BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161254.2.1
(1192 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-tre... 967 0.0
gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1... 811 0.0
gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infecte... 743 0.0
gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-tre... 722 0.0
gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed see... 670 0.0
gb|BF657255.1|BF657255 OV2_22_E11.b1_A002 Ovary 2 (OV2) Sor... 618 e-175
gb|CD463169.1|CD463169 ETH1_42_E06.g1_A002 Ethylene-treated... 601 e-170
gb|BI140713.1|BI140713 IP1_52_H01.b1_A002 Immature pannicle... 579 e-163
gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) So... 573 e-161
gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle... 563 e-158
gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed see... 551 e-155
gb|BG322938.1|BG322938 EM1_15_H09.b1_A002 Embryo 1 (EM1) So... 391 e-106
gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2... 333 2e-089
gb|CF072403.1|CF072403 FE1_2_H07.g1_A002 Iron-deficient see... 319 3e-085
gb|BM326547.1|BM326547 PIC1_58_D07.b1_A002 Pathogen-infecte... 317 1e-084
gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorgh... 315 5e-084
gb|CW262292.1|CW262292 104_729_11229977_148_35205_067 Sorgh... 285 5e-075
gb|BI075789.1|BI075789 IP1_21_C05.b1_A002 Immature pannicle... 232 6e-059
gb|BI075931.1|BI075931 IP1_23_B05.b1_A002 Immature pannicle... 232 6e-059
gb|AW564124.1|AW564124 LG1_282_F07.b1_A002 Light Grown 1 (L... 208 9e-052
gb|CW122132.1|CW122132 104_500_11110443_116_34667_004 Sorgh... 206 3e-051
gb|BZ423213.1|BZ423213 id46f11.g1 WGS-SbicolorF (DH5a methy... 196 3e-048
gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation... 190 2e-046
gb|BG488202.1|BG488202 RHIZ2_60_G05.b1_A003 Rhizome2 (RHIZ2... 184 1e-044
gb|CF072886.1|CF072886 FE1_26_E01.g1_A002 Iron-deficient se... 168 7e-040
gb|BZ345347.1|BZ345347 hr49h09.b1 WGS-SbicolorF (JM107 adap... 163 5e-038
gb|BG273563.1|BG273563 OV2_27_C04.b1_A002 Ovary 2 (OV2) Sor... 163 5e-038
gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficien... 147 3e-033
gb|CW792157.1|CW792157 SP__Ba0089F13.f SP__Ba Sorghum propi... 143 4e-032
gb|BZ421859.1|BZ421859 id46f11.b1 WGS-SbicolorF (DH5a methy... 137 3e-030
gb|CW419756.1|CW419756 fsbb001f124m03k0 Sorghum methylation... 135 1e-029
gb|CW089678.1|CW089678 104_435_10948844_114_32597_078 Sorgh... 123 4e-026
gb|CW089679.1|CW089679 104_435_10948844_116_32599_078 Sorgh... 123 4e-026
gb|CW219439.1|CW219439 104_653_11196765_116_37141_087 Sorgh... 101 1e-019
gb|CW219440.1|CW219440 104_653_11196765_148_37142_087 Sorgh... 101 1e-019
gb|BG357728.1|BG357728 OV2_29_F03.b1_A002 Ovary 2 (OV2) Sor... 101 1e-019
gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stres... 101 1e-019
gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassino... 98 2e-018
gb|CW469203.1|CW469203 fsbb001f221m21k0 Sorghum methylation... 94 4e-017
gb|CW190352.1|CW190352 104_612_11174457_148_36834_047 Sorgh... 92 1e-016
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 92 1e-016
gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle... 74 3e-011
gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorgh... 70 5e-010
gb|BG556928.1|BG556928 EM1_40_D05.b1_A002 Embryo 1 (EM1) So... 64 3e-008
gb|CW219722.1|CW219722 104_654_11196948_116_37152_048 Sorgh... 62 1e-007
gb|CW288351.1|CW288351 104_766_11411905_116_35529_001 Sorgh... 62 1e-007
gb|CW288352.1|CW288352 104_766_11411905_148_35533_001 Sorgh... 62 1e-007
gb|CW409693.1|CW409693 fsbb001f104b19k0 Sorghum methylation... 62 1e-007
gb|CD230559.1|CD230559 SS1_44_G04.g1_A012 Salt-stressed see... 60 5e-007
gb|BZ349906.1|BZ349906 hr47b09.g1 WGS-SbicolorF (JM107 adap... 56 8e-006
gb|CW327351.1|CW327351 104_823_11478699_148_35980_016 Sorgh... 56 8e-006
gb|BG052982.1|BG052982 RHIZ2_15_H04.b1_A003 Rhizome2 (RHIZ2... 56 8e-006
gb|CW327350.1|CW327350 104_823_11478699_116_35979_016 Sorgh... 50 5e-004
gb|CW159383.1|CW159383 104_565_11149329_116_36407_039 Sorgh... 48 0.002
gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorgh... 48 0.002
gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorgh... 48 0.002
gb|CF430791.1|CF430791 NIT1_2_H01.g1_A002 Nitrogen-deficien... 48 0.002
gb|CW156761.1|CW156761 104_559_11146862_148_36373_049 Sorgh... 44 0.029
gb|CW187629.1|CW187629 104_607_11172573_116_36725_095 Sorgh... 44 0.029
gb|CW239359.1|CW239359 104_697_11217614_148_37421_053 Sorgh... 44 0.029
gb|CW434095.1|CW434095 fsbb001f149j24k0 Sorghum methylation... 42 0.12
gb|CL700550.1|CL700550 SP__Ba0062J20.r SP__Ba Sorghum propi... 40 0.46
gb|CW187630.1|CW187630 104_607_11172573_148_36726_095 Sorgh... 40 0.46
>gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 5', mRNA sequence
Length = 704
Score = 967 bits (488), Expect = 0.0
Identities = 659/717 (91%), Gaps = 13/717 (1%)
Strand = Plus / Plus
Query: 170 tccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcggatg 229
||||||||||| |||||||||| ||||||| ||||||||| |||| | |||||
Sbjct: 1 tccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtggatg 53
Query: 230 catgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatggatctca 289
|||||||||||||||||||||| || ||| | |||||||||||||||||||||||
Sbjct: 54 catgacacactcattgcattagtgcttac------cacaagtggaagcctatggatctca 107
Query: 290 agcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctgcagat 349
||||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 108 agcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctgcagat 167
Query: 350 gtcggccttcggaaatagaggccacccagacagcagccctcaaggttgatgcctcgccac 409
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 168 gtcggcctttagaaatagaggccacccagacagcaaccctcaaggttgatgccacgccac 227
Query: 410 agcttgcccggaagatccctgaaacactgtttgggatattttttgaggagatcaaccatg 469
|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct: 228 agcttgcccggaagatccctgaaacattatttgggatattttttgaggagattaaccatg 287
Query: 470 caggagctggtggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggct 529
|||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 288 caggggccggtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggcc 347
Query: 530 ctcatactccatcaaacatcgacccgtggtccatcattggagatgactcctccgtgtttg 589
||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |
Sbjct: 348 ctcatactccatcaaacattgacccgtggtccatcattggagatgactcctctatattcg 407
Query: 590 tggcgactgatcgtacatcatgtttcagtcgaaacattgttgctctgaggatggaggtcc 649
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 408 tggcgactgatcgtacatcatgtttcagccgaaacattgttgctctgaggatggaggtcc 467
Query: 650 tctgtgatgagtgtccagctggtggtgttggtgtttataacccaggtttttggggcatga 709
||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 468 tctgtaatgactgtccagctggtggtgttggtgtttacaacccaggtttttggggcatga 527
Query: 710 acatagaagatgggaaggcctacaatctcgttatgtatgttcagtccccagaaacaaagg 769
||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||| ||
Sbjct: 528 acatagaagatgggaaggcttacaatcttgttatgtatgttaagtctccggaaacaacgg 587
Query: 770 atctaacagtttcattaacaagctctgatgggttgcaaaacttggcttcagctacaataa 829
|| ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct: 588 atttaacagtttcattaacaagctctgacggattgcaaaacttggcttcagctacgataa 647
Query: 830 cagtttctggcacatcaaattggacaaaagtggagcagaagctggttgctaaaggaa 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cagtttctggcacatcaaattggacaaaagtggagcagaagctggttgctaaaggaa 704
>gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 811 bits (409), Expect = 0.0
Identities = 549/596 (92%), Gaps = 6/596 (1%)
Strand = Plus / Plus
Query: 201 tttgggaaggaggcatcggacgtcggatgcatgacacactcattgcattagcgcctacgc 260
||||| ||||||||| |||| | ||||||||||||||||||||||||||| || |||
Sbjct: 21 tttggaaaggaggcaacggatggtggatgcatgacacactcattgcattagtgcttac-- 78
Query: 261 ctaccgcaagtggaagcctatggatctcaagcaagcctcctctggtacaatcttctgcct 320
| |||||||||||||||||||||||||||| ||| |||| ||||||||||||| |
Sbjct: 79 ----cacaagtggaagcctatggatctcaagcaatccttctctactacaatcttctgcgt 134
Query: 321 tctgcttctattctgcgtgggctgcagatgtcggccttcggaaatagaggccacccagac 380
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 135 tctgcttctattctgtgtgggctgcagatgtcggcctttagaaatagaggccacccagac 194
Query: 381 agcagccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtt 440
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct: 195 agcaaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatt 254
Query: 441 tgggatattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagcttgt 500
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 255 tgggatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgt 314
Query: 501 cagtaacagaggtttcgaagctggaggctctcatactccatcaaacatcgacccgtggtc 560
|| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 315 caataacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtc 374
Query: 561 catcattggagatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcg 620
||||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||
Sbjct: 375 catcattggagatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccg 434
Query: 621 aaacattgttgctctgaggatggaggtcctctgtgatgagtgtccagctggtggtgttgg 680
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 435 aaacattgttgctctgaggatggaggtcctctgtaatgactgtccagctggtggtgttgg 494
Query: 681 tgtttataacccaggtttttggggcatgaacatagaagatgggaaggcctacaatctcgt 740
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 495 tgtttacaacccaggtttttggggcatgaacatagaagatgggaaggcttacaatcttgt 554
Query: 741 tatgtatgttcagtccccagaaacaaaggatctaacagtttcattaacaagctctg 796
|||||||||| |||| || ||||||| |||| ||||||||||||||||||||||||
Sbjct: 555 tatgtatgttaagtctccggaaacaacggatttaacagtttcattaacaagctctg 610
>gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 532
Score = 743 bits (375), Expect = 0.0
Identities = 485/522 (92%), Gaps = 6/522 (1%)
Strand = Plus / Plus
Query: 225 ggatgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatgga 284
||||||||||||||||||||||||||| || ||| | ||||||||||||||||||
Sbjct: 17 ggatgcatgacacactcattgcattagtgcttac------cacaagtggaagcctatgga 70
Query: 285 tctcaagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctg 344
|||||||||| ||| |||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct: 71 tctcaagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctg 130
Query: 345 cagatgtcggccttcggaaatagaggccacccagacagcagccctcaaggttgatgcctc 404
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 131 cagatgtcggcctttagaaatagaggccacccagacagcaaccctcaaggttgatgccac 190
Query: 405 gccacagcttgcccggaagatccctgaaacactgtttgggatattttttgaggagatcaa 464
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 191 gccacagcttgcccggaagatccctgaaacattatttgggatattttttgaggagattaa 250
Query: 465 ccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 251 ccatgcaggggccggtggcatatgggcagagcttgtcaataacagaggtttcgaagctgg 310
Query: 525 aggctctcatactccatcaaacatcgacccgtggtccatcattggagatgactcctccgt 584
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 311 aggccctcatactccatcaaacattgacccgtggtccatcattggagatgactcctctat 370
Query: 585 gtttgtggcgactgatcgtacatcatgtttcagtcgaaacattgttgctctgaggatgga 644
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 371 attcgtggcgactgatcgtacatcatgtttcagccgaaacattgttgctctgaggatgga 430
Query: 645 ggtcctctgtgatgagtgtccagctggtggtgttggtgtttataacccaggtttttgggg 704
|||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 ggtcctctgtaatgactgtccagctggtggtgttggtgtttacaacccaggtttttgggg 490
Query: 705 catgaacatagaagatgggaaggcctacaatctcgttatgta 746
|||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 491 catgaacatagaagatgggaaggcttacaatcttgttatgta 532
>gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 5', mRNA sequence
Length = 661
Score = 722 bits (364), Expect = 0.0
Identities = 505/553 (91%), Gaps = 13/553 (2%)
Strand = Plus / Plus
Query: 168 catccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcgga 227
||||||||||||| |||||||||| ||||||| ||||||||| |||| | |||
Sbjct: 122 catccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtgga 174
Query: 228 tgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatggatct 287
|||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 175 tgcatgacacactcattgcattagtgcttac------cacaagtggaagcctatggatct 228
Query: 288 caagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctgcag 347
||||||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 229 caagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctgcag 288
Query: 348 atgtcggccttcggaaatagaggccacccagacagcagccctcaaggttgatgcctcgcc 407
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 289 atgtcggcctttagaaatagaggccacccagacagcaaccctcaaggttgatgccacgcc 348
Query: 408 acagcttgcccggaagatccctgaaacactgtttgggatattttttgaggagatcaacca 467
|||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 349 acagcttgcccggaagatccctgaaacattatttgggatattttttgaggagattaacca 408
Query: 468 tgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtttcgaagctggagg 527
|||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 tgcaggggccggtggcatatgggcagagcttgtcaataacagaggtttcgaagctggagg 468
Query: 528 ctctcatactccatcaaacatcgacccgtggtccatcattggagatgactcctccgtgtt 587
| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct: 469 ccctcatactccatcaaacattgacccgtggtccatcattggagatgactcctctatatt 528
Query: 588 tgtggcgactgatcgtacatcatgtttcagtcgaaacattgttgctctgaggatggaggt 647
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 529 cgtggcgactgatcgtacatcatgtttcagccgaaacattgttgctctgaggatggaggt 588
Query: 648 cctctgtgatgagtgtccagctggtggtgttggtgtttataacccaggtttttggggcat 707
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 589 cctctgtaatgactgtccagctggtggtgttggtgtttacaacccaggtttttggggcat 648
Query: 708 gaacatagaagat 720
|||||||||||||
Sbjct: 649 gaacatagaagat 661
Score = 83.8 bits (42), Expect = 3e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 62 acccctcgcgtggcttccgtggcccgtagcccggcgcgcttcccttcaaagccactgctt 121
|||||||||||| ||||||| |||||||| | || ||||||||||||||||||||||||
Sbjct: 1 acccctcgcgtgccttccgtagcccgtaggcacgcacgcttcccttcaaagccactgctt 60
Query: 122 cgcctcctccttct 135
||||| || |||||
Sbjct: 61 cgccttcttcttct 74
>gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 5', mRNA sequence
Length = 531
Score = 670 bits (338), Expect = 0.0
Identities = 461/502 (91%), Gaps = 10/502 (1%)
Strand = Plus / Plus
Query: 225 ggatgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatgga 284
|||||||||||||||||||||||||| | || |||| ||||||||||||||||||
Sbjct: 40 ggatgcatgacacactcattgcatta------atgcttaccacaagtggaagcctatgga 93
Query: 285 tctcaagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctg 344
|||||||||| ||| |||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct: 94 tctcaagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctg 153
Query: 345 cagatgtcggccttcggaaatagaggccacccagacagcagccctcaaggttgatgcctc 404
|||||||||||||| |||||||||||||||||||||||| |||||||| | ||| |
Sbjct: 154 cagatgtcggcctttagaaatagaggccacccagacagcaaccctcaag----aggccac 209
Query: 405 gccacagcttgcccggaagatccctgaaacactgtttgggatattttttgaggagatcaa 464
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 210 gccacagcttgcccggaagatccctgaaacattatttgggatattttttgaggagattaa 269
Query: 465 ccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 270 ccatgcaggggccggtggcatatgggcagagcttgtcaataacagaggtttcgaagctgg 329
Query: 525 aggctctcatactccatcaaacatcgacccgtggtccatcattggagatgactcctccgt 584
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 330 aggccctcatactccatcaaacattgacccgtggtccatcattggagatgactcctctat 389
Query: 585 gtttgtggcgactgatcgtacatcatgtttcagtcgaaacattgttgctctgaggatgga 644
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 390 attcatggcgactgatcgtacatcatgtttcagccgaaacattgttgctctgaggatgga 449
Query: 645 ggtcctctgtgatgagtgtccagctggtggtgttggtgtttataacccaggtttttgggg 704
|||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 450 ggtcctctgtaatgactgtccagctggtggtgttggtgtttacaacccaggtttttgggg 509
Query: 705 catgaacatagaagatgggaag 726
||||||||||||||||||||||
Sbjct: 510 catgaacatagaagatgggaag 531
>gb|BF657255.1|BF657255 OV2_22_E11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 513
Score = 618 bits (312), Expect = e-175
Identities = 339/348 (97%)
Strand = Plus / Plus
Query: 845 caaattggacaaaagtggagcagaagctggttgctaaaggaaccaatagaacatcaaggc 904
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 caaattggacaaaagtggagcagaagctggttgctaaaggaaccaatagaacctcaaggc 60
Query: 905 ttcaaataacaacgaacaaaaaaggagttgtttggcttgatcaagtatcactcatgcctg 964
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 ttcaaataaaaactaacaaaaaaggagttgtatggcttgatcaagtatcactcatgcctg 120
Query: 965 aagacacatacaagggacatggtttccgcacagaacttatatccatgcttttggatttga 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagacacatacaagggacatggtttccgcacagaacttatatccatgcttttggatttga 180
Query: 1025 aaccacgattcttgagatttcctggaggttgttttgtagaaggtgactggctaagaaatg 1084
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 aaccacggttcttgagatttcctggaggttgttttgtagaaggtgagtggctaagaaatg 240
Query: 1085 cattcagatggagagaatcaattggtccatgggaagagaggcctggacacttcggggatg 1144
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 cattcagatggagagaatctattggtccatgggaagagaggcctggacactttggggatg 300
Query: 1145 tttggcattactggactgatgatgggcttggatattatgagttccttc 1192
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 301 tttggcattactggactgatgatgggcttggatattatgagtttcttc 348
>gb|CD463169.1|CD463169 ETH1_42_E06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_E06_A002 5', mRNA sequence
Length = 548
Score = 601 bits (303), Expect = e-170
Identities = 330/339 (97%)
Strand = Plus / Plus
Query: 854 caaaagtggagcagaagctggttgctaaaggaaccaatagaacatcaaggcttcaaataa 913
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 92 caaaagtggagcagaagctggttgctaaaggaaccaatagaacctcaaggcttcaaataa 151
Query: 914 caacgaacaaaaaaggagttgtttggcttgatcaagtatcactcatgcctgaagacacat 973
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 152 aaactaacaaaaaaggagttgtatggcttgatcaagtatcactcatgcctgaagacacat 211
Query: 974 acaagggacatggtttccgcacagaacttatatccatgcttttggatttgaaaccacgat 1033
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 212 acaagggacatggtttccgcacagaacttatatccatgcttttggatttgaaaccacggt 271
Query: 1034 tcttgagatttcctggaggttgttttgtagaaggtgactggctaagaaatgcattcagat 1093
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 272 tcttgagatttcctggaggttgttttgtagaaggtgagtggctaagaaatgcattcagat 331
Query: 1094 ggagagaatcaattggtccatgggaagagaggcctggacacttcggggatgtttggcatt 1153
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 332 ggagagaatctattggtccatgggaagagaggcctggacactttggggatgtttggcatt 391
Query: 1154 actggactgatgatgggcttggatattatgagttccttc 1192
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 392 actggactgatgatgggcttggatattatgagtttcttc 430
Score = 65.9 bits (33), Expect = 8e-009
Identities = 70/83 (84%), Gaps = 7/83 (8%)
Strand = Plus / Plus
Query: 169 atccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcggat 228
|||||||||||| |||||||||| ||||||| ||||||||| |||| | ||||
Sbjct: 9 atccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtggat 61
Query: 229 gcatgacacactcattgcattag 251
|||||||||||||||||||||||
Sbjct: 62 gcatgacacactcattgcattag 84
>gb|BI140713.1|BI140713 IP1_52_H01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 457
Score = 579 bits (292), Expect = e-163
Identities = 409/448 (91%)
Strand = Plus / Plus
Query: 608 catgtttcagtcgaaacattgttgctctgaggatggaggtcctctgtgatgagtgtccag 667
||||||||||||||||||| |||||||||||||||||||||| || ||| | |||||
Sbjct: 9 catgtttcagtcgaaacatcattgctctgaggatggaggtcctttgcgataactgtccta 68
Query: 668 ctggtggtgttggtgtttataacccaggtttttggggcatgaacatagaagatgggaagg 727
|||||||||||||| |||| |||||||| || ||||||||||||||||||||||| ||||
Sbjct: 69 ctggtggtgttggtatttacaacccagggttctggggcatgaacatagaagatggaaagg 128
Query: 728 cctacaatctcgttatgtatgttcagtccccagaaacaaaggatctaacagtttcattaa 787
|||||||||| |||||||||||| |||| |||||||||| || | | ||||||| |||
Sbjct: 129 cctacaatcttgttatgtatgttaagtcaccagaaacaaccgacttgatagtttcactaa 188
Query: 788 caagctctgatgggttgcaaaacttggcttcagctacaataacagtttctggcacatcaa 847
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct: 189 caagctctgatgggttgcaaaatctggcttcagctacaataacagtttccggcgaatcaa 248
Query: 848 attggacaaaagtggagcagaagctggttgctaaaggaaccaatagaacatcaaggcttc 907
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 249 attggacaaaagtggagcaaaagttggttgctaaaggaaccaatagaacctcaaggcttc 308
Query: 908 aaataacaacgaacaaaaaaggagttgtttggcttgatcaagtatcactcatgcctgaag 967
|||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 309 aaataacaactaacaagaaaggagttgtttggtttgatcaagtatcactcatgcctgaag 368
Query: 968 acacatacaagggacatggtttccgcacagaacttatatccatgcttttggatttgaaac 1027
||||||||||||||||||| || ||||||||||||||||||||| |||||||||| | ||
Sbjct: 369 acacatacaagggacatggctttcgcacagaacttatatccatgattttggatttaacac 428
Query: 1028 cacgattcttgagatttcctggaggttg 1055
||||||||||||||||||||||||||||
Sbjct: 429 cacgattcttgagatttcctggaggttg 456
>gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 573 bits (289), Expect = e-161
Identities = 399/436 (91%), Gaps = 6/436 (1%)
Strand = Plus / Plus
Query: 201 tttgggaaggaggcatcggacgtcggatgcatgacacactcattgcattagcgcctacgc 260
||||| ||||||||| |||| | ||||||||||||||||||||||||||| || |||
Sbjct: 21 tttggaaaggaggcaacggatggtggatgcatgacacactcattgcattagtgcttac-- 78
Query: 261 ctaccgcaagtggaagcctatggatctcaagcaagcctcctctggtacaatcttctgcct 320
| |||||||||||||||||||||||||||| ||| |||| ||||||||||||| |
Sbjct: 79 ----cacaagtggaagcctatggatctcaagcaatccttctctactacaatcttctgcgt 134
Query: 321 tctgcttctattctgcgtgggctgcagatgtcggccttcggaaatagaggccacccagac 380
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 135 tctgcttctattctgtgtgggctgcagatgtcggcctttagaaatagaggccacccagac 194
Query: 381 agcagccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtt 440
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct: 195 agcaaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattatt 254
Query: 441 tgggatattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagcttgt 500
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 255 tgggatattttttgaggagattaaccatgcaggggccggtggcatatgggcagagcttgt 314
Query: 501 cagtaacagaggtttcgaagctggaggctctcatactccatcaaacatcgacccgtggtc 560
|| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 315 caataacagaggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtc 374
Query: 561 catcattggagatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcg 620
||||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||
Sbjct: 375 catcattggagatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccg 434
Query: 621 aaacattgttgctctg 636
||||||||||||||||
Sbjct: 435 aaacattgttgctctg 450
>gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 483
Score = 563 bits (284), Expect = e-158
Identities = 423/469 (90%), Gaps = 14/469 (2%)
Strand = Plus / Plus
Query: 168 catccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcgga 227
||||||||||||| |||||||||| ||||||| ||||||||| |||| | |||
Sbjct: 21 catccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtgga 73
Query: 228 tgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatggatct 287
|||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 74 tgcatgacacactcattgcattagtgcttac------cacaagtggaagcctatggatct 127
Query: 288 caagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctgcag 347
||||||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 128 caagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctgcag 187
Query: 348 atgtcggccttcggaaatagaggccacccagacagcagccctcaaggttgatgcctcgcc 407
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 188 atgtcggcctttagaaatagaggccacccagacagcaaccctcaaggttgatgccacgcc 247
Query: 408 acagcttgcccggaagatccctgaaacactgtttgggatattttttgaggagatcaacca 467
|||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 248 acagcttgcccggaagatccctgaaacattatttgggatattttttgaggagattaacca 307
Query: 468 tgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtttcgaagctggagg 527
|||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 308 tgcaggggccggtggcatatgggcagagcttgtcaataacagaggtttcgaagctggagg 367
Query: 528 ctctcatactccatcaaacatcgacccgtggtccatcattggagatgactcctccgtgtt 587
| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct: 368 ccctcatactccatcaaacattgacccgtggtccatcattggagatgactcctctatatt 427
Query: 588 tgtggcgactgatcgta-catcatgtttcagtcgaaacattgttgctct 635
|||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 428 cgtggcgactgatcgtaccatcatgtttcagccgaaacattgttgctct 476
>gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F04_A012 5', mRNA sequence
Length = 720
Score = 551 bits (278), Expect = e-155
Identities = 420/467 (89%), Gaps = 14/467 (2%)
Strand = Plus / Plus
Query: 168 catccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcgga 227
||||||||||||| |||||||||| ||||||| ||||||||| |||| | |||
Sbjct: 267 catccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtgga 319
Query: 228 tgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatggatct 287
|||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 320 tgcatgacacactcattgcattagtgcttac------cacaagtggaagcctatggatct 373
Query: 288 caagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctgcag 347
||||||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 374 caagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctgcag 433
Query: 348 atgtcggccttcggaaatagaggccacccagacagcagccctcaaggttgatgcctcgcc 407
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 434 atgtcggcctttagaaatagaggccacccagacagcaaccctcaaggttgatgccacgcc 493
Query: 408 acagcttgcccggaagatccctgaaacactgtttgggatattttttgaggagatcaacca 467
|||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 494 acagcttgcccggaagatccctgaaacattatttgggatattttttgaggagattaacca 553
Query: 468 tgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtttcgaagctggagg 527
|||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 554 tgcaggggccggtggcatatgggcagagcttgtcaataacagaggtttcgaagctggagg 613
Query: 528 ctctcatactccatcaaacatcgacccgtggtccatcatt-ggagatgactcctccgtgt 586
| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| | |
Sbjct: 614 ccctcatactccatcaaacattgacccgtggtccatcattgggagatgactcctctatat 673
Query: 587 ttgtggcgactgatcgtacatcatgtttcagtcgaaacattgttgct 633
| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 674 tcatggcgactgatcgtacatcatgtttcagccgaaacattgttgct 720
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 5 cgcgaccctgacgcccgccgtctccggcacccgataggcctcc 47
||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 92 cgcgaccctgacgtccgccgtctccggcaccggataggtctcc 134
Score = 60.0 bits (30), Expect = 5e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 98 cgcttcccttcaaagccactgcttcgcctcctccttct 135
||||||||||||||||||||||||||||| || |||||
Sbjct: 188 cgcttcccttcaaagccactgcttcgccttcttcttct 225
>gb|BG322938.1|BG322938 EM1_15_H09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 391 bits (197), Expect = e-106
Identities = 308/346 (89%), Gaps = 13/346 (3%)
Strand = Plus / Plus
Query: 168 catccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcgga 227
||||||||||||| |||||||||| ||||||| ||||||||| |||| | |||
Sbjct: 181 catccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtgga 233
Query: 228 tgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatggatct 287
|||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 234 tgcatgacacactcattgcattagtgcttac------cacaagtggaagcctatggatct 287
Query: 288 caagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctgcag 347
||||||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 288 caagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctgcag 347
Query: 348 atgtcggccttcggaaatagaggccacccagacagcagccctcaaggttgatgcctcgcc 407
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 348 atgtcggcctttagaaatagaggccacccagacagcaaccctcaaggttgatgccacgcc 407
Query: 408 acagcttgcccggaagatccctgaaacactgtttgggatattttttgaggagatcaacca 467
|||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 408 acagcttgcccggaagatccctgaaacattatttgggatattttttgaggagattaacca 467
Query: 468 tgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
|||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct: 468 tgcaggggccggtggcatatgggcagagcttgtcaataacagaggt 513
Score = 87.7 bits (44), Expect = 2e-015
Identities = 105/125 (84%), Gaps = 7/125 (5%)
Strand = Plus / Plus
Query: 12 ctgacgcccgccgtctccggcacccgataggcct-cctccctnnnnnnnacacccctcgc 70
|||||| ||||||||||||||||| |||||| || |||||| |||||||||||
Sbjct: 15 ctgacgtccgccgtctccggcaccggataggtctccctccc------ccacacccctcgc 68
Query: 71 gtggcttccgtggcccgtagcccggcgcgcttcccttcaaagccactgcttcgcctcctc 130
||| ||||||| |||||||| | || ||||||||||||||||||||||||||||| ||
Sbjct: 69 gtgccttccgtagcccgtaggcacgcacgcttcccttcaaagccactgcttcgccttctt 128
Query: 131 cttct 135
|||||
Sbjct: 129 cttct 133
>gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 489
Score = 333 bits (168), Expect = 2e-089
Identities = 255/284 (89%)
Strand = Plus / Plus
Query: 367 gaggccacccagacagcagccctcaaggttgatgcctcgccacagcttgcccggaagatc 426
|||||||||||||| || |||||| ||| ||||||||||| |||||||| |||||||||
Sbjct: 184 gaggccacccagacggcgaccctcacggtcgatgcctcgccgcagcttgctcggaagatc 243
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 244 cctgatacactatttgggatcttctttgaggagatcaaccatgcaggagctggtggcata 303
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactccatcaaac 546
||||| || ||||| |||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 304 tgggctgaacttgttagtaacagaggttttgaagctggaggcctccatactccatcaaac 363
Query: 547 atcgacccgtggtccatcattggagatgactcctccgtgtttgtggcgactgatcgtaca 606
|| ||||| ||||||||||||||||||||||| || | | ||||| ||||||||| |||
Sbjct: 364 attgacccatggtccatcattggagatgactcttctatatatgtggagactgatcggaca 423
Query: 607 tcatgtttcagtcgaaacattgttgctctgaggatggaggtcct 650
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 424 tcatgtttcagtcgaaacatcattgctctgaggatggaggtcct 467
>gb|CF072403.1|CF072403 FE1_2_H07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_H07_A002 5', mRNA sequence
Length = 613
Score = 319 bits (161), Expect = 3e-085
Identities = 260/294 (88%), Gaps = 13/294 (4%)
Strand = Plus / Plus
Query: 168 catccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcgga 227
||||||||||||| |||||||||| ||||||| ||||||||| |||| | |||
Sbjct: 329 catccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtgga 381
Query: 228 tgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatggatct 287
|||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 382 tgcatgacacactcattgcattagtgcttac------cacaagtggaagcctatggatct 435
Query: 288 caagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctgcag 347
||||||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 436 caagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctgcag 495
Query: 348 atgtcggccttcggaaatagaggccacccagacagcagccctcaaggttgatgcctcgcc 407
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 496 atgtcggcctttagaaatagaggccacccagacagcaaccctcaaggttgatgccacgcc 555
Query: 408 acagcttgcccggaagatccctgaaacactgtttgggatattttttgaggagat 461
|||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 556 acagcttgcccggaagatccctgaaacattatttgggatattttttgaggagat 609
Score = 93.7 bits (47), Expect = 4e-017
Identities = 111/132 (84%), Gaps = 7/132 (5%)
Strand = Plus / Plus
Query: 5 cgcgaccctgacgcccgccgtctccggcacccgataggcctcc-tccctnnnnnnnacac 63
||||||||||||| ||||||||||||||||| |||||| |||| |||| ||||
Sbjct: 156 cgcgaccctgacgtccgccgtctccggcaccggataggtctccctccc------ccacac 209
Query: 64 ccctcgcgtggcttccgtggcccgtagcccggcgcgcttcccttcaaagccactgcttcg 123
|||||||||| ||||||| |||||||| | || |||||||| |||||||||||||||||
Sbjct: 210 ccctcgcgtgccttccgtagcccgtaggcacgcacgcttcccctcaaagccactgcttcg 269
Query: 124 cctcctccttct 135
||| || |||||
Sbjct: 270 ccttcttcttct 281
>gb|BM326547.1|BM326547 PIC1_58_D07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 239
Score = 317 bits (160), Expect = 1e-084
Identities = 211/228 (92%)
Strand = Plus / Plus
Query: 739 gttatgtatgttcagtccccagaaacaaaggatctaacagtttcattaacaagctctgat 798
|||||||||||| |||| || ||||||| |||| |||||||||||||||||||||||||
Sbjct: 12 gttatgtatgttaagtctccggaaacaacggatttaacagtttcattaacaagctctgac 71
Query: 799 gggttgcaaaacttggcttcagctacaataacagtttctggcacatcaaattggacaaaa 858
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 72 ggattgcaaaacttggcttcagctacaataacagtttctggcacatcacattggacaaaa 131
Query: 859 gtggagcagaagctggttgctaaaggaaccaatagaacatcaaggcttcaaataacaacg 918
||| |||||||||| ||||||||||||| ||||||| |||||||||||||||| |||
Sbjct: 132 acggaacagaagctggctgctaaaggaaccgatagaacctcaaggcttcaaataaaaact 191
Query: 919 aacaaaaaaggagttgtttggcttgatcaagtatcactcatgcctgaa 966
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 192 aacaaaaaaggagttgtatggcttgatcaagtatcactcatgcctgaa 239
>gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229977, DNA
sequence
Length = 616
Score = 315 bits (159), Expect = 5e-084
Identities = 189/199 (94%)
Strand = Plus / Minus
Query: 510 aggtttcgaagctggaggctctcatactccatcaaacatcgacccgtggtccatcattgg 569
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 585 aggtttcgaagctggaggccctcatactccatcaaacattgacccgtggtccatcattgg 526
Query: 570 agatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaacattgt 629
|||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 525 agatgactcctctatattcgtggcgactgatcgtacatcatgtttcagccgaaacattgt 466
Query: 630 tgctctgaggatggaggtcctctgtgatgagtgtccagctggtggtgttggtgtttataa 689
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||
Sbjct: 465 tgctctgaggatggaggtcctctgtaatgactgtccagctggtggtgttggtgtttacaa 406
Query: 690 cccaggtttttggggcatg 708
|||||||||||||||||||
Sbjct: 405 cccaggtttttggggcatg 387
Score = 87.7 bits (44), Expect = 2e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 708 gaacatagaagatgggaaggcctacaatctcgttatgtatgttcagtccccagaaacaaa 767
||||||||||||||||||||| |||||||| |||||||||||| |||| || |||||||
Sbjct: 72 gaacatagaagatgggaaggcttacaatcttgttatgtatgttaagtctccggaaacaac 13
Query: 768 ggatctaacagt 779
|||| |||||||
Sbjct: 12 ggatttaacagt 1
>gb|CW262292.1|CW262292 104_729_11229977_148_35205_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229977, DNA
sequence
Length = 664
Score = 285 bits (144), Expect = 5e-075
Identities = 183/196 (93%)
Strand = Plus / Plus
Query: 262 taccgcaagtggaagcctatggatctcaagcaagcctcctctggtacaatcttctgcctt 321
|||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||
Sbjct: 174 taccacaagtggaagcctatggatctcaagcaatccttctctactacaatcttctgcgtt 233
Query: 322 ctgcttctattctgcgtgggctgcagatgtcggccttcggaaatagaggccacccagaca 381
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 234 ctgcttctattctgtgtgggctgcagatgtcggcctttagaaatagaggccacccagaca 293
Query: 382 gcagccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgttt 441
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 294 gcaaccctcaaggttgatgccacgccacagcttgcccggaagatccctgaaacattattt 353
Query: 442 gggatattttttgagg 457
||||||||||||||||
Sbjct: 354 gggatattttttgagg 369
Score = 85.7 bits (43), Expect = 9e-015
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct: 464 aggagattaaccatgcaggggccggtggcatatgggcagagcttgtcaataacagaggt 522
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 510 aggtttcgaagctggaggctctcatactccatcaaacatcgacc 553
||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 621 aggtttcgaagctggaggccctcatactccatcaaacattgacc 664
>gb|BI075789.1|BI075789 IP1_21_C05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 577
Score = 232 bits (117), Expect = 6e-059
Identities = 269/317 (84%), Gaps = 2/317 (0%)
Strand = Plus / Plus
Query: 664 ccagctggtggtgttggtgtttataacccaggtttttggggcatgaacatagaagatggg 723
||||| ||||||||||| |||| |||||||| || ||||||||||||||||||||||||
Sbjct: 16 ccagccggtggtgttggcatttacaacccaggattctggggcatgaacatagaagatggg 75
Query: 724 aaggcctacaatctcgttatgtatgttcagtccccagaaacaa-aggatctaacagtttc 782
||||| |||||||| |||||||||||| |||| ||| ||| | | | | | ||||||||
Sbjct: 76 aaggcatacaatctagttatgtatgttaagtcgccaaaaaatacatgct-tgacagtttc 134
Query: 783 attaacaagctctgatgggttgcaaaacttggcttcagctacaataacagtttctggcac 842
| |||||||||| |||||||||||||| ||||||| | || |||| |||| | || |
Sbjct: 135 actaacaagctcagatgggttgcaaaatctggcttccgttaacataatagttgcagggaa 194
Query: 843 atcaaattggacaaaagtggagcagaagctggttgctaaaggaaccaatagaacatcaag 902
|| || |||| ||| |||||| ||||| |||||||||||||||| |||||||| |||||
Sbjct: 195 gtcgaagtggataaaggtggagaagaagttggttgctaaaggaactaatagaacctcaag 254
Query: 903 gcttcaaataacaacgaacaaaaaaggagttgtttggcttgatcaagtatcactcatgcc 962
||||||||||||| | || || ||||||||||| ||| |||| |||||||||||||||||
Sbjct: 255 gcttcaaataacatctaagaagaaaggagttgtgtggtttgaccaagtatcactcatgcc 314
Query: 963 tgaagacacatacaagg 979
|| ||||||||||||||
Sbjct: 315 tgcagacacatacaagg 331
>gb|BI075931.1|BI075931 IP1_23_B05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 376
Score = 232 bits (117), Expect = 6e-059
Identities = 269/317 (84%), Gaps = 2/317 (0%)
Strand = Plus / Plus
Query: 664 ccagctggtggtgttggtgtttataacccaggtttttggggcatgaacatagaagatggg 723
||||| ||||||||||| |||| |||||||| || ||||||||||||||||||||||||
Sbjct: 16 ccagccggtggtgttggcatttacaacccaggattctggggcatgaacatagaagatggg 75
Query: 724 aaggcctacaatctcgttatgtatgttcagtccccagaaacaa-aggatctaacagtttc 782
||||| |||||||| |||||||||||| |||| ||| ||| | | | | | ||||||||
Sbjct: 76 aaggcatacaatctagttatgtatgttaagtcgccaaaaaatacatgct-tgacagtttc 134
Query: 783 attaacaagctctgatgggttgcaaaacttggcttcagctacaataacagtttctggcac 842
| |||||||||| |||||||||||||| ||||||| | || |||| |||| | || |
Sbjct: 135 actaacaagctcagatgggttgcaaaatctggcttccgttaacataatagttgcagggaa 194
Query: 843 atcaaattggacaaaagtggagcagaagctggttgctaaaggaaccaatagaacatcaag 902
|| || |||| ||| |||||| ||||| |||||||||||||||| |||||||| |||||
Sbjct: 195 gtcgaagtggataaaggtggagaagaagttggttgctaaaggaactaatagaacctcaag 254
Query: 903 gcttcaaataacaacgaacaaaaaaggagttgtttggcttgatcaagtatcactcatgcc 962
||||||||||||| | || || ||||||||||| ||| |||| |||||||||||||||||
Sbjct: 255 gcttcaaataacatctaagaagaaaggagttgtgtggtttgaccaagtatcactcatgcc 314
Query: 963 tgaagacacatacaagg 979
|| ||||||||||||||
Sbjct: 315 tgcagacacatacaagg 331
>gb|AW564124.1|AW564124 LG1_282_F07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 485
Score = 208 bits (105), Expect = 9e-052
Identities = 195/226 (86%), Gaps = 13/226 (5%)
Strand = Plus / Plus
Query: 168 catccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcgga 227
||||||||||||| |||||||||| ||||||| ||||||||| |||| | |||
Sbjct: 273 catccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtgga 325
Query: 228 tgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatggatct 287
|||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 326 tgcatgacacactcattgcattagtgcttac------cacaagtggaagcctatggatct 379
Query: 288 caagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctgcag 347
||||||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 380 caagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctgcag 439
Query: 348 atgtcggccttcggaaatagaggccacccagacagcagccctcaag 393
||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 440 atgtcggcctttagaaatagaggccacccagacagcaaccctcaag 485
Score = 101 bits (51), Expect = 1e-019
Identities = 112/132 (84%), Gaps = 7/132 (5%)
Strand = Plus / Plus
Query: 5 cgcgaccctgacgcccgccgtctccggcacccgataggcctcc-tccctnnnnnnnacac 63
||||||||||||| ||||||||||||||||| |||||| |||| |||| ||||
Sbjct: 97 cgcgaccctgacgtccgccgtctccggcaccggataggtctccctccc------ccacac 150
Query: 64 ccctcgcgtggcttccgtggcccgtagcccggcgcgcttcccttcaaagccactgcttcg 123
|||||||||| ||||||| |||||||| | || ||||||||||||||||||||||||||
Sbjct: 151 ccctcgcgtgccttccgtagcccgtaggcacgcacgcttcccttcaaagccactgcttcg 210
Query: 124 cctcctccttct 135
||| || |||||
Sbjct: 211 ccttcttcttct 222
>gb|CW122132.1|CW122132 104_500_11110443_116_34667_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110443, DNA
sequence
Length = 602
Score = 206 bits (104), Expect = 3e-051
Identities = 130/136 (95%), Gaps = 2/136 (1%)
Strand = Plus / Plus
Query: 831 agtttctggcacatcaaattggacaaaagtggagcagaagctggttgctaaaggaaccaa 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agtttctggcacatcaaattggacaaaagtggagcagaagctggttgctaaaggaaccaa 527
Query: 891 tagaacatcaaggcttcaaataacaacgaacaaaaaaggagttgtttggc-ttgatcaag 949
|||||| |||||||||||||||| ||| ||||||||||||||||| |||| |||||| ||
Sbjct: 528 tagaacctcaaggcttcaaataaaaactaacaaaaaaggagttgtatggctttgatc-ag 586
Query: 950 tatcactcatgcctga 965
||||||||||||||||
Sbjct: 587 tatcactcatgcctga 602
Score = 165 bits (83), Expect = 1e-038
Identities = 113/123 (91%)
Strand = Plus / Plus
Query: 708 gaacatagaagatgggaaggcctacaatctcgttatgtatgttcagtccccagaaacaaa 767
||||||||||||||||||||| |||||||| |||||||||||| |||| || |||||||
Sbjct: 263 gaacatagaagatgggaaggcttacaatcttgttatgtatgttaagtctccggaaacaac 322
Query: 768 ggatctaacagtttcattaacaagctctgatgggttgcaaaacttggcttcagctacaat 827
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 323 ggatttaacagtttcattaacaagctctgacggattgcaaaacttggcttcagctacgat 382
Query: 828 aac 830
|||
Sbjct: 383 aac 385
>gb|BZ423213.1|BZ423213 id46f11.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id46f11 5', DNA sequence
Length = 794
Score = 196 bits (99), Expect = 3e-048
Identities = 108/111 (97%)
Strand = Plus / Minus
Query: 1048 ggaggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaatt 1107
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 111 ggaggttgttttgtagaaggtgagtggctaagaaatgcattcagatggagagaatctatt 52
Query: 1108 ggtccatgggaagagaggcctggacacttcggggatgtttggcattactgg 1158
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 51 ggtccatgggaagagaggcctggacactttggggatgtttggcattactgg 1
Score = 137 bits (69), Expect = 3e-030
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 977 agggacatggtttccgcacagaacttatatccatgcttttggatttgaaaccacgattct 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 289 agggacatggtttccgcacagaacttatatccatgcttttggatttgaaaccacggttct 230
Query: 1037 tgagatttcctgg 1049
|||||||||||||
Sbjct: 229 tgagatttcctgg 217
>gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 709
Score = 190 bits (96), Expect = 2e-046
Identities = 168/192 (87%)
Strand = Plus / Minus
Query: 517 gaagctggaggctctcatactccatcaaacatcgacccgtggtccatcattggagatgac 576
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 275 gaagctggaggcctccatactccatcaaacattgacccatggtccatcattggagatgac 216
Query: 577 tcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaacattgttgctctg 636
|| || | | ||||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 215 tcttctatatatgtggagactgatcggacatcatgtttcagtcgaaacatcattgctctg 156
Query: 637 aggatggaggtcctctgtgatgagtgtccagctggtggtgttggtgtttataacccaggt 696
|||||||||||||| || ||| | ||||| |||||||||||||| |||| ||||||||
Sbjct: 155 aggatggaggtcctttgcgataactgtcctactggtggtgttggtatttacaacccaggg 96
Query: 697 ttttggggcatg 708
|| |||||||||
Sbjct: 95 ttctggggcatg 84
Score = 93.7 bits (47), Expect = 4e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 530 aggagatcaaccatgcaggagctggtggcatatgggctgaacttgttagtaacagaggt 472
>gb|BG488202.1|BG488202 RHIZ2_60_G05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 554
Score = 184 bits (93), Expect = 1e-044
Identities = 135/149 (90%)
Strand = Plus / Plus
Query: 367 gaggccacccagacagcagccctcaaggttgatgcctcgccacagcttgcccggaagatc 426
|||||||||||||| || |||||| ||| ||||||||||| |||||||| |||||||||
Sbjct: 405 gaggccacccagacggcgaccctcacggtcgatgcctcgccgcagcttgctcggaagatc 464
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 465 cctgatacactatttgggatcttctttgaggagatcaaccatgcaggagctggtggcata 524
Query: 487 tgggcagagcttgtcagtaacagaggttt 515
||||| || ||||| ||||||||||||||
Sbjct: 525 tgggctgaacttgttagtaacagaggttt 553
>gb|CF072886.1|CF072886 FE1_26_E01.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_26_E01_A002 5', mRNA sequence
Length = 476
Score = 168 bits (85), Expect = 7e-040
Identities = 172/202 (85%), Gaps = 13/202 (6%)
Strand = Plus / Plus
Query: 168 catccggtagctcgatcacttcttcctttggattttgggaaggaggcatcggacgtcgga 227
||||||||||||| |||||||||| ||||||| ||||||||| |||| | |||
Sbjct: 288 catccggtagctccatcacttcttgctttgga-------aaggaggcaacggatggtgga 340
Query: 228 tgcatgacacactcattgcattagcgcctacgcctaccgcaagtggaagcctatggatct 287
|||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 341 tgcatgacacactcattgcattagtgcttac------cacaagtggaagcctatggatct 394
Query: 288 caagcaagcctcctctggtacaatcttctgccttctgcttctattctgcgtgggctgcag 347
||||||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 395 caagcaatccttctctactacaatcttctgcgttctgcttctattctgtgtgggctgcag 454
Query: 348 atgtcggccttcggaaatagag 369
||||||||||| |||||||||
Sbjct: 455 atgtcggcctttagaaatagag 476
Score = 101 bits (51), Expect = 1e-019
Identities = 112/132 (84%), Gaps = 7/132 (5%)
Strand = Plus / Plus
Query: 5 cgcgaccctgacgcccgccgtctccggcacccgataggcctcc-tccctnnnnnnnacac 63
||||||||||||| ||||||||||||||||| |||||| |||| |||| ||||
Sbjct: 115 cgcgaccctgacgtccgccgtctccggcaccggataggtctccctccc------ccacac 168
Query: 64 ccctcgcgtggcttccgtggcccgtagcccggcgcgcttcccttcaaagccactgcttcg 123
|||||||||| ||||||| |||||||| | || ||||||||||||||||||||||||||
Sbjct: 169 ccctcgcgtgccttccgtagcccgtaggcacgcacgcttcccttcaaagccactgcttcg 228
Query: 124 cctcctccttct 135
||| || |||||
Sbjct: 229 ccttcttcttct 240
>gb|BZ345347.1|BZ345347 hr49h09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr49h09 5', DNA sequence
Length = 493
Score = 163 bits (82), Expect = 5e-038
Identities = 121/130 (93%), Gaps = 3/130 (2%)
Strand = Plus / Plus
Query: 847 aattggacaaaagtggagcagaagctggttgctaaaggaaccaatagaacatcaaggctt 906
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct: 365 aattggacaaaagtggagcaaaagttggttgctaaaggaaccaatagaacctcaaggctt 424
Query: 907 caaataacaacgaacaa-aaaaggag-ttgtttggcttgatcaagtatcactcatgcctg 964
|||||||| || ||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 425 caaataac-actaacaaggaaaggagtttgtttggtttgatcaagtatcactcatgcctg 483
Query: 965 aagacacata 974
||||||||||
Sbjct: 484 aagacacata 493
Score = 141 bits (71), Expect = 2e-031
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 708 gaacatagaagatgggaaggcctacaatctcgttatgtatgttcagtccccagaaacaaa 767
||||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 147 gaacatagaagatggaaaggcctacaatcttgttatgtatgttaagtcaccagaaacaac 206
Query: 768 ggatctaacagtttcattaacaagctctgatgggttgcaaaacttggcttcagctacaat 827
|| | | ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 207 cgacttgatagtttcactaacaagctctgatgggttgcaaaatctggcttcagctacaat 266
Query: 828 aac 830
|||
Sbjct: 267 aac 269
>gb|BG273563.1|BG273563 OV2_27_C04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 304
Score = 163 bits (82), Expect = 5e-038
Identities = 121/134 (90%)
Strand = Plus / Plus
Query: 367 gaggccacccagacagcagccctcaaggttgatgcctcgccacagcttgcccggaagatc 426
|||||||||||||| || |||||| ||| ||||||||||| |||||||| |||||||||
Sbjct: 171 gaggccacccagacggcgaccctcacggtcgatgcctcgccgcagcttgctcggaagatc 230
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 231 cctgatacactatttgggatcttctttgaggagatcaaccatgcaggagctggtggcata 290
Query: 487 tgggcagagcttgt 500
||||| || |||||
Sbjct: 291 tgggctgaacttgt 304
>gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_E04_A002 5', mRNA sequence
Length = 266
Score = 147 bits (74), Expect = 3e-033
Identities = 128/146 (87%)
Strand = Plus / Plus
Query: 505 aacagaggtttcgaagctggaggctctcatactccatcaaacatcgacccgtggtccatc 564
|||||||| || |||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 97 aacagagggtttgaagctggaggcctccatactccatcaaacattgacccatggtccatc 156
Query: 565 attggagatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaac 624
|||||||||||||| || | | ||||| ||||||||| |||||||||||||| | ||||
Sbjct: 157 attggagatgactcttctatatatgtggagactgatcggacatcatgtttcagcccaaac 216
Query: 625 attgttgctctgaggatggaggtcct 650
|| ||||||||||||||||||||||
Sbjct: 217 atcattgctctgaggatggaggtcct 242
>gb|CW792157.1|CW792157 SP__Ba0089F13.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0089F13 5', DNA sequence
Length = 196
Score = 143 bits (72), Expect = 4e-032
Identities = 120/136 (88%)
Strand = Plus / Plus
Query: 510 aggtttcgaagctggaggctctcatactccatcaaacatcgacccgtggtccatcattgg 569
|||||| |||||||||||| ||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 61 aggttttgaagctggaggcctccatactccatcaaacattgacccatggcccatcattgg 120
Query: 570 agatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaacattgt 629
||||||||| || | | ||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 121 agatgactcttctatatatgtggagactgatcggacatcatgtttcagtcgaaacatcat 180
Query: 630 tgctctgaggatggag 645
||||||||||||||||
Sbjct: 181 tgctctgaggatggag 196
>gb|BZ421859.1|BZ421859 id46f11.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id46f11 5', DNA sequence
Length = 693
Score = 137 bits (69), Expect = 3e-030
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 977 agggacatggtttccgcacagaacttatatccatgcttttggatttgaaaccacgattct 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 514 agggacatggtttccgcacagaacttatatccatgcttttggatttgaaaccacggttct 573
Query: 1037 tgagatttcctgg 1049
|||||||||||||
Sbjct: 574 tgagatttcctgg 586
>gb|CW419756.1|CW419756 fsbb001f124m03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f124m03, DNA
sequence
Length = 629
Score = 135 bits (68), Expect = 1e-029
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1105 attggtccatgggaagagaggcctggacacttcggggatgtttggcattactggactgat 1164
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 11 attggtccatgggaagagagacctggacacttcggggatgtttggcattactggactgat 70
Query: 1165 gatgggcttggatattatga 1184
||||| |||||||| |||||
Sbjct: 71 gatggccttggatactatga 90
>gb|CW089678.1|CW089678 104_435_10948844_114_32597_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948844, DNA
sequence
Length = 758
Score = 123 bits (62), Expect = 4e-026
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||| ||||| ||||||| |||||||||||||||||||| |||||| |||| ||||||
Sbjct: 519 ggttgctttgtggaaggtggttggctaagaaatgcattcaggtggagacaatccattggt 578
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| |||||||||||||| ||||||||||| || |||||| |||||||| || |||||
Sbjct: 579 ccgtgggaagagaggccaggacacttcggagactgttggcagtactggaccgacgatggt 638
Query: 1171 cttggatatt 1180
||||||||||
Sbjct: 639 cttggatatt 648
Score = 65.9 bits (33), Expect = 8e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1009 atgcttttggatttgaaaccacgattcttgagatttcctgg 1049
|||||||||||||| |||||||||||||| |||||||||||
Sbjct: 370 atgcttttggatttaaaaccacgattcttaagatttcctgg 410
>gb|CW089679.1|CW089679 104_435_10948844_116_32599_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948844, DNA
sequence
Length = 699
Score = 123 bits (62), Expect = 4e-026
Identities = 113/130 (86%)
Strand = Plus / Minus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||| ||||| ||||||| |||||||||||||||||||| |||||| |||| ||||||
Sbjct: 390 ggttgctttgtggaaggtggttggctaagaaatgcattcaggtggagacaatccattggt 331
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| |||||||||||||| ||||||||||| || |||||| |||||||| || |||||
Sbjct: 330 ccgtgggaagagaggccaggacacttcggagactgttggcagtactggaccgacgatggt 271
Query: 1171 cttggatatt 1180
||||||||||
Sbjct: 270 cttggatatt 261
Score = 65.9 bits (33), Expect = 8e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1009 atgcttttggatttgaaaccacgattcttgagatttcctgg 1049
|||||||||||||| |||||||||||||| |||||||||||
Sbjct: 539 atgcttttggatttaaaaccacgattcttaagatttcctgg 499
>gb|CW219439.1|CW219439 104_653_11196765_116_37141_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196765, DNA
sequence
Length = 642
Score = 101 bits (51), Expect = 1e-019
Identities = 112/132 (84%), Gaps = 7/132 (5%)
Strand = Plus / Plus
Query: 5 cgcgaccctgacgcccgccgtctccggcacccgataggcctcc-tccctnnnnnnnacac 63
||||||||||||| ||||||||||||||||| |||||| |||| |||| ||||
Sbjct: 387 cgcgaccctgacgtccgccgtctccggcaccggataggtctccctccc------ccacac 440
Query: 64 ccctcgcgtggcttccgtggcccgtagcccggcgcgcttcccttcaaagccactgcttcg 123
|||||||||| ||||||| |||||||| | || ||||||||||||||||||||||||||
Sbjct: 441 ccctcgcgtgccttccgtagcccgtaggcacgcacgcttcccttcaaagccactgcttcg 500
Query: 124 cctcctccttct 135
||| || |||||
Sbjct: 501 ccttcttcttct 512
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 168 catccggtagctcgatcacttcttcctttgga 199
||||||||||||| |||||||||| |||||||
Sbjct: 560 catccggtagctccatcacttcttgctttgga 591
>gb|CW219440.1|CW219440 104_653_11196765_148_37142_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196765, DNA
sequence
Length = 693
Score = 101 bits (51), Expect = 1e-019
Identities = 112/132 (84%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 5 cgcgaccctgacgcccgccgtctccggcacccgataggcctcc-tccctnnnnnnnacac 63
||||||||||||| ||||||||||||||||| |||||| |||| |||| ||||
Sbjct: 559 cgcgaccctgacgtccgccgtctccggcaccggataggtctccctccc------ccacac 506
Query: 64 ccctcgcgtggcttccgtggcccgtagcccggcgcgcttcccttcaaagccactgcttcg 123
|||||||||| ||||||| |||||||| | || ||||||||||||||||||||||||||
Sbjct: 505 ccctcgcgtgccttccgtagcccgtaggcacgcacgcttcccttcaaagccactgcttcg 446
Query: 124 cctcctccttct 135
||| || |||||
Sbjct: 445 ccttcttcttct 434
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 168 catccggtagctcgatcacttcttcctttgga 199
||||||||||||| |||||||||| |||||||
Sbjct: 386 catccggtagctccatcacttcttgctttgga 355
>gb|BG357728.1|BG357728 OV2_29_F03.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 330
Score = 101 bits (51), Expect = 1e-019
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 1138 ggggatgtttggcattactggactgatgatgggcttggatattatgagttccttc 1192
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13 ggggatgtttggcattactggactgatgatgggcttggatattatgagtttcttc 67
>gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 5', mRNA sequence
Length = 689
Score = 101 bits (51), Expect = 1e-019
Identities = 105/123 (85%)
Strand = Plus / Plus
Query: 437 tgtttgggatattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagc 496
||||||| || || |||||||| ||||||||||| ||||||||||| | ||||| ||||
Sbjct: 445 tgtttggcatcttctttgaggaaatcaaccatgctggagctggtggattgtgggcggagc 504
Query: 497 ttgtcagtaacagaggtttcgaagctggaggctctcatactccatcaaacatcgacccgt 556
|||| || ||||||||||| |||||||| || ||| ||||||| |||||||| ||||| |
Sbjct: 505 ttgttagcaacagaggttttgaagctggtggttctaatactccttcaaacattgacccat 564
Query: 557 ggt 559
|||
Sbjct: 565 ggt 567
>gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 5', mRNA sequence
Length = 769
Score = 97.6 bits (49), Expect = 2e-018
Identities = 103/121 (85%)
Strand = Plus / Plus
Query: 398 atgcctcgccacagcttgcccggaagatccctgaaacactgtttgggatattttttgagg 457
|||||||||||||| ||| ||||||||||||| | ||||||| || ||||| ||||
Sbjct: 126 atgcctcgccacagaatgctaggaagatccctgataagatgtttggtatctttttcgagg 185
Query: 458 agatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtttcg 517
||||||||||||| ||||||||||| | |||||||||||||| || |||||||| ||||
Sbjct: 186 agatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagaggattcg 245
Query: 518 a 518
|
Sbjct: 246 a 246
Score = 42.1 bits (21), Expect = 0.12
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 898 tcaaggcttcaaataacaacgaacaaaaaaggagttgtttggcttgatcaagtatca 954
|||||||||||| | ||||| | |||| || || |||||||||||||||||||||
Sbjct: 647 tcaaggcttcaacttacaacaagtaaaagtggggtagtttggcttgatcaagtatca 703
>gb|CW469203.1|CW469203 fsbb001f221m21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 752
Score = 93.7 bits (47), Expect = 4e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 367 gaggccacccagacagcagccctcaaggttgatgcctcgccacagcttgcccggaagatc 426
|||||||||||||| || |||||| ||| ||||||||||| |||||||| |||||||||
Sbjct: 441 gaggccacccagacggcgaccctcacggtcgatgcctcgccgcagcttgctcggaagatc 500
Query: 427 cctgaaacactgtttgggatattttttgagg 457
||||| ||||| |||||||| || |||||||
Sbjct: 501 cctgatacactatttgggatcttctttgagg 531
Score = 83.8 bits (42), Expect = 3e-014
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagagg 512
||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||
Sbjct: 664 aggagatcaaccatgcaggagctggtggcatatgggctgaacttgttaataacagagg 721
>gb|CW190352.1|CW190352 104_612_11174457_148_36834_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174457, DNA
sequence
Length = 630
Score = 91.7 bits (46), Expect = 1e-016
Identities = 118/142 (83%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||| ||||| ||||| ||| | |||||||||| |||||||||| ||| | ||||||
Sbjct: 180 ggttgctttgttgaaggcgaccagttaagaaatgctttcagatggaaggaaactattggt 239
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|||||||||||||| |||||||||| || || ||||| | |||||||| ||||||||
Sbjct: 240 ccatgggaagagagacctggacactatggagacttttggaaatactggaccgatgatggc 299
Query: 1171 cttggatattatgagttccttc 1192
||||| |||| |||||| ||||
Sbjct: 300 cttgggtattttgagtttcttc 321
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 91.7 bits (46), Expect = 1e-016
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||| ||||| ||||| ||| | |||||||||| |||||||||| ||| | ||||||
Sbjct: 9628 ggttgctttgttgaaggcgaccagttaagaaatgctttcagatggaaggaaactattggt 9569
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|||||||||||||| |||||||||| || || ||||| | |||||||| ||||||||
Sbjct: 9568 ccatgggaagagagacctggacactatggagacttttggaaatactggaccgatgatggc 9509
Query: 1171 cttggatattatgagttccttc 1192
||||| |||| |||||| ||||
Sbjct: 9508 cttgggtattttgagtttcttc 9487
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
|||||||||||||||| ||||||||||| || |||| |||||||| || |||||||||
Sbjct: 14714 aggagatcaaccatgcgggagctggtggaatctgggaggagcttgttagcaacagaggt 14656
Score = 48.1 bits (24), Expect = 0.002
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctccgtgtttgtggcgactgat 600
|||||||| ||||| ||| ||||||||||||||| || ||| | | ||| |||||||
Sbjct: 14143 tcaaacatagacccatggaacatcattggagatgagtcttccatatacgtgacgactgaa 14084
Query: 601 cgtacatcatgtttcagtcgaaacattgttgctctgaggatggaggtcctctgtga 656
| | || ||||||| | |||| ||||||||||| || |||||||| ||||||||
Sbjct: 14083 gctgcctcctgtttcactagaaatattgttgctctaagaatggaggttctctgtga 14028
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1009 atgcttttggatttgaaaccacgatt 1034
|||||| |||||||||||||||||||
Sbjct: 12860 atgcttctggatttgaaaccacgatt 12835
>gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 378
Score = 73.8 bits (37), Expect = 3e-011
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactccatcaaac 546
||||| |||||||| || ||||||||||| |||||||| || ||| ||||||| ||||||
Sbjct: 17 tgggcggagcttgttagcaacagaggttttgaagctggtggttctaatactccttcaaac 76
Query: 547 atcgacccgtggtccatcattggagatga 575
|| ||||| |||| |||||||| |||||
Sbjct: 77 attgacccatggttgatcattggggatga 105
>gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472253, DNA
sequence
Length = 602
Score = 69.9 bits (35), Expect = 5e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
|||||||||||||||| ||||||||||| | |||||||||||||| || |||||||||
Sbjct: 244 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagaggt 186
>gb|BG556928.1|BG556928 EM1_40_D05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 104
Score = 63.9 bits (32), Expect = 3e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 60 acacccctcgcgtggcttccgtggcccgtagcccggcgcgcttcccttcaaagccactgc 119
|||||||||||||| ||||||| |||||| | || ||||| ||||||||||||||||
Sbjct: 28 acacccctcgcgtgccttccgtatcccgtaagcacgcacgcttgccttcaaagccactgc 87
Query: 120 ttcgcctcctccttct 135
||||||| || |||||
Sbjct: 88 ttcgccttcttcttct 103
>gb|CW219722.1|CW219722 104_654_11196948_116_37152_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196948, DNA
sequence
Length = 642
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
|||||||||||||||| ||||||||||| || |||| |||||||| || |||||||||
Sbjct: 347 aggagatcaaccatgcgggagctggtggaatctgggaggagcttgttagcaacagaggt 289
>gb|CW288351.1|CW288351 104_766_11411905_116_35529_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411905, DNA
sequence
Length = 649
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 471 aggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
|||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 491 aggagctggtggaatatgggcagaactggtcagtaacagaggt 449
>gb|CW288352.1|CW288352 104_766_11411905_148_35533_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411905, DNA
sequence
Length = 679
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 471 aggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
|||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 397 aggagctggtggaatatgggcagaactggtcagtaacagaggt 439
Score = 60.0 bits (30), Expect = 5e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctga 431
||||||||||||||||||| ||| ||||||| || |||||||||||
Sbjct: 195 ccctcaaggttgatgcctcaccaaagcttgctcgaaagatccctga 240
>gb|CW409693.1|CW409693 fsbb001f104b19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104b19, DNA
sequence
Length = 741
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
|||||||||||||||| ||||||||||| || |||| |||||||| || |||||||||
Sbjct: 476 aggagatcaaccatgcgggagctggtggaatctgggaggagcttgttagcaacagaggt 418
>gb|CD230559.1|CD230559 SS1_44_G04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_44_G04_A012 5', mRNA sequence
Length = 507
Score = 60.0 bits (30), Expect = 5e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctga 431
||||||||||||||||||| ||| ||||||| || |||||||||||
Sbjct: 267 ccctcaaggttgatgcctcaccaaagcttgctcgaaagatccctga 312
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 471 aggagctggtggcatatgggcagagcttgtcagtaacag 509
|||||||||||| ||||||||||| || |||||||||||
Sbjct: 469 aggagctggtggaatatgggcagaactggtcagtaacag 507
>gb|BZ349906.1|BZ349906 hr47b09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr47b09 5', DNA sequence
Length = 673
Score = 56.0 bits (28), Expect = 8e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1153 tactggactgatgatgggcttggatattatgagttccttc 1192
||||||||||||||||| ||||||| || |||||||||||
Sbjct: 120 tactggactgatgatggacttggattttttgagttccttc 81
Score = 42.1 bits (21), Expect = 0.12
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 898 tcaaggcttcaaataacaacgaacaaaaaaggagttgtttggcttgatcaagtatca 954
|||||||||||| | ||||| | |||| || || |||||||||||||||||||||
Sbjct: 669 tcaaggcttcaacttacaacaagtaaaagtggggtagtttggcttgatcaagtatca 613
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 313,868
Number of Sequences: 832831
Number of extensions: 313868
Number of successful extensions: 84332
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84126
Number of HSP's gapped (non-prelim): 193
length of query: 1192
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1172
effective length of database: 474,703,049
effective search space: 556351973428
effective search space used: 556351973428
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)