccatgtcgctgttc 6
>gb|CW128898.1|CW128898 104_510_11114268_116_34757_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114268, DNA
sequence
Length = 620
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 203 agccagcgccagatcgaaggcggtgaaggagtgaggagccagcgtgacctgcatctgc 260
|||||| || |||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 134 agccagagcaagatcgaaggatgtgaatgagtgaggagccagcgtgacttgcatctgc 191
>gb|BI075496.1|BI075496 IP1_21_C05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 459
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 203 agccagcgccagatcgaaggcggtgaaggagtgaggagccagcgtgacctgcatctgc 260
|||||| || |||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 304 agccagagcaagatcgaaggatgtgaatgagtgaggagccagcgtgacttgcatctgc 247
>gb|BI075633.1|BI075633 IP1_23_B05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 310
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 203 agccagcgccagatcgaaggcggtgaaggagtgaggagccagcgtgacctgcatctgc 260
|||||| || |||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 155 agccagagcaagatcgaaggatgtgaatgagtgaggagccagcgtgacttgcatctgc 98
>gb|CW199473.1|CW199473 104_624_11183529_116_37058_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183529, DNA
sequence
Length = 664
Score = 65.9 bits (33), Expect = 5e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 546 ccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgctgccag 605
|||||||| || ||||||| |||||||||||||| || |||||||| || || |||||
Sbjct: 656 ccgcttgattcacggaaaaatgtctgcatccagtaactcggagttccgtactgttgccac 597
Query: 606 gagttgaagacgatagcgtccgggttcca 634
||||||||||| || ||||| ||| ||||
Sbjct: 596 gagttgaagactatcgcgtctgggatcca 568
>gb|CW199474.1|CW199474 104_624_11183529_148_36850_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183529, DNA
sequence
Length = 743
Score = 65.9 bits (33), Expect = 5e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 546 ccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgctgccag 605
|||||||| || ||||||| |||||||||||||| || |||||||| || || |||||
Sbjct: 296 ccgcttgattcacggaaaaatgtctgcatccagtaactcggagttccgtactgttgccac 355
Query: 606 gagttgaagacgatagcgtccgggttcca 634
||||||||||| || ||||| ||| ||||
Sbjct: 356 gagttgaagactatcgcgtctgggatcca 384
>gb|CW360333.1|CW360333 fsbb001f028g01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028g01, DNA
sequence
Length = 730
Score = 65.9 bits (33), Expect = 5e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 546 ccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgctgccag 605
|||||||| || ||||||| |||||||||||||| || |||||||| || || |||||
Sbjct: 306 ccgcttgattcacggaaaaatgtctgcatccagtaactcggagttccgtactgttgccac 247
Query: 606 gagttgaagacgatagcgtccgggttcca 634
||||||||||| || ||||| ||| ||||
Sbjct: 246 gagttgaagactatcgcgtctgggatcca 218
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 65.9 bits (33), Expect = 5e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 546 ccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgctgccag 605
|||||||| || ||||||| |||||||||||||| || |||||||| || || |||||
Sbjct: 6037 ccgcttgattcacggaaaaatgtctgcatccagtaactcggagttccgtactgttgccac 6096
Query: 606 gagttgaagacgatagcgtccgggttcca 634
||||||||||| || ||||| ||| ||||
Sbjct: 6097 gagttgaagactatcgcgtctgggatcca 6125
>gb|CW048319.1|CW048319 104_286_10513293_114_30214 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513293, DNA
sequence
Length = 485
Score = 60.0 bits (30), Expect = 3e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 297 accttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtg 356
|||||| | |||||||||||||| || || ||||| ||||| | || ||||| || |||
Sbjct: 308 accttggttgggttactgaaggaattttcatccatcacgtttgctgatgtgagaacagtg 249
Query: 357 gcggttgatcccagcgcgttga 378
|||||||||||||| |||||||
Sbjct: 248 gcggttgatcccagagcgttga 227
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 442 ccttcactctcaggaagctattctctgcatcctgccacgtgatcgcagacgcggccagcg 501
|||| ||||| |||||||| ||||||| |||||||| || ||||||||||| || ||||
Sbjct: 81 cctttactctaaggaagctgttctctgagtcctgccaggtaatcgcagacgctgcgagcg 22
Query: 502 aac 504
|||
Sbjct: 21 aac 19
>gb|CX622684.1|CX622684 GABR1_65_H12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 3', mRNA sequence
Length = 802
Score = 60.0 bits (30), Expect = 3e-007
Identities = 111/138 (80%)
Strand = Plus / Minus
Query: 590 tccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtc 649
||||||||||||||| |||||||||||||| || || ||| ||||| | | ||||||||
Sbjct: 212 tccatagtgctgccatgagttgaagacgatggcatctgggctccacctgcgatcattgtc 153
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|| || || || ||||| | |||||||||| ||| | |||||||||| | |||| ||
Sbjct: 152 atttacaaaaaggggtgcacagcttgccatctcaaccacatcactgttcctttccaatcc 93
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 92 aatgagaaatgcagcttc 75
>gb|CW040084.1|CW040084 104_273_10505880_114_30266 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505880, DNA
sequence
Length = 647
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 591 ccatagtgctgccaggagttgaagacgat 619
|||||||||||||| ||||||||||||||
Sbjct: 38 ccatagtgctgccatgagttgaagacgat 10
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,744
Number of Sequences: 832831
Number of extensions: 171744
Number of successful extensions: 46839
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46700
Number of HSP's gapped (non-prelim): 118
length of query: 780
length of database: 491,359,669
effective HSP length: 20
effective length of query: 760
effective length of database: 474,703,049
effective search space: 360774317240
effective search space used: 360774317240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)