BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF760357.1|CF760357 DSAF1_59_B09.b1_A011 Drought-stresse... 581 e-164
gb|CF760120.1|CF760120 DSAF1_55_G03.b1_A011 Drought-stresse... 571 e-161
gb|AW680350.1|AW680350 WS1_52_A07.g1_A002 Water-stressed 1 ... 555 e-156
gb|BG241299.1|BG241299 OV1_40_F05.b1_A002 Ovary 1 (OV1) Sor... 553 e-156
gb|AI724615.1|AI724615 RHIZ1_6_F03.y2_A001 Rhizome1 (RHIZ1)... 547 e-154
gb|BG241290.1|BG241290 OV1_40_E05.b1_A002 Ovary 1 (OV1) Sor... 543 e-153
gb|BG241300.1|BG241300 OV1_40_F06.b1_A002 Ovary 1 (OV1) Sor... 537 e-151
gb|AI724421.1|AI724421 RHIZ1_36_E03.y2_A001 Rhizome1 (RHIZ1... 523 e-147
gb|BG158912.1|BG158912 RHIZ2_42_C10.b1_A003 Rhizome2 (RHIZ2... 500 e-140
gb|BG241291.1|BG241291 OV1_40_E06.b1_A002 Ovary 1 (OV1) Sor... 494 e-138
gb|BG240967.1|BG240967 OV1_40_E05.g1_A002 Ovary 1 (OV1) Sor... 486 e-135
gb|BG240976.1|BG240976 OV1_40_F05.g1_A002 Ovary 1 (OV1) Sor... 486 e-135
gb|BG240968.1|BG240968 OV1_40_E06.g1_A002 Ovary 1 (OV1) Sor... 484 e-135
gb|BG158579.1|BG158579 RHIZ2_42_C10.g1_A003 Rhizome2 (RHIZ2... 444 e-123
gb|BG240977.1|BG240977 OV1_40_F06.g1_A002 Ovary 1 (OV1) Sor... 434 e-120
gb|CW203258.1|CW203258 104_629_11185536_148_36909_084 Sorgh... 228 5e-058
gb|CW496515.1|CW496515 fsbb001f288m24f0 Sorghum methylation... 228 5e-058
gb|CW184508.1|CW184508 104_600_11165187_148_36682_002 Sorgh... 206 2e-051
gb|BG239808.1|BG239808 OV1_29_C08.g1_A002 Ovary 1 (OV1) Sor... 194 7e-048
gb|BG240378.1|BG240378 OV1_29_C08.b1_A002 Ovary 1 (OV1) Sor... 194 7e-048
gb|CL152989.1|CL152989 104_337_10780392_114_31367_024 Sorgh... 113 2e-023
gb|CW276703.1|CW276703 104_750_11405633_148_35398_071 Sorgh... 113 2e-023
gb|CW493506.1|CW493506 fsbb001f284e22f0 Sorghum methylation... 113 2e-023
gb|CW493507.1|CW493507 fsbb001f284e22k0 Sorghum methylation... 113 2e-023
gb|CW069165.1|CW069165 104_318_10525715_1_30095 Sorghum met... 82 7e-014
gb|CW171608.1|CW171608 104_582_11155835_116_36525_040 Sorgh... 58 1e-006
gb|CW193437.1|CW193437 104_616_11179565_116_36781_027 Sorgh... 58 1e-006
gb|CW193438.1|CW193438 104_616_11179565_148_36782_027 Sorgh... 58 1e-006
gb|CW393317.1|CW393317 fsbb001f080f04f0 Sorghum methylation... 58 1e-006
gb|DV162814.1|DV162814 P1-N10 Sorghum bicolor greenbug-resp... 48 0.001
gb|CF675663.1|CF675663 MtN3 Subtractive cDNA library from s... 46 0.004
gb|DR831467.1|DR831467 MM71 Sorghum bicolor greenbug-respon... 46 0.004
gb|DV162815.1|DV162815 P3-J15 Sorghum bicolor greenbug-resp... 46 0.004
gb|DR831427.1|DR831427 MT54 Sorghum bicolor greenbug-respon... 44 0.015
gb|DR831556.2|DR831556 MT75 Sorghum bicolor greenbug-respon... 44 0.015
gb|DR831428.1|DR831428 MM77 Sorghum bicolor greenbug-respon... 40 0.24
>gb|CF760357.1|CF760357 DSAF1_59_B09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_59_B09_A011 5', mRNA sequence
Length = 516
Score = 581 bits (293), Expect = e-164
Identities = 405/441 (91%), Gaps = 16/441 (3%)
Strand = Plus / Minus
Query: 85 gatgattgtatagctacaagcatcccatagaaaaagggatagacattccacctccgaagt 144
||||||| ||||| ||||||| | |||||||||||||||||||||| | ||||||||
Sbjct: 484 gatgattacatagccacaagcaccacatagaaaaagggatagacattgc---tccgaagt 428
Query: 145 tatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatatcttttacat 203
||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct: 427 tatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatatcatttacat 368
Query: 204 cagttttcacgctgctagtgcta---------aagaacaatgattcactgt---gacctc 251
||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct: 367 cagttttcacgctgctagtgctatatcagcggaagaacaatgattcactgctgggacttg 308
Query: 252 gcaactggctccagtgcctcgatcattacaacactgtttcccctgataaccaccattcca 311
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 307 gcaactggctccagtgcctcgatcatgacaacactgtttcccctgataaccaccattcca 248
Query: 312 atatctgttttgtcatttccattgacctccacagtgttgtccaccaccagattcatgaac 371
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atatctgtcttgtcatttccattgacctccacagtgttgtccaccaccagattcatgaac 188
Query: 372 tggtcgaacccacgaagtgtgccgataacaacacggtttgcattcatcttaatctgaagc 431
|||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 187 tggtcgaatccccgaagtgtgccaataacaacacggtttgcattcagcttaatctgaagc 128
Query: 432 ttcttgtccatgtacttcttgagatccggaggctgccccgagcggctcatggtgacggct 491
||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||
Sbjct: 127 ttcttgtccatgtacttcttgagatccggaggctgtcccgagcggctcatggcggcggct 68
Query: 492 acctagcctcgaacgcgagag 512
|||||||||||||||||||||
Sbjct: 67 acctagcctcgaacgcgagag 47
>gb|CF760120.1|CF760120 DSAF1_55_G03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_G03_A011 5', mRNA sequence
Length = 461
Score = 571 bits (288), Expect = e-161
Identities = 385/416 (92%), Gaps = 16/416 (3%)
Strand = Plus / Minus
Query: 110 catagaaaaagggatagacattccacctccgaagttatgttgctgtgcaaaagcattagt 169
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 459 catagaaaaagggatagacattgc---tccgaagttatgttgctgtgcaaaagcattagt 403
Query: 170 caaa-tacaacagggtccactgatatcttttacatcagttttcacgctgctagtgcta-- 226
|||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 402 caaagtacaacagggttcactgatatcatttacatcagttttcacgctgctagtgctata 343
Query: 227 -------aagaacaatgattcactgt---gacctcgcaactggctccagtgcctcgatca 276
|||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 342 tcagcggaagaacaatgattcactgctgggacttggcaactggctccagtgcctcgatca 283
Query: 277 ttacaacactgtttcccctgataaccaccattccaatatctgttttgtcatttccattga 336
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 282 tgacaacactgtttcccctgataaccaccattccaatatctgtcttgtcatttccattga 223
Query: 337 cctccacagtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccga 396
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 222 cctccacagtgttgtccaccaccagattcatgaactggtcgaatccccgaagtgtgccaa 163
Query: 397 taacaacacggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagat 456
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 162 taacaacacggtttgcattcagcttaatctgaagcttcttgtccatgtacttcttgagat 103
Query: 457 ccggaggctgccccgagcggctcatggtgacggctacctagcctcgaacgcgagag 512
|||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 102 ccggaggctgtcccgagcggctcatggcggcggctacctagcctcgaacgcgagag 47
>gb|AW680350.1|AW680350 WS1_52_A07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 555 bits (280), Expect = e-156
Identities = 363/390 (93%), Gaps = 13/390 (3%)
Strand = Plus / Minus
Query: 136 ctccgaagttatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatat 194
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 501 ctccgaagttatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatat 442
Query: 195 cttttacatcagttttcacgctgctagtgcta---------aagaacaatgattcactgt 245
| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 catttacatcagttttcacgctgctagtgctatatcagcggaagaacaatgattcactgc 382
Query: 246 ---gacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgataacc 302
||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tgggacttggcaactggctccagtgcctcgatcatgacaacactgtttcccctgataacc 322
Query: 303 accattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccaccaga 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accattccaatatctgtcttgtcatttccattgacctccacagtgttgtccaccaccaga 262
Query: 363 ttcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcatctta 422
||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 261 ttcatgaactggtcgaatccccgaagtgtgccaataacaacacggtttgcattcagctta 202
Query: 423 atctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggctcatg 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 atctgaagcttcttgtccatgtacttcttgagatccggaggctgtcccgagcggctcatg 142
Query: 483 gtgacggctacctagcctcgaacgcgagag 512
| | ||||||||||||||||||||||||||
Sbjct: 141 gcggcggctacctagcctcgaacgcgagag 112
>gb|BG241299.1|BG241299 OV1_40_F05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 507
Score = 553 bits (279), Expect = e-156
Identities = 362/389 (93%), Gaps = 13/389 (3%)
Strand = Plus / Minus
Query: 137 tccgaagttatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatatc 195
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 507 tccgaagttatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatatc 448
Query: 196 ttttacatcagttttcacgctgctagtgcta---------aagaacaatgattcactgt- 245
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 447 atttacatcagttttcacgctgctagtgctatatcagcggaagaacaatgattcactgct 388
Query: 246 --gacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgataacca 303
||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 387 gggacttggcaactggctccagtgcctcgatcatgacaacactgtttcccctgataacca 328
Query: 304 ccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccaccagat 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccattccaatatctgtcttgtcatttccattgacctccacagtgttgtccaccaccagat 268
Query: 364 tcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcatcttaa 423
|||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||
Sbjct: 267 tcatgaactggtcgaatccccgaagtgtgccaataacaacacggtttgcattcagcttaa 208
Query: 424 tctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggctcatgg 483
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 207 tctgaagcttcttgtccatgtacttcttgagatccggaggctgtcccgagcggctcatgg 148
Query: 484 tgacggctacctagcctcgaacgcgagag 512
| ||||||||||||||||||||||||||
Sbjct: 147 cggcggctacctagcctcgaacgcgagag 119
>gb|AI724615.1|AI724615 RHIZ1_6_F03.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 444
Score = 547 bits (276), Expect = e-154
Identities = 362/390 (92%), Gaps = 13/390 (3%)
Strand = Plus / Minus
Query: 136 ctccgaagttatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatat 194
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 443 ctccgaagttatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatat 384
Query: 195 cttttacatcagttttcacgctgctagtgcta---------aagaacaatgattcactgt 245
| |||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 383 catttacatcagttttcaagctgctagtgctatatcagcggaagaacaatgattcactgc 324
Query: 246 ---gacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgataacc 302
||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 323 tgggacttggcaactggctccagtgcctcgatcatgacaacactgtttcccctgataacc 264
Query: 303 accattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccaccaga 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 accattccaatatctgtcttgtcatttccattgacctccacagtgttgtccaccaccaga 204
Query: 363 ttcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcatctta 422
||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 203 ttcatgaactggtcgaatccccgaagtgtgccaataacaacacggtttgcattcagctta 144
Query: 423 atctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggctcatg 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 143 atctgaagcttcttgtccatgtacttcttgagatccggaggctgtcccgagcggctcatg 84
Query: 483 gtgacggctacctagcctcgaacgcgagag 512
| | ||||||||||||||||||||||||||
Sbjct: 83 gcggcggctacctagcctcgaacgcgagag 54
>gb|BG241290.1|BG241290 OV1_40_E05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 502
Score = 543 bits (274), Expect = e-153
Identities = 357/384 (92%), Gaps = 13/384 (3%)
Strand = Plus / Minus
Query: 142 agttatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatatctttta 200
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 502 agttatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatatcattta 443
Query: 201 catcagttttcacgctgctagtgcta---------aagaacaatgattcactgt---gac 248
|||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 442 catcagttttcacgctgctagtgctatatcagcggaagaacaatgattcactgctgggac 383
Query: 249 ctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgataaccaccatt 308
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 ttggcaactggctccagtgcctcgatcatgacaacactgtttcccctgataaccaccatt 323
Query: 309 ccaatatctgttttgtcatttccattgacctccacagtgttgtccaccaccagattcatg 368
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccaatatctgtcttgtcatttccattgacctccacagtgttgtccaccaccagattcatg 263
Query: 369 aactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcatcttaatctga 428
||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 262 aactggtcgaatccccgaagtgtgccaataacaacacggtttgcattcagcttaatctga 203
Query: 429 agcttcttgtccatgtacttcttgagatccggaggctgccccgagcggctcatggtgacg 488
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct: 202 agcttcttgtccatgtacttcttgagatccggaggctgtcccgagcggctcatggcggcg 143
Query: 489 gctacctagcctcgaacgcgagag 512
||||||||||||||||||||||||
Sbjct: 142 gctacctagcctcgaacgcgagag 119
>gb|BG241300.1|BG241300 OV1_40_F06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 537 bits (271), Expect = e-151
Identities = 357/385 (92%), Gaps = 13/385 (3%)
Strand = Plus / Minus
Query: 141 aagttatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatatctttt 199
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 503 aagttatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatatcattt 444
Query: 200 acatcagttttcacgctgctagtgcta---------aagaacaatgattcactgt---ga 247
||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 443 acatcagttttcacgctgctagtgctatatcagcggaagaacaatgattcactgctggga 384
Query: 248 cctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgataaccaccat 307
| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 383 cttggcaactggctccagtgcctcgatcatgacaacactgtttcccgtgataaccaccat 324
Query: 308 tccaatatctgttttgtcatttccattgacctccacagtgttgtccaccaccagattcat 367
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccaatatctgtcttgtcatttccattgacctccacagtgttgtccaccaccagattcat 264
Query: 368 gaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcatcttaatctg 427
|||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 263 gaactggtcgaatccccgaagtgtgccaataacaacacggtttgcattcagcttaatctg 204
Query: 428 aagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggctcatggtgac 487
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
Sbjct: 203 aagcttcttgtccatgtacttcttgagatccggaggctgtcccgagcggctcatggcggc 144
Query: 488 ggctacctagcctcgaacgcgagag 512
|||||||||||||||||||||||||
Sbjct: 143 ggctacctagcctcgaacgcgagag 119
>gb|AI724421.1|AI724421 RHIZ1_36_E03.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 448
Score = 523 bits (264), Expect = e-147
Identities = 359/390 (92%), Gaps = 13/390 (3%)
Strand = Plus / Minus
Query: 136 ctccgaagttatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatat 194
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 443 ctccgaagctatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatat 384
Query: 195 cttttacatcagttttcacgctgctagtgcta---------aagaacaatgattcactgt 245
| ||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 383 catttacggcagttttcaagctgctagtgctatatcagcggaagaacaatgattcactgc 324
Query: 246 ---gacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgataacc 302
||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 323 tgggacttggcaactggctccagtgcctcgatcatgacaacactgtttcccctgataacc 264
Query: 303 accattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccaccaga 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 accattccaatatctgtcttgtcatttccattgacctccacagtgttgtccaccaccaga 204
Query: 363 ttcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcatctta 422
||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 203 ttcatgaactggtcgaatccccgaagtgtgccaataacaacacggtttgcattcagctta 144
Query: 423 atctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggctcatg 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 143 atctgaagcttcttgtccatgtacttcttgagatccggaggctgtcccgagcggctcatg 84
Query: 483 gtgacggctacctagcctcgaacgcgagag 512
| | ||||||||||||||||||||||||||
Sbjct: 83 gcggcggctacctagcctcgaacgcgagag 54
>gb|BG158912.1|BG158912 RHIZ2_42_C10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 509
Score = 500 bits (252), Expect = e-140
Identities = 355/387 (91%), Gaps = 18/387 (4%)
Strand = Plus / Minus
Query: 110 catagaaaaagggatagacattccacctccgaagttatgttgctgtgcaaaagcattagt 169
||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 439 cataggaaaagggatagacattgc---tccgaagttatgttgctgtgcaaaagcattagt 383
Query: 170 caaa-tacaacagggtccactgatatcttttacatcagttttcacgctgctagtgcta-- 226
|||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct: 382 caaagtacaacagggttcactgatatcatttacatcagttttc--gctgctagtgctata 325
Query: 227 -------aagaacaatgattcactgt---gacctcgcaactggctccagtgcctcgatca 276
|||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 324 tcagcggaagaacaatgattcactgctgggacttggcaactggctccagtgcctcgatca 265
Query: 277 ttacaacactgtttcccctgataaccaccattccaatatctgttttgtcatttccattga 336
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 tgacaacactgtttcccctgataaccaccattccaatatctgtcttgtcatttccattga 205
Query: 337 cctccacagtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccga 396
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 204 cctccacagtgttgtccaccaccagattcatgaactggtcgaatccccgaagtgtgccaa 145
Query: 397 taacaacacggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagat 456
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 144 taacaacacggtttgcattcagcttaatctgaagcttcttgtccatgtacttcttgagat 85
Query: 457 ccggaggctgccccgagcggctcatgg 483
|||||||||| ||||||||||||||||
Sbjct: 84 ccggaggctgtcccgagcggctcatgg 58
>gb|BG241291.1|BG241291 OV1_40_E06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 494 bits (249), Expect = e-138
Identities = 325/351 (92%), Gaps = 12/351 (3%)
Strand = Plus / Minus
Query: 174 tacaacagggtccactgatatcttttacatcagttttcacgctgctagtgcta------- 226
||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 469 tacaacagggttcactgatatcatttacatcagttttcacgctgctagtgctatatcagc 410
Query: 227 --aagaacaatgattcactgt---gacctcgcaactggctccagtgcctcgatcattaca 281
|||||||||||||||||| ||| | |||||||||||||||||||||||||| |||
Sbjct: 409 ggaagaacaatgattcactgctgggacttggcaactggctccagtgcctcgatcatgaca 350
Query: 282 acactgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctcc 341
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 349 acactgtttcccctgataaccaccattccaatatctgtcttgtcatttccattgacctcc 290
Query: 342 acagtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataaca 401
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 289 acagtgttgtccaccaccagattcatgaactggtcgaatccccgaagtgtgccaataaca 230
Query: 402 acacggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccgga 461
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 acacggtttgcattcagcttaatctgaagcttcttgtccatgtacttcttgagatccgga 170
Query: 462 ggctgccccgagcggctcatggtgacggctacctagcctcgaacgcgagag 512
||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 169 ggctgtcccgagcggctcatggcggcggctacctagcctcgaacgcgagag 119
>gb|BG240967.1|BG240967 OV1_40_E05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 467
Score = 486 bits (245), Expect = e-135
Identities = 321/347 (92%), Gaps = 12/347 (3%)
Strand = Plus / Minus
Query: 178 acagggtccactgatatcttttacatcagttttcacgctgctagtgcta---------aa 228
||||||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 465 acagggttcactgatatcatttacatcagttttcacgctgctagtgctatatcagcggaa 406
Query: 229 gaacaatgattcactgt---gacctcgcaactggctccagtgcctcgatcattacaacac 285
|||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||
Sbjct: 405 gaacaatgattcactgctgggacttggcaactggctccagtgcctcgatcatgacaacac 346
Query: 286 tgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccacag 345
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 345 tgtttcccctgataaccaccattccaatatctgtcttgtcatttccattgacctccacag 286
Query: 346 tgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaacac 405
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 285 tgttgtccaccaccagattcatgaactggtcgaatccccgaagtgtgccaataacaacac 226
Query: 406 ggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggct 465
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ggtttgcattcagcttaatctgaagcttcttgtccatgtacttcttgagatccggaggct 166
Query: 466 gccccgagcggctcatggtgacggctacctagcctcgaacgcgagag 512
| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 165 gtcccgagcggctcatggcggcggctacctagcctcgaacgcgagag 119
>gb|BG240976.1|BG240976 OV1_40_F05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 467
Score = 486 bits (245), Expect = e-135
Identities = 321/347 (92%), Gaps = 12/347 (3%)
Strand = Plus / Minus
Query: 178 acagggtccactgatatcttttacatcagttttcacgctgctagtgcta---------aa 228
||||||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 465 acagggttcactgatatcatttacatcagttttcacgctgctagtgctatatcagcggaa 406
Query: 229 gaacaatgattcactgt---gacctcgcaactggctccagtgcctcgatcattacaacac 285
|||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||
Sbjct: 405 gaacaatgattcactgctgggacttggcaactggctccagtgcctcgatcatgacaacac 346
Query: 286 tgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccacag 345
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 345 tgtttcccctgataaccaccattccaatatctgtcttgtcatttccattgacctccacag 286
Query: 346 tgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaacac 405
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 285 tgttgtccaccaccagattcatgaactggtcgaatccccgaagtgtgccaataacaacac 226
Query: 406 ggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggct 465
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ggtttgcattcagcttaatctgaagcttcttgtccatgtacttcttgagatccggaggct 166
Query: 466 gccccgagcggctcatggtgacggctacctagcctcgaacgcgagag 512
| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 165 gtcccgagcggctcatggcggcggctacctagcctcgaacgcgagag 119
>gb|BG240968.1|BG240968 OV1_40_E06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 484 bits (244), Expect = e-135
Identities = 320/346 (92%), Gaps = 12/346 (3%)
Strand = Plus / Minus
Query: 179 cagggtccactgatatcttttacatcagttttcacgctgctagtgcta---------aag 229
|||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 464 cagggttcactgatatcatttacatcagttttcacgctgctagtgctatatcagcggaag 405
Query: 230 aacaatgattcactgt---gacctcgcaactggctccagtgcctcgatcattacaacact 286
||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 404 aacaatgattcactgctgggacttggcaactggctccagtgcctcgatcatgacaacact 345
Query: 287 gtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccacagt 346
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 344 gtttcccctgataaccaccattccaatatctgtcttgtcatttccattgacctccacagt 285
Query: 347 gttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaacacg 406
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 284 gttgtccaccaccagattcatgaactggtcgaatccccgaagtgtgccaataacaacacg 225
Query: 407 gtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggctg 466
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gtttgcattcagcttaatctgaagcttcttgtccatgtacttcttgagatccggaggctg 165
Query: 467 ccccgagcggctcatggtgacggctacctagcctcgaacgcgagag 512
|||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 164 tcccgagcggctcatggcggcggctacctagcctcgaacgcgagag 119
>gb|BG158579.1|BG158579 RHIZ2_42_C10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 608
Score = 444 bits (224), Expect = e-123
Identities = 324/355 (91%), Gaps = 18/355 (5%)
Strand = Plus / Minus
Query: 110 catagaaaaagggatagacattccacctccgaagttatgttgctgtgcaaaagcattagt 169
||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 350 cataggaaaagggatagacattgc---tccgaagttatgttgctgtgcaaaagcattagt 294
Query: 170 caaa-tacaacagggtccactgatatcttttacatcagttttcacgctgctagtgcta-- 226
|||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct: 293 caaagtacaacagggttcactgatatcatttacatcagttttc--gctgctagtgctata 236
Query: 227 -------aagaacaatgattcactgt---gacctcgcaactggctccagtgcctcgatca 276
|||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 235 tcagcggaagaacaatgattcactgctgggacttggcaactggctccagtgcctcgatca 176
Query: 277 ttacaacactgtttcccctgataaccaccattccaatatctgttttgtcatttccattga 336
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 175 tgacaacactgtttcccctgataaccaccattccaatatctgtcttgtcatttccattga 116
Query: 337 cctccacagtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccga 396
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 115 cctccacagtgttgtccaccaccagattcatgaactggtcgaatccccgaagtgtgccaa 56
Query: 397 taacaacacggtttgcattcatcttaatctgaagcttcttgtccatgtacttctt 451
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 55 taacaacacggtttgcattcagcttaatctgaagcttcttgtccatgtacttctt 1
>gb|BG240977.1|BG240977 OV1_40_F06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 360
Score = 434 bits (219), Expect = e-120
Identities = 272/289 (94%), Gaps = 3/289 (1%)
Strand = Plus / Minus
Query: 227 aagaacaatgattcactgt---gacctcgcaactggctccagtgcctcgatcattacaac 283
|||||||||||||||||| ||| | |||||||||||||||||||| ||||| |||||
Sbjct: 348 aagaacaatgattcactgctgggacttggcaactggctccagtgcctctatcatgacaac 289
Query: 284 actgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccac 343
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 288 actgtttcccctgataaccaccattccaatatctgtcttgtcatttccattgacctccac 229
Query: 344 agtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaac 403
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 228 agtgttgtccaccaccagattcatgaactggtcgaatccccgaagtgtgccaataacaac 169
Query: 404 acggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggagg 463
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 acggtttgcattcagcttaatctgaagcttcttgtccatgtacttcttgagatccggagg 109
Query: 464 ctgccccgagcggctcatggtgacggctacctagcctcgaacgcgagag 512
||| |||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 108 ctgtcccgagcggctcatggcggcggctacctatcctcgaacgcgagag 60
>gb|CW203258.1|CW203258 104_629_11185536_148_36909_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185536, DNA
sequence
Length = 649
Score = 228 bits (115), Expect = 5e-058
Identities = 203/231 (87%), Gaps = 16/231 (6%)
Strand = Plus / Minus
Query: 85 gatgattgtatagctacaagcatcccatagaaaaagggatagacattccacctccgaagt 144
||||||| ||||| ||||||| | |||||||||||||||||||||| | ||||||||
Sbjct: 235 gatgattacatagccacaagcaccacatagaaaaagggatagacattgc---tccgaagt 179
Query: 145 tatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatatcttttacat 203
||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct: 178 tatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatatcatttacat 119
Query: 204 cagttttcacgctgctagtgcta---------aagaacaatgattca---ctgtgacctc 251
||||||||||||||||||||||| ||||||||||||||| ||| ||| |
Sbjct: 118 cagttttcacgctgctagtgctatatcagcggaagaacaatgattcactgctgggacttg 59
Query: 252 gcaactggctccagtgcctcgatcattacaacactgtttcccctgataacc 302
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 58 gcaactggctccagtgcctcgatcatgacaacactgtttcccctgataacc 8
>gb|CW496515.1|CW496515 fsbb001f288m24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288m24, DNA
sequence
Length = 737
Score = 228 bits (115), Expect = 5e-058
Identities = 203/231 (87%), Gaps = 16/231 (6%)
Strand = Plus / Minus
Query: 85 gatgattgtatagctacaagcatcccatagaaaaagggatagacattccacctccgaagt 144
||||||| ||||| ||||||| | |||||||||||||||||||||| | ||||||||
Sbjct: 258 gatgattacatagccacaagcaccacatagaaaaagggatagacattgc---tccgaagt 202
Query: 145 tatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatatcttttacat 203
||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct: 201 tatgttgctgtgcaaaagcattagtcaaagtacaacagggttcactgatatcatttacat 142
Query: 204 cagttttcacgctgctagtgcta---------aagaacaatgattca---ctgtgacctc 251
||||||||||||||||||||||| ||||||||||||||| ||| ||| |
Sbjct: 141 cagttttcacgctgctagtgctatatcagcggaagaacaatgattcactgctgggacttg 82
Query: 252 gcaactggctccagtgcctcgatcattacaacactgtttcccctgataacc 302
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 81 gcaactggctccagtgcctcgatcatgacaacactgtttcccctgataacc 31
>gb|CW184508.1|CW184508 104_600_11165187_148_36682_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165187, DNA
sequence
Length = 679
Score = 206 bits (104), Expect = 2e-051
Identities = 119/124 (95%)
Strand = Plus / Plus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 343 accaccattccaatatctgtcttgtcatttccattgacctccacagtgttgtccaccacc 402
Query: 360 agattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcatc 419
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |
Sbjct: 403 agattcatgaactggtcgaatccccgaagtgtgccaataacaacacggtttgcattcagc 462
Query: 420 ttaa 423
||||
Sbjct: 463 ttaa 466
Score = 167 bits (84), Expect = 2e-039
Identities = 152/174 (87%), Gaps = 13/174 (7%)
Strand = Plus / Plus
Query: 142 agttatgttgctgtgcaaaagcattagtcaaa-tacaacagggtccactgatatctttta 200
|||||||||||||||||||||||||||| | ||||||||||| |||||||||| ||||
Sbjct: 12 agttatgttgctgtgcaaaagcattagttttagtacaacagggttcactgatatcattta 71
Query: 201 catcagttttcacgctgctagtgcta---------aagaacaatgattca---ctgtgac 248
|||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct: 72 catcagttttcacgctgctagtgctatatcagcggaagaacaatgattcactgctgggac 131
Query: 249 ctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgataacc 302
| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 132 ttggcaactggctccagtgcctcgatcatgacaacactgtttcccctgataacc 185
>gb|BG239808.1|BG239808 OV1_29_C08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 194 bits (98), Expect = 7e-048
Identities = 200/234 (85%)
Strand = Plus / Minus
Query: 255 actggctccagtgcctcgatcattacaacactgtttcccctgataaccaccattccaata 314
||||| || ||||| || ||||| |||||||| ||||||||||| |||||||| || ||
Sbjct: 355 actggttcgagtgcttcaatcatgacaacactatttcccctgatgaccaccatcccgatg 296
Query: 315 tctgttttgtcatttccattgacctccacagtgttgtccaccaccagattcatgaactgg 374
|| | || || |||||||||||||| || |||||||| | |||||||||||||||||
Sbjct: 295 tcattcttttcgtttccattgacctcaactgtgttgtcaatgaccagattcatgaactga 236
Query: 375 tcgaacccacgaagtgtgccgataacaacacggtttgcattcatcttaatctgaagcttc 434
|| || |||||||||||||| || ||||||||||||||||||| ||| || || ||||||
Sbjct: 235 tcaaatccacgaagtgtgccaatgacaacacggtttgcattcagcttgatttggagcttc 176
Query: 435 ttgtccatgtacttcttgagatccggaggctgccccgagcggctcatggtgacg 488
||||||||||| ||||| ||||||||||||||||| || |||||||||| ||||
Sbjct: 175 ttgtccatgtatttcttcagatccggaggctgccctgaccggctcatggcgacg 122
>gb|BG240378.1|BG240378 OV1_29_C08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 194 bits (98), Expect = 7e-048
Identities = 200/234 (85%)
Strand = Plus / Minus
Query: 255 actggctccagtgcctcgatcattacaacactgtttcccctgataaccaccattccaata 314
||||| || ||||| || ||||| |||||||| ||||||||||| |||||||| || ||
Sbjct: 358 actggttcgagtgcttcaatcatgacaacactatttcccctgatgaccaccatcccgatg 299
Query: 315 tctgttttgtcatttccattgacctccacagtgttgtccaccaccagattcatgaactgg 374
|| | || || |||||||||||||| || |||||||| | |||||||||||||||||
Sbjct: 298 tcattcttttcgtttccattgacctcaactgtgttgtcaatgaccagattcatgaactga 239
Query: 375 tcgaacccacgaagtgtgccgataacaacacggtttgcattcatcttaatctgaagcttc 434
|| || |||||||||||||| || ||||||||||||||||||| ||| || || ||||||
Sbjct: 238 tcaaatccacgaagtgtgccaatgacaacacggtttgcattcagcttgatttggagcttc 179
Query: 435 ttgtccatgtacttcttgagatccggaggctgccccgagcggctcatggtgacg 488
||||||||||| ||||| ||||||||||||||||| || |||||||||| ||||
Sbjct: 178 ttgtccatgtatttcttcagatccggaggctgccctgaccggctcatggcgacg 125
>gb|CL152989.1|CL152989 104_337_10780392_114_31367_024 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780392, DNA
sequence
Length = 533
Score = 113 bits (57), Expect = 2e-023
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatggtgacggctacctagcctcga 503
||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct: 180 tacttcttgagatccggaggctgtcccgagcggctcatggcggcggctacctagcctcga 239
Query: 504 acgcgagag 512
|||||||||
Sbjct: 240 acgcgagag 248
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 419 cttaatctgaagcttcttgtccatgtac 446
|||| |||||||||||||||||||||||
Sbjct: 61 cttactctgaagcttcttgtccatgtac 88
>gb|CW276703.1|CW276703 104_750_11405633_148_35398_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405633, DNA
sequence
Length = 721
Score = 113 bits (57), Expect = 2e-023
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatggtgacggctacctagcctcga 503
||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct: 119 tacttcttgagatccggaggctgtcccgagcggctcatggcggcggctacctagcctcga 178
Query: 504 acgcgagag 512
|||||||||
Sbjct: 179 acgcgagag 187
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 424 tctgaagcttcttgtccatgtac 446
|||||||||||||||||||||||
Sbjct: 5 tctgaagcttcttgtccatgtac 27
>gb|CW493506.1|CW493506 fsbb001f284e22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284e22, DNA
sequence
Length = 673
Score = 113 bits (57), Expect = 2e-023
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatggtgacggctacctagcctcga 503
||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct: 514 tacttcttgagatccggaggctgtcccgagcggctcatggcggcggctacctagcctcga 573
Query: 504 acgcgagag 512
|||||||||
Sbjct: 574 acgcgagag 582
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 419 cttaatctgaagcttcttgtccatgtac 446
|||| |||||||||||||||||||||||
Sbjct: 395 cttactctgaagcttcttgtccatgtac 422
>gb|CW493507.1|CW493507 fsbb001f284e22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284e22, DNA
sequence
Length = 685
Score = 113 bits (57), Expect = 2e-023
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatggtgacggctacctagcctcga 503
||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct: 441 tacttcttgagatccggaggctgtcccgagcggctcatggcggcggctacctagcctcga 382
Query: 504 acgcgagag 512
|||||||||
Sbjct: 381 acgcgagag 373
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 419 cttaatctgaagcttcttgtccatgtac 446
|||| |||||||||||||||||||||||
Sbjct: 560 cttactctgaagcttcttgtccatgtac 533
>gb|CW069165.1|CW069165 104_318_10525715_1_30095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525715, DNA
sequence
Length = 255
Score = 81.8 bits (41), Expect = 7e-014
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 357 accagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattc 416
||||||||||||||||| || || |||||||||||||| || ||||||||||||||||||
Sbjct: 2 accagattcatgaactgatcaaatccacgaagtgtgccaatgacaacacggtttgcattc 61
Query: 417 a 417
|
Sbjct: 62 a 62
>gb|CW171608.1|CW171608 104_582_11155835_116_36525_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155835, DNA
sequence
Length = 690
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatggtgacg 488
|||||||| ||||||||||||||||| || |||||||||| ||||
Sbjct: 50 tacttcttcagatccggaggctgccctgaccggctcatggcgacg 6
>gb|CW193437.1|CW193437 104_616_11179565_116_36781_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179565, DNA
sequence
Length = 670
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatggtgacg 488
|||||||| ||||||||||||||||| || |||||||||| ||||
Sbjct: 458 tacttcttcagatccggaggctgccctgaccggctcatggcgacg 502
>gb|CW193438.1|CW193438 104_616_11179565_148_36782_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179565, DNA
sequence
Length = 739
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatggtgacg 488
|||||||| ||||||||||||||||| || |||||||||| ||||
Sbjct: 295 tacttcttcagatccggaggctgccctgaccggctcatggcgacg 251
>gb|CW393317.1|CW393317 fsbb001f080f04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080f04, DNA
sequence
Length = 585
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatggtgacg 488
|||||||| ||||||||||||||||| || |||||||||| ||||
Sbjct: 116 tacttcttcagatccggaggctgccctgaccggctcatggcgacg 160
>gb|DV162814.1|DV162814 P1-N10 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 198
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 598 cgtacctcggccgcgaccacgcta 621
||||||||||||||||||||||||
Sbjct: 94 cgtacctcggccgcgaccacgcta 117
>gb|CF675663.1|CF675663 MtN3 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone MtN3 similar to
MtN3-like protein, mRNA sequence
Length = 194
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 143 gtacctcggccgcgaccacgcta 165
>gb|DR831467.1|DR831467 MM71 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 751
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 127 gtacctcggccgcgaccacgcta 105
>gb|DV162815.1|DV162815 P3-J15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 229
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 40 gtacctcggccgcgaccacgcta 18
>gb|DR831427.1|DR831427 MT54 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 199
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 599 gtacctcggccgcgaccacgct 620
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|DR831556.2|DR831556 MT75 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 309
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 599 gtacctcggccgcgaccacgct 620
||||||||||||||||||||||
Sbjct: 205 gtacctcggccgcgaccacgct 226
>gb|DR831428.1|DR831428 MM77 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 299
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 599 gtacctcggccgcgaccacg 618
||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacg 3
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,486
Number of Sequences: 832831
Number of extensions: 143486
Number of successful extensions: 39331
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39209
Number of HSP's gapped (non-prelim): 81
length of query: 621
length of database: 491,359,669
effective HSP length: 19
effective length of query: 602
effective length of database: 475,535,880
effective search space: 286272599760
effective search space used: 286272599760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)